Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032679.1| asialoglycoprotein receptor 1 [Bos taurus]. 270 e-100
Alignment gi|NP_001069420.1| asialoglycoprotein receptor 2 [Bos taurus]. 167 2e-58
Alignment gi|XP_002702184.1| PREDICTED: C-type lectin, superfamily member... 139 1e-47
Alignment gi|XP_002695844.1| PREDICTED: macrophage lectin 2-like [Bos tau... 126 6e-44
Alignment gi|NP_001095313.1| collectin-12 [Bos taurus]. 54 1e-09
Alignment gi|NP_851378.1| versican core protein precursor [Bos taurus]. 43 4e-09
Alignment gi|NP_001192535.1| C-type lectin domain family 4 member G [Bos ... 46 2e-08
Alignment gi|XP_002688906.1| PREDICTED: C-type lectin domain family 4, me... 46 2e-08
Alignment gi|XP_002691277.1| PREDICTED: C-type lectin, superfamily member... 39 9e-08
Alignment gi|XP_588244.4| PREDICTED: C-type lectin, superfamily member 13... 39 9e-08
>ref|NP_001032679.1| asialoglycoprotein receptor 1 [Bos taurus].
Length = 286
Score = 270 bits (689), Expect(2) = e-100
Identities = 134/187 (71%), Positives = 140/187 (74%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MTKEYQDLQHLDNEEND QHRK P P S RRLC+GP S
Sbjct: 1 MTKEYQDLQHLDNEENDHQHRKRPLPPHSFSRRLCTGPSLLLVSMGLSLLLLVVLCVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QNSKLQEEL ALRETFSNLT ST+AKVK LS+QGGNVGRK+KSLESQLEK
Sbjct: 61 QNSKLQEELSALRETFSNLTVSTEAKVKALSVQGGNVGRKVKSLESQLEKQQQELNADHS 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQFVSDLRSLSCQMAVLQGNGSE+ CCPVNW+DYEGSCYWFSRSGKPWPEAEKY
Sbjct: 121 SLLLHVKQFVSDLRSLSCQMAVLQGNGSEKACCPVNWIDYEGSCYWFSRSGKPWPEAEKY 180
Query: 760 CQLENAH 780
CQLENAH
Sbjct: 181 CQLENAH 187
Score = 114 bits (285), Expect(2) = e-100
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VVGSWEEQKFIQH +GPVN+WIGL DQ+ PWKWVDGTDYE+GFKNW EQPDDWY
Sbjct: 190 VVGSWEEQKFIQHHMGPVNTWIGLMDQNGPWKWVDGTDYETGFKNWAPEQPDDWY 244
>ref|NP_001069420.1| asialoglycoprotein receptor 2 [Bos taurus].
Length = 301
Score = 167 bits (422), Expect(2) = 2e-58
Identities = 91/206 (44%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKG-------------------PPPQPSLLRRLCSGPXXX 342
M +++QD+Q LD+EEND Q +G PP QP +L+RLCS
Sbjct: 1 MARDFQDIQQLDSEENDHQLGRGEGPGTCGHSPRREPFWKGMPPHQPLVLQRLCSKFRLS 60
Query: 343 XXXXXXXXXXXXXXXXXXSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKM 522
SQ ++LQ ELQ L+E FSN ++ T + LS GG G K+
Sbjct: 61 LLVLVFNVLLLVAICVTGSQRAQLQGELQTLQEAFSNFSSGTLMDILNLSSHGGFAGDKV 120
Query: 523 KSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYE 702
+ LE++L K +K F DLR+L+CQMA Q NG+E CCPVNWVD++
Sbjct: 121 RLLEAKLGKQQQDLKADHATLRLHLKHFPMDLRTLTCQMAHFQSNGTE--CCPVNWVDHD 178
Query: 703 GSCYWFSRSGKPWPEAEKYCQLENAH 780
GSCYWFSRSGKPW EAEKYCQLENAH
Sbjct: 179 GSCYWFSRSGKPWLEAEKYCQLENAH 204
Score = 78.2 bits (191), Expect(2) = 2e-58
Identities = 32/54 (59%), Positives = 35/54 (64%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDW 949
V+ S EEQKFI P WIGLTD WKWVDGTDY+ +KNW QPDDW
Sbjct: 207 VINSREEQKFIVQHTNPFRVWIGLTDSDGSWKWVDGTDYKHSYKNWDPAQPDDW 260
>ref|XP_002702184.1| PREDICTED: C-type lectin, superfamily member 14 [Bos taurus].
Length = 284
Score = 139 bits (349), Expect(2) = 1e-47
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 1/187 (0%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M+ +Y+DLQ+L++E+ Q+ + + L+RL S P
Sbjct: 1 MSVKYEDLQYLESEKKSQRFTEALFSSQTFLKRLLSSPCLLLLSLALSLLLASICVMGY- 59
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QN K Q +LQ LR +FSN T+++ A+V+ L+ Q ++ K+ SLE++LEK
Sbjct: 60 QNFKFQSDLQTLRTSFSNFTSNSMAEVQALNSQARSLNDKVLSLENRLEKQLEELKAGDS 119
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERT-CCPVNWVDYEGSCYWFSRSGKPWPEAEK 756
V+Q V +L SL+C+M L+ NGS+ T CCP NW+++EG CYWFS KPWPEAEK
Sbjct: 120 EMLLRVQQLVKNLNSLTCKMDALKSNGSQNTACCPANWLEHEGHCYWFSSLRKPWPEAEK 179
Query: 757 YCQLENA 777
CQL+NA
Sbjct: 180 DCQLKNA 186
Score = 70.5 bits (171), Expect(2) = 1e-47
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ S +EQ FIQ + P +W+GL+D WKWVDG+DYE+ KNW+ QPDD++
Sbjct: 190 VINSRDEQDFIQANLHPYFTWMGLSDPDGVWKWVDGSDYETNIKNWKPGQPDDFH 244
>ref|XP_002695844.1| PREDICTED: macrophage lectin 2-like [Bos taurus].
Length = 366
Score = 126 bits (316), Expect(2) = 6e-44
Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QN K Q +LQ LR +FSN T+++ A+V+ L+ Q ++ K+ SLE++LEK
Sbjct: 142 QNFKFQSDLQTLRTSFSNFTSNSMAEVQALNSQARSLNDKVLSLENRLEKQLEELKAGDS 201
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERT-CCPVNWVDYEGSCYWFSRSGKPWPEAEK 756
V+Q V +L SL+C+M L+ NGS+ T CCP NW+++EG CYWFS KPWPEAEK
Sbjct: 202 EMLLRVQQLVKNLNSLTCKMDALKSNGSQNTACCPANWLEHEGHCYWFSSLRKPWPEAEK 261
Query: 757 YCQLENA 777
CQL+NA
Sbjct: 262 DCQLKNA 268
Score = 70.5 bits (171), Expect(2) = 6e-44
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ S +EQ FIQ + P +W+GL+D WKWVDG+DYE+ KNW+ QPDD++
Sbjct: 272 VINSRDEQDFIQANLHPYFTWMGLSDPDGVWKWVDGSDYETNIKNWKPGQPDDFH 326
>ref|NP_001095313.1| collectin-12 [Bos taurus].
Length = 742
Score = 53.9 bits (128), Expect(2) = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Frame = +2
Query: 791 VGSWEEQKFIQHR-VGPVNSWIGLTD--QSXPWKWVDGTDYESGFKNWRXEQPDDW 949
+ + EEQ++I+++ V N WIGLTD Q W+W+DGT E +KNW+ QPD+W
Sbjct: 645 INTGEEQQWIKNQMVAKQNYWIGLTDLEQENEWRWLDGTLLE--YKNWKAGQPDNW 698
Score = 26.9 bits (58), Expect(2) = 1e-09
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++ CY+FS + +A+ +C+ ++H
Sbjct: 607 CLPYWKNFTDKCYYFSTERDFFEDAKLFCERMSSH 641
>ref|NP_851378.1| versican core protein precursor [Bos taurus].
Length = 3381
Score = 43.1 bits (100), Expect(2) = 4e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 3194 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSTLQ--YENWRPNQPDSFF 3244
Score = 36.2 bits (82), Expect(2) = 4e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 3154 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 3188
>ref|NP_001192535.1| C-type lectin domain family 4 member G [Bos taurus].
Length = 290
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 32/123 (26%), Positives = 59/123 (47%)
Frame = +1
Query: 412 LQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXXXXXX 591
L+EE++A ++ T A+++T+S + K+ ES L++
Sbjct: 81 LEEEVRAC----NSCCLRTQAQLQTVSKELTEARSKLLQQESALKELSERVTQNLAEAGR 136
Query: 592 XVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLE 771
+ ++L Q + GN S + C P +W+ ++GSCY+FS W EA+++C+
Sbjct: 137 DRENIRTELFRALEQARL--GNSSCKEC-PESWLPFQGSCYFFSTLRATWVEAQQHCERS 193
Query: 772 NAH 780
AH
Sbjct: 194 GAH 196
Score = 31.2 bits (69), Expect(2) = 2e-08
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGL-----TDQSXPWKWVDGTDYESGFKNWRXEQPDD 946
+VG EEQ F+ W+GL + ++WVDG F +W +P+D
Sbjct: 199 IVGGLEEQGFLSRNTRGRGYWLGLRAVRKVRRIQGYQWVDGV--ALSFSHWNRGEPND 254
>ref|XP_002688906.1| PREDICTED: C-type lectin domain family 4, member G-like [Bos
taurus].
Length = 290
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 32/123 (26%), Positives = 59/123 (47%)
Frame = +1
Query: 412 LQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXXXXXX 591
L+EE++A ++ T A+++T+S + K+ ES L++
Sbjct: 81 LEEEVRAC----NSCCLRTQAQLQTVSKELTEARSKLLQQESALKELSERVTQNLAEAGR 136
Query: 592 XVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLE 771
+ ++L Q + GN S + C P +W+ ++GSCY+FS W EA+++C+
Sbjct: 137 DRENIRTELFRALEQARL--GNSSCKEC-PESWLPFQGSCYFFSTLRATWVEAQQHCERS 193
Query: 772 NAH 780
AH
Sbjct: 194 GAH 196
Score = 31.2 bits (69), Expect(2) = 2e-08
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGL-----TDQSXPWKWVDGTDYESGFKNWRXEQPDD 946
+VG EEQ F+ W+GL + ++WVDG F +W +P+D
Sbjct: 199 IVGGLEEQGFLSRNTRGRGYWLGLRAVRKVRRIQGYQWVDGV--ALSFSHWNRGEPND 254
>ref|XP_002691277.1| PREDICTED: C-type lectin, superfamily member 13-like [Bos taurus].
Length = 629
Score = 38.5 bits (88), Expect(2) = 9e-08
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
W Y GS Y+FS + K W EAE++C AH
Sbjct: 480 WKFYSGSLYYFSSAKKTWQEAEQFCVSHGAH 510
Score = 36.2 bits (82), Expect(2) = 9e-08
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 26/79 (32%)
Frame = +2
Query: 791 VGSWEEQKFIQHRVGPVNSWIGLTDQSXP--WKWVDGTDYE------------------- 907
V S EE+ F+ V WIGLTD W+W DGT ++
Sbjct: 514 VTSEEEKTFLIQFTSSVYHWIGLTDHGTEGHWRWTDGTAFDRARSRAPGPKGPCPHLKAL 573
Query: 908 -----SGFKNWRXEQPDDW 949
G W QPD+W
Sbjct: 574 NMNSGGGDLFWAENQPDNW 592
>ref|XP_588244.4| PREDICTED: C-type lectin, superfamily member 13-like [Bos taurus].
Length = 629
Score = 38.5 bits (88), Expect(2) = 9e-08
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
W Y GS Y+FS + K W EAE++C AH
Sbjct: 480 WKFYSGSLYYFSSAKKTWQEAEQFCVSHGAH 510
Score = 36.2 bits (82), Expect(2) = 9e-08
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 26/79 (32%)
Frame = +2
Query: 791 VGSWEEQKFIQHRVGPVNSWIGLTDQSXP--WKWVDGTDYE------------------- 907
V S EE+ F+ V WIGLTD W+W DGT ++
Sbjct: 514 VTSEEEKTFLIQFTSSVYHWIGLTDHGTEGHWRWTDGTAFDRARSRAPGPKGPCPHLKAL 573
Query: 908 -----SGFKNWRXEQPDDW 949
G W QPD+W
Sbjct: 574 NMNSGGGDLFWAENQPDNW 592
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,521,508
Number of extensions: 1046993
Number of successful extensions: 5718
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5683
Number of HSP's successfully gapped: 31
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546579.2| PREDICTED: similar to Asialoglycoprotein recept... 241 1e-90
Alignment gi|XP_856943.1| PREDICTED: similar to C-type lectin, superfamil... 171 2e-60
Alignment gi|XP_848725.1| PREDICTED: similar to C-type lectin, superfamil... 164 3e-58
Alignment gi|XP_856984.1| PREDICTED: similar to C-type lectin, superfamil... 162 8e-58
Alignment gi|XP_856860.1| PREDICTED: similar to C-type lectin, superfamil... 129 8e-48
Alignment gi|XP_849057.1| PREDICTED: similar to collectin sub-family memb... 55 1e-11
Alignment gi|XP_853402.1| PREDICTED: similar to CD209d antigen [Canis fam... 51 7e-10
Alignment gi|XP_854311.1| PREDICTED: similar to C-type lectin superfamily... 46 8e-10
Alignment gi|XP_538544.2| PREDICTED: similar to C-type lectin, superfamil... 46 3e-09
Alignment gi|XP_546039.2| PREDICTED: similar to chondroitin sulfate prote... 43 4e-09
>ref|XP_546579.2| PREDICTED: similar to Asialoglycoprotein receptor 1 (ASGPR 1)
(ASGP-R 1) (Hepatic lectin H1) [Canis familiaris].
Length = 284
Score = 241 bits (616), Expect(2) = 1e-90
Identities = 121/187 (64%), Positives = 132/187 (70%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MT +YQDLQHLDNE+ND R+ PP LLRRLCSGP S
Sbjct: 1 MTNDYQDLQHLDNEDNDHHLRQVPPAPQPLLRRLCSGPCLLLLSLGLSVLLLVVVCVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QNSKL+ ELQALRETFSN TAST+ +VK LS QGGNVGRKMKSLESQLEK
Sbjct: 61 QNSKLRGELQALRETFSNFTASTEVEVKALSSQGGNVGRKMKSLESQLEKQQKDLSEDHS 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQFVSDLRSLSCQ+A L GNGS TCCPVNW++YEGSCYWFSRSGK WPEA+KY
Sbjct: 121 DLLLHVKQFVSDLRSLSCQIAALHGNGSTLTCCPVNWLEYEGSCYWFSRSGKSWPEADKY 180
Query: 760 CQLENAH 780
CQLE+AH
Sbjct: 181 CQLESAH 187
Score = 111 bits (277), Expect(2) = 1e-90
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQKFIQH +GPVN+W+GLTDQS PWKWVDGTDYE+GFKNWR EQPDDWY
Sbjct: 190 VVNSREEQKFIQHHMGPVNTWMGLTDQSGPWKWVDGTDYETGFKNWRPEQPDDWY 244
>ref|XP_856943.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform
2 isoform 3 [Canis familiaris].
Length = 287
Score = 171 bits (433), Expect(2) = 2e-60
Identities = 86/190 (45%), Positives = 112/190 (58%), Gaps = 3/190 (1%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M+ +Y+ QHL++E+ Q R+G PP L +LCSGP S
Sbjct: 1 MSMQYEKFQHLESEKQSQGSREGLPPPLPFLHQLCSGPRPLLFSLGLSLLLLVGICVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDA---KVKTLSMQGGNVGRKMKSLESQLEKXXXXXXX 570
QNS+ Q +L LR TFSNLT++ A +V+ L QGG + + SL+S++E
Sbjct: 61 QNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVTSLKSEVENHKQDLQA 120
Query: 571 XXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEA 750
V+Q DL++LSCQMA LQ NGS TCC NW++YEGSCYWFSRSGK WPEA
Sbjct: 121 GHSDTVLRVQQLAKDLKALSCQMATLQNNGSRNTCCAPNWLEYEGSCYWFSRSGKSWPEA 180
Query: 751 EKYCQLENAH 780
+KYCQLE+AH
Sbjct: 181 DKYCQLESAH 190
Score = 80.5 bits (197), Expect(2) = 2e-60
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q +G +W+GL+D WKWVDGTDYE+ FKNW+ QPDDW+
Sbjct: 193 VVNSREEQTFVQEHIGSSYTWMGLSDPEGIWKWVDGTDYETNFKNWKPGQPDDWH 247
>ref|XP_848725.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform
2 isoform 1 [Canis familiaris].
Length = 295
Score = 164 bits (414), Expect(2) = 3e-58
Identities = 86/198 (43%), Positives = 112/198 (56%), Gaps = 11/198 (5%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M+ +Y+ QHL++E+ Q R+G PP L +LCSGP S
Sbjct: 1 MSMQYEKFQHLESEKQSQGSREGLPPPLPFLHQLCSGPRPLLFSLGLSLLLLVGICVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDA---KVKTLSMQGGNVGRKMKSLESQLEKXXXXXXX 570
QNS+ Q +L LR TFSNLT++ A +V+ L QGG + + SL+S++E
Sbjct: 61 QNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVTSLKSEVENHKQDLQA 120
Query: 571 XXXXXXXXVKQFVSDLRSLSCQMAVLQGNG--------SERTCCPVNWVDYEGSCYWFSR 726
V+Q DL++LSCQMA LQ NG S TCC NW++YEGSCYWFSR
Sbjct: 121 GHSDTVLRVQQLAKDLKALSCQMATLQNNGEGWVAAGGSRNTCCAPNWLEYEGSCYWFSR 180
Query: 727 SGKPWPEAEKYCQLENAH 780
SGK WPEA+KYCQLE+AH
Sbjct: 181 SGKSWPEADKYCQLESAH 198
Score = 80.5 bits (197), Expect(2) = 3e-58
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q +G +W+GL+D WKWVDGTDYE+ FKNW+ QPDDW+
Sbjct: 201 VVNSREEQTFVQEHIGSSYTWMGLSDPEGIWKWVDGTDYETNFKNWKPGQPDDWH 255
>ref|XP_856984.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform
2 isoform 4 [Canis familiaris].
Length = 311
Score = 162 bits (411), Expect(2) = 8e-58
Identities = 89/214 (41%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M+ +Y+ QHL++E+ Q R+G PP L +LCSGP S
Sbjct: 1 MSMQYEKFQHLESEKQSQGSREGLPPPLPFLHQLCSGPRPLLFSLGLSLLLLVGICVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDA---KVKTLSMQGG---------------------- 504
QNS+ Q +L LR TFSNLT++ A +V+ L QGG
Sbjct: 61 QNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVTSLKSEVENHKQDLQA 120
Query: 505 --NVGRKMKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCC 678
++ K+ LES+LEK V+Q DL++LSCQMA LQ NGS TCC
Sbjct: 121 ARSLNDKVFFLESKLEKELQELQAGHSDTVLRVQQLAKDLKALSCQMATLQNNGSRNTCC 180
Query: 679 PVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
NW++YEGSCYWFSRSGK WPEA+KYCQLE+AH
Sbjct: 181 APNWLEYEGSCYWFSRSGKSWPEADKYCQLESAH 214
Score = 80.5 bits (197), Expect(2) = 8e-58
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q +G +W+GL+D WKWVDGTDYE+ FKNW+ QPDDW+
Sbjct: 217 VVNSREEQTFVQEHIGSSYTWMGLSDPEGIWKWVDGTDYETNFKNWKPGQPDDWH 271
>ref|XP_856860.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform
2 isoform 2 [Canis familiaris].
Length = 272
Score = 129 bits (324), Expect(2) = 8e-48
Identities = 69/154 (44%), Positives = 88/154 (57%), Gaps = 27/154 (17%)
Frame = +1
Query: 400 QNSKLQEELQALRETFSNLTASTDA---KVKTLSMQGG---------------------- 504
++S+ Q +L LR TFSNLT++ A +V+ L QGG
Sbjct: 22 EDSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVTSLKSEVENHKQDLQA 81
Query: 505 --NVGRKMKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCC 678
++ K+ LES+LEK V+Q DL++LSCQMA LQ NGS TCC
Sbjct: 82 ARSLNDKVFFLESKLEKELQELQAGHSDTVLRVQQLAKDLKALSCQMATLQNNGSRNTCC 141
Query: 679 PVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
NW++YEGSCYWFSRSGK WPEA+KYCQLE+AH
Sbjct: 142 APNWLEYEGSCYWFSRSGKSWPEADKYCQLESAH 175
Score = 80.5 bits (197), Expect(2) = 8e-48
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q +G +W+GL+D WKWVDGTDYE+ FKNW+ QPDDW+
Sbjct: 178 VVNSREEQTFVQEHIGSSYTWMGLSDPEGIWKWVDGTDYETNFKNWKPGQPDDWH 232
>ref|XP_849057.1| PREDICTED: similar to collectin sub-family member 12 isoform II
[Canis familiaris].
Length = 757
Score = 55.1 bits (131), Expect(2) = 1e-11
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = +2
Query: 791 VGSWEEQKFIQHR-VGPVNSWIGLTDQSXP--WKWVDGTDYESGFKNWRXEQPDDW 949
+ + EEQ++I+ + VG + WIGLTD WKW+DGT E +KNW+ QPDDW
Sbjct: 644 INTREEQQWIKKQMVGRESHWIGLTDSEHENEWKWLDGTSPE--YKNWKAGQPDDW 697
Score = 33.1 bits (74), Expect(2) = 1e-11
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 664 ERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
E CP +W ++ CY+FS + + +A+ +C+ +++H
Sbjct: 602 EANGCPPHWKNFTDKCYYFSVEKEIFEDAKLFCEDKSSH 640
>ref|XP_853402.1| PREDICTED: similar to CD209d antigen [Canis familiaris].
Length = 336
Score = 50.8 bits (120), Expect(2) = 7e-10
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 667 RTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
R CP W+ +EG CY+FS S K W EA K+CQ +H
Sbjct: 180 RVTCPEGWLPFEGKCYYFSPSTKSWDEARKFCQENYSH 217
Score = 31.2 bits (69), Expect(2) = 7e-10
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 809 QKFIQHRVG-PVNSWIGLTDQSXP--WKWVDGTDYESGFKNWRXEQPDD 946
Q F+ G P W+GL D+ WKW+DG+ F W E+P++
Sbjct: 256 QNFVAKAHGSPRVYWLGLNDRDHEGNWKWLDGSPVTLSF--WDPEEPNN 302
>ref|XP_854311.1| PREDICTED: similar to C-type lectin superfamily member 9
(Macrophage-inducible C-type lectin) [Canis familiaris].
Length = 226
Score = 45.8 bits (107), Expect(2) = 8e-10
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 652 GNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
G GS + CCP +WV ++ SCY FS + W + K C AH
Sbjct: 72 GLGSVKNCCPSDWVHFQSSCYLFSTNTMSWTSSLKNCSNMGAH 114
Score = 36.2 bits (82), Expect(2) = 8e-10
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 788 VVGSWEEQKFIQH-RVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDD 946
V+ + EEQ+F+ + +IGLTDQ W+WVDGT + W +P++
Sbjct: 117 VINTQEEQEFLFFAKPKRKEFYIGLTDQVKEGQWQWVDGTPFTESLSFWDVGEPNN 172
>ref|XP_538544.2| PREDICTED: similar to C-type lectin, superfamily member 13 [Canis
familiaris].
Length = 528
Score = 46.2 bits (108), Expect(2) = 3e-09
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 791 VGSWEEQKFIQHRVGPVNSWIGLTD--QSXPWKWVDGTDYESGFKN--WRXEQPDDW 949
V S EEQ F+ + WIGLTD W+W DGT + +G W QPD+W
Sbjct: 433 VTSEEEQAFLTRFTSTSHHWIGLTDGGHEGVWRWADGTPFSAGRSPVFWGSHQPDNW 489
Score = 33.9 bits (76), Expect(2) = 3e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
W + S Y+FS K W EAE++C + AH
Sbjct: 399 WEAHGASLYYFSHVKKSWHEAERFCVSQGAH 429
>ref|XP_546039.2| PREDICTED: similar to chondroitin sulfate proteoglycan 2 (versican)
[Canis familiaris].
Length = 3861
Score = 43.1 bits (100), Expect(2) = 4e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 3674 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSTLQ--YENWRPNQPDSFF 3724
Score = 36.2 bits (82), Expect(2) = 4e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 3634 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 3668
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,139,505
Number of extensions: 1083695
Number of successful extensions: 6110
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6073
Number of HSP's successfully gapped: 30
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001662.1| asialoglycoprotein receptor 1 isoform a [Homo s... 245 4e-92
Alignment gi|NP_001184145.1| asialoglycoprotein receptor 1 isoform b [Hom... 203 2e-79
Alignment gi|NP_550435.1| asialoglycoprotein receptor 2 isoform b [Homo s... 181 4e-65
Alignment gi|NP_550436.1| asialoglycoprotein receptor 2 isoform c [Homo s... 175 3e-63
Alignment gi|NP_001188281.1| asialoglycoprotein receptor 2 isoform d [Hom... 171 4e-62
Alignment gi|NP_550434.1| asialoglycoprotein receptor 2 isoform a [Homo s... 165 3e-60
Alignment gi|NP_001172.1| asialoglycoprotein receptor 2 isoform a [Homo s... 165 3e-60
Alignment gi|NP_006335.2| C-type lectin domain family 10 member A isoform... 159 7e-56
Alignment gi|NP_878910.1| C-type lectin domain family 10 member A isoform... 144 1e-51
Alignment gi|NP_055173.1| C-type lectin domain family 4 member E [Homo sa... 48 4e-11
>ref|NP_001662.1| asialoglycoprotein receptor 1 isoform a [Homo sapiens].
Length = 291
Score = 245 bits (625), Expect(2) = 4e-92
Identities = 125/188 (66%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQ-QHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXX 396
MTKEYQDLQHLDNEE+D Q RKGPPP LL+RLCSGP
Sbjct: 1 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG 60
Query: 397 SQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXX 576
SQNS+LQEEL+ LRETFSN TAST+A+VK LS QGGNVGRKMKSLESQLEK
Sbjct: 61 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH 120
Query: 577 XXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEK 756
VKQFVSDLRSLSCQMA LQGNGSERTCCPVNWV++E SCYWFSRSGK W +A+
Sbjct: 121 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN 180
Query: 757 YCQLENAH 780
YC+LE+AH
Sbjct: 181 YCRLEDAH 188
Score = 112 bits (280), Expect(2) = 4e-92
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV SWEEQKF+QH +GPVN+W+GL DQ+ PWKWVDGTDYE+GFKNWR EQPDDWY
Sbjct: 191 VVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWY 245
>ref|NP_001184145.1| asialoglycoprotein receptor 1 isoform b [Homo sapiens].
Length = 252
Score = 203 bits (516), Expect(2) = 2e-79
Identities = 107/187 (57%), Positives = 121/187 (64%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MTKEYQDLQHLDNEE+D +
Sbjct: 1 MTKEYQDLQHLDNEESDHHQLR-------------------------------------- 22
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
++S+LQEEL+ LRETFSN TAST+A+VK LS QGGNVGRKMKSLESQLEK
Sbjct: 23 KDSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDHS 82
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQFVSDLRSLSCQMA LQGNGSERTCCPVNWV++E SCYWFSRSGK W +A+ Y
Sbjct: 83 SLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADNY 142
Query: 760 CQLENAH 780
C+LE+AH
Sbjct: 143 CRLEDAH 149
Score = 112 bits (280), Expect(2) = 2e-79
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV SWEEQKF+QH +GPVN+W+GL DQ+ PWKWVDGTDYE+GFKNWR EQPDDWY
Sbjct: 152 VVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWY 206
>ref|NP_550435.1| asialoglycoprotein receptor 2 isoform b [Homo sapiens].
Length = 287
Score = 181 bits (460), Expect(2) = 4e-65
Identities = 88/187 (47%), Positives = 117/187 (62%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M K++QD+Q L +EEND +GPPP L +RLCS S
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
Q+++LQ EL++L+E FSN ++ST +V+ +S GG+VG K+ SL ++LEK
Sbjct: 61 QSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQDLKADHD 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
+K F DLR ++CQM +L NGS+RTCCPVNWV+++GSCYWFS SGK W EAEKY
Sbjct: 121 ALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAWAEAEKY 180
Query: 760 CQLENAH 780
CQLENAH
Sbjct: 181 CQLENAH 187
Score = 85.9 bits (211), Expect(2) = 4e-65
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ SWEEQKFI P N+WIGLTD WKWVDGTDY +KNW QPD+W+
Sbjct: 190 VINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWH 244
>ref|NP_550436.1| asialoglycoprotein receptor 2 isoform c [Homo sapiens].
Length = 292
Score = 175 bits (444), Expect(2) = 3e-63
Identities = 88/192 (45%), Positives = 117/192 (60%), Gaps = 5/192 (2%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
M K++QD+Q L +EEND +GPPP L +RLCS S
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTGS 60
Query: 400 QN-----SKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXX 564
Q+ ++LQ EL++L+E FSN ++ST +V+ +S GG+VG K+ SL ++LEK
Sbjct: 61 QSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQDL 120
Query: 565 XXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWP 744
+K F DLR ++CQM +L NGS+RTCCPVNWV+++GSCYWFS SGK W
Sbjct: 121 KADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAWA 180
Query: 745 EAEKYCQLENAH 780
EAEKYCQLENAH
Sbjct: 181 EAEKYCQLENAH 192
Score = 85.9 bits (211), Expect(2) = 3e-63
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ SWEEQKFI P N+WIGLTD WKWVDGTDY +KNW QPD+W+
Sbjct: 195 VINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWH 249
>ref|NP_001188281.1| asialoglycoprotein receptor 2 isoform d [Homo sapiens].
Length = 306
Score = 171 bits (434), Expect(2) = 4e-62
Identities = 89/206 (43%), Positives = 117/206 (56%), Gaps = 19/206 (9%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHR-------------------KGPPPQPSLLRRLCSGPXXX 342
M K++QD+Q L +EEND KGPPP L +RLCS
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 343 XXXXXXXXXXXXXXXXXXSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKM 522
SQ+++LQ EL++L+E FSN ++ST +V+ +S GG+VG K+
Sbjct: 61 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI 120
Query: 523 KSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYE 702
SL ++LEK +K F DLR ++CQM +L NGS+RTCCPVNWV+++
Sbjct: 121 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ 180
Query: 703 GSCYWFSRSGKPWPEAEKYCQLENAH 780
GSCYWFS SGK W EAEKYCQLENAH
Sbjct: 181 GSCYWFSHSGKAWAEAEKYCQLENAH 206
Score = 85.9 bits (211), Expect(2) = 4e-62
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ SWEEQKFI P N+WIGLTD WKWVDGTDY +KNW QPD+W+
Sbjct: 209 VINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWH 263
>ref|NP_550434.1| asialoglycoprotein receptor 2 isoform a [Homo sapiens].
Length = 311
Score = 165 bits (418), Expect(2) = 3e-60
Identities = 89/211 (42%), Positives = 117/211 (55%), Gaps = 24/211 (11%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHR-------------------KGPPPQPSLLRRLCSGPXXX 342
M K++QD+Q L +EEND KGPPP L +RLCS
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 343 XXXXXXXXXXXXXXXXXXSQN-----SKLQEELQALRETFSNLTASTDAKVKTLSMQGGN 507
SQ+ ++LQ EL++L+E FSN ++ST +V+ +S GG+
Sbjct: 61 LLALSFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS 120
Query: 508 VGRKMKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVN 687
VG K+ SL ++LEK +K F DLR ++CQM +L NGS+RTCCPVN
Sbjct: 121 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN 180
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
WV+++GSCYWFS SGK W EAEKYCQLENAH
Sbjct: 181 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAH 211
Score = 85.9 bits (211), Expect(2) = 3e-60
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ SWEEQKFI P N+WIGLTD WKWVDGTDY +KNW QPD+W+
Sbjct: 214 VINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWH 268
>ref|NP_001172.1| asialoglycoprotein receptor 2 isoform a [Homo sapiens].
Length = 311
Score = 165 bits (418), Expect(2) = 3e-60
Identities = 89/211 (42%), Positives = 117/211 (55%), Gaps = 24/211 (11%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHR-------------------KGPPPQPSLLRRLCSGPXXX 342
M K++QD+Q L +EEND KGPPP L +RLCS
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 343 XXXXXXXXXXXXXXXXXXSQN-----SKLQEELQALRETFSNLTASTDAKVKTLSMQGGN 507
SQ+ ++LQ EL++L+E FSN ++ST +V+ +S GG+
Sbjct: 61 LLALSFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS 120
Query: 508 VGRKMKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVN 687
VG K+ SL ++LEK +K F DLR ++CQM +L NGS+RTCCPVN
Sbjct: 121 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN 180
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
WV+++GSCYWFS SGK W EAEKYCQLENAH
Sbjct: 181 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAH 211
Score = 85.9 bits (211), Expect(2) = 3e-60
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ SWEEQKFI P N+WIGLTD WKWVDGTDY +KNW QPD+W+
Sbjct: 214 VINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWH 268
>ref|NP_006335.2| C-type lectin domain family 10 member A isoform 2 [Homo sapiens].
Length = 292
Score = 159 bits (401), Expect(2) = 7e-56
Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MT+ Y++ Q+L+N+ Q + GP P SLL+RLCSGP
Sbjct: 1 MTRTYENFQYLENKVKVQGFKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVGF 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QNSK Q +L LR FSN T++T A+++ L+ QG ++ + SL++++E
Sbjct: 61 QNSKFQRDLVTLRTDFSNFTSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAVHS 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSER----TCCPVNWVDYEGSCYWFSRSGKPWPE 747
V+Q V DL+ L+CQ+A L NG E TCCPVNWV+++ SCYWFS SG W E
Sbjct: 121 EMLLRVQQLVQDLKKLTCQVATLNNNGEEASTEGTCCPVNWVEHQDSCYWFSHSGMSWAE 180
Query: 748 AEKYCQLENAH 780
AEKYCQL+NAH
Sbjct: 181 AEKYCQLKNAH 191
Score = 77.8 bits (190), Expect(2) = 7e-56
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDW 949
V+ S EEQ F+Q +G +W+GL+D WKWVDGTDY +GF+NW+ QPDDW
Sbjct: 194 VINSREEQNFVQKYLGSAYTWMGLSDPEGAWKWVDGTDYATGFQNWKPGQPDDW 247
>ref|NP_878910.1| C-type lectin domain family 10 member A isoform 1 [Homo sapiens].
Length = 316
Score = 144 bits (364), Expect(2) = 1e-51
Identities = 80/215 (37%), Positives = 110/215 (51%), Gaps = 28/215 (13%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MT+ Y++ Q+L+N+ Q + GP P SLL+RLCSGP
Sbjct: 1 MTRTYENFQYLENKVKVQGFKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVGF 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLE----------- 546
QNSK Q +L LR FSN T++T A+++ L+ QG ++ + SL++++E
Sbjct: 61 QNSKFQRDLVTLRTDFSNFTSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAGVS 120
Query: 547 ----------------KXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGS-ERTC 675
V+Q V DL+ L+CQ+A L N S E TC
Sbjct: 121 ELQEHTTQKAHLGHCPHCPSVCVPVHSEMLLRVQQLVQDLKKLTCQVATLNNNASTEGTC 180
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
CPVNWV+++ SCYWFS SG W EAEKYCQL+NAH
Sbjct: 181 CPVNWVEHQDSCYWFSHSGMSWAEAEKYCQLKNAH 215
Score = 77.8 bits (190), Expect(2) = 1e-51
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDW 949
V+ S EEQ F+Q +G +W+GL+D WKWVDGTDY +GF+NW+ QPDDW
Sbjct: 218 VINSREEQNFVQKYLGSAYTWMGLSDPEGAWKWVDGTDYATGFQNWKPGQPDDW 271
>ref|NP_055173.1| C-type lectin domain family 4 member E [Homo sapiens].
Length = 219
Score = 47.8 bits (112), Expect(2) = 4e-11
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +1
Query: 601 QFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
Q + LSC G+GS + CCP+NW ++ SCY+FS W + K C AH
Sbjct: 58 QLPENFTELSCYN---YGSGSVKNCCPLNWEYFQSSCYFFSTDTISWALSLKNCSAMGAH 114
Score = 38.5 bits (88), Expect(2) = 4e-11
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSW-IGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDD 946
V+ S EEQ+F+ ++ + + IGL+DQ W+WVDGT W +P++
Sbjct: 117 VINSQEEQEFLSYKKPKMREFFIGLSDQVVEGQWQWVDGTPLTKSLSFWDVGEPNN 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,211,620
Number of extensions: 1041741
Number of successful extensions: 5687
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 5638
Number of HSP's successfully gapped: 100
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033844.1| asialoglycoprotein receptor 1 [Mus musculus]. 224 5e-82
Alignment gi|NP_660119.1| macrophage galactose N-acetyl-galactosamine spe... 127 2e-49
Alignment gi|NP_031519.1| asialoglycoprotein receptor 2 [Mus musculus]. 142 1e-48
Alignment gi|NP_001191181.1| macrophage asialoglycoprotein-binding protei... 123 2e-48
Alignment gi|NP_034926.1| macrophage asialoglycoprotein-binding protein 1... 122 4e-48
Alignment gi|NP_058031.2| C-type lectin domain family 4 member F [Mus mus... 49 1e-13
Alignment gi|NP_569716.2| collectin-12 [Mus musculus]. 57 1e-12
Alignment gi|NP_001074718.1| versican core protein isoform 1 [Mus musculu... 43 4e-09
Alignment gi|NP_062262.2| versican core protein isoform 2 [Mus musculus]. 43 5e-09
Alignment gi|NP_001127946.1| versican core protein isoform 3 [Mus musculu... 43 5e-09
>ref|NP_033844.1| asialoglycoprotein receptor 1 [Mus musculus].
Length = 284
Score = 224 bits (572), Expect(2) = 5e-82
Identities = 109/187 (58%), Positives = 129/187 (68%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MTK+YQD QHLDN+ + Q R+GPPP P LL+RLCSG S
Sbjct: 1 MTKDYQDFQHLDNDNDHHQLRRGPPPTPRLLQRLCSGSRLLLLSSSLSILLLVVVCVITS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QNS+L+E+L ALR+ FSNLT ST+ +VK LS QG +VGRKMK +ES+LEK
Sbjct: 61 QNSQLREDLLALRQNFSNLTVSTEDQVKALSTQGSSVGRKMKLVESKLEKQQKDLTEDHS 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQ VSD+RSLSCQMA +GNGSERTCCP+NWV+YEGSCYWFS S +PW EA+KY
Sbjct: 121 SLLLHVKQLVSDVRSLSCQMAAFRGNGSERTCCPINWVEYEGSCYWFSSSVRPWTEADKY 180
Query: 760 CQLENAH 780
CQLENAH
Sbjct: 181 CQLENAH 187
Score = 99.0 bits (245), Expect(2) = 5e-82
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S +EQ F+Q +GP+N+WIGLTDQ+ PWKWVDGTDYE+GF+NWR EQPD+WY
Sbjct: 190 VVTSRDEQNFLQRHMGPLNTWIGLTDQNGPWKWVDGTDYETGFQNWRPEQPDNWY 244
>ref|NP_660119.1| macrophage galactose N-acetyl-galactosamine specific lectin 2 [Mus
musculus].
Length = 332
Score = 127 bits (319), Expect(2) = 2e-49
Identities = 74/223 (33%), Positives = 106/223 (47%), Gaps = 36/223 (16%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPP------------PQPSLLRRLCSGPXXXXXXXXXX 363
MT Y++ Q+L+ EE +Q+ R G P S L R+ S
Sbjct: 1 MTMRYENFQNLEREEKNQEMRNGDKKGGMESPKFALIPSQSFLWRILSWTHLLLFSLGLS 60
Query: 364 XXXXXXXXXXXSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGN------------ 507
SQNS+L+ +L LR N T+ A+ ++L + N
Sbjct: 61 LLLLVVISVIGSQNSQLRRDLGTLRAILDNTTSKIKAEFQSLDSRADNFEKGISSLKVDV 120
Query: 508 ------------VGRKMKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQ 651
+ +K+ SLES LEK V+Q +DL++L+CQ+A L+
Sbjct: 121 EDHRQELQAGRDLSQKVTSLESTLEKREQALKTDLSDLTDHVQQLETDLKALTCQLANLK 180
Query: 652 GNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
NGSE CCP++W ++EGSCYWFS S K WPEA+KYC+LEN+H
Sbjct: 181 NNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSH 223
Score = 87.8 bits (216), Expect(2) = 2e-49
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q+R+ V SW+GLTDQ+ PW+WVDGTD++ GFKNWR QPD+W+
Sbjct: 226 VVNSLEEQNFLQNRLANVLSWMGLTDQNGPWRWVDGTDFDKGFKNWRPLQPDNWH 280
>ref|NP_031519.1| asialoglycoprotein receptor 2 [Mus musculus].
Length = 301
Score = 142 bits (357), Expect(2) = 1e-48
Identities = 81/206 (39%), Positives = 105/206 (50%), Gaps = 19/206 (9%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQ-------------------HRKGPPPQPSLLRRLCSGPXXX 342
M K+ QD+Q LD+EEND Q H KG P +RLCS
Sbjct: 1 MEKDCQDIQQLDSEENDHQLSGDDEHGSHVQDPRIENPHWKGQPLSRPFPQRLCSTFRLS 60
Query: 343 XXXXXXXXXXXXXXXXXXSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKM 522
SQ+ +LQEE + L+ETFSN ++ST + L GG+ +
Sbjct: 61 LLALAFNILLLVVICVVSSQSIQLQEEFRTLKETFSNFSSSTLMEFGALDTLGGSTNAIL 120
Query: 523 KSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYE 702
S +QLE+ +K F DLR+L+CQ+A Q NG+E CCPVNWV++
Sbjct: 121 TSWLAQLEEKQQQLKADHSTLLFHLKHFPMDLRTLTCQLAYFQSNGTE--CCPVNWVEFG 178
Query: 703 GSCYWFSRSGKPWPEAEKYCQLENAH 780
GSCYWFSR G W EA++YCQLENAH
Sbjct: 179 GSCYWFSRDGLTWAEADQYCQLENAH 204
Score = 70.5 bits (171), Expect(2) = 1e-48
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDW 949
V+ S EEQ F+ + WIGLTD+ WKWVDGTDY S ++NW QPD+W
Sbjct: 207 VINSREEQDFVVKHRSQFHIWIGLTDRDGSWKWVDGTDYRSNYRNWAFTQPDNW 260
>ref|NP_001191181.1| macrophage asialoglycoprotein-binding protein 1 isoform 1 [Mus
musculus].
Length = 305
Score = 123 bits (309), Expect(2) = 2e-48
Identities = 72/207 (34%), Positives = 103/207 (49%), Gaps = 24/207 (11%)
Frame = +1
Query: 232 YQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXSQNSK 411
Y++LQ+ EE Q+ K P Q S L R+ S SQNS+
Sbjct: 3 YENLQNSRIEEKTQEPGKAAPSQ-SFLWRILSWTHLLLFSLGLSLLLLVVVSVIGSQNSQ 61
Query: 412 LQEELQALRETFSNLTASTDAKVKTLSMQ------------------------GGNVGRK 519
L+ +L LR T N T+ A+ ++L + G ++ +K
Sbjct: 62 LRRDLGTLRATLDNTTSKIKAEFQSLDSRADSFEKGISSLKVDVEDHRQELQAGRDLSQK 121
Query: 520 MKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDY 699
+ SLES +EK V+Q DL++L+CQ+A L+ NGSE CCP++W ++
Sbjct: 122 VTSLESTVEKREQALKTDLSDLTDHVQQLRKDLKALTCQLANLKNNGSEVACCPLHWTEH 181
Query: 700 EGSCYWFSRSGKPWPEAEKYCQLENAH 780
EGSCYWFS S K WPEA+KYC+LEN+H
Sbjct: 182 EGSCYWFSESEKSWPEADKYCRLENSH 208
Score = 88.2 bits (217), Expect(2) = 2e-48
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q+R+ V SWIGLTDQ+ PW+WVDGTD+E GFKNW QPD+W+
Sbjct: 211 VVNSLEEQNFLQNRLANVVSWIGLTDQNGPWRWVDGTDFEKGFKNWAPLQPDNWF 265
>ref|NP_034926.1| macrophage asialoglycoprotein-binding protein 1 isoform 2 [Mus
musculus].
Length = 304
Score = 122 bits (306), Expect(2) = 4e-48
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 24/207 (11%)
Frame = +1
Query: 232 YQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXSQNSK 411
Y++LQ+ EE Q+ G P S L R+ S SQNS+
Sbjct: 3 YENLQNSRIEEKTQE--PGKAPSQSFLWRILSWTHLLLFSLGLSLLLLVVVSVIGSQNSQ 60
Query: 412 LQEELQALRETFSNLTASTDAKVKTLSMQ------------------------GGNVGRK 519
L+ +L LR T N T+ A+ ++L + G ++ +K
Sbjct: 61 LRRDLGTLRATLDNTTSKIKAEFQSLDSRADSFEKGISSLKVDVEDHRQELQAGRDLSQK 120
Query: 520 MKSLESQLEKXXXXXXXXXXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDY 699
+ SLES +EK V+Q DL++L+CQ+A L+ NGSE CCP++W ++
Sbjct: 121 VTSLESTVEKREQALKTDLSDLTDHVQQLRKDLKALTCQLANLKNNGSEVACCPLHWTEH 180
Query: 700 EGSCYWFSRSGKPWPEAEKYCQLENAH 780
EGSCYWFS S K WPEA+KYC+LEN+H
Sbjct: 181 EGSCYWFSESEKSWPEADKYCRLENSH 207
Score = 88.2 bits (217), Expect(2) = 4e-48
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VV S EEQ F+Q+R+ V SWIGLTDQ+ PW+WVDGTD+E GFKNW QPD+W+
Sbjct: 210 VVNSLEEQNFLQNRLANVVSWIGLTDQNGPWRWVDGTDFEKGFKNWAPLQPDNWF 264
>ref|NP_058031.2| C-type lectin domain family 4 member F [Mus musculus].
Length = 548
Score = 48.9 bits (115), Expect(2) = 1e-13
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +2
Query: 791 VGSWEEQKFIQHRVGPVNSWIGLTDQSXP--WKWVDGTDYES----GFKNWRXEQPDDW 949
V S EEQ F+ + WIGLTDQ W+WVDGT + + GF W QPD+W
Sbjct: 450 VTSQEEQAFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPFNNAQSKGF--WGKNQPDNW 506
Score = 45.8 bits (107), Expect(2) = 1e-13
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Frame = +1
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLE--KXXXXXXXX 573
Q ELQ LR S+++A + V+ L +M+SL++ L+ K
Sbjct: 325 QMKDASRELQTLRRDLSDVSA-LKSNVQMLQSNLQRAKTEMQSLKADLQATKALTAKIQG 383
Query: 574 XXXXXXXVKQFVS-DLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEA 750
+++ V+ + Q VLQ NW + G+ Y+FSR KPW EA
Sbjct: 384 EQNRLGALQEAVAAQKQEQKTQNQVLQ-------LIAQNWKYFNGNFYYFSRDKKPWREA 436
Query: 751 EKYCQLENAH 780
EK+C + AH
Sbjct: 437 EKFCTSQGAH 446
>ref|NP_569716.2| collectin-12 [Mus musculus].
Length = 742
Score = 56.6 bits (135), Expect(2) = 1e-12
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Frame = +2
Query: 791 VGSWEEQKFIQ-HRVGPVNSWIGLTD--QSXPWKWVDGTDYESGFKNWRXEQPDDW 949
+ S EEQ++I+ H VG + WIGLTD Q WKW+DG+ + +KNW+ QPD+W
Sbjct: 645 INSREEQQWIKKHTVGRESHWIGLTDSEQESEWKWLDGSPVD--YKNWKAGQPDNW 698
Score = 34.3 bits (77), Expect(2) = 1e-12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 661 SERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
SE CP +W ++ CY+FS + + +A+ +C+ +++H
Sbjct: 602 SEVNGCPPHWKNFTDKCYYFSLEKEIFEDAKLFCEDKSSH 641
>ref|NP_001074718.1| versican core protein isoform 1 [Mus musculus].
Length = 3354
Score = 42.7 bits (99), Expect(2) = 4e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 3167 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSALQ--YENWRPNQPDSFF 3217
Score = 36.2 bits (82), Expect(2) = 4e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 3127 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 3161
>ref|NP_062262.2| versican core protein isoform 2 [Mus musculus].
Length = 2394
Score = 42.7 bits (99), Expect(2) = 5e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 2207 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSALQ--YENWRPNQPDSFF 2257
Score = 36.2 bits (82), Expect(2) = 5e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 2167 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 2201
>ref|NP_001127946.1| versican core protein isoform 3 [Mus musculus].
Length = 1615
Score = 42.7 bits (99), Expect(2) = 5e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 1428 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSALQ--YENWRPNQPDSFF 1478
Score = 36.2 bits (82), Expect(2) = 5e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 1388 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 1422
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,155,021
Number of extensions: 847874
Number of successful extensions: 4347
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4304
Number of HSP's successfully gapped: 49
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354992.1| PREDICTED: asialoglycoprotein receptor 1-lik... 298 e-111
Alignment gi|XP_003354993.1| PREDICTED: asialoglycoprotein receptor 1-lik... 251 2e-97
Alignment gi|XP_003358279.1| PREDICTED: LOW QUALITY PROTEIN: c-type lecti... 128 9e-47
Alignment gi|XP_003131990.2| PREDICTED: asialoglycoprotein receptor 2-lik... 182 2e-46
Alignment gi|XP_003358278.1| PREDICTED: arachidonate 12-lipoxygenase, 12S... 182 2e-46
Alignment gi|XP_003358275.1| PREDICTED: arachidonate 12-lipoxygenase, 12S... 70 2e-12
Alignment gi|XP_003123415.1| PREDICTED: c-type lectin domain family 17, m... 47 1e-10
Alignment gi|XP_003125094.2| PREDICTED: c-type lectin domain family 4 mem... 45 2e-10
Alignment gi|NP_001137589.1| C-type lectin domain family 4 member G [Sus ... 50 3e-10
Alignment gi|NP_001193358.1| versican core protein [Sus scrofa]. 43 2e-09
>ref|XP_003354992.1| PREDICTED: asialoglycoprotein receptor 1-like isoform 1 [Sus
scrofa].
Length = 286
Score = 298 bits (763), Expect(2) = e-111
Identities = 149/187 (79%), Positives = 149/187 (79%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MTKEYQDLQHLDNEENDQQHRKGPPPQ SL RRLCSGP S
Sbjct: 1 MTKEYQDLQHLDNEENDQQHRKGPPPQQSLFRRLCSGPCLLLISMGLSLLLLVVVCVIGS 60
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEK
Sbjct: 61 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKQQQDLSEDHS 120
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY
Sbjct: 121 SLLLHVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 180
Query: 760 CQLENAH 780
CQLENAH
Sbjct: 181 CQLENAH 187
Score = 123 bits (309), Expect(2) = e-111
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VVGSWEEQKFIQH VGPVNSWIGLTDQS PWKWVDGTDYESGFKNWR EQPDDWY
Sbjct: 190 VVGSWEEQKFIQHHVGPVNSWIGLTDQSGPWKWVDGTDYESGFKNWRPEQPDDWY 244
>ref|XP_003354993.1| PREDICTED: asialoglycoprotein receptor 1-like isoform 2 [Sus
scrofa].
Length = 247
Score = 251 bits (641), Expect(2) = 2e-97
Identities = 132/187 (70%), Positives = 133/187 (71%)
Frame = +1
Query: 220 MTKEYQDLQHLDNEENDQQHRKGPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXS 399
MTKEYQDLQHLDNEENDQQHRK
Sbjct: 1 MTKEYQDLQHLDNEENDQQHRK-------------------------------------- 22
Query: 400 QNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXX 579
+SKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEK
Sbjct: 23 -DSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKQQQDLSEDHS 81
Query: 580 XXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 759
VKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY
Sbjct: 82 SLLLHVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKY 141
Query: 760 CQLENAH 780
CQLENAH
Sbjct: 142 CQLENAH 148
Score = 123 bits (309), Expect(2) = 2e-97
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
VVGSWEEQKFIQH VGPVNSWIGLTDQS PWKWVDGTDYESGFKNWR EQPDDWY
Sbjct: 151 VVGSWEEQKFIQHHVGPVNSWIGLTDQSGPWKWVDGTDYESGFKNWRPEQPDDWY 205
>ref|XP_003358279.1| PREDICTED: LOW QUALITY PROTEIN: c-type lectin domain family 10
member A-like [Sus scrofa].
Length = 368
Score = 128 bits (322), Expect(2) = 9e-47
Identities = 71/188 (37%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Frame = +1
Query: 286 GPPPQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXXXSQNSKLQEELQALRETFSNLTAS 465
GPPP +LL+RL SGP SQNSKLQ +L L TFSN ++
Sbjct: 84 GPPPLQTLLQRLLSGPRPCLLSLGLSLLLLVGICAIASQNSKLQRDLVTLTTTFSNFISN 143
Query: 466 TDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXXXXXXX----------------- 594
T A+++ L+ Q ++ K+ SLES+LEK
Sbjct: 144 TSAEIRALNFQAQSLNDKVLSLESRLEKEQKELQTGKGLKKQKPHPGHCPHCPSVCVPGY 203
Query: 595 ------VKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEK 756
V+Q V SL+C+M+ L+ + S +CCP +W+++ GSCYWFS S KPW EAEK
Sbjct: 204 SEMLLRVQQLVETTDSLTCRMSALKSHDSRDSCCPTDWLEHRGSCYWFSGSEKPWXEAEK 263
Query: 757 YCQLENAH 780
CQLENAH
Sbjct: 264 XCQLENAH 271
Score = 77.0 bits (188), Expect(2) = 9e-47
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
V+ S EEQ FIQ +G +W+GL+D WKW DGTDYE+ F+NW+ QPDDW+
Sbjct: 274 VINSREEQNFIQAHMGSFYTWMGLSDPDRVWKWADGTDYETNFQNWKPGQPDDWH 328
>ref|XP_003131990.2| PREDICTED: asialoglycoprotein receptor 2-like [Sus scrofa].
Length = 285
Score = 182 bits (462), Expect = 2e-46
Identities = 93/189 (49%), Positives = 121/189 (64%), Gaps = 1/189 (0%)
Frame = +1
Query: 217 SMTKEYQDLQHLDNEENDQQHRKGPP-PQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXX 393
SM +++QD+Q LD+EEND Q +G P PQP +L+RLCS
Sbjct: 75 SMARDFQDIQQLDSEENDHQLGRGTPLPQPLVLQRLCSKLRLSLLVLGFNVLMLVAVCVV 134
Query: 394 XSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXX 573
SQ ++LQ ELQ L+ETFSN ++S ++ TLS +GG+ G K+ SLE+++EK
Sbjct: 135 GSQRTQLQMELQTLKETFSNFSSSLLMEMLTLSTRGGSAGDKVTSLEAKMEKQQQDLKAD 194
Query: 574 XXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAE 753
+K F D+R+L+C++ LQ NG+E CCPVNWVDYEGSCYWFSRSGK W EAE
Sbjct: 195 HATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAE 252
Query: 754 KYCQLENAH 780
KYCQLENAH
Sbjct: 253 KYCQLENAH 261
>ref|XP_003358278.1| PREDICTED: arachidonate 12-lipoxygenase, 12S-type-like [Sus scrofa].
Length = 695
Score = 182 bits (462), Expect = 2e-46
Identities = 93/189 (49%), Positives = 121/189 (64%), Gaps = 1/189 (0%)
Frame = +1
Query: 217 SMTKEYQDLQHLDNEENDQQHRKGPP-PQPSLLRRLCSGPXXXXXXXXXXXXXXXXXXXX 393
SM +++QD+Q LD+EEND Q +G P PQP +L+RLCS
Sbjct: 485 SMARDFQDIQQLDSEENDHQLGRGTPLPQPLVLQRLCSKLRLSLLVLGFNVLMLVAVCVV 544
Query: 394 XSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXX 573
SQ ++LQ ELQ L+ETFSN ++S ++ TLS +GG+ G K+ SLE+++EK
Sbjct: 545 GSQRTQLQMELQTLKETFSNFSSSLLMEMLTLSTRGGSAGDKVTSLEAKMEKQQQDLKAD 604
Query: 574 XXXXXXXVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAE 753
+K F D+R+L+C++ LQ NG+E CCPVNWVDYEGSCYWFSRSGK W EAE
Sbjct: 605 HATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAE 662
Query: 754 KYCQLENAH 780
KYCQLENAH
Sbjct: 663 KYCQLENAH 671
>ref|XP_003358275.1| PREDICTED: arachidonate 12-lipoxygenase, 12S-type-like [Sus
scrofa].
Length = 875
Score = 70.1 bits (170), Expect = 2e-12
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2
Query: 809 QKFIQHRVGPVNSWIGLTDQSXPWKWVDGTDYESGFKNWRXEQPDDWY 952
Q FIQ +G +W+GL+D WKW DGTDYE+ F+NW+ QPDDW+
Sbjct: 249 QNFIQAHMGSFYTWMGLSDPDRVWKWADGTDYETNFQNWKPGQPDDWH 296
>ref|XP_003123415.1| PREDICTED: c-type lectin domain family 17, member A-like [Sus
scrofa].
Length = 327
Score = 47.0 bits (110), Expect(2) = 1e-10
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 667 RTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
R CP W+ ++G CY+FS + K W EA ++CQ +H
Sbjct: 200 RVTCPEGWLPFQGKCYYFSPNTKSWDEARQFCQENYSH 237
Score = 37.0 bits (84), Expect(2) = 1e-10
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVG-PVNSWIGLTDQS--XPWKWVDGTDYESGFKNWRXEQPDD 946
++ ++ EQ F+ G P W+GLTD++ W+W+DG+ F W E+P++
Sbjct: 240 IISNFAEQNFVAKAHGSPRVYWLGLTDKNLEGTWRWLDGSPVTLSF--WDPEEPNN 293
>ref|XP_003125094.2| PREDICTED: c-type lectin domain family 4 member F [Sus scrofa].
Length = 583
Score = 44.7 bits (104), Expect(2) = 2e-10
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 791 VGSWEEQKFIQHRVGPVNSWIGLTDQSXP--WKWVDGTDYESGFKN--WRXEQPDDW 949
V S EEQ F++ WIGLTD W+W DGT + + W QPD+W
Sbjct: 490 VTSEEEQGFVKQFTSSSYYWIGLTDSGSEGIWRWTDGTPFNNAQSRRFWSENQPDNW 546
Score = 38.5 bits (88), Expect(2) = 2e-10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 688 WVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
W Y G+ Y+FS+ K W EAE++C + AH
Sbjct: 456 WKPYNGNLYYFSQVKKSWQEAEQFCVSQGAH 486
>ref|NP_001137589.1| C-type lectin domain family 4 member G [Sus scrofa].
Length = 290
Score = 49.7 bits (117), Expect(2) = 3e-10
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +1
Query: 412 LQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKXXXXXXXXXXXXXX 591
L+EE++A ++ A+++T+ Q G K+ ES L++
Sbjct: 81 LKEEVRAC----NSCCLGVQAQLQTVHTQLGEAKAKLLEQESALKELSERVTQGLAEAGR 136
Query: 592 XVKQFVSDL-RSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQL 768
+ S+L R L + Q + E+ CP +W+ ++GSCY+FS G W EA+ +C+
Sbjct: 137 DRENIRSELFREL--ERVRFQNSSCEQ--CPKSWLPFQGSCYFFSAQGATWVEAQSHCEG 192
Query: 769 ENAH 780
AH
Sbjct: 193 AGAH 196
Score = 32.7 bits (73), Expect(2) = 3e-10
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 788 VVGSWEEQKFIQHRVGPVNSWIGL-----TDQSXPWKWVDGTDYESGFKNWRXEQPDD 946
+VG EEQ F+ W+GL + ++WVDG F +W +P+D
Sbjct: 199 IVGGLEEQGFLSRNTAGRGYWLGLRAVRRARKIQSYQWVDGVPL--SFSHWNLGEPND 254
>ref|NP_001193358.1| versican core protein [Sus scrofa].
Length = 3382
Score = 43.1 bits (100), Expect(2) = 2e-09
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 797 SWEEQKFIQHRVGPVNSWIGLTDQ--SXPWKWVDGTDYESGFKNWRXEQPDDWY 952
S EEQ F+ +RVG WIGL D+ ++W DG+ + ++NWR QPD ++
Sbjct: 3195 SHEEQMFV-NRVGHDYQWIGLNDKMFEHDFRWTDGSTLQ--YENWRPNQPDSFF 3245
Score = 36.2 bits (82), Expect(2) = 2e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 676 CPVNWVDYEGSCYWFSRSGKPWPEAEKYCQLENAH 780
C W ++G CY + + W AE+ C+L+ AH
Sbjct: 3155 CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH 3189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,632,030
Number of extensions: 681167
Number of successful extensions: 3682
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3662
Number of HSP's successfully gapped: 24
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007487
(989 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 311 4e-82
Sscrofa_Chr12 174 6e-41
>Sscrofa_Chr03
|| Length = 144787322
Score = 311 bits (157), Expect = 4e-82
Identities = 160/161 (99%)
Strand = Plus / Minus
Query: 7 agacgcacagggctcagggcccgcgtatggaccctgccccctccgctcccactttccagg 66
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139815056 agacgcacaggactcagggcccgcgtatggaccctgccccctccgctcccactttccagg 139814997
Query: 67 gctgtccgcgcaccctaattctccagccttcggccgctctcccagccgggcatctgcaca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139814996 gctgtccgcgcaccctaattctccagccttcggccgctctcccagccgggcatctgcaca 139814937
Query: 127 gcagtgagggacccaggagtccaccttgagaccttcagcaa 167
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 139814936 gcagtgagggacccaggagtccaccttgagaccttcagcaa 139814896
Score = 289 bits (146), Expect = 1e-75
Identities = 153/154 (99%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 658 ggctctgaaaggacctgctgcccggttaactgggtggactatgaaggcagctgctactgg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139812095 ggctctgaaaggacctgctgcccggttaactgggtggactatgaaggcagctgctactgg 139812036
Query: 718 ttctcccgctctgggaagccctggccggaggccgagaagtactgccagctggagaacgcc 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139812035 ttctcccgctctgggaagccctggccggaggccgagaagtactgccagctggagaacgcc 139811976
Query: 778 cacctcgntggtggtgggctcctgggaggagcag 811
||||||| ||||||||||||||||||||||||||
Sbjct: 139811975 cacctcg-tggtggtgggctcctgggaggagcag 139811943
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 168 cctcagccttaaccttggcggtgacctggttcgaggtctagccagccttagcatgacaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139814686 cctcagccttaaccttggcggtgacctggttcgaggtctagccagccttagcatgacaaa 139814627
Query: 228 ggaatatcaggatctgcagcatctggacaatgaggagaatgaccagcagcacagaaaagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139814626 ggaatatcaggatctgcagcatctggacaatgaggagaatgaccagcagcacagaaaagg 139814567
Score = 220 bits (111), Expect = 1e-54
Identities = 117/119 (98%)
Strand = Plus / Minus
Query: 285 agggccacctcctcaaccgtcactccttcggcgtctctgctcgggaccctgcctcctcct 344
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 139813005 agggccacctcctcaacagtcactctttcggcgtctctgctcgggaccctgcctcctcct 139812946
Query: 345 gatttccatgggccttagcctcctgctgctggtagttgtctgtgtgatcggatcccaga 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139812945 gatttccatgggccttagcctcctgctgctggtagttgtctgtgtgatcggatcccaga 139812887
Score = 206 bits (104), Expect = 2e-50
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 809 cagaaatttatccagcaccgcgtgggccctgtgaactcctggatcggcctcactgatcag 868
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 139811858 cagaaatttatccagcaccacgtgggccctgtgaactcctggatcggcctcactgatcag 139811799
Query: 869 agcnggccctggaagtgggtggatggcaccgactacgagtcgggtttcaag 919
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139811798 agcgggccctggaagtgggtggatggcaccgactacgagtcgggtttcaag 139811748
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 404 actccaagctgcaggaggagctgcaggccctgagagagaccttcagcaacctcaccgcga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139812759 actccaagctgcaggaggagctgcaggccctgagagagaccttcagcaacctcaccgcga 139812700
Query: 464 gcacagacgccaaggtcaagaccctcagcatgcaggg 500
|||||||||||||||||||||||||||||||||||||
Sbjct: 139812699 gcacagacgccaaggtcaagaccctcagcatgcaggg 139812663
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 570 agatcactccagcttgctgctccacgtgaagcagtttgtgtccgacctgcggagcctcag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139812278 agatcactccagcttgctgctccacgtgaagcagtttgtgtccgacctgcggagcctcag 139812219
Query: 630 ctgtcagatggctgtcctccagggcaatgg 659
||||||||||||||||||||||||||||||
Sbjct: 139812218 ctgtcagatggctgtcctccagggcaatgg 139812189
Score = 129 bits (65), Expect = 3e-27
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 499 ggaggaaatgtgggcagaaagatgaagtccctggagtcccagctggagaaacagcaacag 558
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 139812586 ggaggaaatgtgggcagaaagatgaagtctctggagtcccagctggagaaacagcagcag 139812527
Query: 559 gacctgagtgaag 571
|||||||||||||
Sbjct: 139812526 gacctgagtgaag 139812514
Score = 113 bits (57), Expect = 2e-22
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 919 gaactggaganccgagcagccngatgactggtacgggcatgggctcgggggtgggcgagg 978
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 139811612 gaactggagacccgagcagccggatgactggtacgggcatgggctcgggggt-ggcgagg 139811554
Query: 979 actgtgcccac 989
|||||||||||
Sbjct: 139811553 actgtgcccac 139811543
>Sscrofa_Chr12
|| Length = 63588571
Score = 174 bits (88), Expect = 6e-41
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 673 tgctgcccggttaactgggtggactatgaaggcagctgctactggttctcccgctctggg 732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 54779514 tgctgcccggttaactgggtggactatgaaggcagctgctactggttctctcgctctggg 54779455
Query: 733 aagccctggccggaggccgagaagtactgccagctggagaacgcccacctcg 784
||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 54779454 aaggcctgggccgaggctgagaagtactgccagctagagaacgcccacctcg 54779403
Score = 91.7 bits (46), Expect = 7e-16
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 702 aggcagctgctactggttctcccgctctgggaagccctggccggaggccgagaagtactg 761
||||||||||||||||||||| |||||| |||||||||| | ||||| |||||||| ||
Sbjct: 54752566 aggcagctgctactggttctctggctctgagaagccctgg-ctgaggctgagaagtagtg 54752508
Query: 762 ccagctggagaacgcccacctc 783
|||||||||||| |||||||||
Sbjct: 54752507 ccagctggagaatgcccacctc 54752486
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,174,649
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 11
Length of query: 989
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 968
Effective length of database: 2,808,413,156
Effective search space: 2718543935008
Effective search space used: 2718543935008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)