Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039619.1| arginase-1 [Bos taurus]. 521 e-154
Alignment gi|NP_001017942.1| arginase-2, mitochondrial precursor [Bos tau... 374 e-104
Alignment gi|XP_002694189.1| PREDICTED: agmatinase-like [Bos taurus]. 66 8e-11
Alignment gi|XP_592369.3| PREDICTED: agmatine ureohydrolase (agmatinase) ... 66 8e-11
>ref|NP_001039619.1| arginase-1 [Bos taurus].
Length = 322
Score = 521 bits (1342), Expect(2) = e-154
Identities = 255/289 (88%), Positives = 269/289 (93%)
Frame = +2
Query: 203 MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN 382
MS K QSIG+IGAPFSKGQPRGGVEEGPT LRKAGLLEKLKE ECDVKDYGDL FAD +
Sbjct: 1 MSSKPQSIGVIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKELECDVKDYGDLSFADNLD 60
Query: 383 DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV 562
D+PFQIVKNPR VGKA+++LADVVAE+KK GR SLVLGGDHS+AIGSISGHARVHPDLCV
Sbjct: 61 DSPFQIVKNPRCVGKASEKLADVVAEVKKTGRISLVLGGDHSLAIGSISGHARVHPDLCV 120
Query: 563 IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR 742
IWVDAHTDINTPLTT TGNLHGQPVSFLLKELKEK+PEVPG WV PC+SAKDIVYIGLR
Sbjct: 121 IWVDAHTDINTPLTTKTGNLHGQPVSFLLKELKEKMPEVPGFYWVAPCISAKDIVYIGLR 180
Query: 743 DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF 922
DVDP EHYILKTLGIKYFSM EVDKLGIGKVMEE FSYLLGRKKRPIHLSFDVDGLDP F
Sbjct: 181 DVDPGEHYILKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPSF 240
Query: 923 TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKKV 1069
TPATGTPV GGL+YREG+YITEEIYKTGLLSGLDIMEVNPSLGKT ++V
Sbjct: 241 TPATGTPVQGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEV 289
Score = 45.4 bits (106), Expect(2) = e-154
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +1
Query: 1048 GEDTEESTRTVNTAVALVLACXWSAREGNHSLLITLNHPK 1167
G+ EE TRTVNT VA+ +AC AREGNH + L+ PK
Sbjct: 283 GKTPEEVTRTVNTTVAITMACFGVAREGNHKPIDYLSPPK 322
>ref|NP_001017942.1| arginase-2, mitochondrial precursor [Bos taurus].
Length = 354
Score = 374 bits (961), Expect = e-104
Identities = 176/283 (62%), Positives = 227/283 (80%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R AGL+++L + C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAVRXAGLMKRLSDLGCHLKDFGDLNFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ G + + +GGDHS+AIG+ISGHAR PDL VIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSGGYSCVTVGGDHSLAIGTISGHARHCPDLGVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+P++PG SW+ PC+S+ IVYIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSPSIVYIGLRDVDPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREGIYITEEI+ TGLLS LD++EVNP L ++++
Sbjct: 265 TPVVGGLTYREGIYITEEIHSTGLLSALDLVEVNPRLAVSEEE 307
>ref|XP_002694189.1| PREDICTED: agmatinase-like [Bos taurus].
Length = 361
Score = 65.9 bits (159), Expect = 8e-11
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 3/273 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKN 409
+G P G R G GP +R+ +L + + L AD+ D +
Sbjct: 85 VGVPLDIGTSNRPGARFGPRRIREESVLLRTTNPSTGAVPFQFLRVADL-GDVNVNLYNL 143
Query: 410 PRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDI 589
S +VA G L LGGDH++ + A H + ++ VDAH D+
Sbjct: 144 QDSCRLIRADYQKIVAA----GCVPLTLGGDHTITYPILQAIAEKHGPVGLVHVDAHMDM 199
Query: 590 NTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA--EH 763
HG P + E GL L K +V IG+R +
Sbjct: 200 -ADKALGEKLYHGTPFRRCVDE---------GL------LDCKRVVQIGIRGSSTTLDTY 243
Query: 764 YILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATGTP 943
++ G + + + +M E + GR PI++SFD+DGLDP + P TGTP
Sbjct: 244 RYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGR---PIYISFDIDGLDPAYAPGTGTP 300
Query: 944 VHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
GL+ + + I ++ G D++EV+P
Sbjct: 301 EIAGLTPSQALEIIRGCQGLNVV-GCDLVEVSP 332
>ref|XP_592369.3| PREDICTED: agmatine ureohydrolase (agmatinase) [Bos taurus].
Length = 361
Score = 65.9 bits (159), Expect = 8e-11
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 3/273 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKN 409
+G P G R G GP +R+ +L + + L AD+ D +
Sbjct: 85 VGVPLDIGTSNRPGARFGPRRIREESVLLRTTNPSTGAVPFQFLRVADL-GDVNVNLYNL 143
Query: 410 PRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDI 589
S +VA G L LGGDH++ + A H + ++ VDAH D+
Sbjct: 144 QDSCRLIRADYQKIVAA----GCVPLTLGGDHTITYPILQAIAEKHGPVGLVHVDAHMDM 199
Query: 590 NTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA--EH 763
HG P + E GL L K +V IG+R +
Sbjct: 200 -ADKALGEKLYHGTPFRRCVDE---------GL------LDCKRVVQIGIRGSSTTLDTY 243
Query: 764 YILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATGTP 943
++ G + + + +M E + GR PI++SFD+DGLDP + P TGTP
Sbjct: 244 RYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGR---PIYISFDIDGLDPAYAPGTGTP 300
Query: 944 VHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
GL+ + + I ++ G D++EV+P
Sbjct: 301 EIAGLTPSQALEIIRGCQGLNVV-GCDLVEVSP 332
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,157,337
Number of extensions: 1365666
Number of successful extensions: 3576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3573
Number of HSP's successfully gapped: 5
Length of query: 426
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,207,134
Effective search space: 4560490014
Effective search space used: 4560490014
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532053.2| PREDICTED: similar to arginase, type I [Canis f... 505 e-151
Alignment gi|XP_537488.2| PREDICTED: similar to Arginase II, mitochondria... 381 e-106
Alignment gi|XP_866822.1| PREDICTED: similar to Arginase II, mitochondria... 365 e-101
Alignment gi|XP_866782.1| PREDICTED: similar to Arginase II, mitochondria... 360 2e-99
Alignment gi|NP_001138592.1| arginase-2, mitochondrial [Canis lupus famil... 357 1e-98
Alignment gi|XP_866797.1| PREDICTED: similar to Arginase II, mitochondria... 198 1e-50
Alignment gi|XP_544555.2| PREDICTED: similar to Agmatinase, mitochondrial... 71 3e-12
>ref|XP_532053.2| PREDICTED: similar to arginase, type I [Canis familiaris].
Length = 403
Score = 505 bits (1300), Expect(2) = e-151
Identities = 246/270 (91%), Positives = 258/270 (95%)
Frame = +2
Query: 260 PRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKNPRSVGKANQQ 439
PRGGVE+GPTALRKAGLLEKLKEQ+CDVKDYGD+ F DVP+D PFQIVKNPRSVGKAN+Q
Sbjct: 101 PRGGVEKGPTALRKAGLLEKLKEQDCDVKDYGDVPFVDVPSDPPFQIVKNPRSVGKANEQ 160
Query: 440 LADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTTTGN 619
LA VVAE+KKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTT+GN
Sbjct: 161 LAGVVAEVKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTTSGN 220
Query: 620 LHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPAEHYILKTLGIKYFS 799
LHGQPVSFLLKELK KIP+VPG SWVTPCLSAKDIVYIGLRDVDP EHYILKTLGIKYFS
Sbjct: 221 LHGQPVSFLLKELKGKIPDVPGFSWVTPCLSAKDIVYIGLRDVDPGEHYILKTLGIKYFS 280
Query: 800 MIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATGTPVHGGLSYREGIY 979
M EVDKLGIGKVMEEA SYLLGRKKRPIHLSFDVDGLDP FTPATGTPV GGLSYREG+Y
Sbjct: 281 MTEVDKLGIGKVMEEALSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVTGGLSYREGLY 340
Query: 980 ITEEIYKTGLLSGLDIMEVNPSLGKTQKKV 1069
ITEEIYKTGLLSGLDIMEVNPSLGKT +++
Sbjct: 341 ITEEIYKTGLLSGLDIMEVNPSLGKTPEEI 370
Score = 49.7 bits (117), Expect(2) = e-151
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +1
Query: 1048 GEDTEESTRTVNTAVALVLACXWSAREGNHSLLITLNHPK 1167
G+ EE TRTVNTAVA+ LAC AREGNH + LN PK
Sbjct: 364 GKTPEEITRTVNTAVAITLACFGVAREGNHKPIDYLNPPK 403
>ref|XP_537488.2| PREDICTED: similar to Arginase II, mitochondrial precursor
(Non-hepatic arginase) (Kidney-type arginase) isoform 1
[Canis familiaris].
Length = 354
Score = 381 bits (978), Expect = e-106
Identities = 175/283 (61%), Positives = 230/283 (81%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+P++PG SW+ PC+S+ +I+YIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSPNIIYIGLRDVDPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREG+YITEEI+ TGLLS LD++EVNP L ++++
Sbjct: 265 TPVVGGLTYREGMYITEEIHNTGLLSALDLVEVNPQLAASEEE 307
>ref|XP_866822.1| PREDICTED: similar to Arginase II, mitochondrial precursor
(Non-hepatic arginase) (Kidney-type arginase) isoform 4
[Canis familiaris].
Length = 350
Score = 365 bits (938), Expect = e-101
Identities = 172/283 (60%), Positives = 225/283 (79%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+ SW+ PC+S+ +I+YIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVR----FSWIKPCISSPNIIYIGLRDVDPP 200
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 201 EHFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 260
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREG+YITEEI+ TGLLS LD++EVNP L ++++
Sbjct: 261 TPVVGGLTYREGMYITEEIHNTGLLSALDLVEVNPQLAASEEE 303
>ref|XP_866782.1| PREDICTED: similar to Arginase II, mitochondrial precursor
(Non-hepatic arginase) (Kidney-type arginase) isoform 2
[Canis familiaris].
Length = 293
Score = 360 bits (923), Expect = 2e-99
Identities = 165/263 (62%), Positives = 214/263 (81%), Gaps = 1/263 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+P++PG SW+ PC+S+ +I+YIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSPNIIYIGLRDVDPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTG 1006
TPV GGL+YREG+YITEEI+ TG
Sbjct: 265 TPVVGGLTYREGMYITEEIHNTG 287
>ref|NP_001138592.1| arginase-2, mitochondrial [Canis lupus familiaris].
Length = 374
Score = 357 bits (916), Expect = 1e-98
Identities = 175/304 (57%), Positives = 228/304 (75%), Gaps = 22/304 (7%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEK-------------IPEVPGLSWVTPCLSAK 718
H DINTPLTT++GNLHGQPVSFLL+EL++K +P++PG SW+ PC+S+
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVSGLKRKDFYEEWVPQLPGFSWIKPCISSP 204
Query: 719 DIVYIGLRDVDPAEH--------YILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKK 874
+I+YIGLRDVDP E +ILK I+YFSM ++D+LGI KVME+ F L+G K+
Sbjct: 205 NIIYIGLRDVDPPEQTPSFLFHSFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIG-KQ 263
Query: 875 RPIHLSFDVDGLDPFFTPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGK 1054
RPIHLSFD+D DP PATGTPV GGL+YREG+YITEEI+ TGLLS LD++EVNP L
Sbjct: 264 RPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYITEEIHNTGLLSALDLVEVNPQLAA 323
Query: 1055 TQKK 1066
++++
Sbjct: 324 SEEE 327
>ref|XP_866797.1| PREDICTED: similar to Arginase II, mitochondrial precursor
(Non-hepatic arginase) (Kidney-type arginase) isoform 3
[Canis familiaris].
Length = 182
Score = 198 bits (503), Expect = 1e-50
Identities = 93/151 (61%), Positives = 121/151 (80%), Gaps = 1/151 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKI 670
H DINTPLTT++GNLHGQPVSFLL+EL++K+
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKV 175
>ref|XP_544555.2| PREDICTED: similar to Agmatinase, mitochondrial precursor (Agmatine
ureohydrolase) (AUH) [Canis familiaris].
Length = 352
Score = 70.9 bits (172), Expect = 3e-12
Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 5/275 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKN 409
+G P G R G GP +R+ +L + + L AD+ + + N
Sbjct: 76 VGVPLDIGTSNRPGARFGPRRIREESVLLRTANPSTGALPFQSLMVADLGD-----VNVN 130
Query: 410 PRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDI 589
++ + + + + +I G L LGGDH++ + A+ H + ++ VDAHTD
Sbjct: 131 LYNLQDSCRLIREAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTD- 189
Query: 590 NTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRD----VDPA 757
HG P + E GL L + +V +G+R +DP
Sbjct: 190 TADKALGEKVYHGTPFRRCVDE---------GL------LDCERVVQVGIRGSATTLDPY 234
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
+ ++ G + + + +M + + G+ P+++SFD+DGLDP + P TG
Sbjct: 235 RYS--RSQGFRVVLAEDCWMKSLVPLMADVRRQMGGK---PLYISFDIDGLDPAYAPGTG 289
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
TP GL+ +G+ I ++ G D++EV+P
Sbjct: 290 TPEIAGLTPSQGLEIIRGCQGLNVV-GCDLVEVSP 323
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,388,160
Number of extensions: 1410650
Number of successful extensions: 3611
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3601
Number of HSP's successfully gapped: 8
Length of query: 426
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 320
Effective length of database: 15,340,888
Effective search space: 4909084160
Effective search space used: 4909084160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000036.2| arginase-1 [Homo sapiens]. 525 e-157
Alignment gi|NP_001163.1| arginase-2, mitochondrial precursor [Homo sapie... 379 e-105
Alignment gi|NP_079034.3| agmatinase, mitochondrial precursor [Homo sapie... 72 1e-12
>ref|NP_000036.2| arginase-1 [Homo sapiens].
Length = 322
Score = 525 bits (1351), Expect(2) = e-157
Identities = 257/289 (88%), Positives = 273/289 (94%)
Frame = +2
Query: 203 MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN 382
MS KS++IGIIGAPFSKGQPRGGVEEGPT LRKAGLLEKLKEQECDVKDYGDL FAD+PN
Sbjct: 1 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPN 60
Query: 383 DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV 562
D+PFQIVKNPRSVGKA++QLA VAE+KKNGR SLVLGGDHS+AIGSISGHARVHPDL V
Sbjct: 61 DSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGV 120
Query: 563 IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR 742
IWVDAHTDINTPLTTT+GNLHGQPVSFLLKELK KIP+VPG SWVTPC+SAKDIVYIGLR
Sbjct: 121 IWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLR 180
Query: 743 DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF 922
DVDP EHYILKTLGIKYFSM EVD+LGIGKVMEE SYLLGRKKRPIHLSFDVDGLDP F
Sbjct: 181 DVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSF 240
Query: 923 TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKKV 1069
TPATGTPV GGL+YREG+YITEEIYKTGLLSGLDIMEVNPSLGKT ++V
Sbjct: 241 TPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEV 289
Score = 49.7 bits (117), Expect(2) = e-157
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +1
Query: 1048 GEDTEESTRTVNTAVALVLACXWSAREGNHSLLITLNHPK 1167
G+ EE TRTVNTAVA+ LAC AREGNH + LN PK
Sbjct: 283 GKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK 322
>ref|NP_001163.1| arginase-2, mitochondrial precursor [Homo sapiens].
Length = 354
Score = 379 bits (973), Expect = e-105
Identities = 175/283 (61%), Positives = 227/283 (80%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ +G + + LGGDHS+AIG+ISGHAR PDLCV+WVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCPDLCVVWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+P++PG SW+ PC+S+ IVYIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREG+YI EEI+ TGLLS LD++EVNP L ++++
Sbjct: 265 TPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEE 307
>ref|NP_079034.3| agmatinase, mitochondrial precursor [Homo sapiens].
Length = 352
Score = 72.0 bits (175), Expect = 1e-12
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 5/275 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKN 409
IG P G R G GP +R+ ++ + L AD+ + + N
Sbjct: 76 IGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGD-----VNVN 130
Query: 410 PRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDI 589
++ + +++ + +I G L LGGDH++ + A+ H + ++ VDAHTD
Sbjct: 131 LYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTD- 189
Query: 590 NTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRD----VDPA 757
T HG P + E GL L K +V IG+R +DP
Sbjct: 190 TTDKALGEKLYHGAPFRRCVDE---------GL------LDCKRVVQIGIRGSSTTLDPY 234
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
+ ++ G + + + +M E + G+ PI++SFD+D LDP + P TG
Sbjct: 235 RYN--RSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGK---PIYISFDIDALDPAYAPGTG 289
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
TP GL+ + + I ++ G D++EV+P
Sbjct: 290 TPEIAGLTPSQALEIIRGCQGLNVM-GCDLVEVSP 323
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,587,589
Number of extensions: 1401681
Number of successful extensions: 3614
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3612
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,835,944
Effective search space: 4762338024
Effective search space used: 4762338024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031508.1| arginase-1 [Mus musculus]. 510 e-150
Alignment gi|NP_033835.1| arginase-2, mitochondrial precursor [Mus muscul... 378 e-105
Alignment gi|NP_001074877.1| agmatinase, mitochondrial precursor [Mus mus... 57 3e-08
>ref|NP_031508.1| arginase-1 [Mus musculus].
Length = 323
Score = 510 bits (1313), Expect(2) = e-150
Identities = 247/289 (85%), Positives = 269/289 (93%)
Frame = +2
Query: 203 MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN 382
MS K +S+ IIGAPFSKGQPRGGVE+GP ALRKAGLLEKLKE E DV+D+GDL F DVPN
Sbjct: 1 MSSKPKSLEIIGAPFSKGQPRGGVEKGPAALRKAGLLEKLKETEYDVRDHGDLAFVDVPN 60
Query: 383 DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV 562
D+ FQIVKNPRSVGKAN++LA VVAE++KNGR S+VLGGDHS+A+GSISGHARVHPDLCV
Sbjct: 61 DSSFQIVKNPRSVGKANEELAGVVAEVQKNGRVSVVLGGDHSLAVGSISGHARVHPDLCV 120
Query: 563 IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR 742
IWVDAHTDINTPLTT++GNLHGQPVSFLLKELK K P+VPG SWVTPC+SAKDIVYIGLR
Sbjct: 121 IWVDAHTDINTPLTTSSGNLHGQPVSFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLR 180
Query: 743 DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF 922
DVDP EHYI+KTLGIKYFSM EVDKLGIGKVMEE FSYLLGRKKRPIHLSFDVDGLDP F
Sbjct: 181 DVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPAF 240
Query: 923 TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKKV 1069
TPATGTPV GGLSYREG+YITEEIYKTGLLSGLDIMEVNP+LGKT ++V
Sbjct: 241 TPATGTPVLGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTAEEV 289
Score = 40.0 bits (92), Expect(2) = e-150
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +1
Query: 1048 GEDTEESTRTVNTAVALVLACXWSAREGNH 1137
G+ EE TVNTAVAL LAC + REGNH
Sbjct: 283 GKTAEEVKSTVNTAVALTLACFGTQREGNH 312
>ref|NP_033835.1| arginase-2, mitochondrial precursor [Mus musculus].
Length = 354
Score = 378 bits (970), Expect = e-105
Identities = 175/283 (61%), Positives = 227/283 (80%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ I+GAPFS+GQ + GVE GP A+R+AGLL++L C +KD+GDL F +VP D P+
Sbjct: 25 SVAIVGAPFSRGQKKLGVEYGPAAIREAGLLKRLSRLGCHLKDFGDLSFTNVPQDDPYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
+V PRSVG ANQ+LA+VV+ G + + +GGDHS+AIG+I GHAR PDLCVIWVDA
Sbjct: 85 LVVYPRSVGLANQELAEVVSRAVSGGYSCVTMGGDHSLAIGTIIGHARHRPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT +GN+HGQP+SFL+KEL++K+P++PG SW+ PCLS +IVYIGLRDV+P
Sbjct: 145 HADINTPLTTVSGNIHGQPLSFLIKELQDKVPQLPGFSWIKPCLSPPNIVYIGLRDVEPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM E+D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMREIDRLGIQKVMEQTFDRLIGKRQRPIHLSFDIDAFDPKLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREG+YITEEI+ TGLLS LD++EVNP L ++++
Sbjct: 265 TPVVGGLTYREGVYITEEIHNTGLLSALDLVEVNPHLATSEEE 307
>ref|NP_001074877.1| agmatinase, mitochondrial precursor [Mus musculus].
Length = 358
Score = 57.0 bits (136), Expect = 3e-08
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 5/275 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQIVKN 409
IG P G R G GP +R+ L+ + L AD+ N + N
Sbjct: 82 IGVPLDTGTSNRPGARFGPCRIREESLMLGAVNPSTGALPFQSLRVADLGN-----VNVN 136
Query: 410 PRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDI 589
++ + + + + G L LGGD ++ + A+ H + ++ V AHT+
Sbjct: 137 LYNLQDSCLLIREAYQNVLAAGCIPLTLGGDQTITYPILQAVAKEHGPVGLVHVGAHTN- 195
Query: 590 NTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRD----VDPA 757
TT + V + + + E GL L +K +V IG+R +DP
Sbjct: 196 ------TTDKPREEKV-YHRTPFRRSVDE--GL------LDSKRVVQIGIRGSSRTLDPY 240
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
+ ++ G + + + +M E + G+ P+++SF +D LDP + P TG
Sbjct: 241 RYS--RSQGFRVVLAEDCWMKSLVPLMAEVRQQMGGK---PLYISFAIDALDPAYAPGTG 295
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
TP GL+ + + I ++ G D++EV+P
Sbjct: 296 TPEIAGLTPSQALEIIRGCQGLNVV-GCDLVEVSP 329
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,908,260
Number of extensions: 1184634
Number of successful extensions: 3119
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3111
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 322
Effective length of database: 12,493,815
Effective search space: 4023008430
Effective search space used: 4023008430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999213.1| arginase-1 [Sus scrofa]. 580 e-174
Alignment gi|XP_001928714.1| PREDICTED: arginase-2, mitochondrial [Sus sc... 380 e-106
Alignment gi|XP_003127670.1| PREDICTED: agmatinase, mitochondrial-like [S... 65 6e-11
>ref|NP_999213.1| arginase-1 [Sus scrofa].
Length = 322
Score = 580 bits (1496), Expect(2) = e-174
Identities = 286/289 (98%), Positives = 288/289 (99%)
Frame = +2
Query: 203 MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN 382
MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN
Sbjct: 1 MSFKSQSIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPN 60
Query: 383 DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV 562
DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV
Sbjct: 61 DTPFQIVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCV 120
Query: 563 IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR 742
IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR
Sbjct: 121 IWVDAHTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR 180
Query: 743 DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF 922
DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF
Sbjct: 181 DVDPAEHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFF 240
Query: 923 TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKKV 1069
TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKT ++V
Sbjct: 241 TPATGTPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTPEEV 289
Score = 49.7 bits (117), Expect(2) = e-174
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = +1
Query: 1048 GEDTEESTRTVNTAVALVLACXWSAREGNHSLLITLNHPK 1167
G+ EE TRTVNTAVALVLAC AREGNH + L PK
Sbjct: 283 GKTPEEVTRTVNTAVALVLACFGVAREGNHKPIDYLKPPK 322
>ref|XP_001928714.1| PREDICTED: arginase-2, mitochondrial [Sus scrofa].
Length = 354
Score = 380 bits (976), Expect = e-106
Identities = 176/283 (62%), Positives = 229/283 (80%), Gaps = 1/283 (0%)
Frame = +2
Query: 221 SIGIIGAPFSKGQPRGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVPNDTPFQ- 397
S+ +IGAPFS+GQ R GVE GP A+R+AGL+++L + C +KD+GDL F VP D +
Sbjct: 25 SVAVIGAPFSRGQKRKGVEYGPAAVREAGLMKRLSDLGCHLKDFGDLSFTPVPKDDLYNN 84
Query: 398 IVKNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDA 577
++ NPRSVG ANQ+LA+VV+ G + + +GGDHS+AIG+ISGHAR PDLCVIWVDA
Sbjct: 85 LIVNPRSVGLANQELAEVVSRAVSGGYSCVTVGGDHSLAIGTISGHARHCPDLCVIWVDA 144
Query: 578 HTDINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLRDVDPA 757
H DINTPLTT++GNLHGQPVSFLL+EL++K+P++PG SW+ PC+S+ IVYIGLRDVDP
Sbjct: 145 HADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSPSIVYIGLRDVDPP 204
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
EH+ILK I+YFSM ++D+LGI KVME+ F L+G+++RPIHLSFD+D DP PATG
Sbjct: 205 EHFILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATG 264
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNPSLGKTQKK 1066
TPV GGL+YREG+YITEEI+ TGLLS LD++EVNP L ++++
Sbjct: 265 TPVVGGLTYREGMYITEEIHNTGLLSALDLVEVNPRLAASEEE 307
>ref|XP_003127670.1| PREDICTED: agmatinase, mitochondrial-like [Sus scrofa].
Length = 361
Score = 65.5 bits (158), Expect = 6e-11
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 5/275 (1%)
Frame = +2
Query: 233 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVP--NDTPFQIV 403
IG P G R G GP +R+ +L + + L AD+ N + +
Sbjct: 85 IGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQ 144
Query: 404 KNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHT 583
+ R + +A Q++ G L LGGDH++ + + H + ++ VDAH
Sbjct: 145 DSCRLIREAYQKIVAA-------GCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHM 197
Query: 584 DINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR--DVDPA 757
D HG P ++E GL L K +V IG+R +
Sbjct: 198 D-TADKALGEKLYHGSPFRRCVEE---------GL------LDCKRVVQIGIRGSSLTLD 241
Query: 758 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 937
+ ++ G + + + +M E + G+ PI++SFD+D LDP + P TG
Sbjct: 242 TYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDIDSLDPAYAPGTG 298
Query: 938 TPVHGGLSYREGIYITEEIYKTGLLSGLDIMEVNP 1042
TP GL+ + + I ++ G D++EV+P
Sbjct: 299 TPEIAGLTPSQALEIIRGCQGLNVV-GCDLVEVSP 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,250,543
Number of extensions: 874627
Number of successful extensions: 2278
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2276
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 324
Effective length of database: 8,804,438
Effective search space: 2852637912
Effective search space used: 2852637912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007492
(1279 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 355 4e-95
>Sscrofa_Chr01
|| Length = 315321322
Score = 355 bits (179), Expect = 4e-95
Identities = 195/203 (96%)
Strand = Plus / Minus
Query: 57 gtggagccactcttcctcattagaataaagtcaacagattgaactcaattataaataggn 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35594678 gtggagccactcttcctcattagaataaagtcaacagattgaactcaattataaatagga 35594619
Query: 117 nnnnnnntgtgcccttggccactgagtgttgctgagagggaagactggctggaggactct 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35594618 aaaaaaatgtgcccttggccactgagtgttgctgagagggaagactggctggaggactct 35594559
Query: 177 ggtgtagcggtgagaaatattggagcatgagtttcaagtcacaatccatcgggatcatcg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35594558 ggtgtagcggtgagaaatattggagcatgagtttcaagtcacaatccatcgggatcatcg 35594499
Query: 237 gagctcctttctccaagggtcag 259
|||||||||||||||||||||||
Sbjct: 35594498 gagctcctttctccaagggtcag 35594476
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 331 agagtgtgatgtgaaagattacggggacctgtgctttgctgatgtccctaatgacactcc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35586687 agagtgtgatgtgaaagattacggggacctgtgctttgctgatgtccctaatgacactcc 35586628
Query: 391 ctttcaaatagtgaagaatccaaggtctgtgggaaaagcaaatcaacagctggctgatgt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35586627 ctttcaaatagtgaagaatccaaggtctgtgggaaaagcaaatcaacagctggctgatgt 35586568
Query: 451 ggtggcagaaatcaagaagaacggaaggaccagccttgtactgggcggagaccacag 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35586567 ggtggcagaaatcaagaagaacggaaggaccagccttgtactgggcggagaccacag 35586511
Score = 335 bits (169), Expect = 4e-89
Identities = 259/279 (92%), Gaps = 8/279 (2%)
Strand = Plus / Plus
Query: 1003 agggctactgtcaggattagatatcatggaagtgaatccatctctggggaagaca-caga 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35464673 agggctactgtcaggattagatatcatggaagtgaatccatctctggggaagacaccaga 35464732
Query: 1062 agaaagtactcggacggtgaacacggcagtagcactggtcttggcttgttnntggag-tg 1120
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 35464733 agaagtaactcggacggtgaacacggcagtagcactggtcttggcttgtt-ttggagttg 35464791
Query: 1121 ctcgggagggtaaccat-agcctattgattaccctgaaccaccctaagt-aatggaaaca 1178
||||||||||||||||| ||||||||||||| |||||| | ||||||| ||||||||||
Sbjct: 35464792 ctcgggagggtaaccataagcctattgatta-cctgaaaccacctaagtaaatggaaaca 35464850
Query: 1179 ttacatngaaatctcacagctgatgacataattagcaaaatct-acagtttagttaaact 1237
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 35464851 ttacatgaaaatctcacagctgatgacataattagc-aaatctaacagtttagttaaact 35464909
Query: 1238 tacagttatcttccccgatggactttcagaaaaatgttt 1276
||||||||||||||| |||||||||||||||||||||
Sbjct: 35464910 tacagttatcttcccgattggactttcagaaaaatgttt 35464948
Score = 335 bits (169), Expect = 4e-89
Identities = 259/279 (92%), Gaps = 8/279 (2%)
Strand = Plus / Minus
Query: 1003 agggctactgtcaggattagatatcatggaagtgaatccatctctggggaagaca-caga 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35581591 agggctactgtcaggattagatatcatggaagtgaatccatctctggggaagacaccaga 35581532
Query: 1062 agaaagtactcggacggtgaacacggcagtagcactggtcttggcttgttnntggag-tg 1120
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 35581531 agaagtaactcggacggtgaacacggcagtagcactggtcttggcttgtt-ttggagttg 35581473
Query: 1121 ctcgggagggtaaccat-agcctattgattaccctgaaccaccctaagt-aatggaaaca 1178
||||||||||||||||| ||||||||||||| |||||| | ||||||| ||||||||||
Sbjct: 35581472 ctcgggagggtaaccataagcctattgatta-cctgaaaccacctaagtaaatggaaaca 35581414
Query: 1179 ttacatngaaatctcacagctgatgacataattagcaaaatct-acagtttagttaaact 1237
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 35581413 ttacatgaaaatctcacagctgatgacataattagc-aaatctaacagtttagttaaact 35581355
Query: 1238 tacagttatcttccccgatggactttcagaaaaatgttt 1276
||||||||||||||| |||||||||||||||||||||
Sbjct: 35581354 tacagttatcttcccgattggactttcagaaaaatgttt 35581316
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 506 agtatggcgattggcagcatctctggccatgccagggtccacccagatctctgtgtcatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35584555 agtatggcgattggcagcatctctggccatgccagggtccacccagatctctgtgtcatt 35584496
Query: 566 tgggtggatgctcacaccgacatcaacactccactgacaaccacgaccgggaacttacat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35584495 tgggtggatgctcacaccgacatcaacactccactgacaaccacgaccgggaacttacat 35584436
Query: 626 ggacagcctgtgtcttttctcctgaaggaactaaaggaaaag 667
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35584435 ggacagcctgtgtcttttctcctgaaggaactaaaggaaaag 35584394
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 865 aagaaagaaaaggccaattcatttgagctttgatgtggatggactggatccatttttcac 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35464319 aagaaagaaaaggccaattcatttgagctttgatgtggatggactggatccatttttcac 35464378
Query: 925 accggccactggcacaccagtccatggaggtctgtcttatagagaaggtatctacatcac 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35464379 accggccactggcacaccagtccatggaggtctgtcttatagagaaggtatctacatcac 35464438
Query: 985 ggaagaaatttacaaaacagg 1005
|||||||||||||||||||||
Sbjct: 35464439 ggaagaaatttacaaaacagg 35464459
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 865 aagaaagaaaaggccaattcatttgagctttgatgtggatggactggatccatttttcac 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35581945 aagaaagaaaaggccaattcatttgagctttgatgtggatggactggatccatttttcac 35581886
Query: 925 accggccactggcacaccagtccatggaggtctgtcttatagagaaggtatctacatcac 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35581885 accggccactggcacaccagtccatggaggtctgtcttatagagaaggtatctacatcac 35581826
Query: 985 ggaagaaatttacaaaacagg 1005
|||||||||||||||||||||
Sbjct: 35581825 ggaagaaatttacaaaacagg 35581805
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 763 ctatattttgaaaactctgggcattaaatacttttcaatgattgaagtggataagctggg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35463999 ctatattttgaaaactctgggcattaaatacttttcaatgattgaagtggataagctggg 35464058
Query: 823 aattggcaaggtgatggaagaagcattcagctatctactaggaag 867
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35464059 aattggcaaggtgatggaagaagcattcagctatctactaggaag 35464103
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 763 ctatattttgaaaactctgggcattaaatacttttcaatgattgaagtggataagctggg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35582265 ctatattttgaaaactctgggcattaaatacttttcaatgattgaagtggataagctggg 35582206
Query: 823 aattggcaaggtgatggaagaagcattcagctatctactaggaag 867
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35582205 aattggcaaggtgatggaagaagcattcagctatctactaggaag 35582161
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 666 agattcccgaggtcccaggactttcctgggtgactccctgcctatctgccaaagatattg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35463554 agattcccgaggtcccaggactttcctgggtgactccctgcctatctgccaaagatattg 35463613
Query: 726 tgtatattggcctgagagacgtggaccctgcagaaca 762
|||||||||||||||||||||||||||||||||||||
Sbjct: 35463614 tgtatattggcctgagagacgtggaccctgcagaaca 35463650
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 666 agattcccgaggtcccaggactttcctgggtgactccctgcctatctgccaaagatattg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35582710 agattcccgaggtcccaggactttcctgggtgactccctgcctatctgccaaagatattg 35582651
Query: 726 tgtatattggcctgagagacgtggaccctgcagaaca 762
|||||||||||||||||||||||||||||||||||||
Sbjct: 35582650 tgtatattggcctgagagacgtggaccctgcagaaca 35582614
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 256 tcagccacgaggaggggtggaagaaggccctacagcattgagaaaggctggtctgcttga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35590458 tcagccacgaggaggggtggaagaaggccctacagcattgagaaaggctggtctgcttga 35590399
Query: 316 gaaacttaaagaacaag 332
|||||||||||||||||
Sbjct: 35590398 gaaacttaaagaacaag 35590382
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1 gaagctttctgacccgagacatcctgctagactgctgagcaacatgacataaacctgt 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35603463 gaagctttctgacccgagacatcctgctagactgctgagcaacatgacataaacctgt 35603406
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,260,755
Number of extensions: 423
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 14
Length of query: 1279
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1258
Effective length of database: 2,808,413,156
Effective search space: 3532983750248
Effective search space used: 3532983750248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)