Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776579.1| palmitoyl-protein thioesterase 1 precursor [Bos... 571 e-163
Alignment gi|NP_001030395.2| lysosomal thioesterase PPT2 precursor [Bos t... 77 4e-14
>ref|NP_776579.1| palmitoyl-protein thioesterase 1 precursor [Bos taurus].
Length = 306
Score = 571 bits (1471), Expect = e-163
Identities = 273/293 (93%), Positives = 284/293 (96%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 239
FL GSC +LALGH+DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGI+VLSLEIG
Sbjct: 14 FLLGSCASLALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIG 73
Query: 240 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 419
KTL EDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP PPM
Sbjct: 74 KTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPM 133
Query: 420 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 599
+NLIS+GGQHQGVFG PRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPI+ED
Sbjct: 134 VNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIRED 193
Query: 600 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 779
+YRNHSIFLADINQER +NESYKKNLMALKKFVMVKFLND+IVDPVDSEWFGFYRSGQAK
Sbjct: 194 IYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAK 253
Query: 780 ETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 938
ETIPLQESTLYTQDRLGL+ MDKAG+LVFL LEGDHLQL EEWFYAHIIPFLE
Sbjct: 254 ETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306
>ref|NP_001030395.2| lysosomal thioesterase PPT2 precursor [Bos taurus].
Length = 305
Score = 76.6 bits (187), Expect = 4e-14
Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 8/262 (3%)
Frame = +3
Query: 120 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPG--IYVLSLEIGKTLVEDVENSFFLNVNSQ 293
P+++ HG+ DS S + + + + PG + VL L G+ + + + V
Sbjct: 41 PVIVVHGLFDSS---YSFRHLLEYINETHPGTAVTVLDLFDGRESLRPL----WEQVQGF 93
Query: 294 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFGFPR 473
V I+AK QG + + +SQGG RA+ + + IS+ G +G
Sbjct: 94 REAVAPIMAK---ALQGVHLICYSQGGLVCRALLSVMDEHNVDSFISLSSPQMGQYG--- 147
Query: 474 CPGESSHICDFIRKTLNAGAYNKAIQ---ERLVQAEYWHDPIKEDVYRNHSIFLADINQE 644
+++++ ++ + Y + YWHDP +D+Y N S FLA IN E
Sbjct: 148 ---DTNYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGE 204
Query: 645 RSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETI-PLQESTLYT 815
R +++KN + L + V++ +D ++ P S +FGFY A ET+ +++ +Y
Sbjct: 205 RDHPNATAWRKNFLRLGRLVLIGGPDDGVITPWQSSFFGFY---DANETVLEMEKQLVYL 261
Query: 816 QDRLGLREMDKAGRLVFLGLEG 881
+D GL+ + G +V + G
Sbjct: 262 RDSFGLKTLLARGAIVRCPMAG 283
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,604,153
Number of extensions: 1445656
Number of successful extensions: 4474
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4473
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,207,134
Effective search space: 4631525684
Effective search space used: 4631525684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010944.1| palmitoyl-protein thioesterase 1 [Canis lupu... 547 e-156
Alignment gi|XP_532090.2| PREDICTED: similar to palmitoyl-protein thioest... 82 1e-15
>ref|NP_001010944.1| palmitoyl-protein thioesterase 1 [Canis lupus familiaris].
Length = 306
Score = 547 bits (1409), Expect = e-156
Identities = 264/292 (90%), Positives = 275/292 (94%)
Frame = +3
Query: 63 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 242
LPGS A A +DP APLPLVIWHGMGDSCCNPLSMGAIKKMVE+KIPGIYVLSLEIGK
Sbjct: 15 LPGSGAARAPWRLDPAAPLPLVIWHGMGDSCCNPLSMGAIKKMVEEKIPGIYVLSLEIGK 74
Query: 243 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 422
TL+EDVENSFFLNVNSQVTTVCQILAKDPKL QGYNAMGFSQGGQFLRAVAQRCP PPMI
Sbjct: 75 TLMEDVENSFFLNVNSQVTTVCQILAKDPKLHQGYNAMGFSQGGQFLRAVAQRCPSPPMI 134
Query: 423 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 602
NLISIGGQHQGV+G PRCPGESSHICD IRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 135 NLISIGGQHQGVYGLPRCPGESSHICDLIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDT 194
Query: 603 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 782
YRNHSIFLADINQER +NESYK+NLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE
Sbjct: 195 YRNHSIFLADINQERGVNESYKRNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 783 TIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 938
TIPLQE+ LYTQDRLGL+EMD AG+LVFL +EGDHLQL +EWFYAHIIPFLE
Sbjct: 255 TIPLQETALYTQDRLGLKEMDNAGQLVFLAVEGDHLQLSQEWFYAHIIPFLE 306
>ref|XP_532090.2| PREDICTED: similar to palmitoyl-protein thioesterase 2 isoform a
precursor [Canis familiaris].
Length = 303
Score = 82.0 bits (201), Expect = 1e-15
Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 24/297 (8%)
Frame = +3
Query: 63 LPGSCLALALGHVDPPAP-----------LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP 209
LP + L L + PP P P+++ HG+ DS S + + + + P
Sbjct: 9 LPPVGILLLLPFLPPPLPPAAPAPHRAAYKPVIVVHGLFDSS---YSFRHLLEYINETHP 65
Query: 210 GIYVLSLEI--GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 383
G V L++ G+ + + + V V I+AK P QG + + +SQGG
Sbjct: 66 GTVVTVLDLFDGRESLRPL----WEQVQGFGEAVAPIMAKAP---QGVHLICYSQGGLVC 118
Query: 384 RAVAQRCPIPPMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYN 539
RA+ + + IS+ G +G FP +R L Y+
Sbjct: 119 RALLSVMDEHNVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYS 168
Query: 540 KAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINE--SYKKNLMALKKFVMVKFL 713
QE + YWHDP +D+Y N S FLA IN ER +++KN + + + V++
Sbjct: 169 PWGQEFSI-CNYWHDPHHDDLYLNASSFLALINGERDHPNATAWRKNFLRVGRLVLIGGP 227
Query: 714 NDSIVDPVDSEWFGFYRSGQAKETI-PLQESTLYTQDRLGLREMDKAGRLVFLGLEG 881
+D ++ P S +FGFY A ET+ ++E +Y +D GL+ + G +V + G
Sbjct: 228 DDGVITPWQSSFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIVRCPMAG 281
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,810,969
Number of extensions: 1487393
Number of successful extensions: 4676
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4673
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 325
Effective length of database: 15,340,888
Effective search space: 4985788600
Effective search space used: 4985788600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000301.1| palmitoyl-protein thioesterase 1 isoform 1 prec... 558 e-159
Alignment gi|NP_001136076.1| palmitoyl-protein thioesterase 1 isoform 2 p... 313 2e-85
Alignment gi|NP_001191032.1| lysosomal thioesterase PPT2 isoform a precur... 79 9e-15
Alignment gi|NP_005146.4| lysosomal thioesterase PPT2 isoform a precursor... 79 9e-15
Alignment gi|NP_619731.2| lysosomal thioesterase PPT2 isoform b precursor... 79 9e-15
>ref|NP_000301.1| palmitoyl-protein thioesterase 1 isoform 1 precursor [Homo
sapiens].
Length = 306
Score = 558 bits (1437), Expect = e-159
Identities = 267/291 (91%), Positives = 278/291 (95%)
Frame = +3
Query: 63 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 242
LP +C + AL H+DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK
Sbjct: 15 LPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 74
Query: 243 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 422
TL+EDVENSFFLNVNSQVTTVCQ LAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP PPMI
Sbjct: 75 TLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMI 134
Query: 423 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 602
NLIS+GGQHQGVFG PRCPGESSHICDFIRKTLNAGAY+K +QERLVQAEYWHDPIKEDV
Sbjct: 135 NLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDV 194
Query: 603 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 782
YRNHSIFLADINQER INESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE
Sbjct: 195 YRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 783 TIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFL 935
TIPLQE++LYTQDRLGL+EMD AG+LVFL EGDHLQL EEWFYAHIIPFL
Sbjct: 255 TIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>ref|NP_001136076.1| palmitoyl-protein thioesterase 1 isoform 2 precursor [Homo
sapiens].
Length = 203
Score = 313 bits (802), Expect = 2e-85
Identities = 154/184 (83%), Positives = 163/184 (88%)
Frame = +3
Query: 384 RAVAQRCPIPPMINLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLV 563
RA+ P P+ +I G GVFG PRCPGESSHICDFIRKTLNAGAY+K +QERLV
Sbjct: 22 RALQHLDPPAPLPLVIWHG---MGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLV 78
Query: 564 QAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDS 743
QAEYWHDPIKEDVYRNHSIFLADINQER INESYKKNLMALKKFVMVKFLNDSIVDPVDS
Sbjct: 79 QAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 138
Query: 744 EWFGFYRSGQAKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHI 923
EWFGFYRSGQAKETIPLQE++LYTQDRLGL+EMD AG+LVFL EGDHLQL EEWFYAHI
Sbjct: 139 EWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHI 198
Query: 924 IPFL 935
IPFL
Sbjct: 199 IPFL 202
Score = 52.8 bits (125), Expect = 7e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Frame = +3
Query: 63 LPGSCLALALGHVDPPAPLPLVIWHGMG---------------DSCCNPLSMGAIKKMVE 197
LP +C + AL H+DPPAPLPLVIWHGMG D L+ GA K+V+
Sbjct: 15 LPWTCASRALQHLDPPAPLPLVIWHGMGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQ 74
Query: 198 KKI 206
+++
Sbjct: 75 ERL 77
>ref|NP_001191032.1| lysosomal thioesterase PPT2 isoform a precursor [Homo sapiens].
Length = 302
Score = 79.0 bits (193), Expect = 9e-15
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 13/287 (4%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 236
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 20 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 74
Query: 237 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 413
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 75 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 127
Query: 414 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 569
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 128 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 176
Query: 570 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 743
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 177 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 236
Query: 744 EWFGFYRSGQAKETI-PLQESTLYTQDRLGLREMDKAGRLVFLGLEG 881
+FGFY A ET+ ++E +Y +D GL+ + G +V + G
Sbjct: 237 SFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIVRCPMAG 280
>ref|NP_005146.4| lysosomal thioesterase PPT2 isoform a precursor [Homo sapiens].
Length = 302
Score = 79.0 bits (193), Expect = 9e-15
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 13/287 (4%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 236
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 20 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 74
Query: 237 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 413
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 75 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 127
Query: 414 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 569
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 128 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 176
Query: 570 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 743
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 177 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 236
Query: 744 EWFGFYRSGQAKETI-PLQESTLYTQDRLGLREMDKAGRLVFLGLEG 881
+FGFY A ET+ ++E +Y +D GL+ + G +V + G
Sbjct: 237 SFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIVRCPMAG 280
>ref|NP_619731.2| lysosomal thioesterase PPT2 isoform b precursor [Homo sapiens].
Length = 308
Score = 79.0 bits (193), Expect = 9e-15
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 13/287 (4%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 236
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 26 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 80
Query: 237 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 413
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 81 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 133
Query: 414 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 569
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 134 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 182
Query: 570 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 743
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 183 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 242
Query: 744 EWFGFYRSGQAKETI-PLQESTLYTQDRLGLREMDKAGRLVFLGLEG 881
+FGFY A ET+ ++E +Y +D GL+ + G +V + G
Sbjct: 243 SFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIVRCPMAG 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,951,528
Number of extensions: 1470280
Number of successful extensions: 4317
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4313
Number of HSP's successfully gapped: 6
Length of query: 431
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,835,944
Effective search space: 4836517744
Effective search space used: 4836517744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032943.2| palmitoyl-protein thioesterase 1 precursor [Mus... 526 e-149
Alignment gi|NP_062314.1| lysosomal thioesterase PPT2 precursor [Mus musc... 73 4e-13
Alignment gi|XP_003084636.1| PREDICTED: palmitoyl-protein thioesterase 1-... 51 2e-06
Alignment gi|XP_003086420.1| PREDICTED: palmitoyl-protein thioesterase 1-... 51 2e-06
>ref|NP_032943.2| palmitoyl-protein thioesterase 1 precursor [Mus musculus].
Length = 306
Score = 526 bits (1355), Expect = e-149
Identities = 248/292 (84%), Positives = 270/292 (92%)
Frame = +3
Query: 63 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 242
LP C A ALGH+DPP+P PLVIWHGMGDSCCNP+SMG IKKMVEK+IPGIYVLSLEIGK
Sbjct: 15 LPWCCAAWALGHLDPPSPPPLVIWHGMGDSCCNPMSMGVIKKMVEKEIPGIYVLSLEIGK 74
Query: 243 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 422
++EDVENSFFLNVN QV VCQIL KDPKLQQGYNA+GFSQGGQFLRAVAQRCP PPM+
Sbjct: 75 NMMEDVENSFFLNVNVQVNMVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCPTPPMM 134
Query: 423 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 602
LIS+GGQHQGVFG PRCPGESSHICDFIRK+LNAGAY+K +QERLVQA+YWHDPIKE V
Sbjct: 135 TLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKLVQERLVQAQYWHDPIKESV 194
Query: 603 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 782
YRN+SIFLADINQER +NESYKKNLMALKKFVMVKF NDSIVDPVDSEWFGFYRSGQAKE
Sbjct: 195 YRNYSIFLADINQERCVNESYKKNLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 783 TIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 938
TIPLQESTLYT+DRLGL++MDKAG+LVFL EGDHLQ+ +EWF AHIIPFL+
Sbjct: 255 TIPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306
>ref|NP_062314.1| lysosomal thioesterase PPT2 precursor [Mus musculus].
Length = 302
Score = 73.2 bits (178), Expect = 4e-13
Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 13/267 (4%)
Frame = +3
Query: 120 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI--GKTLVEDVENSFFLNVNSQ 293
P+++ HG+ DS S + + + G V L++ G+ + + + V
Sbjct: 38 PVIVVHGLFDSS---YSFRHLLDYINETHTGTVVTVLDLFDGRESLRPL----WEQVQGF 90
Query: 294 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFG--- 464
V I+ K P +G + + +SQGG RA+ + + IS+ G +G
Sbjct: 91 REAVVPIMEKAP---EGVHLICYSQGGLVCRALLSVMDNHNVDSFISLSSPQMGQYGDTD 147
Query: 465 -----FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLA 629
FP +R L Y+ QE + YWHDP +D+Y N S FLA
Sbjct: 148 YLKWLFPTS----------MRSNLYRVCYSPWGQEFSI-CNYWHDPHHDDLYLNASSFLA 196
Query: 630 DINQERSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETI-PLQE 800
IN ER +++KN + + + V++ +D ++ P S +FGFY A ET+ ++E
Sbjct: 197 LINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY---DANETVLEMEE 253
Query: 801 STLYTQDRLGLREMDKAGRLVFLGLEG 881
+Y +D GL+ + G +V + G
Sbjct: 254 QPVYLRDSFGLKTLLARGAIVRCPMAG 280
>ref|XP_003084636.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Mus musculus].
Length = 116
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +3
Query: 75 CLALALGHVDPPA---PLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP--GIYVLSLEIG 239
C A L +VDP + PLP+VIW + + + + K+ P G V SL+ G
Sbjct: 19 CDAKGLVYVDPDSESTPLPVVIWIDV------EIFVIMVSMTTSKETPKSGTDVESLQHG 72
Query: 240 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 383
++DVEN L+ SQ+ CQ LA+DPKLQ GY + + G Q L
Sbjct: 73 NNTMKDVENQV-LDACSQL---CQSLAQDPKLQHGYIIVAYFSGCQLL 116
>ref|XP_003086420.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Mus musculus].
Length = 116
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +3
Query: 75 CLALALGHVDPPA---PLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP--GIYVLSLEIG 239
C A L +VDP + PLP+VIW + + + + K+ P G V SL+ G
Sbjct: 19 CDAKGLVYVDPDSESTPLPVVIWIDV------EIFVIMVSMTTSKETPKSGTDVESLQHG 72
Query: 240 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 383
++DVEN L+ SQ+ CQ LA+DPKLQ GY + + G Q L
Sbjct: 73 NNTMKDVENQV-LDACSQL---CQSLAQDPKLQHGYIIVAYFSGCQLL 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,002,175
Number of extensions: 1239540
Number of successful extensions: 3785
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3778
Number of HSP's successfully gapped: 4
Length of query: 431
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 327
Effective length of database: 12,493,815
Effective search space: 4085477505
Effective search space used: 4085477505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127871.1| PREDICTED: palmitoyl-protein thioesterase 1-... 603 e-173
Alignment gi|XP_003356379.1| PREDICTED: palmitoyl-protein thioesterase 1-... 598 e-171
Alignment gi|XP_003356377.1| PREDICTED: palmitoyl-protein thioesterase 1-... 339 2e-93
Alignment gi|NP_001116639.1| lysosomal thioesterase PPT2 [Sus scrofa]. 80 2e-15
>ref|XP_003127871.1| PREDICTED: palmitoyl-protein thioesterase 1-like isoform 1 [Sus
scrofa].
Length = 306
Score = 603 bits (1554), Expect = e-173
Identities = 292/293 (99%), Positives = 293/293 (100%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 239
FLPGSCLALALGHVDPPAPLPLVIWHGMGD+CCNPLSMGAIKKMVEKKIPGIYVLSLEIG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMGDNCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 73
Query: 240 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 419
KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM
Sbjct: 74 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 133
Query: 420 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 599
INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 134 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 193
Query: 600 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 779
VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK
Sbjct: 194 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 253
Query: 780 ETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 938
ETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE
Sbjct: 254 ETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 306
>ref|XP_003356379.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Sus scrofa].
Length = 306
Score = 598 bits (1543), Expect = e-171
Identities = 291/293 (99%), Positives = 291/293 (99%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 239
FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 73
Query: 240 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 419
KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM
Sbjct: 74 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 133
Query: 420 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 599
INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 134 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 193
Query: 600 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 779
VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK
Sbjct: 194 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 253
Query: 780 ETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFLE 938
ETIPLQESTLYTQDRLGLREMDKA RLVFL LEGDHLQLPEEWFYAHIIPFLE
Sbjct: 254 ETIPLQESTLYTQDRLGLREMDKARRLVFLALEGDHLQLPEEWFYAHIIPFLE 306
>ref|XP_003356377.1| PREDICTED: palmitoyl-protein thioesterase 1-like isoform 2 [Sus
scrofa].
Length = 203
Score = 339 bits (869), Expect = 2e-93
Identities = 170/196 (86%), Positives = 174/196 (88%)
Frame = +3
Query: 351 AMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAG 530
A+ F G A+ P P+ +I G GVFGFPRCPGESSHICDFIRKTLNAG
Sbjct: 11 ALAFLPGSCLALALGHVDPPAPLPLVIWHG---MGVFGFPRCPGESSHICDFIRKTLNAG 67
Query: 531 AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF 710
AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF
Sbjct: 68 AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF 127
Query: 711 LNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHL 890
LNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHL
Sbjct: 128 LNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHL 187
Query: 891 QLPEEWFYAHIIPFLE 938
QLPEEWFYAHIIPFLE
Sbjct: 188 QLPEEWFYAHIIPFLE 203
Score = 67.8 bits (164), Expect = 1e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 60 FLPGSCLALALGHVDPPAPLPLVIWHGMG 146
FLPGSCLALALGHVDPPAPLPLVIWHGMG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMG 42
>ref|NP_001116639.1| lysosomal thioesterase PPT2 [Sus scrofa].
Length = 309
Score = 80.1 bits (196), Expect = 2e-15
Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 13/267 (4%)
Frame = +3
Query: 120 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI--GKTLVEDVENSFFLNVNSQ 293
P+++ HG+ DS S + + + + PG V L++ G+ + + + V
Sbjct: 45 PVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL----WEQVQGF 97
Query: 294 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFG--- 464
V I+AK P QG + + +SQGG RA+ + + IS+ G +G
Sbjct: 98 REAVAPIMAKAP---QGVHLICYSQGGLVCRALLSVMDEHNVDSFISLSSPQMGQYGDTD 154
Query: 465 -----FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLA 629
FP +R L Y+ QE + YWHDP +D+Y N S FLA
Sbjct: 155 YLKWLFPTS----------MRSNLYRICYSPWGQEFSI-CNYWHDPHHDDLYLNASSFLA 203
Query: 630 DINQERSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETI-PLQE 800
IN ER +++KN + + + V++ +D ++ P S +FGFY A ET+ ++E
Sbjct: 204 LINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY---DANETVLEMEE 260
Query: 801 STLYTQDRLGLREMDKAGRLVFLGLEG 881
+Y +D GL+ + G +V + G
Sbjct: 261 QLVYLRDSFGLKTLLARGAIVRCPMAG 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,232,237
Number of extensions: 929025
Number of successful extensions: 2905
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2902
Number of HSP's successfully gapped: 5
Length of query: 431
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 329
Effective length of database: 8,804,438
Effective search space: 2896660102
Effective search space used: 2896660102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007482
(1294 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 918 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 918 bits (463), Expect = 0.0
Identities = 475/479 (99%)
Strand = Plus / Plus
Query: 816 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299082 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 89299141
Query: 876 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299142 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 89299201
Query: 936 gagtgaagcccttgtaattggcactagagctcaggaaacccctcctcacacttccaagcc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299202 gagtgaagcccttgtaattggcactagagctcaggaaacccctcctcacacttccaagcc 89299261
Query: 996 agtttcctacgtgcccaaacccgagctcagatccagccagcaactaatccttctcccttg 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299262 agtttcctacgtgcccaaacccgagctcagatccagccagcaactaatccttctcccttg 89299321
Query: 1056 tcttcatctaacatgccctgctcggaaagaactaagatacgaatcttatcctttgtctca 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299322 tcttcatctaacatgccctgctcggaaagaactaagatacgaatcttatcctttgtctca 89299381
Query: 1116 tcctatctgcatacggtgttgcatgcaagtttaattagctaataaccacagagattgttt 1175
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89299382 tcctatctgcatacggtgttgaatgcaagtttaattagctaataaccacagagattgttt 89299441
Query: 1176 tacaaccctttgatgtggtcaaacttggggctcaggagtttactgcagatcggtggcaga 1235
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 89299442 tacaaccctttgatgtggtcaaacttggggctcaggagtttactgcaggtcggtggcaga 89299501
Query: 1236 actgcatcccgccctggaagagactgaacaaaggaaaccagtgggatagattgtaagtc 1294
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299502 actgcgtccagccctggaagagactgaacaaaggaaaccagtgggatagattgtaagtc 89299560
Score = 886 bits (447), Expect = 0.0
Identities = 472/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Plus
Query: 816 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 875
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 89120849 caggaccgtcttgggctaagggaaatggacaaggcacgacggctggtgttccttgctcta 89120908
Query: 876 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89120909 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 89120968
Query: 936 gagtgaagcccttgtaattggcactagagctcaggaaacccctcctcacacttccaagcc 995
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89120969 gagtga-gcccttgtaattggcactagagctcaggaaacccctcctcacacttccaagcc 89121027
Query: 996 agtttcctacgtgcccaaacccgagctcagatccagccagcaactaatccttctcccttg 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89121028 agtttcctacgtgcccaaacccgagctcagatccagccagcaactaatccttctcccttg 89121087
Query: 1056 tcttcatctaacatgccctgctcggaaagaactaagatacgaatcttatcctttgtctca 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89121088 tcttcatctaacatgccctgctcggaaagaactaagatacgaatcttatcctttgtctca 89121147
Query: 1116 tcctatctgcatacggtgttgcatgcaagtttaattagctaataaccacagagattgttt 1175
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89121148 tcctatctgcatacggtgttgaatgcaagtttaattagctaataaccacagagattgttt 89121207
Query: 1176 tacaaccctttgatgtggtcaaacttggggctcaggagtttactgcagatcggtggcaga 1235
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 89121208 tacaaccctttgatgtggtcaaacttggggctcaggagtttactgcaggtcggtggcaga 89121267
Query: 1236 actgcatcccgccctggaagagactgaacaaaggaaaccagtgggatagattgtaagtc 1294
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89121268 actgcgtccagccctggaagagactgaacaaaggaaaccagtgggatagattgtaagtc 89121326
Score = 287 bits (145), Expect = 8e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1 cgatcatgtgatcgatcaagatggcgtcggccagctccttgtggctcttggctcttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89101292 cgatcatgtgatcgatcaagatggcgtcggccagctccttgtggctcttggctcttgctt 89101351
Query: 61 tcctgccgggatcctgcttagccttggcgttggggcatgtcgaccctccagcgccgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89101352 tcctgccgggatcctgcttagccttggcgttggggcatgtcgaccctccagcgccgctgc 89101411
Query: 121 cgctcgtgatctggcatgggatggg 145
|||||||||||||||||||||||||
Sbjct: 89101412 cgctcgtgatctggcatgggatggg 89101436
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Plus
Query: 1 cgatcatgtgatcgatcaagatggcgtcggccagctccttgtggctcttggctcttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89280539 cgatcatgtgatcgatcaagatggcgtcggccagctccttgtggctcttggctcttgctt 89280598
Query: 61 tcctgccgggatcctgcttagccttggcgttggggcatgtcgaccctccagcgccgctgc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89280599 tcctgccggggtcctgcttagccttggcgttggggcatgtcgaccctccagcgccgctgc 89280658
Query: 121 cgctcgtgatctggcatgggatggg 145
|||||||||||||||||||||||||
Sbjct: 89280659 cgctcgtgatctggcatgggatggg 89280683
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 253 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109849 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 89109908
Query: 313 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109909 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 89109968
Query: 373 gccaatttctg 383
|||||||||||
Sbjct: 89109969 gccaatttctg 89109979
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 253 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287969 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 89288028
Query: 313 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89288029 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 89288088
Query: 373 gccaatttctg 383
|||||||||||
Sbjct: 89288089 gccaatttctg 89288099
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 144 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109560 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 89109619
Query: 204 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109620 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 89109671
Score = 214 bits (108), Expect = 9e-53
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 144 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287680 ggagacaactgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 89287739
Query: 204 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287740 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 89287791
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 452 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89113930 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 89113989
Query: 512 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 556
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89113990 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 89114034
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 452 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89292168 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 89292227
Query: 512 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 556
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89292228 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 89292272
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 648 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89117105 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 89117164
Query: 708 tttctcaatgattccattgtggaccccgtagattctgag 746
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89117165 tttctcaatgattccattgtggaccccgtagattctgag 89117203
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 648 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89295340 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 89295399
Query: 708 tttctcaatgattccattgtggaccccgtagattctgag 746
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89295400 tttctcaatgattccattgtggaccccgtagattctgag 89295438
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 556 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89115503 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 89115562
Query: 616 gcattttcctggcagatattaatcaggagaga 647
||||||||||||||||||||||||||||||||
Sbjct: 89115563 gcattttcctggcagatattaatcaggagaga 89115594
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 556 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89293741 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 89293800
Query: 616 gcattttcctggcagatattaatcaggagaga 647
||||||||||||||||||||||||||||||||
Sbjct: 89293801 gcattttcctggcagatattaatcaggagaga 89293832
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 745 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89119261 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 89119320
Query: 805 ccctgtacacacagg 819
|||||||||||||||
Sbjct: 89119321 ccctgtacacacagg 89119335
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 745 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89297499 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 89297558
Query: 805 ccctgtacacacagg 819
|||||||||||||||
Sbjct: 89297559 ccctgtacacacagg 89297573
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 383 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89110558 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 89110617
Query: 443 acaacatcaaggt 455
|||||||||||||
Sbjct: 89110618 acaacatcaaggt 89110630
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 383 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89288678 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 89288737
Query: 443 acaacatcaaggt 455
|||||||||||||
Sbjct: 89288738 acaacatcaaggt 89288750
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,983,196
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 18
Length of query: 1294
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1273
Effective length of database: 2,808,413,156
Effective search space: 3575109947588
Effective search space used: 3575109947588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)