Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091564.1| exostosin-1 [Bos taurus]. 858 0.0
Alignment gi|NP_001093807.1| exostosin-like 1 [Bos taurus]. 311 9e-85
Alignment gi|NP_803462.2| exostosin-2 [Bos taurus]. 211 1e-54
Alignment gi|NP_001075942.1| exostosin-like 3 [Bos taurus]. 89 1e-17
>ref|NP_001091564.1| exostosin-1 [Bos taurus].
Length = 746
Score = 858 bits (2216), Expect = 0.0
Identities = 425/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
L+SKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPAT+
Sbjct: 474 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATS 533
Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 534 VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592
Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL THYL
Sbjct: 593 PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638
>ref|NP_001093807.1| exostosin-like 1 [Bos taurus].
Length = 675
Score = 311 bits (797), Expect = 9e-85
Identities = 184/430 (42%), Positives = 256/430 (59%), Gaps = 1/430 (0%)
Frame = +2
Query: 107 FDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKG 286
F +GQAM+A+AS + + FRP FDV++PL + HP GG G L+ ++ P + + +
Sbjct: 172 FQLGQAMVAEASPTMDTFRPGFDVALPLLPEAHPLRGGALGQLQQHSPLPGVALIAMAEE 231
Query: 287 KRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREML 466
+ +G++ + C W D RC++D+ + + R L
Sbjct: 232 RGGWRTVGTN----------------FSACP----W----DGRCEQDHGPKQTHP-RATL 266
Query: 467 HNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQ 646
NATFCL+P GR + FL+ALQA C+PV+LS WELPFSEVI+W +AAV+ DERL LQ
Sbjct: 267 PNATFCLIP-GRNPDALHFLQALQAGCIPVLLSPRWELPFSEVIDWTKAAVVADERLPLQ 325
Query: 647 IPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKH 826
+ + ++ + ++LALRQQ QFLW+AYFSSVEK++ TTLEIIQDR+ + SL+WN
Sbjct: 326 VLAALQEMPLTRVLALRQQAQFLWDAYFSSVEKVIHTTLEIIQDRVSGASAHPSLLWNSP 385
Query: 827 PGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQ 1006
PG L L +S+ DFP+Y+ G +P +F+A+I + + QP LKL+ A A +Q
Sbjct: 386 PGALLALSTFSTSPSDFPFYHLQQGSRPLGRFSALIW----VGALGQPPLKLIQAVAGAQ 441
Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
+CAQI+VLW+ KP P RWP TAVP+ V++G K S RFLPY I TDA+LSLD
Sbjct: 442 HCAQILVLWSSKKPPPP--RWPETAVPLTVLDGHRKA-SDRFLPYSAISTDAILSLDAHS 498
Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
LST++ V FPER+VG +HF + GY N++SM T A +
Sbjct: 499 SLSTSEVDFAFMVWQSFPERMVGFLTWSHFWDETQGGWGYTGERANEFSMVLTSAAFYHR 558
Query: 1364 YYHYL*THYL 1393
YYH L TH L
Sbjct: 559 YYHTLFTHSL 568
>ref|NP_803462.2| exostosin-2 [Bos taurus].
Length = 718
Score = 211 bits (537), Expect = 1e-54
Identities = 145/469 (30%), Positives = 232/469 (49%), Gaps = 14/469 (2%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
D P G P R+Y L+ D A +GE V++L
Sbjct: 237 SAEVDLPEKG-----------PGPRRYFLLSSQVALHPEYREDL--AALQARHGEAVLVL 283
Query: 368 TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
C + + RC + + +DY ++L ATFC+V RG RLG + L+A C
Sbjct: 284 DKCSNLSEGVPAARRRCHQQ----QAFDYPQVLQEATFCMVLRGARLGQAVLSDVLRAGC 339
Query: 548 VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
VPV++++ + LPFSEV++W +A+V+ E + + S ++SI + +I +++Q ++ WEAY
Sbjct: 340 VPVIIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQIEEMQRQARWFWEAY 399
Query: 728 FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYANL 898
F S++ I L TL+II DRI+ + + + WN P G P + L
Sbjct: 400 FQSIKAIALATLQIINDRIYPYAAISYEDWNDPPAVKWGSVSNPLF-------------L 446
Query: 899 GLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRW 1069
L PP FTA++ + + + +++ +K ++++V+W N +K P W
Sbjct: 447 PLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLW 502
Query: 1070 PATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPE 1240
P VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +FP+
Sbjct: 503 PKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPD 561
Query: 1241 RIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
R+VG P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 562 RLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|NP_001075942.1| exostosin-like 3 [Bos taurus].
Length = 919
Score = 88.6 bits (218), Expect = 1e-17
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 38/261 (14%)
Frame = +2
Query: 116 GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
G+AM+A+++ +RP FD+ + PL E F++ +P RKY+ F+G+
Sbjct: 294 GRAMVAQSTFYAAQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348
Query: 290 RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
+ R++L + E+ + ++ T K +DS+ D+ E
Sbjct: 349 KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397
Query: 437 Y------------------EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQA 541
+ E+ D E+L +TF L+ P RL + R EAL+
Sbjct: 398 FTCKSQPRASLPTEWALCGEREDRLELLKLSTFALIITPGDPRLLVSSGCATRLFEALEV 457
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
VPV+L +LP+ +V+ W++AA++ + + ++ +RS+ +LA+R+Q +FLWE
Sbjct: 458 GAVPVVLGEHVQLPYQDVLQWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517
Query: 722 AYFSSVEKIVLTTLEIIQDRI 784
YFS+ + I T L +I+ RI
Sbjct: 518 TYFSTTDSIFSTVLAVIRTRI 538
Score = 71.6 bits (174), Expect = 2e-12
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Frame = +2
Query: 1007 YCAQIIVLWNCDKPLPAKHR-WPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKD 1183
Y +++V+WN K LP++ WP VP++V+ E +++RFLP++ I T+A+LS+D D
Sbjct: 688 YLNKVVVVWNSPK-LPSEDLVWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDD 746
Query: 1184 PVLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISP 1360
L + + V + +RIVG P R H + Y SN + + SM TG A
Sbjct: 747 AHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFH 806
Query: 1361 KYYHYL 1378
KYY YL
Sbjct: 807 KYYAYL 812
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,779,435
Number of extensions: 1590859
Number of successful extensions: 4179
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 6
Length of query: 464
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,174,046
Effective search space: 5074308468
Effective search space used: 5074308468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539145.2| PREDICTED: similar to Exostosin-1 (Glucuronosyl... 859 0.0
Alignment gi|XP_861097.1| PREDICTED: similar to Exostosin-1 (Glucuronosyl... 785 0.0
Alignment gi|XP_544489.1| PREDICTED: similar to Exostosin-like 1 (Glucuro... 320 3e-87
Alignment gi|XP_862247.1| PREDICTED: similar to Exostosin-2 (Glucuronosyl... 214 2e-55
Alignment gi|XP_533196.2| PREDICTED: similar to Exostosin-2 (Glucuronosyl... 214 2e-55
Alignment gi|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like... 87 5e-17
>ref|XP_539145.2| PREDICTED: similar to Exostosin-1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT1) (Multiple exostoses protein 1)
isoform 1 [Canis familiaris].
Length = 746
Score = 859 bits (2219), Expect = 0.0
Identities = 426/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
L+SKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533
Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 534 VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592
Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL THYL
Sbjct: 593 PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638
>ref|XP_861097.1| PREDICTED: similar to Exostosin-1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT1) (Multiple exostoses protein 1)
isoform 2 [Canis familiaris].
Length = 746
Score = 785 bits (2027), Expect = 0.0
Identities = 397/467 (85%), Positives = 404/467 (86%), Gaps = 3/467 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
L+SKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCA-QIIVLWNCDKPLPAKHRWPAT 1078
KPP F + H S P K C QIIVLWNCDKPLPAKHRWPAT
Sbjct: 474 KKPPPLF-LLCHPCGDPPGLSVPASKKQTWCHLMTPCPFQIIVLWNCDKPLPAKHRWPAT 532
Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG 1252
AVPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 533 AVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVG 591
Query: 1253 *PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL THYL
Sbjct: 592 YPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638
>ref|XP_544489.1| PREDICTED: similar to Exostosin-like 1
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L)
(Multiple exostosis-like protein) [Canis familiaris].
Length = 672
Score = 320 bits (819), Expect = 3e-87
Identities = 192/456 (42%), Positives = 263/456 (57%), Gaps = 2/456 (0%)
Frame = +2
Query: 32 WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
WN G+N P F GQAM+AKAS + + FRP FDV++PL + HP
Sbjct: 153 WNGGKNQLVLSLHPALCPQT-----FPPGQAMVAKASPAVDTFRPGFDVALPLLPEAHPL 207
Query: 212 TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
GG G L+ ++ P + + + + G+D+ C
Sbjct: 208 RGGAPGQLRQHSPHPGVPLLALAEERGGWRVAGADS----------------PACP---- 247
Query: 392 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
W D RC++ N E+ L NATFC++P G R + FL+ALQA C+PV+LS
Sbjct: 248 W----DGRCEQ-NRGPEQTPLGATLPNATFCVIP-GHRPEALHFLQALQAGCIPVLLSPR 301
Query: 572 WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
WELPFSEVI+W +AA++ D+RL Q+ + ++ + ++LALRQQTQFLW+AYFSSVEK++
Sbjct: 302 WELPFSEVIDWTKAAIVADKRLPFQVLAALQEMPPTRVLALRQQTQFLWDAYFSSVEKVI 361
Query: 752 LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
TTLEIIQDRIF + SL+WN PG L LP +S+ DFP+Y+ G +P +F+A+
Sbjct: 362 HTTLEIIQDRIFGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQRGSRPVGRFSAL 421
Query: 932 IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
I P QP LKL+ A A SQ+CAQI+VLW+ +KPLP RWP T VP+ V+ G+
Sbjct: 422 IWVGAP----GQPPLKLIQAVAGSQHCAQILVLWSSEKPLPP--RWPKTTVPLTVLAGQR 475
Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGKTL 1285
KV S RF P+ I TDA+LSLD L+T++ + W FPER+VG +HF
Sbjct: 476 KV-SDRFFPHRAISTDAILSLDAHSSLTTSEVDFAFAVW-QSFPERMVGFLTWSHFWDEA 533
Query: 1286 KRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
+ GY + TN++SM T A +YYH L TH L
Sbjct: 534 QGGWGYTAERTNEFSMVLTSAAFYHRYYHTLFTHSL 569
>ref|XP_862247.1| PREDICTED: similar to Exostosin-2
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT2) (Multiple exostoses protein 2)
isoform 3 [Canis familiaris].
Length = 646
Score = 214 bits (544), Expect = 2e-55
Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 11/466 (2%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
D P G P R+Y L+ D +GE V++L
Sbjct: 237 SAEVDLPEKG-----------PGPRRYFLLSSQMAVHPEYREDLE--AIQAKHGESVLVL 283
Query: 368 TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
C + + RC E++ YDY ++L ATFC+V RG RLG + L+A C
Sbjct: 284 DKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGC 339
Query: 548 VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
VPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q ++ WEAY
Sbjct: 340 VPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWEAY 399
Query: 728 FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLK 907
F S++ I L TL+II DRI+ + + + WN P ++ S P + L L
Sbjct: 400 FQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PLF---LPLI 449
Query: 908 PPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPAT 1078
PP FTA++ + + + +++ +K ++++V+W N +K P WP
Sbjct: 450 PPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKI 505
Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIV 1249
VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +FP+R+V
Sbjct: 506 RVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLV 564
Query: 1250 G*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
G P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 565 GYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|XP_533196.2| PREDICTED: similar to Exostosin-2
(Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
acetylglucosaminyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
suppressor protein EXT2) (Multiple exostoses protein 2)
isoform 2 [Canis familiaris].
Length = 718
Score = 214 bits (544), Expect = 2e-55
Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 11/466 (2%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
D P G P R+Y L+ D +GE V++L
Sbjct: 237 SAEVDLPEKG-----------PGPRRYFLLSSQMAVHPEYREDLE--AIQAKHGESVLVL 283
Query: 368 TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
C + + RC E++ YDY ++L ATFC+V RG RLG + L+A C
Sbjct: 284 DKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGC 339
Query: 548 VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
VPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q ++ WEAY
Sbjct: 340 VPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWEAY 399
Query: 728 FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLK 907
F S++ I L TL+II DRI+ + + + WN P ++ S P + L L
Sbjct: 400 FQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PLF---LPLI 449
Query: 908 PPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPAT 1078
PP FTA++ + + + +++ +K ++++V+W N +K P WP
Sbjct: 450 PPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKI 505
Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIV 1249
VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +FP+R+V
Sbjct: 506 RVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLV 564
Query: 1250 G*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
G P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 565 GYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like 3 [Canis familiaris].
Length = 919
Score = 86.7 bits (213), Expect = 5e-17
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
Frame = +2
Query: 116 GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
G+AM+A+++ +RP FD+ + PL E F++ +P RKY+ F+G+
Sbjct: 294 GRAMVAQSTFYASQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348
Query: 290 RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
+ R++L + E+ + ++ T K +DS+ D+ E
Sbjct: 349 KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397
Query: 437 Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
+ E+ D E+L +TF L+ P L + R EAL+
Sbjct: 398 FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEV 457
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
VPV+L +LP+ +++ WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE
Sbjct: 458 GAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517
Query: 722 AYFSSVEKIVLTTLEIIQDRI 784
YFS+ + I T L +I+ RI
Sbjct: 518 TYFSTADSIFNTVLAMIRTRI 538
Score = 71.6 bits (174), Expect = 2e-12
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
L + + V + +RIVG P R H + Y SN + + SM TG A K
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1364 YYHYL 1378
YY YL
Sbjct: 808 YYAYL 812
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,318,356
Number of extensions: 1629720
Number of successful extensions: 4316
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4299
Number of HSP's successfully gapped: 8
Length of query: 464
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 358
Effective length of database: 15,340,888
Effective search space: 5492037904
Effective search space used: 5492037904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000118.2| exostosin-1 [Homo sapiens]. 857 0.0
Alignment gi|NP_004446.2| exostosin-like 1 [Homo sapiens]. 325 8e-89
Alignment gi|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens]. 216 4e-56
Alignment gi|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens]. 216 4e-56
Alignment gi|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens]. 182 6e-46
Alignment gi|NP_001431.1| exostosin-like 3 [Homo sapiens]. 90 6e-18
>ref|NP_000118.2| exostosin-1 [Homo sapiens].
Length = 746
Score = 857 bits (2214), Expect = 0.0
Identities = 424/466 (90%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
L+SKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533
Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
VPV+VIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 534 VPVVVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592
Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL +HYL
Sbjct: 593 PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYL 638
>ref|NP_004446.2| exostosin-like 1 [Homo sapiens].
Length = 676
Score = 325 bits (832), Expect = 8e-89
Identities = 194/455 (42%), Positives = 260/455 (57%), Gaps = 1/455 (0%)
Frame = +2
Query: 32 WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
WN GRN P F +GQAM+A+AS + ++FRP FDV++P + HP
Sbjct: 153 WNRGRNHLVLRLHPAPCPRT-----FQLGQAMVAEASPTVDSFRPGFDVALPFLPEAHPL 207
Query: 212 TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
GG G L+ ++ P + + + R G
Sbjct: 208 RGGAPGQLRQHSPQPGVALLAL-----------EEERGGWRTADTGSSAC---------P 247
Query: 392 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
W D RC++D + +E L NATFCL+ R + RFL+ALQA C+PV+LS
Sbjct: 248 W----DGRCEQDPGPGQT-QRQETLPNATFCLISGHRPEAASRFLQALQAGCIPVLLSPR 302
Query: 572 WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
WELPFSEVI+W +AA++ DERL LQ+ + ++ + ++LALRQQTQFLW+AYFSSVEK++
Sbjct: 303 WELPFSEVIDWTKAAIVADERLPLQVLAALQEMSPARVLALRQQTQFLWDAYFSSVEKVI 362
Query: 752 LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
TTLE+IQDRIF + SL+WN PG L L +S+ DFP+YY G +P +F+A+
Sbjct: 363 HTTLEVIQDRIFGTSAHPSLLWNSPPGALLALSTFSTSPQDFPFYYLQQGSRPEGRFSAL 422
Query: 932 IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
I P QP LKL+ A A SQ+CAQI+VLW+ ++PLP+ RWP TAVP+ VI+G
Sbjct: 423 IWVGPP----GQPPLKLIQAVAGSQHCAQILVLWSNERPLPS--RWPETAVPLTVIDGHR 476
Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLK 1288
KV S RF PY I TDA+LSLD LST++ V FPER+VG +HF
Sbjct: 477 KV-SDRFYPYSTIRTDAILSLDARSSLSTSEVDFAFLVWQSFPERMVGFLTSSHFWDEAH 535
Query: 1289 RRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
GY + TN++SM T A +YYH L TH L
Sbjct: 536 GGWGYTAERTNEFSMVLTTAAFYHRYYHTLFTHSL 570
>ref|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens].
Length = 718
Score = 216 bits (550), Expect = 4e-56
Identities = 149/471 (31%), Positives = 237/471 (50%), Gaps = 16/471 (3%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
D P G P R+Y L+ G+ + R L V +GE V+
Sbjct: 237 SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 281
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
+L C + + RC + ++ +DY ++L ATFC+V RG RLG + LQA
Sbjct: 282 VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 337
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q ++ WE
Sbjct: 338 GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWE 397
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
AYF S++ I L TL+II DRI+ + + + WN P G P +
Sbjct: 398 AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF------------ 445
Query: 893 NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
L L PP FTA++ + + + +++ +K ++++V+W N +K P
Sbjct: 446 -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 500
Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
WP VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +F
Sbjct: 501 LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 559
Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
P+R+VG P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 560 PDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens].
Length = 751
Score = 216 bits (550), Expect = 4e-56
Identities = 149/471 (31%), Positives = 237/471 (50%), Gaps = 16/471 (3%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 210 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 269
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
D P G P R+Y L+ G+ + R L V +GE V+
Sbjct: 270 SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 314
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
+L C + + RC + ++ +DY ++L ATFC+V RG RLG + LQA
Sbjct: 315 VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 370
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q ++ WE
Sbjct: 371 GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWE 430
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
AYF S++ I L TL+II DRI+ + + + WN P G P +
Sbjct: 431 AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF------------ 478
Query: 893 NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
L L PP FTA++ + + + +++ +K ++++V+W N +K P
Sbjct: 479 -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 533
Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
WP VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +F
Sbjct: 534 LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 592
Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
P+R+VG P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 593 PDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 643
>ref|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens].
Length = 728
Score = 182 bits (462), Expect = 6e-46
Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 26/481 (5%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
D P G P R+Y L+ G+ + R L V +GE V+
Sbjct: 237 SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 281
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
+L C + + RC + ++ +DY ++L ATFC+V RG RLG + LQA
Sbjct: 282 VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 337
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ------ 703
CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI Q +I +++Q
Sbjct: 338 GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQLFMEPA 397
Query: 704 TQFLWEAYFSSVEKIVLT----TLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSS 862
+ W A + ++ +II DRI+ + + + WN P G P +
Sbjct: 398 RRENWSAANHQMNSLIWPREQWDSQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF-- 455
Query: 863 YLGDFPYYYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW- 1033
L L PP FTA++ + + + +++ +K ++++V+W
Sbjct: 456 -----------LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWN 500
Query: 1034 NCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---K 1204
N +K P WP VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ +
Sbjct: 501 NQNKNPPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQ 560
Query: 1205 WICPHWVADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*T 1384
+ W +FP+R+VG P R H + Y S TN+ SM TG A KY++YL T
Sbjct: 561 FGYEVW-REFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYT 619
Query: 1385 H 1387
+
Sbjct: 620 Y 620
>ref|NP_001431.1| exostosin-like 3 [Homo sapiens].
Length = 919
Score = 89.7 bits (221), Expect = 6e-18
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 38/261 (14%)
Frame = +2
Query: 116 GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
G+AM+A+++ T +RP FD+ + PL E F++ +P RKY+ F+G+
Sbjct: 294 GRAMVAQSTFYTVQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348
Query: 290 RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
+ R++L + E+ + ++ T K +DS+ D+ E
Sbjct: 349 KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397
Query: 437 Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
+ E+ D E+L +TF L+ P RL + R EAL+
Sbjct: 398 FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPRLVISSGCATRLFEALEV 457
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
VPV+L +LP+ +++ WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE
Sbjct: 458 GAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517
Query: 722 AYFSSVEKIVLTTLEIIQDRI 784
YFS+ + I T L +I+ RI
Sbjct: 518 TYFSTADSIFNTVLAMIRTRI 538
Score = 71.6 bits (174), Expect = 2e-12
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
L + + V + +RIVG P R H + Y SN + + SM TG A K
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1364 YYHYL 1378
YY YL
Sbjct: 808 YYAYL 812
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,285,249
Number of extensions: 1611036
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4186
Number of HSP's successfully gapped: 8
Length of query: 464
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,802,980
Effective search space: 5299466840
Effective search space used: 5299466840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034292.2| exostosin-1 [Mus musculus]. 856 0.0
Alignment gi|NP_062524.2| exostosin-like 1 [Mus musculus]. 316 3e-86
Alignment gi|NP_034293.2| exostosin-2 [Mus musculus]. 210 2e-54
Alignment gi|NP_061258.2| exostosin-like 3 [Mus musculus]. 83 6e-16
>ref|NP_034292.2| exostosin-1 [Mus musculus].
Length = 746
Score = 856 bits (2212), Expect = 0.0
Identities = 424/466 (90%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
L+SKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDV+
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVL 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533
Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 534 VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592
Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL +HYL
Sbjct: 593 PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYL 638
>ref|NP_062524.2| exostosin-like 1 [Mus musculus].
Length = 669
Score = 316 bits (809), Expect = 3e-86
Identities = 195/458 (42%), Positives = 265/458 (57%), Gaps = 4/458 (0%)
Frame = +2
Query: 32 WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
WN GRN +GQAM+A+AS S++ FRP FD+++P + HP
Sbjct: 150 WNGGRNHLVLSLYPAPCTR--------LGQAMVAEASPSSDIFRPGFDLALPYLPEAHPL 201
Query: 212 TGGERGFLKFNTIPPLRKYMLVF--KGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHG 385
GG G L+ ++ P + V KG+ +T + + C
Sbjct: 202 RGGAPGKLQQHSPQPGATLLAVAEEKGRWRITSTHA------------------SACL-- 241
Query: 386 KDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLS 565
W +H C++D + Y E L NATFCL+P G R + FL+ALQA C+PV+LS
Sbjct: 242 --WDRH----CEQDPGPQQTYP-GETLPNATFCLIP-GHRSATSCFLQALQAGCIPVLLS 293
Query: 566 NGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEK 745
WELPFSEVI+W +AA+I DERL LQ+ + +R + ++LALRQQTQFLW AYFSSVEK
Sbjct: 294 PRWELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQTQFLWTAYFSSVEK 353
Query: 746 IVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFT 925
++ TTLEIIQDRI+ SL+WN PG L LP +S+ L DFP+Y+ LG P S F+
Sbjct: 354 VIHTTLEIIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPFYHLQLGSGPGSSFS 413
Query: 926 AVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEG 1105
AVI + + + +LKL+ A S++CAQI++LWN +K P RWP TAVP+ VI+G
Sbjct: 414 AVIW----VGASGESLLKLIQEVAGSRHCAQILILWNSEKLPP--DRWPETAVPLTVIKG 467
Query: 1106 ESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGK 1279
KV S+RF PY NI T+ +LSLD LST++ + W FPER+VG + +HF
Sbjct: 468 HRKV-SNRFFPYSNISTNVILSLDAQSTLSTSEVDFAFVVW-QSFPERMVGFLSGSHFWD 525
Query: 1280 TLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
+ GY + TN++SM T A +YYH L TH L
Sbjct: 526 EAQGGWGYRTGMTNEFSMVLTTAAFYHRYYHTLFTHSL 563
>ref|NP_034293.2| exostosin-2 [Mus musculus].
Length = 718
Score = 210 bits (535), Expect = 2e-54
Identities = 143/460 (31%), Positives = 234/460 (50%), Gaps = 5/460 (1%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKD 202
L W+ G N G PDY + +A+LA ST +R +DVSIP+FS
Sbjct: 177 LSRWDRGTNHLLFNMLPGAPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVFSP- 235
Query: 203 HPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKH 382
E + P R+Y L+ + + + AL H E V++L C +
Sbjct: 236 ---LSAEMALPE--KAPGPRRYFLL-SSQMAIHPEYREELEALQAKHQ-ESVLVLDKCTN 288
Query: 383 GKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVML 562
+ RC +++ +DY ++L ATFC V RG RLG + LQA CVPV++
Sbjct: 289 LSEGVLSVRKRCH----QHQVFDYPQVLQEATFCTVLRGARLGQAVLSDVLQAGCVPVVI 344
Query: 563 SNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVE 742
++ + LPFSEV++W +A+V+ E + + S +++I Q +I +++Q ++ WEAYF S++
Sbjct: 345 ADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQNIPQRQIEEMQRQARWFWEAYFQSIK 404
Query: 743 KIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSK- 919
I L TL+II DRI+ + + + WN P + +L P P S+
Sbjct: 405 AIALATLQIINDRIYPYAAISYEEWNDPPAVKWASVSNPLFLPLIP---------PQSQG 455
Query: 920 FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPATAVPVIV 1096
FTA++ + + + +++ +K ++++V+W N +K P + WP VP+ V
Sbjct: 456 FTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEESLWPKIRVPLKV 511
Query: 1097 IEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIVG*PART 1267
+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +FP+R+VG P R
Sbjct: 512 VRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLVGYPGRL 570
Query: 1268 HFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
H + Y S TN+ SM TG A KY++YL T+
Sbjct: 571 HLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|NP_061258.2| exostosin-like 3 [Mus musculus].
Length = 919
Score = 82.8 bits (203), Expect = 6e-16
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 38/261 (14%)
Frame = +2
Query: 116 GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
G+AM+A+++ +R FD+ + PL E F++ +P RKY+ F+G+
Sbjct: 294 GRAMVAQSTFYAAQYRAGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348
Query: 290 RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
+ R++L + E+ + ++ T K +DS+ D+ E
Sbjct: 349 KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397
Query: 437 Y------------------EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQA 541
+ E+ D E+L +TF L+ P L + R EAL+
Sbjct: 398 FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLLISSGCATRLFEALEV 457
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
VPV+L +LP+ +++ WN+AA++ + + ++ +RS+ +LA+R+Q +FLWE
Sbjct: 458 GAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517
Query: 722 AYFSSVEKIVLTTLEIIQDRI 784
YFS+ + I T L +I+ RI
Sbjct: 518 TYFSTADSIFNTVLAMIRTRI 538
Score = 71.6 bits (174), Expect = 1e-12
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
Y +++V+WN K WP VP++V+ E +++RFLP++ I T+A+LS+D D
Sbjct: 688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747
Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
L + + V + +RIVG P R H + Y SN + + SM TG A K
Sbjct: 748 HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807
Query: 1364 YYHYL 1378
YY YL
Sbjct: 808 YYAYL 812
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,471,229
Number of extensions: 1353834
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3536
Number of HSP's successfully gapped: 5
Length of query: 464
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 359
Effective length of database: 12,463,779
Effective search space: 4474496661
Effective search space used: 4474496661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa]. 860 0.0
Alignment gi|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa]. 305 5e-83
Alignment gi|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa]. 207 1e-53
Alignment gi|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa]. 86 6e-17
>ref|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa].
Length = 746
Score = 860 bits (2223), Expect = 0.0
Identities = 428/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
Frame = +2
Query: 2 LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
LKSKVQSLHLWNNGRN GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174 LKSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233
Query: 182 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234 IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473
Query: 902 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474 LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533
Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLD+D VLSTT+ + W FPERIVG
Sbjct: 534 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592
Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
PAR+HF K R GY S TNDYSM TG AI KYYHYL THYL
Sbjct: 593 PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638
>ref|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa].
Length = 674
Score = 305 bits (780), Expect = 5e-83
Identities = 187/456 (41%), Positives = 259/456 (56%), Gaps = 2/456 (0%)
Frame = +2
Query: 32 WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
W+ GRN P F +GQAM+A+A + + FR FDV++PL + HP
Sbjct: 151 WDGGRNHLVLGLHPAPCPR-----PFQLGQAMVAQARPTVDTFRAGFDVALPLLPEAHPL 205
Query: 212 TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
GG G L+ ++ P + + + + G+++ + C
Sbjct: 206 RGGAPGQLRQHSPHPGMALLALAEERGGWHTAGTNS----------------SACP---- 245
Query: 392 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
W H C++D+ + + L NATFCL+P GR + FL+ALQA C+PV+LS
Sbjct: 246 WDGH----CEQDHGPKQTHP-GATLPNATFCLIP-GRSSDALHFLQALQAGCIPVLLSPR 299
Query: 572 WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
WELPFSEVI+W +AA++ DERL LQ+ + ++ + ++LALRQQTQFLW+AYFS+VEK++
Sbjct: 300 WELPFSEVIDWTKAAIVADERLSLQVLTALQEMPLTRVLALRQQTQFLWDAYFSTVEKVI 359
Query: 752 LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
TTLEIIQDRI + SL+WN PG L LP +S+ DFP+Y+ G +P KF+A+
Sbjct: 360 HTTLEIIQDRISGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQQGSRPLGKFSAL 419
Query: 932 IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
I P Q +KL+ A A SQ+CAQI+VLW+ +KP P R P TAVP+ VI+G
Sbjct: 420 IWVEAP----GQLPVKLIQAMAGSQHCAQILVLWSSEKPPPP--RLPETAVPLTVIDGPR 473
Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGKTL 1285
KV S RF PY I TDA+LSLD LST++ + W FPER+VG HF
Sbjct: 474 KV-SGRFFPYSAINTDAILSLDAHSSLSTSEVDFAFVVW-QSFPERMVGFLTWNHFWDEA 531
Query: 1286 KRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
+ GY + N++SM T A +YYH L TH L
Sbjct: 532 RGSWGYTAERANEFSMVLTSAAFYHRYYHTLFTHSL 567
>ref|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa].
Length = 718
Score = 207 bits (527), Expect = 1e-53
Identities = 143/471 (30%), Positives = 235/471 (49%), Gaps = 16/471 (3%)
Frame = +2
Query: 23 LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
L W+ G N G PDY + +A+LA ST +R +DVSIP++S
Sbjct: 177 LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236
Query: 200 ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
D P G P R++ L+ + + R L +GE V+
Sbjct: 237 SAEVDLPEKG-----------PGPRRFFLLSSQ----VALHPEYREELDALQARHGEAVL 281
Query: 362 LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
+L C + + RC + ++ +DY ++L ATFC+V RG RLG + L+A
Sbjct: 282 VLDKCTNLSEGVPAARKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLRA 337
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
CVPV++++ + LPFSEV++W +A+V+ E + + S ++SI + ++ +++Q ++ WE
Sbjct: 338 GCVPVVIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQMEEMQRQARWFWE 397
Query: 722 AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
AYF S++ I L TL+II DRI+ + + + WN P G P +
Sbjct: 398 AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPSVKWGSVSNPLF------------ 445
Query: 893 NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
L L PP FTA++ + + + +++ +K ++++V+W N +K P
Sbjct: 446 -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 500
Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
WP VP+ V+ +S+RF PYD I T+AVL++D D ++ T+ ++ W +F
Sbjct: 501 LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 559
Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
P+R+VG P R H + Y S TN+ SM TG A KY++YL T+
Sbjct: 560 PDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610
>ref|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa].
Length = 826
Score = 85.5 bits (210), Expect = 6e-17
Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
Frame = +2
Query: 116 GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
G+AM+A+++ +RP FD+ + PL E F++ +P RKY+ F+G+
Sbjct: 294 GRAMVAQSTFYAAQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348
Query: 290 RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
+ R++L + E+ + ++ T K +DS+ D+ E
Sbjct: 349 KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397
Query: 437 Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
+ E+ D E+L +TF L+ P L + R EAL+
Sbjct: 398 FTCKNQPRPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEV 457
Query: 542 ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
VPV+L +LP+ +++ W++AA++ + + ++ +RS+ +LA+R+Q +FLWE
Sbjct: 458 GAVPVVLGEQVQLPYQDMLQWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517
Query: 722 AYFSSVEKIVLTTLEIIQDRI 784
YFS+ + I T L +I+ RI
Sbjct: 518 TYFSTADSIFSTVLAVIRTRI 538
Score = 53.5 bits (127), Expect = 3e-07
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKD 1183
Y Q++V+WN + WP VP++V+ E +++RFLP++ I T+A+LS+D D
Sbjct: 688 YLTQVVVVWNFSQLPSDDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDD 746
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,739,426
Number of extensions: 1040433
Number of successful extensions: 2700
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 5
Length of query: 464
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,804,438
Effective search space: 3187206556
Effective search space used: 3187206556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007499
(1393 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 761 0.0
Sscrofa_Chr06 133 3e-28
>Sscrofa_Chr04
|| Length = 143465943
Score = 761 bits (384), Expect = 0.0
Identities = 426/447 (95%)
Strand = Plus / Plus
Query: 1 tttgaaatccaaagtgcagagtctccacttgtggaacaatggtaggaatcnnnnnnnnnn 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21838950 tttgaaatccaaagtgcagagtctccacttgtggaacaatggtaggaatcatttaatttt 21839009
Query: 61 nnnnnnnnnnnccggcacttggcctgactacactgaggacgtggggtttgacatcggcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839010 taatttatattccggcacttggcctgactacactgaggacgtggggtttgacatcggcca 21839069
Query: 121 ggcgatgctggccaaagccagcatcagtactgaaaacttccgacccaactttgatgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839070 ggcgatgctggccaaagccagcatcagtactgaaaacttccgacccaactttgatgtttc 21839129
Query: 181 tattcccctcttttctaaggatcatcccaggacaggaggggagagggggtttttaaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839130 tattcccctcttttctaaggatcatcccaggacaggaggggagagggggtttttaaagtt 21839189
Query: 241 taacaccatccctcctctcaggaagtacatgctggtattcaaggggaagaggtacctgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839190 taacaccatccctcctctcaggaagtacatgctggtattcaaggggaagaggtacctgac 21839249
Query: 301 agggatagggtcagacaccaggaatgccttatatcacgtccataacggggaggacgtcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839250 agggatagggtcagacaccaggaatgccttatatcacgtccataacggggaggacgtcgt 21839309
Query: 361 gcttcttaccacctgcaagcatggcaaagactggcaaaagcacaaggattctcgctgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839310 gcttcttaccacctgcaagcatggcaaagactggcaaaagcacaaggattctcgctgtga 21839369
Query: 421 ccgagacaacaccgagtatgagaagta 447
|||||||||||||||||||||||||||
Sbjct: 21839370 ccgagacaacaccgagtatgagaagta 21839396
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 765 agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106017 agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 22106076
Query: 825 atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106077 atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 22106136
Query: 885 actatgctaatttaggt 901
|||||||||||||||||
Sbjct: 22106137 actatgctaatttaggt 22106153
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 639 tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097099 tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 22097158
Query: 699 agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097159 agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 22097218
Query: 759 cactagag 766
||||||||
Sbjct: 22097219 cactagag 22097226
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 898 aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108799 aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 22108858
Query: 958 tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108859 tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 22108918
Query: 1018 a 1018
|
Sbjct: 22108919 a 22108919
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 536 caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091439 caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 22091498
Query: 596 attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 646
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091499 attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 22091549
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1019 atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22110041 atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 22110100
Query: 1079 gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 1116
||||||||||||||||||||||||||||||||||||||
Sbjct: 22110101 gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 22110138
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 445 gtatgattatcgggaaatgctgcacaatgccactttctgtctggttcctcgtggtcgcag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089758 gtatgattatcgggaaatgctgcacaatgccactttctgtctggttcctcgtggtcgcag 22089817
Query: 505 gcttgggtccttcaggttcctggaggctctgcagg 539
|||||||||||||||||||||||||||||||||||
Sbjct: 22089818 gcttgggtccttcaggttcctggaggctctgcagg 22089852
Score = 161 bits (81), Expect = 1e-36
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1113 aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22115015 aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 22115074
Query: 1173 tcgataaggaccccgtgctttccaccaca 1201
||||| ||||| |||||||||||||||||
Sbjct: 22115075 tcgatgaggacaccgtgctttccaccaca 22115103
Score = 87.7 bits (44), Expect = 2e-14
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1209 tttgccctcactgggtggcaga-tttccccgaaaggattgtggggtaacccgcgcgcacc 1267
|||||| |||||| |||||||| ||||||||| |||||||||||||| |||||||||| |
Sbjct: 22121217 tttgccttcactgtgtggcagagtttccccgagaggattgtggggtaccccgcgcgcagc 22121276
Query: 1268 cacttc-gggaaaactctaaagag 1290
|||||| |||| ||||||||||||
Sbjct: 22121277 cacttctgggataactctaaagag 22121300
>Sscrofa_Chr06
|| Length = 157765593
Score = 133 bits (67), Expect = 3e-28
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 975 tgaaactcctcgtggctgcagccaagtcccagtactgtgcccaaatcatagttctatgga 1034
||||||||||| ||| ||||||||| ||| ||||||||||||| || ||||||||| ||
Sbjct: 25716077 tgaaactcctcctgggtgcagccaaatcctagtactgtgcccagattatagttctacggc 25716018
Query: 1035 attgtgacaagcccctcccagccaaacaccgctggcctgccac 1077
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 25716017 attgtgacaagcccctcccagccaaacaccactggcctgccac 25715975
Score = 85.7 bits (43), Expect = 6e-14
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 854 tattcatcttatctgggagattttccttactactatgctaatttaggtctgaagcccccc 913
||||||||||||||||||| | ||||||||||| |||||||||||||| | |||||||||
Sbjct: 25716217 tattcatcttatctgggagctcttccttactaccatgctaatttaggtttaaagcccccc 25716158
Query: 914 tccaaattcac 924
|| ||| ||||
Sbjct: 25716157 tctaaaatcac 25716147
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,295,910
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 12
Length of query: 1393
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1372
Effective length of database: 2,808,413,156
Effective search space: 3853142850032
Effective search space used: 3853142850032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)