Animal-Genome cDNA 20110601C-007499


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001091564.1| exostosin-1 [Bos taurus].                         858   0.0  
Alignment   gi|NP_001093807.1| exostosin-like 1 [Bos taurus].                    311   9e-85
Alignment   gi|NP_803462.2| exostosin-2 [Bos taurus].                            211   1e-54
Alignment   gi|NP_001075942.1| exostosin-like 3 [Bos taurus].                     89   1e-17

>ref|NP_001091564.1| exostosin-1 [Bos taurus].
          Length = 746

 Score =  858 bits (2216), Expect = 0.0
 Identities = 425/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            L+SKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
            LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPAT+
Sbjct: 474  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATS 533

Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
            VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+  +    W   FPERIVG 
Sbjct: 534  VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592

Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL THYL
Sbjct: 593  PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638


>ref|NP_001093807.1| exostosin-like 1 [Bos taurus].
          Length = 675

 Score =  311 bits (797), Expect = 9e-85
 Identities = 184/430 (42%), Positives = 256/430 (59%), Gaps = 1/430 (0%)
 Frame = +2

Query: 107  FDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKG 286
            F +GQAM+A+AS + + FRP FDV++PL  + HP  GG  G L+ ++  P    + + + 
Sbjct: 172  FQLGQAMVAEASPTMDTFRPGFDVALPLLPEAHPLRGGALGQLQQHSPLPGVALIAMAEE 231

Query: 287  KRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREML 466
            +     +G++                 + C     W    D RC++D+   + +  R  L
Sbjct: 232  RGGWRTVGTN----------------FSACP----W----DGRCEQDHGPKQTHP-RATL 266

Query: 467  HNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQ 646
             NATFCL+P GR   +  FL+ALQA C+PV+LS  WELPFSEVI+W +AAV+ DERL LQ
Sbjct: 267  PNATFCLIP-GRNPDALHFLQALQAGCIPVLLSPRWELPFSEVIDWTKAAVVADERLPLQ 325

Query: 647  IPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKH 826
            + + ++ +   ++LALRQQ QFLW+AYFSSVEK++ TTLEIIQDR+    +  SL+WN  
Sbjct: 326  VLAALQEMPLTRVLALRQQAQFLWDAYFSSVEKVIHTTLEIIQDRVSGASAHPSLLWNSP 385

Query: 827  PGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQ 1006
            PG L  L  +S+   DFP+Y+   G +P  +F+A+I     + +  QP LKL+ A A +Q
Sbjct: 386  PGALLALSTFSTSPSDFPFYHLQQGSRPLGRFSALIW----VGALGQPPLKLIQAVAGAQ 441

Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
            +CAQI+VLW+  KP P   RWP TAVP+ V++G  K  S RFLPY  I TDA+LSLD   
Sbjct: 442  HCAQILVLWSSKKPPPP--RWPETAVPLTVLDGHRKA-SDRFLPYSAISTDAILSLDAHS 498

Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
             LST++      V   FPER+VG    +HF    +   GY     N++SM  T  A   +
Sbjct: 499  SLSTSEVDFAFMVWQSFPERMVGFLTWSHFWDETQGGWGYTGERANEFSMVLTSAAFYHR 558

Query: 1364 YYHYL*THYL 1393
            YYH L TH L
Sbjct: 559  YYHTLFTHSL 568


>ref|NP_803462.2| exostosin-2 [Bos taurus].
          Length = 718

 Score =  211 bits (537), Expect = 1e-54
 Identities = 145/469 (30%), Positives = 232/469 (49%), Gaps = 14/469 (2%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
                D P  G           P  R+Y L+            D   A     +GE V++L
Sbjct: 237  SAEVDLPEKG-----------PGPRRYFLLSSQVALHPEYREDL--AALQARHGEAVLVL 283

Query: 368  TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
              C +  +       RC +     + +DY ++L  ATFC+V RG RLG     + L+A C
Sbjct: 284  DKCSNLSEGVPAARRRCHQQ----QAFDYPQVLQEATFCMVLRGARLGQAVLSDVLRAGC 339

Query: 548  VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
            VPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI + +I  +++Q ++ WEAY
Sbjct: 340  VPVIIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQIEEMQRQARWFWEAY 399

Query: 728  FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYANL 898
            F S++ I L TL+II DRI+ + + +   WN  P    G    P +             L
Sbjct: 400  FQSIKAIALATLQIINDRIYPYAAISYEDWNDPPAVKWGSVSNPLF-------------L 446

Query: 899  GLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRW 1069
             L PP    FTA++        + + + +++   +K    ++++V+W N +K  P    W
Sbjct: 447  PLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLW 502

Query: 1070 PATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPE 1240
            P   VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +FP+
Sbjct: 503  PKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPD 561

Query: 1241 RIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            R+VG P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 562  RLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|NP_001075942.1| exostosin-like 3 [Bos taurus].
          Length = 919

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 38/261 (14%)
 Frame = +2

Query: 116  GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
            G+AM+A+++     +RP FD+ + PL          E  F++    +P  RKY+  F+G+
Sbjct: 294  GRAMVAQSTFYAAQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348

Query: 290  RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
            +         R++L    + E+ +           ++ T K        +DS+ D+   E
Sbjct: 349  KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397

Query: 437  Y------------------EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQA 541
            +                  E+ D  E+L  +TF L+  P   RL      + R  EAL+ 
Sbjct: 398  FTCKSQPRASLPTEWALCGEREDRLELLKLSTFALIITPGDPRLLVSSGCATRLFEALEV 457

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
              VPV+L    +LP+ +V+ W++AA++  +  + ++   +RS+    +LA+R+Q +FLWE
Sbjct: 458  GAVPVVLGEHVQLPYQDVLQWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517

Query: 722  AYFSSVEKIVLTTLEIIQDRI 784
             YFS+ + I  T L +I+ RI
Sbjct: 518  TYFSTTDSIFSTVLAVIRTRI 538



 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
 Frame = +2

Query: 1007 YCAQIIVLWNCDKPLPAKHR-WPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKD 1183
            Y  +++V+WN  K LP++   WP   VP++V+  E   +++RFLP++ I T+A+LS+D D
Sbjct: 688  YLNKVVVVWNSPK-LPSEDLVWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDD 746

Query: 1184 PVLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISP 1360
              L   + +    V  +  +RIVG P R H      +   Y SN + + SM  TG A   
Sbjct: 747  AHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFH 806

Query: 1361 KYYHYL 1378
            KYY YL
Sbjct: 807  KYYAYL 812


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,779,435
Number of extensions: 1590859
Number of successful extensions: 4179
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 6
Length of query: 464
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,174,046
Effective search space: 5074308468
Effective search space used: 5074308468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539145.2| PREDICTED: similar to Exostosin-1 (Glucuronosyl...   859   0.0  
Alignment   gi|XP_861097.1| PREDICTED: similar to Exostosin-1 (Glucuronosyl...   785   0.0  
Alignment   gi|XP_544489.1| PREDICTED: similar to Exostosin-like 1 (Glucuro...   320   3e-87
Alignment   gi|XP_862247.1| PREDICTED: similar to Exostosin-2 (Glucuronosyl...   214   2e-55
Alignment   gi|XP_533196.2| PREDICTED: similar to Exostosin-2 (Glucuronosyl...   214   2e-55
Alignment   gi|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like...    87   5e-17

>ref|XP_539145.2| PREDICTED: similar to Exostosin-1
            (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
            acetylglucosaminyl-proteoglycan
            4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
            suppressor protein EXT1) (Multiple exostoses protein 1)
            isoform 1 [Canis familiaris].
          Length = 746

 Score =  859 bits (2219), Expect = 0.0
 Identities = 426/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            L+SKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
            LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533

Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
            VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+  +    W   FPERIVG 
Sbjct: 534  VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592

Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL THYL
Sbjct: 593  PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638


>ref|XP_861097.1| PREDICTED: similar to Exostosin-1
            (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
            acetylglucosaminyl-proteoglycan
            4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
            suppressor protein EXT1) (Multiple exostoses protein 1)
            isoform 2 [Canis familiaris].
          Length = 746

 Score =  785 bits (2027), Expect = 0.0
 Identities = 397/467 (85%), Positives = 404/467 (86%), Gaps = 3/467 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            L+SKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCA-QIIVLWNCDKPLPAKHRWPAT 1078
             KPP  F  + H        S P  K          C  QIIVLWNCDKPLPAKHRWPAT
Sbjct: 474  KKPPPLF-LLCHPCGDPPGLSVPASKKQTWCHLMTPCPFQIIVLWNCDKPLPAKHRWPAT 532

Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG 1252
            AVPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+  +    W   FPERIVG
Sbjct: 533  AVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVG 591

Query: 1253 *PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
             PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL THYL
Sbjct: 592  YPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638


>ref|XP_544489.1| PREDICTED: similar to Exostosin-like 1
            (Glucuronosyl-N-acetylglucosaminyl-proteoglycan
            4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L)
            (Multiple exostosis-like protein) [Canis familiaris].
          Length = 672

 Score =  320 bits (819), Expect = 3e-87
 Identities = 192/456 (42%), Positives = 263/456 (57%), Gaps = 2/456 (0%)
 Frame = +2

Query: 32   WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
            WN G+N           P       F  GQAM+AKAS + + FRP FDV++PL  + HP 
Sbjct: 153  WNGGKNQLVLSLHPALCPQT-----FPPGQAMVAKASPAVDTFRPGFDVALPLLPEAHPL 207

Query: 212  TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
             GG  G L+ ++  P    + + + +      G+D+                  C     
Sbjct: 208  RGGAPGQLRQHSPHPGVPLLALAEERGGWRVAGADS----------------PACP---- 247

Query: 392  WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
            W    D RC++ N   E+      L NATFC++P G R  +  FL+ALQA C+PV+LS  
Sbjct: 248  W----DGRCEQ-NRGPEQTPLGATLPNATFCVIP-GHRPEALHFLQALQAGCIPVLLSPR 301

Query: 572  WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
            WELPFSEVI+W +AA++ D+RL  Q+ + ++ +   ++LALRQQTQFLW+AYFSSVEK++
Sbjct: 302  WELPFSEVIDWTKAAIVADKRLPFQVLAALQEMPPTRVLALRQQTQFLWDAYFSSVEKVI 361

Query: 752  LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
             TTLEIIQDRIF   +  SL+WN  PG L  LP +S+   DFP+Y+   G +P  +F+A+
Sbjct: 362  HTTLEIIQDRIFGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQRGSRPVGRFSAL 421

Query: 932  IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
            I    P     QP LKL+ A A SQ+CAQI+VLW+ +KPLP   RWP T VP+ V+ G+ 
Sbjct: 422  IWVGAP----GQPPLKLIQAVAGSQHCAQILVLWSSEKPLPP--RWPKTTVPLTVLAGQR 475

Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGKTL 1285
            KV S RF P+  I TDA+LSLD    L+T++  +    W   FPER+VG    +HF    
Sbjct: 476  KV-SDRFFPHRAISTDAILSLDAHSSLTTSEVDFAFAVW-QSFPERMVGFLTWSHFWDEA 533

Query: 1286 KRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            +   GY +  TN++SM  T  A   +YYH L TH L
Sbjct: 534  QGGWGYTAERTNEFSMVLTSAAFYHRYYHTLFTHSL 569


>ref|XP_862247.1| PREDICTED: similar to Exostosin-2
            (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
            acetylglucosaminyl-proteoglycan
            4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
            suppressor protein EXT2) (Multiple exostoses protein 2)
            isoform 3 [Canis familiaris].
          Length = 646

 Score =  214 bits (544), Expect = 2e-55
 Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 11/466 (2%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
                D P  G           P  R+Y L+            D         +GE V++L
Sbjct: 237  SAEVDLPEKG-----------PGPRRYFLLSSQMAVHPEYREDLE--AIQAKHGESVLVL 283

Query: 368  TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
              C +  +       RC     E++ YDY ++L  ATFC+V RG RLG     + L+A C
Sbjct: 284  DKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGC 339

Query: 548  VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
            VPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI Q +I  +++Q ++ WEAY
Sbjct: 340  VPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWEAY 399

Query: 728  FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLK 907
            F S++ I L TL+II DRI+ + + +   WN  P       ++ S     P +   L L 
Sbjct: 400  FQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PLF---LPLI 449

Query: 908  PPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPAT 1078
            PP    FTA++        + + + +++   +K    ++++V+W N +K  P    WP  
Sbjct: 450  PPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKI 505

Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIV 1249
             VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +FP+R+V
Sbjct: 506  RVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLV 564

Query: 1250 G*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            G P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 565  GYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|XP_533196.2| PREDICTED: similar to Exostosin-2
            (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
            acetylglucosaminyl-proteoglycan
            4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
            suppressor protein EXT2) (Multiple exostoses protein 2)
            isoform 2 [Canis familiaris].
          Length = 718

 Score =  214 bits (544), Expect = 2e-55
 Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 11/466 (2%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLL 367
                D P  G           P  R+Y L+            D         +GE V++L
Sbjct: 237  SAEVDLPEKG-----------PGPRRYFLLSSQMAVHPEYREDLE--AIQAKHGESVLVL 283

Query: 368  TTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAAC 547
              C +  +       RC     E++ YDY ++L  ATFC+V RG RLG     + L+A C
Sbjct: 284  DKCTNLSEGVLSVRKRC----REHQVYDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGC 339

Query: 548  VPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAY 727
            VPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI Q +I  +++Q ++ WEAY
Sbjct: 340  VPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWEAY 399

Query: 728  FSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLK 907
            F S++ I L TL+II DRI+ + + +   WN  P       ++ S     P +   L L 
Sbjct: 400  FQSIKAIALATLQIINDRIYPYAALSYEEWNDPP-----TVKWGSVSN--PLF---LPLI 449

Query: 908  PPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPAT 1078
            PP    FTA++        + + + +++   +K    ++++V+W N +K  P    WP  
Sbjct: 450  PPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKI 505

Query: 1079 AVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIV 1249
             VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +FP+R+V
Sbjct: 506  RVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLV 564

Query: 1250 G*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            G P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 565  GYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|XP_850237.1| PREDICTED: similar to exostoses (multiple)-like 3 [Canis familiaris].
          Length = 919

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
 Frame = +2

Query: 116  GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
            G+AM+A+++     +RP FD+ + PL          E  F++    +P  RKY+  F+G+
Sbjct: 294  GRAMVAQSTFYASQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348

Query: 290  RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
            +         R++L    + E+ +           ++ T K        +DS+ D+   E
Sbjct: 349  KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397

Query: 437  Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
            +                  E+ D  E+L  +TF L+  P    L      + R  EAL+ 
Sbjct: 398  FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEV 457

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
              VPV+L    +LP+ +++ WN+AA++  +  + ++   +RS+    +LA+R+Q +FLWE
Sbjct: 458  GAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517

Query: 722  AYFSSVEKIVLTTLEIIQDRI 784
             YFS+ + I  T L +I+ RI
Sbjct: 518  TYFSTADSIFNTVLAMIRTRI 538



 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = +2

Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
            Y  +++V+WN  K       WP   VP++V+  E   +++RFLP++ I T+A+LS+D D 
Sbjct: 688  YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747

Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
             L   + +    V  +  +RIVG P R H      +   Y SN + + SM  TG A   K
Sbjct: 748  HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807

Query: 1364 YYHYL 1378
            YY YL
Sbjct: 808  YYAYL 812


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,318,356
Number of extensions: 1629720
Number of successful extensions: 4316
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4299
Number of HSP's successfully gapped: 8
Length of query: 464
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 358
Effective length of database: 15,340,888
Effective search space: 5492037904
Effective search space used: 5492037904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000118.2| exostosin-1 [Homo sapiens].                          857   0.0  
Alignment   gi|NP_004446.2| exostosin-like 1 [Homo sapiens].                     325   8e-89
Alignment   gi|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens].                216   4e-56
Alignment   gi|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens].                216   4e-56
Alignment   gi|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens].             182   6e-46
Alignment   gi|NP_001431.1| exostosin-like 3 [Homo sapiens].                      90   6e-18

>ref|NP_000118.2| exostosin-1 [Homo sapiens].
          Length = 746

 Score =  857 bits (2214), Expect = 0.0
 Identities = 424/466 (90%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            L+SKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
            LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533

Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
            VPV+VIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+  +    W   FPERIVG 
Sbjct: 534  VPVVVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592

Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL +HYL
Sbjct: 593  PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYL 638


>ref|NP_004446.2| exostosin-like 1 [Homo sapiens].
          Length = 676

 Score =  325 bits (832), Expect = 8e-89
 Identities = 194/455 (42%), Positives = 260/455 (57%), Gaps = 1/455 (0%)
 Frame = +2

Query: 32   WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
            WN GRN           P       F +GQAM+A+AS + ++FRP FDV++P   + HP 
Sbjct: 153  WNRGRNHLVLRLHPAPCPRT-----FQLGQAMVAEASPTVDSFRPGFDVALPFLPEAHPL 207

Query: 212  TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
             GG  G L+ ++  P    + +            + R        G              
Sbjct: 208  RGGAPGQLRQHSPQPGVALLAL-----------EEERGGWRTADTGSSAC---------P 247

Query: 392  WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
            W    D RC++D    +    +E L NATFCL+   R   + RFL+ALQA C+PV+LS  
Sbjct: 248  W----DGRCEQDPGPGQT-QRQETLPNATFCLISGHRPEAASRFLQALQAGCIPVLLSPR 302

Query: 572  WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
            WELPFSEVI+W +AA++ DERL LQ+ + ++ +   ++LALRQQTQFLW+AYFSSVEK++
Sbjct: 303  WELPFSEVIDWTKAAIVADERLPLQVLAALQEMSPARVLALRQQTQFLWDAYFSSVEKVI 362

Query: 752  LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
             TTLE+IQDRIF   +  SL+WN  PG L  L  +S+   DFP+YY   G +P  +F+A+
Sbjct: 363  HTTLEVIQDRIFGTSAHPSLLWNSPPGALLALSTFSTSPQDFPFYYLQQGSRPEGRFSAL 422

Query: 932  IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
            I    P     QP LKL+ A A SQ+CAQI+VLW+ ++PLP+  RWP TAVP+ VI+G  
Sbjct: 423  IWVGPP----GQPPLKLIQAVAGSQHCAQILVLWSNERPLPS--RWPETAVPLTVIDGHR 476

Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLK 1288
            KV S RF PY  I TDA+LSLD    LST++      V   FPER+VG    +HF     
Sbjct: 477  KV-SDRFYPYSTIRTDAILSLDARSSLSTSEVDFAFLVWQSFPERMVGFLTSSHFWDEAH 535

Query: 1289 RRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
               GY +  TN++SM  T  A   +YYH L TH L
Sbjct: 536  GGWGYTAERTNEFSMVLTTAAFYHRYYHTLFTHSL 570


>ref|NP_997005.1| exostosin-2 isoform 2 [Homo sapiens].
          Length = 718

 Score =  216 bits (550), Expect = 4e-56
 Identities = 149/471 (31%), Positives = 237/471 (50%), Gaps = 16/471 (3%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
                D P  G           P  R+Y L+        G+  + R  L    V +GE V+
Sbjct: 237  SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 281

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            +L  C +  +       RC +    ++ +DY ++L  ATFC+V RG RLG     + LQA
Sbjct: 282  VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 337

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
             CVPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI Q +I  +++Q ++ WE
Sbjct: 338  GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWE 397

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
            AYF S++ I L TL+II DRI+ + + +   WN  P    G    P +            
Sbjct: 398  AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF------------ 445

Query: 893  NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
             L L PP    FTA++        + + + +++   +K    ++++V+W N +K  P   
Sbjct: 446  -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 500

Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
             WP   VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +F
Sbjct: 501  LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 559

Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            P+R+VG P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 560  PDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|NP_000392.3| exostosin-2 isoform 1 [Homo sapiens].
          Length = 751

 Score =  216 bits (550), Expect = 4e-56
 Identities = 149/471 (31%), Positives = 237/471 (50%), Gaps = 16/471 (3%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 210  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 269

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
                D P  G           P  R+Y L+        G+  + R  L    V +GE V+
Sbjct: 270  SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 314

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            +L  C +  +       RC +    ++ +DY ++L  ATFC+V RG RLG     + LQA
Sbjct: 315  VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 370

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
             CVPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI Q +I  +++Q ++ WE
Sbjct: 371  GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWE 430

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
            AYF S++ I L TL+II DRI+ + + +   WN  P    G    P +            
Sbjct: 431  AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF------------ 478

Query: 893  NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
             L L PP    FTA++        + + + +++   +K    ++++V+W N +K  P   
Sbjct: 479  -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 533

Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
             WP   VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +F
Sbjct: 534  LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 592

Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            P+R+VG P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 593  PDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 643


>ref|NP_001171554.1| exostosin-2 isoform 3 [Homo sapiens].
          Length = 728

 Score =  182 bits (462), Expect = 6e-46
 Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 26/481 (5%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
                D P  G           P  R+Y L+        G+  + R  L    V +GE V+
Sbjct: 237  SAEVDLPEKG-----------PGPRQYFLLSSQ----VGLHPEYREDLEALQVKHGESVL 281

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            +L  C +  +       RC +    ++ +DY ++L  ATFC+V RG RLG     + LQA
Sbjct: 282  VLDKCTNLSEGVLSVRKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQA 337

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQ------ 703
             CVPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI Q +I  +++Q      
Sbjct: 338  GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQLFMEPA 397

Query: 704  TQFLWEAYFSSVEKIVLT----TLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSS 862
             +  W A    +  ++        +II DRI+ + + +   WN  P    G    P +  
Sbjct: 398  RRENWSAANHQMNSLIWPREQWDSQIINDRIYPYAAISYEEWNDPPAVKWGSVSNPLF-- 455

Query: 863  YLGDFPYYYANLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW- 1033
                       L L PP    FTA++        + + + +++   +K    ++++V+W 
Sbjct: 456  -----------LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWN 500

Query: 1034 NCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---K 1204
            N +K  P    WP   VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   +
Sbjct: 501  NQNKNPPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQ 560

Query: 1205 WICPHWVADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*T 1384
            +    W  +FP+R+VG P R H       +  Y S  TN+ SM  TG A   KY++YL T
Sbjct: 561  FGYEVW-REFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYT 619

Query: 1385 H 1387
            +
Sbjct: 620  Y 620


>ref|NP_001431.1| exostosin-like 3 [Homo sapiens].
          Length = 919

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 38/261 (14%)
 Frame = +2

Query: 116  GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
            G+AM+A+++  T  +RP FD+ + PL          E  F++    +P  RKY+  F+G+
Sbjct: 294  GRAMVAQSTFYTVQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348

Query: 290  RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
            +         R++L    + E+ +           ++ T K        +DS+ D+   E
Sbjct: 349  KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397

Query: 437  Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
            +                  E+ D  E+L  +TF L+  P   RL      + R  EAL+ 
Sbjct: 398  FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPRLVISSGCATRLFEALEV 457

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
              VPV+L    +LP+ +++ WN+AA++  +  + ++   +RS+    +LA+R+Q +FLWE
Sbjct: 458  GAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517

Query: 722  AYFSSVEKIVLTTLEIIQDRI 784
             YFS+ + I  T L +I+ RI
Sbjct: 518  TYFSTADSIFNTVLAMIRTRI 538



 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = +2

Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
            Y  +++V+WN  K       WP   VP++V+  E   +++RFLP++ I T+A+LS+D D 
Sbjct: 688  YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747

Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
             L   + +    V  +  +RIVG P R H      +   Y SN + + SM  TG A   K
Sbjct: 748  HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807

Query: 1364 YYHYL 1378
            YY YL
Sbjct: 808  YYAYL 812


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,285,249
Number of extensions: 1611036
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4186
Number of HSP's successfully gapped: 8
Length of query: 464
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,802,980
Effective search space: 5299466840
Effective search space used: 5299466840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034292.2| exostosin-1 [Mus musculus].                          856   0.0  
Alignment   gi|NP_062524.2| exostosin-like 1 [Mus musculus].                     316   3e-86
Alignment   gi|NP_034293.2| exostosin-2 [Mus musculus].                          210   2e-54
Alignment   gi|NP_061258.2| exostosin-like 3 [Mus musculus].                      83   6e-16

>ref|NP_034292.2| exostosin-1 [Mus musculus].
          Length = 746

 Score =  856 bits (2212), Expect = 0.0
 Identities = 424/466 (90%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            L+SKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDV+
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVL 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
            LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533

Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
            VPVIVIEGESKVMSSRFLPYDNI+TDAVLSLD+D VLSTT+  +    W   FPERIVG 
Sbjct: 534  VPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592

Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL +HYL
Sbjct: 593  PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYL 638


>ref|NP_062524.2| exostosin-like 1 [Mus musculus].
          Length = 669

 Score =  316 bits (809), Expect = 3e-86
 Identities = 195/458 (42%), Positives = 265/458 (57%), Gaps = 4/458 (0%)
 Frame = +2

Query: 32   WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
            WN GRN                     +GQAM+A+AS S++ FRP FD+++P   + HP 
Sbjct: 150  WNGGRNHLVLSLYPAPCTR--------LGQAMVAEASPSSDIFRPGFDLALPYLPEAHPL 201

Query: 212  TGGERGFLKFNTIPPLRKYMLVF--KGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHG 385
             GG  G L+ ++  P    + V   KG+  +T   +                  + C   
Sbjct: 202  RGGAPGKLQQHSPQPGATLLAVAEEKGRWRITSTHA------------------SACL-- 241

Query: 386  KDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLS 565
              W +H    C++D    + Y   E L NATFCL+P G R  +  FL+ALQA C+PV+LS
Sbjct: 242  --WDRH----CEQDPGPQQTYP-GETLPNATFCLIP-GHRSATSCFLQALQAGCIPVLLS 293

Query: 566  NGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEK 745
              WELPFSEVI+W +AA+I DERL LQ+ + +R +   ++LALRQQTQFLW AYFSSVEK
Sbjct: 294  PRWELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQTQFLWTAYFSSVEK 353

Query: 746  IVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFT 925
            ++ TTLEIIQDRI+      SL+WN  PG L  LP +S+ L DFP+Y+  LG  P S F+
Sbjct: 354  VIHTTLEIIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPFYHLQLGSGPGSSFS 413

Query: 926  AVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEG 1105
            AVI     + +  + +LKL+   A S++CAQI++LWN +K  P   RWP TAVP+ VI+G
Sbjct: 414  AVIW----VGASGESLLKLIQEVAGSRHCAQILILWNSEKLPP--DRWPETAVPLTVIKG 467

Query: 1106 ESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGK 1279
              KV S+RF PY NI T+ +LSLD    LST++  +    W   FPER+VG  + +HF  
Sbjct: 468  HRKV-SNRFFPYSNISTNVILSLDAQSTLSTSEVDFAFVVW-QSFPERMVGFLSGSHFWD 525

Query: 1280 TLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
              +   GY +  TN++SM  T  A   +YYH L TH L
Sbjct: 526  EAQGGWGYRTGMTNEFSMVLTTAAFYHRYYHTLFTHSL 563


>ref|NP_034293.2| exostosin-2 [Mus musculus].
          Length = 718

 Score =  210 bits (535), Expect = 2e-54
 Identities = 143/460 (31%), Positives = 234/460 (50%), Gaps = 5/460 (1%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKD 202
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP+FS  
Sbjct: 177  LSRWDRGTNHLLFNMLPGAPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVFSP- 235

Query: 203  HPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKH 382
                  E    +    P  R+Y L+   +  +     +   AL   H  E V++L  C +
Sbjct: 236  ---LSAEMALPE--KAPGPRRYFLL-SSQMAIHPEYREELEALQAKHQ-ESVLVLDKCTN 288

Query: 383  GKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVML 562
              +       RC     +++ +DY ++L  ATFC V RG RLG     + LQA CVPV++
Sbjct: 289  LSEGVLSVRKRCH----QHQVFDYPQVLQEATFCTVLRGARLGQAVLSDVLQAGCVPVVI 344

Query: 563  SNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVE 742
            ++ + LPFSEV++W +A+V+  E  +  + S +++I Q +I  +++Q ++ WEAYF S++
Sbjct: 345  ADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQNIPQRQIEEMQRQARWFWEAYFQSIK 404

Query: 743  KIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSK- 919
             I L TL+II DRI+ + + +   WN  P   +       +L   P         P S+ 
Sbjct: 405  AIALATLQIINDRIYPYAAISYEEWNDPPAVKWASVSNPLFLPLIP---------PQSQG 455

Query: 920  FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKHRWPATAVPVIV 1096
            FTA++        + + + +++   +K    ++++V+W N +K  P +  WP   VP+ V
Sbjct: 456  FTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEESLWPKIRVPLKV 511

Query: 1097 IEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADFPERIVG*PART 1267
            +      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +FP+R+VG P R 
Sbjct: 512  VRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REFPDRLVGYPGRL 570

Query: 1268 HFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 571  HLWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|NP_061258.2| exostosin-like 3 [Mus musculus].
          Length = 919

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 38/261 (14%)
 Frame = +2

Query: 116  GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
            G+AM+A+++     +R  FD+ + PL          E  F++    +P  RKY+  F+G+
Sbjct: 294  GRAMVAQSTFYAAQYRAGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348

Query: 290  RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
            +         R++L    + E+ +           ++ T K        +DS+ D+   E
Sbjct: 349  KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397

Query: 437  Y------------------EKYDYREMLHNATFCLV--PRGRRL-----GSFRFLEALQA 541
            +                  E+ D  E+L  +TF L+  P    L      + R  EAL+ 
Sbjct: 398  FTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLLISSGCATRLFEALEV 457

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
              VPV+L    +LP+ +++ WN+AA++  +  + ++   +RS+    +LA+R+Q +FLWE
Sbjct: 458  GAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517

Query: 722  AYFSSVEKIVLTTLEIIQDRI 784
             YFS+ + I  T L +I+ RI
Sbjct: 518  TYFSTADSIFNTVLAMIRTRI 538



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = +2

Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDP 1186
            Y  +++V+WN  K       WP   VP++V+  E   +++RFLP++ I T+A+LS+D D 
Sbjct: 688  YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDA 747

Query: 1187 VLSTTKWICPHWV-ADFPERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPK 1363
             L   + +    V  +  +RIVG P R H      +   Y SN + + SM  TG A   K
Sbjct: 748  HLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHK 807

Query: 1364 YYHYL 1378
            YY YL
Sbjct: 808  YYAYL 812


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,471,229
Number of extensions: 1353834
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3536
Number of HSP's successfully gapped: 5
Length of query: 464
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 359
Effective length of database: 12,463,779
Effective search space: 4474496661
Effective search space used: 4474496661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa].              860   0.0  
Alignment   gi|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa].         305   5e-83
Alignment   gi|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa].         207   1e-53
Alignment   gi|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa].     86   6e-17

>ref|XP_001925015.2| PREDICTED: exostosin-1 [Sus scrofa].
          Length = 746

 Score =  860 bits (2223), Expect = 0.0
 Identities = 428/466 (91%), Positives = 432/466 (92%), Gaps = 2/466 (0%)
 Frame = +2

Query: 2    LKSKVQSLHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 181
            LKSKVQSLHLWNNGRN        GTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS
Sbjct: 174  LKSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVS 233

Query: 182  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 361
            IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV
Sbjct: 234  IPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVV 293

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA
Sbjct: 294  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 353

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
            ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE
Sbjct: 354  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 413

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 901
            AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG
Sbjct: 414  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLG 473

Query: 902  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 1081
            LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA
Sbjct: 474  LKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATA 533

Query: 1082 VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG* 1255
            VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLD+D VLSTT+  +    W   FPERIVG 
Sbjct: 534  VPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTEVDFAFTVW-QSFPERIVGY 592

Query: 1256 PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            PAR+HF    K R GY S  TNDYSM  TG AI  KYYHYL THYL
Sbjct: 593  PARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYL 638


>ref|XP_003356260.1| PREDICTED: exostosin-like 1 [Sus scrofa].
          Length = 674

 Score =  305 bits (780), Expect = 5e-83
 Identities = 187/456 (41%), Positives = 259/456 (56%), Gaps = 2/456 (0%)
 Frame = +2

Query: 32   WNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPR 211
            W+ GRN           P       F +GQAM+A+A  + + FR  FDV++PL  + HP 
Sbjct: 151  WDGGRNHLVLGLHPAPCPR-----PFQLGQAMVAQARPTVDTFRAGFDVALPLLPEAHPL 205

Query: 212  TGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKD 391
             GG  G L+ ++  P    + + + +      G+++                + C     
Sbjct: 206  RGGAPGQLRQHSPHPGMALLALAEERGGWHTAGTNS----------------SACP---- 245

Query: 392  WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 571
            W  H    C++D+   + +     L NATFCL+P GR   +  FL+ALQA C+PV+LS  
Sbjct: 246  WDGH----CEQDHGPKQTHP-GATLPNATFCLIP-GRSSDALHFLQALQAGCIPVLLSPR 299

Query: 572  WELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIV 751
            WELPFSEVI+W +AA++ DERL LQ+ + ++ +   ++LALRQQTQFLW+AYFS+VEK++
Sbjct: 300  WELPFSEVIDWTKAAIVADERLSLQVLTALQEMPLTRVLALRQQTQFLWDAYFSTVEKVI 359

Query: 752  LTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAV 931
             TTLEIIQDRI    +  SL+WN  PG L  LP +S+   DFP+Y+   G +P  KF+A+
Sbjct: 360  HTTLEIIQDRISGASAHPSLLWNSPPGALLALPTFSTSPSDFPFYHLQQGSRPLGKFSAL 419

Query: 932  IHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGES 1111
            I    P     Q  +KL+ A A SQ+CAQI+VLW+ +KP P   R P TAVP+ VI+G  
Sbjct: 420  IWVEAP----GQLPVKLIQAMAGSQHCAQILVLWSSEKPPPP--RLPETAVPLTVIDGPR 473

Query: 1112 KVMSSRFLPYDNIVTDAVLSLDKDPVLSTTK--WICPHWVADFPERIVG*PARTHFGKTL 1285
            KV S RF PY  I TDA+LSLD    LST++  +    W   FPER+VG     HF    
Sbjct: 474  KV-SGRFFPYSAINTDAILSLDAHSSLSTSEVDFAFVVW-QSFPERMVGFLTWNHFWDEA 531

Query: 1286 KRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*THYL 1393
            +   GY +   N++SM  T  A   +YYH L TH L
Sbjct: 532  RGSWGYTAERANEFSMVLTSAAFYHRYYHTLFTHSL 567


>ref|XP_003122905.2| PREDICTED: exostosin-2-like [Sus scrofa].
          Length = 718

 Score =  207 bits (527), Expect = 1e-53
 Identities = 143/471 (30%), Positives = 235/471 (49%), Gaps = 16/471 (3%)
 Frame = +2

Query: 23   LHLWNNGRNXXXXXXXXGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSK- 199
            L  W+ G N        G  PDY   +     +A+LA    ST  +R  +DVSIP++S  
Sbjct: 177  LSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPL 236

Query: 200  ----DHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNAL--YHVHNGEDVV 361
                D P  G           P  R++ L+         +  + R  L      +GE V+
Sbjct: 237  SAEVDLPEKG-----------PGPRRFFLLSSQ----VALHPEYREELDALQARHGEAVL 281

Query: 362  LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQA 541
            +L  C +  +       RC +    ++ +DY ++L  ATFC+V RG RLG     + L+A
Sbjct: 282  VLDKCTNLSEGVPAARKRCHK----HQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLRA 337

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
             CVPV++++ + LPFSEV++W +A+V+  E  +  + S ++SI + ++  +++Q ++ WE
Sbjct: 338  GCVPVVIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQMEEMQRQARWFWE 397

Query: 722  AYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPG---GLFVLPQYSSYLGDFPYYYA 892
            AYF S++ I L TL+II DRI+ + + +   WN  P    G    P +            
Sbjct: 398  AYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPSVKWGSVSNPLF------------ 445

Query: 893  NLGLKPPSK--FTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLW-NCDKPLPAKH 1063
             L L PP    FTA++        + + + +++   +K    ++++V+W N +K  P   
Sbjct: 446  -LPLIPPQSQGFTAIVLT----YDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDS 500

Query: 1064 RWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKDPVLSTT---KWICPHWVADF 1234
             WP   VP+ V+      +S+RF PYD I T+AVL++D D ++ T+   ++    W  +F
Sbjct: 501  LWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVW-REF 559

Query: 1235 PERIVG*PARTHFGKTLKRRGGYPSN*TNDYSMC*TGTAISPKYYHYL*TH 1387
            P+R+VG P R H       +  Y S  TN+ SM  TG A   KY++YL T+
Sbjct: 560  PDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTY 610


>ref|XP_003359091.1| PREDICTED: exostosin-like 3-like [Sus scrofa].
          Length = 826

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
 Frame = +2

Query: 116  GQAMLAKASISTENFRPNFDVSI-PLFSKDHPRTGGERGFLKFNT-IPPLRKYMLVFKGK 289
            G+AM+A+++     +RP FD+ + PL          E  F++    +P  RKY+  F+G+
Sbjct: 294  GRAMVAQSTFYAAQYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGE 348

Query: 290  RYLTGIGSDTRNALYHVHNGEDVV-----------LLTTCKHGKDWQKHKDSRCDRDNTE 436
            +         R++L    + E+ +           ++ T K        +DS+ D+   E
Sbjct: 349  KI-----ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLK------AVQDSKLDQVLVE 397

Query: 437  Y------------------EKYDYREMLHNATFCLV--PRGRRLG-----SFRFLEALQA 541
            +                  E+ D  E+L  +TF L+  P    L      + R  EAL+ 
Sbjct: 398  FTCKNQPRPSLPTEWALCGEREDRLELLKLSTFALIITPGDPHLVISSGCATRLFEALEV 457

Query: 542  ACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWE 721
              VPV+L    +LP+ +++ W++AA++  +  + ++   +RS+    +LA+R+Q +FLWE
Sbjct: 458  GAVPVVLGEQVQLPYQDMLQWSEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWE 517

Query: 722  AYFSSVEKIVLTTLEIIQDRI 784
             YFS+ + I  T L +I+ RI
Sbjct: 518  TYFSTADSIFSTVLAVIRTRI 538



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 22/59 (37%), Positives = 37/59 (62%)
 Frame = +2

Query: 1007 YCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDKD 1183
            Y  Q++V+WN  +       WP   VP++V+  E   +++RFLP++ I T+A+LS+D D
Sbjct: 688  YLTQVVVVWNFSQLPSDDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDD 746


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,739,426
Number of extensions: 1040433
Number of successful extensions: 2700
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 5
Length of query: 464
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,804,438
Effective search space: 3187206556
Effective search space used: 3187206556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007499
         (1393 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         761   0.0  
Sscrofa_Chr06                                                         133   3e-28

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  761 bits (384), Expect = 0.0
 Identities = 426/447 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1        tttgaaatccaaagtgcagagtctccacttgtggaacaatggtaggaatcnnnnnnnnnn 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 21838950 tttgaaatccaaagtgcagagtctccacttgtggaacaatggtaggaatcatttaatttt 21839009

                                                                            
Query: 61       nnnnnnnnnnnccggcacttggcctgactacactgaggacgtggggtttgacatcggcca 120
                           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839010 taatttatattccggcacttggcctgactacactgaggacgtggggtttgacatcggcca 21839069

                                                                            
Query: 121      ggcgatgctggccaaagccagcatcagtactgaaaacttccgacccaactttgatgtttc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839070 ggcgatgctggccaaagccagcatcagtactgaaaacttccgacccaactttgatgtttc 21839129

                                                                            
Query: 181      tattcccctcttttctaaggatcatcccaggacaggaggggagagggggtttttaaagtt 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839130 tattcccctcttttctaaggatcatcccaggacaggaggggagagggggtttttaaagtt 21839189

                                                                            
Query: 241      taacaccatccctcctctcaggaagtacatgctggtattcaaggggaagaggtacctgac 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839190 taacaccatccctcctctcaggaagtacatgctggtattcaaggggaagaggtacctgac 21839249

                                                                            
Query: 301      agggatagggtcagacaccaggaatgccttatatcacgtccataacggggaggacgtcgt 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839250 agggatagggtcagacaccaggaatgccttatatcacgtccataacggggaggacgtcgt 21839309

                                                                            
Query: 361      gcttcttaccacctgcaagcatggcaaagactggcaaaagcacaaggattctcgctgtga 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21839310 gcttcttaccacctgcaagcatggcaaagactggcaaaagcacaaggattctcgctgtga 21839369

                                           
Query: 421      ccgagacaacaccgagtatgagaagta 447
                |||||||||||||||||||||||||||
Sbjct: 21839370 ccgagacaacaccgagtatgagaagta 21839396



 Score =  272 bits (137), Expect = 5e-70
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                            
Query: 765      agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 824
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106017 agattattcaggacagaatattcaagcacatatcacgtaacagtttaatatggaacaaac 22106076

                                                                            
Query: 825      atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 884
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22106077 atcctggaggattgttcgtactaccgcagtattcatcttatctgggagattttccttact 22106136

                                 
Query: 885      actatgctaatttaggt 901
                |||||||||||||||||
Sbjct: 22106137 actatgctaatttaggt 22106153



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                            
Query: 639      tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 698
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097099 tattacagattccttctacaatcaggtctattcatcaggataaaatcctagcacttagac 22097158

                                                                            
Query: 699      agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 758
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22097159 agcagacacaattcttgtgggaggcttatttttcttcagttgagaagattgtattaacta 22097218

                        
Query: 759      cactagag 766
                ||||||||
Sbjct: 22097219 cactagag 22097226



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 898      aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 957
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108799 aggtctgaagcccccctccaaattcactgcggtcatccatgcagtgactcccctggtctc 22108858

                                                                            
Query: 958      tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 1017
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22108859 tcagtcccagccagtgttgaaactcctcgtggctgcagccaagtcccagtactgtgccca 22108918

                 
Query: 1018     a 1018
                |
Sbjct: 22108919 a 22108919



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 536      caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 595
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091439 caggctgcctgtgtccctgtgatgctcagcaatggatgggagttgccattctctgaagtg 22091498

                                                                   
Query: 596      attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 646
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091499 attaattggaaccaagctgccgtcataggcgatgagcgattgttattacag 22091549



 Score =  194 bits (98), Expect = 9e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1019     atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 1078
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22110041 atcatagttctatggaattgtgacaagcccctcccagccaaacaccgctggcctgccact 22110100

                                                      
Query: 1079     gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 1116
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 22110101 gccgtgcctgtcatcgtcattgaaggagaaagcaaggt 22110138



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                            
Query: 445      gtatgattatcgggaaatgctgcacaatgccactttctgtctggttcctcgtggtcgcag 504
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089758 gtatgattatcgggaaatgctgcacaatgccactttctgtctggttcctcgtggtcgcag 22089817

                                                   
Query: 505      gcttgggtccttcaggttcctggaggctctgcagg 539
                |||||||||||||||||||||||||||||||||||
Sbjct: 22089818 gcttgggtccttcaggttcctggaggctctgcagg 22089852



 Score =  161 bits (81), Expect = 1e-36
 Identities = 87/89 (97%)
 Strand = Plus / Plus

                                                                            
Query: 1113     aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 1172
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22115015 aggtcatgagcagccgttttctaccgtatgacaacatcgtcacagacgccgtgctcagcc 22115074

                                             
Query: 1173     tcgataaggaccccgtgctttccaccaca 1201
                ||||| ||||| |||||||||||||||||
Sbjct: 22115075 tcgatgaggacaccgtgctttccaccaca 22115103



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/84 (90%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1209     tttgccctcactgggtggcaga-tttccccgaaaggattgtggggtaacccgcgcgcacc 1267
                |||||| |||||| |||||||| ||||||||| |||||||||||||| |||||||||| |
Sbjct: 22121217 tttgccttcactgtgtggcagagtttccccgagaggattgtggggtaccccgcgcgcagc 22121276

                                        
Query: 1268     cacttc-gggaaaactctaaagag 1290
                |||||| |||| ||||||||||||
Sbjct: 22121277 cacttctgggataactctaaagag 22121300


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  133 bits (67), Expect = 3e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                            
Query: 975      tgaaactcctcgtggctgcagccaagtcccagtactgtgcccaaatcatagttctatgga 1034
                ||||||||||| ||| ||||||||| ||| ||||||||||||| || ||||||||| || 
Sbjct: 25716077 tgaaactcctcctgggtgcagccaaatcctagtactgtgcccagattatagttctacggc 25716018

                                                           
Query: 1035     attgtgacaagcccctcccagccaaacaccgctggcctgccac 1077
                |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 25716017 attgtgacaagcccctcccagccaaacaccactggcctgccac 25715975



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 854      tattcatcttatctgggagattttccttactactatgctaatttaggtctgaagcccccc 913
                ||||||||||||||||||| | ||||||||||| |||||||||||||| | |||||||||
Sbjct: 25716217 tattcatcttatctgggagctcttccttactaccatgctaatttaggtttaaagcccccc 25716158

                           
Query: 914      tccaaattcac 924
                || ||| ||||
Sbjct: 25716157 tctaaaatcac 25716147


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,295,910
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 12
Length of query: 1393
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1372
Effective length of database: 2,808,413,156
Effective search space: 3853142850032
Effective search space used: 3853142850032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)