Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091564.1| exostosin-1 [Bos taurus]. 916 0.0
Alignment gi|NP_001093807.1| exostosin-like 1 [Bos taurus]. 416 e-116
Alignment gi|NP_803462.2| exostosin-2 [Bos taurus]. 296 4e-80
Alignment gi|NP_001075942.1| exostosin-like 3 [Bos taurus]. 179 5e-45
Alignment gi|NP_001069692.1| exostosin-like 2 [Bos taurus]. 97 3e-20
>ref|NP_001091564.1| exostosin-1 [Bos taurus].
Length = 746
Score = 916 bits (2368), Expect = 0.0
Identities = 447/463 (96%), Positives = 449/463 (96%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 720
DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL
Sbjct: 464 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 523
Query: 721 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 900
PAKHRWPAT+VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLDEDTVLSTTEVDFAFTVWQ
Sbjct: 524 PAKHRWPATSVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQ 583
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASLK
Sbjct: 584 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLPASLK 643
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS
Sbjct: 644 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 703
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
CMNTFASWFG MPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 704 CMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|NP_001093807.1| exostosin-like 1 [Bos taurus].
Length = 675
Score = 416 bits (1069), Expect = e-116
Identities = 219/437 (50%), Positives = 291/437 (66%)
Frame = +1
Query: 76 DSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPF 255
D RC++D+ + + R L NATFCL+P GR + FL+ALQA C+PV+LS WELPF
Sbjct: 248 DGRCEQDHGPKQTHP-RATLPNATFCLIP-GRNPDALHFLQALQAGCIPVLLSPRWELPF 305
Query: 256 SEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLE 435
SEVI+W +AAV+ DERL LQ+ + ++ + ++LALRQQ QFLW+AYFSSVEK++ TTLE
Sbjct: 306 SEVIDWTKAAVVADERLPLQVLAALQEMPLTRVLALRQQAQFLWDAYFSSVEKVIHTTLE 365
Query: 436 IIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVT 615
IIQDR+ + SL+WN PG L L +S+ DFP+Y+ G +P +F+A+I
Sbjct: 366 IIQDRVSGASAHPSLLWNSPPGALLALSTFSTSPSDFPFYHLQQGSRPLGRFSALIW--- 422
Query: 616 PLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSS 795
+ + QP LKL+ A A +Q+CAQI+VLW+ KP P RWP TAVP+ V++G K S
Sbjct: 423 -VGALGQPPLKLIQAVAGAQHCAQILVLWSSKKPPPP--RWPETAVPLTVLDGHRKA-SD 478
Query: 796 RFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY 975
RFLPY I TDA+LSLD + LST+EVDFAF VWQSFPER+VG+ SHFWD ++ WGY
Sbjct: 479 RFLPYSAISTDAILSLDAHSSLSTSEVDFAFMVWQSFPERMVGFLTWSHFWDETQGGWGY 538
Query: 976 TSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLP 1155
T + N++SMVLT AA P +L+ + D+ C ++LMNFLV+AVTKLP
Sbjct: 539 TGERANEFSMVLTSAAFYHRYYHTLFTHSLPKALRTLADESPPCVEVLMNFLVAAVTKLP 598
Query: 1156 PIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVL 1335
PIKV ++E + R A Q C+N A+ FG MPL+ S++RLDPVL
Sbjct: 599 PIKVPYGPWHQEAKPPLVPGSPRLRSEPRPA-AQDCINQMAAGFGHMPLVSSRLRLDPVL 657
Query: 1336 FKDQVSILRKKYRDIER 1386
FKD VS+LRKKYR +E+
Sbjct: 658 FKDPVSVLRKKYRSLEK 674
>ref|NP_803462.2| exostosin-2 [Bos taurus].
Length = 718
Score = 296 bits (757), Expect = 4e-80
Identities = 170/463 (36%), Positives = 260/463 (56%), Gaps = 4/463 (0%)
Frame = +1
Query: 13 NGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRF 192
+GE V++L C + + RC + + +DY ++L ATFC+V RG RLG
Sbjct: 276 HGEAVLVLDKCSNLSEGVPAARRRCHQQ----QAFDYPQVLQEATFCMVLRGARLGQAVL 331
Query: 193 LEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ 372
+ L+A CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI + +I +++Q
Sbjct: 332 SDVLRAGCVPVIIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQIEEMQRQ 391
Query: 373 TQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPY 552
++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S P
Sbjct: 392 ARWFWEAYFQSIKAIALATLQIINDRIYPYAAISYEDWNDPPA-----VKWGSVSN--PL 444
Query: 553 YYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNC-DKPLP 723
+ L L PP FTA++ + S + +++ +K ++++V+WN +K P
Sbjct: 445 F---LPLIPPQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSKLLVVWNNQNKNPP 497
Query: 724 AKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTVWQ 900
WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + VW+
Sbjct: 498 EDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWR 557
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P +K
Sbjct: 558 EFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIK 617
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
N VD NCEDI MNFLV+ VT IKVT +K++K S D H +R
Sbjct: 618 NWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVERSE 675
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 676 CINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 718
>ref|NP_001075942.1| exostosin-like 3 [Bos taurus].
Length = 919
Score = 179 bits (455), Expect = 5e-45
Identities = 92/226 (40%), Positives = 137/226 (60%), Gaps = 1/226 (0%)
Frame = +1
Query: 676 YCAQIIVLWNCDKPLPAKHR-WPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDED 852
Y +++V+WN K LP++ WP VP++V+ E +++RFLP++ I T+A+LS+D+D
Sbjct: 688 YLNKVVVVWNSPK-LPSEDLVWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDD 746
Query: 853 TVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXX 1032
L E+ F F VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA
Sbjct: 747 AHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFH 806
Query: 1033 XXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTS 1212
P ++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G
Sbjct: 807 KYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQ 864
Query: 1213 RASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
S D HF +R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 865 ALSH--DDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 908
Score = 79.0 bits (193), Expect = 1e-14
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Frame = +1
Query: 109 EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQAACVPVMLSNGWELPFSEVI 267
E+ D E+L +TF L+ P RL + R EAL+ VPV+L +LP+ +V+
Sbjct: 417 EREDRLELLKLSTFALIITPGDPRLLVSSGCATRLFEALEVGAVPVVLGEHVQLPYQDVL 476
Query: 268 NWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQD 447
W++AA++ + + ++ +RS+ +LA+R+Q +FLWE YFS+ + I T L +I+
Sbjct: 477 QWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTTDSIFSTVLAVIRT 536
Query: 448 RI 453
RI
Sbjct: 537 RI 538
>ref|NP_001069692.1| exostosin-like 2 [Bos taurus].
Length = 330
Score = 97.4 bits (241), Expect = 3e-20
Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 17/245 (6%)
Frame = +1
Query: 640 VLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA---VPVIVIEGESKVMSSRFLPY 810
+L+LL Y ++IV+WN + W + VPV + M +R +
Sbjct: 79 LLRLLNHYQAVPYLHKVIVIWNNVGEKGPEELWNSLGPHPVPVNFKAQTTNRMRNRLQVF 138
Query: 811 DNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY----- 975
+ T AVL +D+D ++S ++ FAF+VWQ FP++IVG+ R H S + Y
Sbjct: 139 PELETKAVLMVDDDLLISAQDLVFAFSVWQQFPDQIVGFVPRKHV-STSSGIYSYGGFEL 197
Query: 976 -TSKWTN--DYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVT 1146
T + N YS+VL GA+ PA++ ++D+ NC+DI MNF+++ T
Sbjct: 198 QTPGFGNGDHYSLVLIGASF-FHSKYLELFERQPAAVHALLDETQNCDDIAMNFIIAKHT 256
Query: 1147 K------LPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIH 1308
+ P+ + + KET G + W +HF QR C+N + + SMPL +
Sbjct: 257 GKTSGVFVKPVNIANLE--KETTGGY---SGMWHRAEHFLQRSYCINKLVNIYDSMPLKY 311
Query: 1309 SQMRL 1323
S + +
Sbjct: 312 SNIMI 316
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,577,510
Number of extensions: 1725752
Number of successful extensions: 6015
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5993
Number of HSP's successfully gapped: 6
Length of query: 525
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 418
Effective length of database: 14,140,958
Effective search space: 5910920444
Effective search space used: 5910920444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539145.2| PREDICTED: similar to Exostosin-1 (Glucuronosyl... 917 0.0
Alignment gi|XP_861097.1| PREDICTED: similar to Exostosin-1 (Glucuronosyl... 843 0.0
Alignment gi|XP_544489.1| PREDICTED: similar to Exostosin-like 1 (Glucuro... 427 e-119
Alignment gi|XP_533196.2| PREDICTED: similar to Exostosin-2 (Glucuronosyl... 300 2e-81
Alignment gi|XP_862247.1| PREDICTED: similar to Exostosin-2 (Glucuronosyl... 261 2e-69
Alignment gi|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like... 179 5e-45
Alignment gi|XP_537051.1| PREDICTED: similar to Exostosin-like 2 (Glucuro... 103 6e-22
>ref|XP_539145.2| PREDICTED: similar to Exostosin-1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT1) (Multiple exostoses protein 1)
isoform 1 [Canis familiaris].
Length = 746
Score = 917 bits (2371), Expect = 0.0
Identities = 448/463 (96%), Positives = 449/463 (96%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 720
DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL
Sbjct: 464 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 523
Query: 721 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 900
PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNI+TDAVLSLDEDTVLSTTEVDFAFTVWQ
Sbjct: 524 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQ 583
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASLK
Sbjct: 584 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLPASLK 643
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS
Sbjct: 644 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 703
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
CMNTFASWFG MPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 704 CMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|XP_861097.1| PREDICTED: similar to Exostosin-1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT1) (Multiple exostoses protein 1)
isoform 2 [Canis familiaris].
Length = 746
Score = 843 bits (2179), Expect = 0.0
Identities = 419/464 (90%), Positives = 421/464 (90%), Gaps = 1/464 (0%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCA-QIIVLWNCDKP 717
DFPYYYANLG KPP F + H S P K C QIIVLWNCDKP
Sbjct: 464 DFPYYYANLGKKPPPLFL-LCHPCGDPPGLSVPASKKQTWCHLMTPCPFQIIVLWNCDKP 522
Query: 718 LPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVW 897
LPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNI+TDAVLSLDEDTVLSTTEVDFAFTVW
Sbjct: 523 LPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW 582
Query: 898 QSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASL 1077
QSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASL
Sbjct: 583 QSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLPASL 642
Query: 1078 KNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQ 1257
KNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQ
Sbjct: 643 KNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQ 702
Query: 1258 SCMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
SCMNTFASWFG MPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 703 SCMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|XP_544489.1| PREDICTED: similar to Exostosin-like 1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L)
(Multiple exostosis-like protein) [Canis familiaris].
Length = 672
Score = 427 bits (1099), Expect = e-119
Identities = 224/437 (51%), Positives = 291/437 (66%)
Frame = +1
Query: 76 DSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPF 255
D RC++ N E+ L NATFC++P G R + FL+ALQA C+PV+LS WELPF
Sbjct: 249 DGRCEQ-NRGPEQTPLGATLPNATFCVIP-GHRPEALHFLQALQAGCIPVLLSPRWELPF 306
Query: 256 SEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLE 435
SEVI+W +AA++ D+RL Q+ + ++ + ++LALRQQTQFLW+AYFSSVEK++ TTLE
Sbjct: 307 SEVIDWTKAAIVADKRLPFQVLAALQEMPPTRVLALRQQTQFLWDAYFSSVEKVIHTTLE 366
Query: 436 IIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVT 615
IIQDRIF + SL+WN PG L LP +S+ DFP+Y+ G +P +F+A+I
Sbjct: 367 IIQDRIFGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQRGSRPVGRFSALIWVGA 426
Query: 616 PLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSS 795
P QP LKL+ A A SQ+CAQI+VLW+ +KPLP RWP T VP+ V+ G+ KV S
Sbjct: 427 P----GQPPLKLIQAVAGSQHCAQILVLWSSEKPLPP--RWPKTTVPLTVLAGQRKV-SD 479
Query: 796 RFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY 975
RF P+ I TDA+LSLD + L+T+EVDFAF VWQSFPER+VG+ SHFWD ++ WGY
Sbjct: 480 RFFPHRAISTDAILSLDAHSSLTTSEVDFAFAVWQSFPERMVGFLTWSHFWDEAQGGWGY 539
Query: 976 TSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLP 1155
T++ TN++SMVLT AA P L+ + D+ C D+LMNFLV+AVTKLP
Sbjct: 540 TAERTNEFSMVLTSAAFYHRYYHTLFTHSLPKFLRTLADEAPTCVDVLMNFLVAAVTKLP 599
Query: 1156 PIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVL 1335
PIKV KQ+ E AS P H C+N A FG MPL+ S +RLDPVL
Sbjct: 600 PIKVPYGKQHPEARPPLAPGASEQQPPAH-----DCINHMAEEFGYMPLVSSCLRLDPVL 654
Query: 1336 FKDQVSILRKKYRDIER 1386
FKD VS+LRKKYR +E+
Sbjct: 655 FKDPVSVLRKKYRSLEK 671
>ref|XP_533196.2| PREDICTED: similar to Exostosin-2
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT2) (Multiple exostoses protein 2)
isoform 2 [Canis familiaris].
Length = 718
Score = 300 bits (769), Expect = 2e-81
Identities = 172/463 (37%), Positives = 261/463 (56%), Gaps = 4/463 (0%)
Frame = +1
Query: 13 NGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRF 192
+GE V++L C + + RC E++ YDY ++L ATFC+V RG RLG
Sbjct: 276 HGESVLVLDKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVL 331
Query: 193 LEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ 372
+ L+A CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q
Sbjct: 332 SDVLRAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQ 391
Query: 373 TQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPY 552
++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S P
Sbjct: 392 ARWFWEAYFQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PL 444
Query: 553 YYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLP 723
+ L L PP FTA++ + + + +++ +K ++++V+W N +K P
Sbjct: 445 F---LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPP 497
Query: 724 AKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTVWQ 900
WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + VW+
Sbjct: 498 EDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWR 557
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P +K
Sbjct: 558 EFPDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIK 617
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
N VD NCEDI MNFLV+ VT IKVT +K++K S D H +R
Sbjct: 618 NWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVERSE 675
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 676 CINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 718
>ref|XP_862247.1| PREDICTED: similar to Exostosin-2
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT2) (Multiple exostoses protein 2)
isoform 3 [Canis familiaris].
Length = 646
Score = 261 bits (666), Expect = 2e-69
Identities = 145/389 (37%), Positives = 224/389 (57%), Gaps = 4/389 (1%)
Frame = +1
Query: 13 NGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRF 192
+GE V++L C + + RC E++ YDY ++L ATFC+V RG RLG
Sbjct: 276 HGESVLVLDKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVL 331
Query: 193 LEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ 372
+ L+A CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q
Sbjct: 332 SDVLRAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQ 391
Query: 373 TQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPY 552
++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S P
Sbjct: 392 ARWFWEAYFQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PL 444
Query: 553 YYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLP 723
+ L L PP FTA++ + + + +++ +K ++++V+W N +K P
Sbjct: 445 F---LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPP 497
Query: 724 AKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTVWQ 900
WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + VW+
Sbjct: 498 EDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWR 557
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P +K
Sbjct: 558 EFPDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIK 617
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKV 1167
N VD NCEDI MNFLV+ VT IKV
Sbjct: 618 NWVDAHMNCEDIAMNFLVANVTGKAVIKV 646
>ref|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like 3 [Canis familiaris].
Length = 919
Score = 179 bits (455), Expect = 5e-45
Identities = 90/225 (40%), Positives = 133/225 (59%)
Frame = +1
Query: 676 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDT 855
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D+D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 856 VLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXX 1035
L E+ F F VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1036 XXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSR 1215
P ++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G
Sbjct: 808 YYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQA 865
Query: 1216 ASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
S D HF +R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 866 LSH--DDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 908
Score = 76.6 bits (187), Expect = 6e-14
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Frame = +1
Query: 109 EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQAACVPVMLSNGWELPFSEVI 267
E+ D E+L +TF L+ P L + R EAL+ VPV+L +LP+ +++
Sbjct: 417 EREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDML 476
Query: 268 NWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQD 447
WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE YFS+ + I T L +I+
Sbjct: 477 QWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRT 536
Query: 448 RI 453
RI
Sbjct: 537 RI 538
>ref|XP_537051.1| PREDICTED: similar to Exostosin-like 2
(Glucuronyl-galactosyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase)
(Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
(Alpha-GalNAcT EXTL2) (EXT-related protein 2) [Canis
familiaris].
Length = 330
Score = 103 bits (256), Expect = 6e-22
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 17/245 (6%)
Frame = +1
Query: 640 VLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA---VPVIVIEGESKVMSSRFLPY 810
+L+LL Y ++IV+WN W + VPVI + M +R +
Sbjct: 79 LLRLLNHYQAVPYLHKVIVVWNNVGEKGPDELWNSLGPHPVPVIFKLQTTNRMRNRLQVF 138
Query: 811 DNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY----- 975
+ T+AVL +D+DT++S ++ FAF+VWQ FP++IVG+ R H S + Y
Sbjct: 139 PELETNAVLMVDDDTLISAQDLVFAFSVWQQFPDQIVGFVPRKHV-STSSGIYSYGGFEL 197
Query: 976 -TSKWTN--DYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVT 1146
T + N YSMVL GA+ PA++ ++D++ NC+DI MNF+++ T
Sbjct: 198 QTPGFGNGDQYSMVLIGASF-FNSKYLDLFQRQPAAVHALIDEIQNCDDIAMNFIIAKHT 256
Query: 1147 KLPPIKVTQKKQYKETMMGQTSRASR------WADPDHFAQRQSCMNTFASWFGSMPLIH 1308
T K MG + S W +HF QR C+N + + SMPL +
Sbjct: 257 -----GKTSGVFVKPVNMGNLEKESNGGYPGMWHRAEHFLQRSYCINKLVNIYNSMPLKY 311
Query: 1309 SQMRL 1323
S + +
Sbjct: 312 SNIMI 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,137,317
Number of extensions: 1746298
Number of successful extensions: 5894
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5876
Number of HSP's successfully gapped: 8
Length of query: 525
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 418
Effective length of database: 15,307,552
Effective search space: 6398556736
Effective search space used: 6398556736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000118.2| exostosin-1 [Homo sapiens]. 917 0.0
Alignment gi|NP_004446.2| exostosin-like 1 [Homo sapiens]. 428 e-120
Alignment gi|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens]. 300 2e-81
Alignment gi|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens]. 300 2e-81
Alignment gi|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens]. 266 3e-71
Alignment gi|NP_001431.1| exostosin-like 3 [Homo sapiens]. 179 5e-45
Alignment gi|NP_001028197.1| exostosin-like 2 [Homo sapiens]. 100 3e-21
Alignment gi|NP_001430.1| exostosin-like 2 [Homo sapiens]. 100 3e-21
>ref|NP_000118.2| exostosin-1 [Homo sapiens].
Length = 746
Score = 917 bits (2370), Expect = 0.0
Identities = 447/463 (96%), Positives = 449/463 (96%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 720
DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL
Sbjct: 464 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 523
Query: 721 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 900
PAKHRWPATAVPV+VIEGESKVMSSRFLPYDNI+TDAVLSLDEDTVLSTTEVDFAFTVWQ
Sbjct: 524 PAKHRWPATAVPVVVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQ 583
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASLK
Sbjct: 584 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLK 643
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS
Sbjct: 644 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 703
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
CMNTFASWFG MPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 704 CMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|NP_004446.2| exostosin-like 1 [Homo sapiens].
Length = 676
Score = 428 bits (1101), Expect = e-120
Identities = 224/437 (51%), Positives = 293/437 (67%)
Frame = +1
Query: 76 DSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPF 255
D RC++D + +E L NATFCL+ R + RFL+ALQA C+PV+LS WELPF
Sbjct: 249 DGRCEQDPGPGQT-QRQETLPNATFCLISGHRPEAASRFLQALQAGCIPVLLSPRWELPF 307
Query: 256 SEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLE 435
SEVI+W +AA++ DERL LQ+ + ++ + ++LALRQQTQFLW+AYFSSVEK++ TTLE
Sbjct: 308 SEVIDWTKAAIVADERLPLQVLAALQEMSPARVLALRQQTQFLWDAYFSSVEKVIHTTLE 367
Query: 436 IIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVT 615
+IQDRIF + SL+WN PG L L +S+ DFP+YY G +P +F+A+I
Sbjct: 368 VIQDRIFGTSAHPSLLWNSPPGALLALSTFSTSPQDFPFYYLQQGSRPEGRFSALIWVGP 427
Query: 616 PLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSS 795
P QP LKL+ A A SQ+CAQI+VLW+ ++PLP+ RWP TAVP+ VI+G KV S
Sbjct: 428 P----GQPPLKLIQAVAGSQHCAQILVLWSNERPLPS--RWPETAVPLTVIDGHRKV-SD 480
Query: 796 RFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY 975
RF PY I TDA+LSLD + LST+EVDFAF VWQSFPER+VG+ SHFWD + WGY
Sbjct: 481 RFYPYSTIRTDAILSLDARSSLSTSEVDFAFLVWQSFPERMVGFLTSSHFWDEAHGGWGY 540
Query: 976 TSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLP 1155
T++ TN++SMVLT AA P +L+ + D+ C D+LMNF+V+AVTKLP
Sbjct: 541 TAERTNEFSMVLTTAAFYHRYYHTLFTHSLPKALRTLADEAPTCVDVLMNFIVAAVTKLP 600
Query: 1156 PIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVL 1335
PIKV KQ +E + P A C+N A+ FG MPL+ S++RLDPVL
Sbjct: 601 PIKVPYGKQRQEA--APLAPGGPGPRPKPPAPAPDCINQIAAAFGHMPLLSSRLRLDPVL 658
Query: 1336 FKDQVSILRKKYRDIER 1386
FKD VS+ RKKYR +E+
Sbjct: 659 FKDPVSVQRKKYRSLEK 675
>ref|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens].
Length = 718
Score = 300 bits (769), Expect = 2e-81
Identities = 173/465 (37%), Positives = 262/465 (56%), Gaps = 4/465 (0%)
Frame = +1
Query: 7 VHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSF 186
V +GE V++L C + + RC + ++ +DY ++L ATFC+V RG RLG
Sbjct: 274 VKHGESVLVLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQA 329
Query: 187 RFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALR 366
+ LQA CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I ++
Sbjct: 330 VLSDVLQAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQ 389
Query: 367 QQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDF 546
+Q ++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S
Sbjct: 390 RQARWFWEAYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPA-----VKWGSVSN-- 442
Query: 547 PYYYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNC-DKP 717
P + L L PP FTA++ + S + +++ +K ++++V+WN +K
Sbjct: 443 PLF---LPLIPPQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSKLLVVWNNQNKN 495
Query: 718 LPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTV 894
P WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + V
Sbjct: 496 PPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEV 555
Query: 895 WQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPAS 1074
W+ FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P
Sbjct: 556 WREFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGD 615
Query: 1075 LKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQR 1254
+KN VD NCEDI MNFLV+ VT IKVT +K++K S D H +R
Sbjct: 616 IKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVER 673
Query: 1255 QSCMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 674 SECINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 718
>ref|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens].
Length = 751
Score = 300 bits (769), Expect = 2e-81
Identities = 173/465 (37%), Positives = 262/465 (56%), Gaps = 4/465 (0%)
Frame = +1
Query: 7 VHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSF 186
V +GE V++L C + + RC + ++ +DY ++L ATFC+V RG RLG
Sbjct: 307 VKHGESVLVLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQA 362
Query: 187 RFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALR 366
+ LQA CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I ++
Sbjct: 363 VLSDVLQAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQ 422
Query: 367 QQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDF 546
+Q ++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S
Sbjct: 423 RQARWFWEAYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPA-----VKWGSVSN-- 475
Query: 547 PYYYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNC-DKP 717
P + L L PP FTA++ + S + +++ +K ++++V+WN +K
Sbjct: 476 PLF---LPLIPPQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSKLLVVWNNQNKN 528
Query: 718 LPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTV 894
P WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + V
Sbjct: 529 PPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEV 588
Query: 895 WQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPAS 1074
W+ FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P
Sbjct: 589 WREFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGD 648
Query: 1075 LKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQR 1254
+KN VD NCEDI MNFLV+ VT IKVT +K++K S D H +R
Sbjct: 649 IKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVER 706
Query: 1255 QSCMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 707 SECINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 751
>ref|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens].
Length = 728
Score = 266 bits (681), Expect = 3e-71
Identities = 166/476 (34%), Positives = 255/476 (53%), Gaps = 15/476 (3%)
Frame = +1
Query: 7 VHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSF 186
V +GE V++L C + + RC + ++ +DY ++L ATFC+V RG RLG
Sbjct: 274 VKHGESVLVLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQA 329
Query: 187 RFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALR 366
+ LQA CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I ++
Sbjct: 330 VLSDVLQAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQ 389
Query: 367 QQTQFL-------WEAYFSSVEKIVLTT----LEIIQDRIFKHISRNSLIWNKHPGGLFV 513
+Q F+ W A + ++ +II DRI+ + + + WN P
Sbjct: 390 RQL-FMEPARRENWSAANHQMNSLIWPREQWDSQIINDRIYPYAAISYEEWNDPPA---- 444
Query: 514 LPQYSSYLGDFPYYYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQ 687
++ S P + L L PP FTA++ + S + +++ +K ++
Sbjct: 445 -VKWGSVSN--PLF---LPLIPPQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSK 494
Query: 688 IIVLWNC-DKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLS 864
++V+WN +K P WP VP+ V+ +S+RF PYD I T+AVL++D+D ++
Sbjct: 495 LLVVWNNQNKNPPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIML 554
Query: 865 TT-EVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXX 1041
T+ E+ F + VW+ FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA
Sbjct: 555 TSDELQFGYEVWREFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYF 614
Query: 1042 XXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRAS 1221
P +KN VD NCEDI MNFLV+ VT IKVT +K++K S
Sbjct: 615 NYLYTYKMPGDIKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS 674
Query: 1222 RWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
D H +R C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 675 --LDQTHMVERSECINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 728
>ref|NP_001431.1| exostosin-like 3 [Homo sapiens].
Length = 919
Score = 179 bits (455), Expect = 5e-45
Identities = 90/225 (40%), Positives = 133/225 (59%)
Frame = +1
Query: 676 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDT 855
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D+D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 856 VLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXX 1035
L E+ F F VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1036 XXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSR 1215
P ++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G
Sbjct: 808 YYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQA 865
Query: 1216 ASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
S D HF +R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 866 LSH--DDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 908
Score = 78.6 bits (192), Expect = 2e-14
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Frame = +1
Query: 109 EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQAACVPVMLSNGWELPFSEVI 267
E+ D E+L +TF L+ P RL + R EAL+ VPV+L +LP+ +++
Sbjct: 417 EREDRLELLKLSTFALIITPGDPRLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDML 476
Query: 268 NWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQD 447
WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE YFS+ + I T L +I+
Sbjct: 477 QWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRT 536
Query: 448 RI 453
RI
Sbjct: 537 RI 538
>ref|NP_001028197.1| exostosin-like 2 [Homo sapiens].
Length = 330
Score = 100 bits (250), Expect = 3e-21
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%)
Frame = +1
Query: 640 VLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA---VPVIVIEGESKVMSSRFLPY 810
+LKLL ++IV+WN W + +PVI + + M +R +
Sbjct: 79 LLKLLNHYQAVPNLHKVIVVWNNIGEKAPDELWNSLGPHPIPVIFKQQTANRMRNRLQVF 138
Query: 811 DNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSH-------FWDNSKERW 969
+ T+AVL +D+DT++ST ++ FAF+VWQ FP++IVG+ R H + S E
Sbjct: 139 PELETNAVLMVDDDTLISTPDLVFAFSVWQQFPDQIVGFVPRKHVSTSSGIYSYGSFEMQ 198
Query: 970 GYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSA-VT 1146
S + YSMVL GA+ PA++ ++D NC+DI MNF+++ +
Sbjct: 199 APGSGNGDQYSMVLIGASF-FNSKYLELFQRQPAAVHALIDDTQNCDDIAMNFIIAKHIG 257
Query: 1147 KLPPI---KVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQM 1317
K I V KET G + W +H QR C+N + + SMPL +S +
Sbjct: 258 KTSGIFVKPVNMDNLEKETNSGY---SGMWHRAEHALQRSYCINKLVNIYDSMPLRYSNI 314
Query: 1318 RL 1323
+
Sbjct: 315 MI 316
>ref|NP_001430.1| exostosin-like 2 [Homo sapiens].
Length = 330
Score = 100 bits (250), Expect = 3e-21
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%)
Frame = +1
Query: 640 VLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA---VPVIVIEGESKVMSSRFLPY 810
+LKLL ++IV+WN W + +PVI + + M +R +
Sbjct: 79 LLKLLNHYQAVPNLHKVIVVWNNIGEKAPDELWNSLGPHPIPVIFKQQTANRMRNRLQVF 138
Query: 811 DNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSH-------FWDNSKERW 969
+ T+AVL +D+DT++ST ++ FAF+VWQ FP++IVG+ R H + S E
Sbjct: 139 PELETNAVLMVDDDTLISTPDLVFAFSVWQQFPDQIVGFVPRKHVSTSSGIYSYGSFEMQ 198
Query: 970 GYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSA-VT 1146
S + YSMVL GA+ PA++ ++D NC+DI MNF+++ +
Sbjct: 199 APGSGNGDQYSMVLIGASF-FNSKYLELFQRQPAAVHALIDDTQNCDDIAMNFIIAKHIG 257
Query: 1147 KLPPI---KVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQM 1317
K I V KET G + W +H QR C+N + + SMPL +S +
Sbjct: 258 KTSGIFVKPVNMDNLEKETNSGY---SGMWHRAEHALQRSYCINKLVNIYDSMPLRYSNI 314
Query: 1318 RL 1323
+
Sbjct: 315 MI 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,054,603
Number of extensions: 1728028
Number of successful extensions: 5853
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5826
Number of HSP's successfully gapped: 9
Length of query: 525
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 418
Effective length of database: 14,770,016
Effective search space: 6173866688
Effective search space used: 6173866688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034292.2| exostosin-1 [Mus musculus]. 916 0.0
Alignment gi|NP_062524.2| exostosin-like 1 [Mus musculus]. 424 e-119
Alignment gi|NP_034293.2| exostosin-2 [Mus musculus]. 296 3e-80
Alignment gi|NP_061258.2| exostosin-like 3 [Mus musculus]. 179 4e-45
Alignment gi|NP_001156987.1| exostosin-like 2 isoform b [Mus musculus]. 102 1e-21
Alignment gi|NP_001156986.1| exostosin-like 2 isoform a [Mus musculus]. 102 1e-21
Alignment gi|NP_067363.3| exostosin-like 2 isoform a [Mus musculus]. 102 1e-21
>ref|NP_034292.2| exostosin-1 [Mus musculus].
Length = 746
Score = 916 bits (2368), Expect = 0.0
Identities = 447/463 (96%), Positives = 449/463 (96%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDV+LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVLLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 720
DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL
Sbjct: 464 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 523
Query: 721 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 900
PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNI+TDAVLSLDEDTVLSTTEVDFAFTVWQ
Sbjct: 524 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQ 583
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASLK
Sbjct: 584 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLK 643
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS
Sbjct: 644 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 703
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
CMNTFASWFG MPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 704 CMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|NP_062524.2| exostosin-like 1 [Mus musculus].
Length = 669
Score = 424 bits (1091), Expect = e-119
Identities = 224/442 (50%), Positives = 294/442 (66%)
Frame = +1
Query: 61 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 240
W +H C++D + Y E L NATFCL+P G R + FL+ALQA C+PV+LS
Sbjct: 242 WDRH----CEQDPGPQQTYP-GETLPNATFCLIP-GHRSATSCFLQALQAGCIPVLLSPR 295
Query: 241 WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 420
WELPFSEVI+W +AA+I DERL LQ+ + +R + ++LALRQQTQFLW AYFSSVEK++
Sbjct: 296 WELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQTQFLWTAYFSSVEKVI 355
Query: 421 LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 600
TTLEIIQDRI+ SL+WN PG L LP +S+ L DFP+Y+ LG P S F+AV
Sbjct: 356 HTTLEIIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPFYHLQLGSGPGSSFSAV 415
Query: 601 IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 780
I + + + +LKL+ A S++CAQI++LWN +K P RWP TAVP+ VI+G
Sbjct: 416 IW----VGASGESLLKLIQEVAGSRHCAQILILWNSEKLPP--DRWPETAVPLTVIKGHR 469
Query: 781 KVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSK 960
KV S+RF PY NI T+ +LSLD + LST+EVDFAF VWQSFPER+VG+ + SHFWD ++
Sbjct: 470 KV-SNRFFPYSNISTNVILSLDAQSTLSTSEVDFAFVVWQSFPERMVGFLSGSHFWDEAQ 528
Query: 961 ERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSA 1140
WGY + TN++SMVLT AA P +L+ + D+ C D+LMNFLV+
Sbjct: 529 GGWGYRTGMTNEFSMVLTTAAFYHRYYHTLFTHSLPKALRTIADETPTCVDVLMNFLVAT 588
Query: 1141 VTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMR 1320
VTKLPPIKV +Q+ E + + +P Q C+N A+ FG MPL+ SQ+R
Sbjct: 589 VTKLPPIKVPYGRQHPEAVPMDSGDPRPVPEPQPL--DQDCINRLAAGFGHMPLVSSQVR 646
Query: 1321 LDPVLFKDQVSILRKKYRDIER 1386
LDPVLFKD VS+ RKKYR +E+
Sbjct: 647 LDPVLFKDPVSVQRKKYRSLEK 668
>ref|NP_034293.2| exostosin-2 [Mus musculus].
Length = 718
Score = 296 bits (758), Expect = 3e-80
Identities = 168/460 (36%), Positives = 257/460 (55%), Gaps = 3/460 (0%)
Frame = +1
Query: 19 EDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLE 198
E V++L C + + RC +++ +DY ++L ATFC V RG RLG +
Sbjct: 278 ESVLVLDKCTNLSEGVLSVRKRCH----QHQVFDYPQVLQEATFCTVLRGARLGQAVLSD 333
Query: 199 ALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQ 378
LQA CVPV++++ + LPFSEV++W +A+V+ E + + S +++I Q +I +++Q +
Sbjct: 334 VLQAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQNIPQRQIEEMQRQAR 393
Query: 379 FLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYY 558
+ WEAYF S++ I L TL+II DRI+ + + + WN P + +L P
Sbjct: 394 WFWEAYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWASVSNPLFLPLIP--- 450
Query: 559 ANLGLKPPSK-FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNC-DKPLPAKH 732
P S+ FTA++ + S + +++ +K ++++V+WN +K P +
Sbjct: 451 ------PQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSKLLVVWNNQNKNPPEES 500
Query: 733 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTVWQSFP 909
WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + VW+ FP
Sbjct: 501 LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFP 560
Query: 910 ERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMV 1089
+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P +KN V
Sbjct: 561 DRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWV 620
Query: 1090 DQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMN 1269
D NCEDI MNFLV+ VT IKVT +K++K S D H +R C+N
Sbjct: 621 DTHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVERSECIN 678
Query: 1270 TFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 679 KFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 718
>ref|NP_061258.2| exostosin-like 3 [Mus musculus].
Length = 919
Score = 179 bits (455), Expect = 4e-45
Identities = 90/225 (40%), Positives = 133/225 (59%)
Frame = +1
Query: 676 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDT 855
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D+D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 856 VLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXX 1035
L E+ F F VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1036 XXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSR 1215
P ++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G
Sbjct: 808 YYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQA 865
Query: 1216 ASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
S D HF +R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 866 LSH--DDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 908
Score = 76.3 bits (186), Expect = 6e-14
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Frame = +1
Query: 109 EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQAACVPVMLSNGWELPFSEVI 267
E+ D E+L +TF L+ P L + R EAL+ VPV+L +LP+ +++
Sbjct: 417 EREDRLELLKLSTFALIITPGDPHLLISSGCATRLFEALEVGAVPVVLGEQVQLPYHDML 476
Query: 268 NWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQD 447
WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE YFS+ + I T L +I+
Sbjct: 477 QWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRT 536
Query: 448 RI 453
RI
Sbjct: 537 RI 538
>ref|NP_001156987.1| exostosin-like 2 isoform b [Mus musculus].
Length = 316
Score = 102 bits (253), Expect = 1e-21
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Frame = +1
Query: 571 LKPPSK-----FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHR 735
+K PSK FT ++ +++ +L+LL ++IV+WN +
Sbjct: 42 IKSPSKSALDSFTLIMQTY----NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEEL 97
Query: 736 WPATA---VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSF 906
W + +PVI + M +R + + T+AVL +D+DT++S ++ FAF++WQ F
Sbjct: 98 WNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQF 157
Query: 907 PERIVGYPARSHFWDNSK-ERWGYTSKWT------NDYSMVLTGAAIXXXXXXXXXXXXX 1065
P++I+G+ R H +S +G T + YSMVL GA+
Sbjct: 158 PDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASF-FNSKYLELFQKQ 216
Query: 1066 PASLKNMVDQLANCEDILMNFLVSAVTKLP------PIKVTQKKQYKETMMGQTSRASRW 1227
PA++ ++D+ NC+DI MNFLV+ T P PI + + KET + W
Sbjct: 217 PAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLE--KET----NGYSGMW 270
Query: 1228 ADPDHFAQRQSCMNTFASWFGSMPLIHSQMRL 1323
+HF QR C+N + + MPL +S + +
Sbjct: 271 HRAEHFLQRSYCINKLVNIYDGMPLKYSNIMI 302
>ref|NP_001156986.1| exostosin-like 2 isoform a [Mus musculus].
Length = 330
Score = 102 bits (253), Expect = 1e-21
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Frame = +1
Query: 571 LKPPSK-----FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHR 735
+K PSK FT ++ +++ +L+LL ++IV+WN +
Sbjct: 56 IKSPSKSALDSFTLIMQTY----NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEEL 111
Query: 736 WPATA---VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSF 906
W + +PVI + M +R + + T+AVL +D+DT++S ++ FAF++WQ F
Sbjct: 112 WNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQF 171
Query: 907 PERIVGYPARSHFWDNSK-ERWGYTSKWT------NDYSMVLTGAAIXXXXXXXXXXXXX 1065
P++I+G+ R H +S +G T + YSMVL GA+
Sbjct: 172 PDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASF-FNSKYLELFQKQ 230
Query: 1066 PASLKNMVDQLANCEDILMNFLVSAVTKLP------PIKVTQKKQYKETMMGQTSRASRW 1227
PA++ ++D+ NC+DI MNFLV+ T P PI + + KET + W
Sbjct: 231 PAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLE--KET----NGYSGMW 284
Query: 1228 ADPDHFAQRQSCMNTFASWFGSMPLIHSQMRL 1323
+HF QR C+N + + MPL +S + +
Sbjct: 285 HRAEHFLQRSYCINKLVNIYDGMPLKYSNIMI 316
>ref|NP_067363.3| exostosin-like 2 isoform a [Mus musculus].
Length = 330
Score = 102 bits (253), Expect = 1e-21
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Frame = +1
Query: 571 LKPPSK-----FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHR 735
+K PSK FT ++ +++ +L+LL ++IV+WN +
Sbjct: 56 IKSPSKSALDSFTLIMQTY----NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEEL 111
Query: 736 WPATA---VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSF 906
W + +PVI + M +R + + T+AVL +D+DT++S ++ FAF++WQ F
Sbjct: 112 WNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQF 171
Query: 907 PERIVGYPARSHFWDNSK-ERWGYTSKWT------NDYSMVLTGAAIXXXXXXXXXXXXX 1065
P++I+G+ R H +S +G T + YSMVL GA+
Sbjct: 172 PDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASF-FNSKYLELFQKQ 230
Query: 1066 PASLKNMVDQLANCEDILMNFLVSAVTKLP------PIKVTQKKQYKETMMGQTSRASRW 1227
PA++ ++D+ NC+DI MNFLV+ T P PI + + KET + W
Sbjct: 231 PAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLE--KET----NGYSGMW 284
Query: 1228 ADPDHFAQRQSCMNTFASWFGSMPLIHSQMRL 1323
+HF QR C+N + + MPL +S + +
Sbjct: 285 HRAEHFLQRSYCINKLVNIYDGMPLKYSNIMI 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,407,888
Number of extensions: 1455613
Number of successful extensions: 4876
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4857
Number of HSP's successfully gapped: 8
Length of query: 525
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 419
Effective length of database: 12,433,743
Effective search space: 5209738317
Effective search space used: 5209738317
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa]. 920 0.0
Alignment gi|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa]. 410 e-115
Alignment gi|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa]. 295 5e-80
Alignment gi|XP_003359092.1| PREDICTED: exostosin-like 3-like [Sus scrofa]. 125 9e-29
Alignment gi|XP_001928932.2| PREDICTED: hypothetical protein LOC100152703... 125 9e-29
Alignment gi|NP_001230478.1| exostosin-like 2 [Sus scrofa]. 97 2e-20
Alignment gi|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa]. 76 6e-14
>ref|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa].
Length = 746
Score = 920 bits (2378), Expect = 0.0
Identities = 450/463 (97%), Positives = 450/463 (97%)
Frame = +1
Query: 1 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 180
YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG
Sbjct: 284 YHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLG 343
Query: 181 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 360
SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA
Sbjct: 344 SFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILA 403
Query: 361 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 540
LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG
Sbjct: 404 LRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLG 463
Query: 541 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 720
DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL
Sbjct: 464 DFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPL 523
Query: 721 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 900
PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ
Sbjct: 524 PAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQ 583
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAI PASLK
Sbjct: 584 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLPASLK 643
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS
Sbjct: 644 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 703
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL
Sbjct: 704 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 746
>ref|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa].
Length = 674
Score = 410 bits (1055), Expect = e-115
Identities = 217/437 (49%), Positives = 288/437 (65%)
Frame = +1
Query: 76 DSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPF 255
D C++D+ + + L NATFCL+P GR + FL+ALQA C+PV+LS WELPF
Sbjct: 247 DGHCEQDHGPKQTHP-GATLPNATFCLIP-GRSSDALHFLQALQAGCIPVLLSPRWELPF 304
Query: 256 SEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLE 435
SEVI+W +AA++ DERL LQ+ + ++ + ++LALRQQTQFLW+AYFS+VEK++ TTLE
Sbjct: 305 SEVIDWTKAAIVADERLSLQVLTALQEMPLTRVLALRQQTQFLWDAYFSTVEKVIHTTLE 364
Query: 436 IIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVT 615
IIQDRI + SL+WN PG L LP +S+ DFP+Y+ G +P KF+A+I
Sbjct: 365 IIQDRISGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQQGSRPLGKFSALIWVEA 424
Query: 616 PLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSS 795
P Q +KL+ A A SQ+CAQI+VLW+ +KP P R P TAVP+ VI+G KV S
Sbjct: 425 P----GQLPVKLIQAMAGSQHCAQILVLWSSEKPPPP--RLPETAVPLTVIDGPRKV-SG 477
Query: 796 RFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGY 975
RF PY I TDA+LSLD + LST+EVDFAF VWQSFPER+VG+ +HFWD ++ WGY
Sbjct: 478 RFFPYSAINTDAILSLDAHSSLSTSEVDFAFVVWQSFPERMVGFLTWNHFWDEARGSWGY 537
Query: 976 TSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLKNMVDQLANCEDILMNFLVSAVTKLP 1155
T++ N++SMVLT AA P +L + D+ C D+LMNFLV+AVTKLP
Sbjct: 538 TAERANEFSMVLTSAAFYHRYYHTLFTHSLPKALWTLADEAPTCVDVLMNFLVAAVTKLP 597
Query: 1156 PIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGSMPLIHSQMRLDPVL 1335
PIKV ++ ET + + Q C+N + FG MPL+ S++RLDPVL
Sbjct: 598 PIKVPHATRHGET-SPPLAPGGPGLRQEQQPATQDCINQMVAGFGHMPLVSSRLRLDPVL 656
Query: 1336 FKDQVSILRKKYRDIER 1386
FKD VS+LRKKYR +E+
Sbjct: 657 FKDPVSMLRKKYRSLEK 673
>ref|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa].
Length = 718
Score = 295 bits (755), Expect = 5e-80
Identities = 169/463 (36%), Positives = 261/463 (56%), Gaps = 4/463 (0%)
Frame = +1
Query: 13 NGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRF 192
+GE V++L C + + RC + ++ +DY ++L ATFC+V RG RLG
Sbjct: 276 HGEAVLVLDKCTNLSEGVPAARKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVL 331
Query: 193 LEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ 372
+ L+A CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI + ++ +++Q
Sbjct: 332 SDVLRAGCVPVVIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQMEEMQRQ 391
Query: 373 TQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPY 552
++ WEAYF S++ I L TL+II DRI+ + + + WN P ++ S P
Sbjct: 392 ARWFWEAYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPS-----VKWGSVSN--PL 444
Query: 553 YYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNC-DKPLP 723
+ L L PP FTA++ + S + +++ +K ++++V+WN +K P
Sbjct: 445 F---LPLIPPQSQGFTAIVLTYDRVES----LFRVITEVSKVPSLSKLLVVWNNQNKNPP 497
Query: 724 AKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTT-EVDFAFTVWQ 900
WP VP+ V+ +S+RF PYD I T+AVL++D+D ++ T+ E+ F + VW+
Sbjct: 498 EDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWR 557
Query: 901 SFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPASLK 1080
FP+R+VGYP R H WD+ +W Y S+WTN+ SMVLTGAA P +K
Sbjct: 558 EFPDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIK 617
Query: 1081 NMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQS 1260
N VD NCEDI MNFLV+ VT IKVT +K++K S D H +R
Sbjct: 618 NWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLS--LDQTHMVERSE 675
Query: 1261 CMNTFASWFGSMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL 1389
C+N FAS FG+MPL + R DPVL+KD K + +I L
Sbjct: 676 CINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL 718
>ref|XP_003359092.1| PREDICTED: exostosin-like 3-like [Sus scrofa].
Length = 192
Score = 125 bits (313), Expect = 9e-29
Identities = 64/153 (41%), Positives = 90/153 (58%)
Frame = +1
Query: 892 VWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPA 1071
VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA P
Sbjct: 33 VWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQ 92
Query: 1072 SLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQ 1251
++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G S D HF +
Sbjct: 93 AIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQALSH--DDSHFHE 148
Query: 1252 RQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 149 RHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 181
>ref|XP_001928932.2| PREDICTED: hypothetical protein LOC100152703 [Sus scrofa].
Length = 432
Score = 125 bits (313), Expect = 9e-29
Identities = 64/153 (41%), Positives = 90/153 (58%)
Frame = +1
Query: 892 VWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIXXXXXXXXXXXXXPA 1071
VW+ +RIVG+P R H WD + W Y S ++ + SMVLTGAA P
Sbjct: 273 VWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQ 332
Query: 1072 SLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQ 1251
++++MVD+ NCEDI MNFLVS +T+ PPIKVT + ++ G S D HF +
Sbjct: 333 AIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFR--CPGCPQALSH--DDSHFHE 388
Query: 1252 RQSCMNTFASWFGSMPLIHSQMRLDPVLFKDQV 1350
R C+N F +G MPL+++Q R+D VLFK ++
Sbjct: 389 RHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRL 421
>ref|NP_001230478.1| exostosin-like 2 [Sus scrofa].
Length = 330
Score = 97.4 bits (241), Expect = 2e-20
Identities = 75/263 (28%), Positives = 121/263 (46%), Gaps = 11/263 (4%)
Frame = +1
Query: 568 GLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPAT 747
G P FT ++ +++ +L+LL ++IV+WN W +
Sbjct: 59 GKSPLDSFTLIMQTY----NRTDLLLRLLNHYQAVPNLHKVIVVWNNVGEKGPDELWNSL 114
Query: 748 A---VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVWQSFPERI 918
VPVI + M +R + + T AVL +D+D ++S ++ FAF+VWQ FP++I
Sbjct: 115 GPHPVPVIFKPQTANRMRNRLQVFPELETSAVLMVDDDMLISAQDLVFAFSVWQQFPDQI 174
Query: 919 VGYPARSHFWDNS-KERWG----YTSKWTN--DYSMVLTGAAIXXXXXXXXXXXXXPASL 1077
VG+ R H S +G +T + N YS+VL GA+ PA++
Sbjct: 175 VGFVPRKHVATASGVYSYGGFELHTPGFGNGDHYSLVLIGASF-FNSKYLDLFQRQPAAV 233
Query: 1078 KNMVDQLANCEDILMNFLVSAVT-KLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQR 1254
++D+ NC+DI MNFL++ T K + V Y + W +HF QR
Sbjct: 234 HALLDETQNCDDIAMNFLIAKHTGKTSGVFVKPVNMYNLEKETNGGYSGMWHRAEHFLQR 293
Query: 1255 QSCMNTFASWFGSMPLIHSQMRL 1323
C+N + SMPL +S + +
Sbjct: 294 SYCINKLVHIYDSMPLRYSNIMI 316
>ref|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa].
Length = 826
Score = 75.9 bits (185), Expect = 6e-14
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Frame = +1
Query: 109 EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQAACVPVMLSNGWELPFSEVI 267
E+ D E+L +TF L+ P L + R EAL+ VPV+L +LP+ +++
Sbjct: 417 EREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDML 476
Query: 268 NWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQD 447
W++AA++ + + ++ +RS+ +LA+R+Q +FLWE YFS+ + I T L +I+
Sbjct: 477 QWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFSTVLAVIRT 536
Query: 448 RI 453
RI
Sbjct: 537 RI 538
Score = 60.1 bits (144), Expect = 3e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +1
Query: 676 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDT 855
Y Q++V+WN + WP VP++V+ E +++RFLP++ I T+A+LS+D+D
Sbjct: 688 YLTQVVVVWNFSQLPSDDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 856 VLSTTEVDFAF 888
L E+ F F
Sbjct: 748 HLRHDEIMFGF 758
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,603,836
Number of extensions: 1152204
Number of successful extensions: 3802
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3789
Number of HSP's successfully gapped: 8
Length of query: 525
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 421
Effective length of database: 8,754,644
Effective search space: 3685705124
Effective search space used: 3685705124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007498
(1577 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 571 e-160
Sscrofa_Chr06 462 e-127
>Sscrofa_Chr04
|| Length = 143465943
Score = 571 bits (288), Expect = e-160
Identities = 311/316 (98%), Gaps = 2/316 (0%)
Strand = Plus / Plus
Query: 1204 cagacctctcgggcttcccgctgggccgaccccgaccactttgcccagcgacagagctgc 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22127558 cagacctctcgggcttcccgctgggccgaccccgaccactttgcccagcgacagagctgc 22127617
Query: 1264 atgaatacgtttgccagctggtttggctccatgccgctgatccactctcagatgaggctc 1323
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 22127618 atgaatacgtttgccagctggtttggctccatgccgctgatccactctcaaatgaggctc 22127677
Query: 1324 gaccccgtcctctttaaagaccaggtctctatcctgcggaagaaataccgagacatcgag 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22127678 gaccccgtcctctttaaagaccaggtctctatcctgcggaagaaataccgagacatcgag 22127737
Query: 1384 cgactttgaggagccaggccgagtgccaagtgggggaagggacgcgagaaaagagacagg 1443
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 22127738 cgactttgaggagccaggccgagtgccaagtgggggaggggacgcgagagaagagacagg 22127797
Query: 1444 gttggccgctctctcttcccagtgcaggtctgctcagcaaggggagccagattgtgcc-a 1502
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 22127798 gttggccgctctctcttcccagtgcaggtctgctcagc-aggggagccagattgtgccaa 22127856
Query: 1503 gcatccaaataaactc 1518
||||||||||||||||
Sbjct: 22127857 gcatccaaataaactc 22127872
Score = 341 bits (172), Expect = 7e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 1035 atattatcactacctttatacccattacctgccagccagcctaaagaacatggtggacca 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22124061 atattatcactacctttatacccattacctgccagccagcctaaagaacatggtggacca 22124120
Query: 1095 attggccaactgcgaggacatactcatgaatttcctggtgtctgctgtgacaaaattgcc 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22124121 attggccaactgcgaggacatactcatgaatttcctggtgtctgctgtgacaaaattgcc 22124180
Query: 1155 tccgatcaaagtgacccagaagaagcagtataaggagacaatgatgggacag 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22124181 tccgatcaaagtgacccagaagaagcagtataaggagacaatgatgggacag 22124232
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 872 aggtggattttgccttcactgtgtggcagagtttccccgagaggattgtggggtaccccg 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22121209 aggtggattttgccttcactgtgtggcagagtttccccgagaggattgtggggtaccccg 22121268
Query: 932 cgcgcagccacttctgggataactctaaagagcggtgggggtacacctccaagtggacaa 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22121269 cgcgcagccacttctgggataactctaaagagcggtgggggtacacctccaagtggacaa 22121328
Query: 992 atgactactccatggtgttgacaggagctgctatttaccacaa 1034
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22121329 atgactactccatggtgttgacaggagctgctatttaccacaa 22121371
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 434 agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106017 agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 22106076
Query: 494 atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106077 atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 22106136
Query: 554 actatgctaatttaggt 570
|||||||||||||||||
Sbjct: 22106137 actatgctaatttaggt 22106153
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 308 tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097099 tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 22097158
Query: 368 agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097159 agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 22097218
Query: 428 cactagag 435
||||||||
Sbjct: 22097219 cactagag 22097226
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 567 aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108799 aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 22108858
Query: 627 tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108859 tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 22108918
Query: 687 a 687
|
Sbjct: 22108919 a 22108919
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 tatcacgtccataacggggaggacgtcgtgcttcttaccacctgcaagcatggcaaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839281 tatcacgtccataacggggaggacgtcgtgcttcttaccacctgcaagcatggcaaagac 21839340
Query: 61 tggcaaaagcacaaggattctcgctgtgaccgagacaacaccgagtatgagaagta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839341 tggcaaaagcacaaggattctcgctgtgaccgagacaacaccgagtatgagaagta 21839396
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 205 caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091439 caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 22091498
Query: 265 attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 315
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091499 attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 22091549
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 688 atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22110041 atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 22110100
Query: 748 gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 785
||||||||||||||||||||||||||||||||||||||
Sbjct: 22110101 gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 22110138
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 782 aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22115015 aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 22115074
Query: 842 tcgatgaggacaccgtgctttccaccacagaggt 875
||||||||||||||||||||||||||||||||||
Sbjct: 22115075 tcgatgaggacaccgtgctttccaccacagaggt 22115108
Score = 180 bits (91), Expect = 2e-42
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 114 gtatgattatcgggaaatgctgcacaacgccactttctgtctggttcctcgtggtcgcag 173
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 22089758 gtatgattatcgggaaatgctgcacaatgccactttctgtctggttcctcgtggtcgcag 22089817
Query: 174 gcttgggtccttcaggttcctggaggctctgcagg 208
|||||||||||||||||||||||||||||||||||
Sbjct: 22089818 gcttgggtccttcaggttcctggaggctctgcagg 22089852
>Sscrofa_Chr06
|| Length = 157765593
Score = 462 bits (233), Expect = e-127
Identities = 624/751 (83%), Gaps = 30/751 (3%)
Strand = Plus / Minus
Query: 644 tgaaactcctcgtggctgcagccaagtcccagtactgtgcccaaatcatagttctatgga 703
||||||||||| ||| ||||||||| ||| ||||||||||||| || ||||||||| ||
Sbjct: 25716077 tgaaactcctcctgggtgcagccaaatcctagtactgtgcccagattatagttctacggc 25716018
Query: 704 attgtgacaagcccctcccagccaaacaccgctggcctgccactgccgtgcctgtcatcg 763
|||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 25716017 attgtgacaagcccctcccagccaaacaccactggcctgccac---------------ca 25715973
Query: 764 tcattgaaggagaaagcaaggtcatgagcagccg-ttttctaccgtatgacaa---catc 819
||| |||||||||||||||||| ||||| |||| |||| | || || |||| ||||
Sbjct: 25715972 tcactgaaggagaaagcaaggttatgagtagcctattttgtgccctacgacagtatcatc 25715913
Query: 820 gtcacagacgccgtgctcagcctcgatgaggacaccgtgctttccaccacagaggtggat 879
|||||||| ||||||||| || ||| ||||| ||||||| | |||| ||||||||
Sbjct: 25715912 atcacagacaggaggctcagccttgaagagaacaccatgctttcaatcacacaggtggat 25715853
Query: 880 tttgccttcactgtgtggcagagtttccccgagaggattgtggggtaccccgcgcgcagc 939
| ||||||||| |||| ||||| |||| ||||| || ||||| ||||| | || ||||
Sbjct: 25715852 tctgccttcaccatgtgacagagcttcct-gagagcatcgtgggataccctgtgcacagc 25715794
Query: 940 cacttctgggataactctaaagagcggtgggggtacacctccaagtggacaaatgactac 999
|| |||||||||| |||||| ||| || ||| | |||||||||||| ||||||
Sbjct: 25715793 catttctgggatagctctaaggagaca---ggatacgtattcaagtggacaaacgactac 25715737
Query: 1000 tc----catggtgttgacaggagctgctatttaccacaaatattatcactacctttatac 1055
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25715736 tcactccatggtgttgataggagctgctatttaccacaaatattatcactacctttatac 25715677
Query: 1056 ccattacctgccagccagcctaaagaacatggtggaccaattggccaactgcgaggacat 1115
| | |||||||||||||||||||||||||||| |||||||| |||| |||| | |||||
Sbjct: 25715676 ctagtacctgccagccagcctaaagaacatggcggaccaatgagccagctgcaaagacat 25715617
Query: 1116 actcatgaatttcctggtgtctgctgtgacaaaattgcctccgatcaaagtgacccagaa 1175
||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct: 25715616 actcatgaatttcctggtggctgctgtgacaaaactgcctctgatcaaagtgacccagaa 25715557
Query: 1176 gaagcagtataaggagacaatgatgggacagacctctcgggcttcccgctgggccgaccc 1235
||||||||||||||||| |||||| ||||||| ||| ||||||| | |||||| |||||
Sbjct: 25715556 aaagcagtataaggagacgatgatgcgacagacttcttgggcttctcactgggctgaccc 25715497
Query: 1236 cgaccactttgcccagcgacagagctgcatgaatacgtttgccagctggtttggctccat 1295
||||||| ||||||| ||| |||||||||||||| ||||||||||| | ||||| | |
Sbjct: 25715496 agaccactctgcccagtgacggagctgcatgaatatgtttgccagct-ttctggcttcct 25715438
Query: 1296 gccgctgatccactctcagatgaggctcgaccccgtcctctt--taaagaccaggtctct 1353
| | |||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||
Sbjct: 25715437 gtcactgatccactctcaaatgaggcttcaccccatcctcttcataaagaccaagtctct 25715378
Query: 1354 atcctgcggaagaaataccgagacatcgagc 1384
|| |||| || ||||||| ||||||| ||||
Sbjct: 25715377 attctgcagatgaaatactgagacatagagc 25715347
Score = 85.7 bits (43), Expect = 7e-14
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 523 tattcatcttatctgggagattttccttactactatgctaatttaggtctgaagcccccc 582
||||||||||||||||||| | ||||||||||| |||||||||||||| | |||||||||
Sbjct: 25716217 tattcatcttatctgggagctcttccttactaccatgctaatttaggtttaaagcccccc 25716158
Query: 583 tccaaattcac 593
|| ||| ||||
Sbjct: 25716157 tctaaaatcac 25716147
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,982,955
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 14
Length of query: 1577
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1555
Effective length of database: 2,808,408,574
Effective search space: 4367075332570
Effective search space used: 4367075332570
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)