Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 ... 731 0.0
>ref|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 [Bos taurus].
Length = 407
Score = 731 bits (1886), Expect = 0.0
Identities = 354/378 (93%), Positives = 361/378 (95%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAP G K KKGILERLNSGEV+IGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1 MAPAGGKNVKKGILERLNSGEVIIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
GVSQTPSYLSCKSETEVKKVF+QQLEVF+KKNVDFLIAEYFEH LKASGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGDLH VTPG+CAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGL+AAGL
Sbjct: 181 VAATMCIGPEGDLHSVTPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLEAAGL 240
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLP ASEKHGSWGS LDMHTKPW+RARARKEYWENL+IASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPLASEKHGSWGSGLDMHTKPWIRARARKEYWENLQIASG 360
Query: 1691 RPYNPSMSKPDAWGVTKG 1744
RPYNPSMSKPDAWGVTKG
Sbjct: 361 RPYNPSMSKPDAWGVTKG 378
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,767,165
Number of extensions: 2393728
Number of successful extensions: 9200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9160
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 484
Effective length of database: 14,107,870
Effective search space: 6828209080
Effective search space used: 6828209080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-m... 733 0.0
Alignment gi|XP_546051.2| PREDICTED: similar to betaine-homocysteine meth... 568 e-162
>ref|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-methyltransferase
[Canis familiaris].
Length = 407
Score = 733 bits (1891), Expect = 0.0
Identities = 355/378 (93%), Positives = 363/378 (96%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAPVG +KA++GILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1 MAPVGGRKARRGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
GVSQTPSYLSCKSETEVKKVF+QQLEVF+KKNVDFLIAEYFEH LKASGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGDLHGV+PG+CAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGL AA L
Sbjct: 181 VAATMCIGPEGDLHGVSPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLDAARL 240
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARARKEYWENLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWENLRIASG 360
Query: 1691 RPYNPSMSKPDAWGVTKG 1744
RPYNPSMSKPDAWGVTKG
Sbjct: 361 RPYNPSMSKPDAWGVTKG 378
>ref|XP_546051.2| PREDICTED: similar to betaine-homocysteine methyltransferase 2 [Canis
familiaris].
Length = 363
Score = 568 bits (1463), Expect = e-162
Identities = 276/372 (74%), Positives = 312/372 (83%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAPVG AKKGILERL+SGEVV+GDG F+ LEKRGYVKAG WTPEA V+HP+AVRQLH
Sbjct: 1 MAPVGGPGAKKGILERLDSGEVVVGDGSFLITLEKRGYVKAGLWTPEAIVDHPDAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
EFLRAGSNVMQTFTF ASED + ++ + VN AACD+AR+VA +GDALVAG
Sbjct: 61 MEFLRAGSNVMQTFTFSASEDNMGSKW---------EDVNAAACDLAREVAGKGDALVAG 111
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
G+SQT Y K E VKK+F+ QLEVF++KNVDFLIAEYFEH LK SGKP
Sbjct: 112 GISQTSVYRHHKDEARVKKLFQLQLEVFIRKNVDFLIAEYFEHAEEAVWAVEVLKESGKP 171
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VA TMCIGP+GD+ GV PG+CAV+LVKAGA+IVGVNC F P+ SL+T+KLMKEGLQAAGL
Sbjct: 172 VAVTMCIGPDGDMCGVKPGECAVKLVKAGAAIVGVNCRFGPSTSLKTMKLMKEGLQAAGL 231
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
+AHL+ Q L +HTPDCGK G +DLPE+PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 232 QAHLIVQSLGFHTPDCGKGGVVDLPEYPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 291
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL ASG
Sbjct: 292 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351
Query: 1691 RPYNPSMSKPDA 1726
RP+ PS+S+PDA
Sbjct: 352 RPFCPSLSQPDA 363
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,093,306
Number of extensions: 2456819
Number of successful extensions: 9354
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9240
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 484
Effective length of database: 15,274,216
Effective search space: 7392720544
Effective search space used: 7392720544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Ho... 723 0.0
Alignment gi|NP_060084.2| betaine--homocysteine S-methyltransferase 2 iso... 573 e-163
Alignment gi|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 ... 369 e-102
>ref|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Homo sapiens].
Length = 406
Score = 723 bits (1867), Expect(2) = 0.0
Identities = 351/378 (92%), Positives = 358/378 (94%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
M PVG KKAKKGILERLN+GE+VIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1 MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
REFLRAGSNVMQTFTFYASEDKLENRGNYV EKISGQ+VNEAACDIARQVADEGDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
GVSQTPSYLSCKSETEVKKVF QQLEVFMKKNVDFLIAEYFEH L ASGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGDLHGV PG+CAVRLVKAGASI+GVNCHFDPTISL+TVKLMKEGL+AA L
Sbjct: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360
Query: 1691 RPYNPSMSKPDAWGVTKG 1744
RPYNPSMSKPD WGVTKG
Sbjct: 361 RPYNPSMSKPDGWGVTKG 378
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 1729 GSDQRTAELMQQKEAT 1776
G + TAELMQQKEAT
Sbjct: 374 GVTKGTAELMQQKEAT 389
>ref|NP_060084.2| betaine--homocysteine S-methyltransferase 2 isoform 1 [Homo sapiens].
Length = 363
Score = 573 bits (1476), Expect = e-163
Identities = 278/371 (74%), Positives = 307/371 (82%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAP G AKKGILERL SGEVVIGDG F+ LEKRGYVKAG WTPEA +EHP+AVRQLH
Sbjct: 1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
EFLRAGSNVMQTFTF ASED +E++ + VN AACD+AR+VA +GDALVAG
Sbjct: 61 MEFLRAGSNVMQTFTFSASEDNMESKW---------EDVNAAACDLAREVAGKGDALVAG 111
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
G+ QT Y K E +KK+FRQQLEVF KNVDFLIAEYFEH LK S +P
Sbjct: 112 GICQTSIYKYQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRP 171
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VA TMCIGPEGD+H +TPG+CAVRLVKAGASIVGVNC F P SL+T++LMKEGL+ AGL
Sbjct: 172 VAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGL 231
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLM QPL +H PDCGK+GF+DLPE+PFGLE RVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 232 KAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCC 291
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARAR+EYWENL ASG
Sbjct: 292 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASG 351
Query: 1691 RPYNPSMSKPD 1723
RP+ PS+SKPD
Sbjct: 352 RPFCPSLSKPD 362
>ref|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 isoform 2 [Homo sapiens].
Length = 299
Score = 369 bits (947), Expect = e-102
Identities = 170/218 (77%), Positives = 189/218 (86%)
Frame = +2
Query: 1070 DFLIAEYFEHXXXXXXXXXXLKASGKPVAATMCIGPEGDLHGVTPGQCAVRLVKAGASIV 1249
D + ++YFEH LK S +PVA TMCIGPEGD+H +TPG+CAVRLVKAGASIV
Sbjct: 81 DNMESKYFEHVEEAVWAVEVLKESDRPVAVTMCIGPEGDMHDITPGECAVRLVKAGASIV 140
Query: 1250 GVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEP 1429
GVNC F P SL+T++LMKEGL+ AGLKAHLM QPL +H PDCGK+GF+DLPE+PFGLE
Sbjct: 141 GVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLES 200
Query: 1430 RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS 1609
RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS
Sbjct: 201 RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS 260
Query: 1610 ALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 1723
LDMHTKPW+RARAR+EYWENL ASGRP+ PS+SKPD
Sbjct: 261 GLDMHTKPWIRARARREYWENLLPASGRPFCPSLSKPD 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,508,075
Number of extensions: 2406507
Number of successful extensions: 8895
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8831
Number of HSP's successfully gapped: 5
Length of query: 592
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 484
Effective length of database: 14,737,052
Effective search space: 7132733168
Effective search space used: 7132733168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mu... 729 0.0
Alignment gi|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mu... 553 e-157
>ref|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mus musculus].
Length = 407
Score = 729 bits (1882), Expect = 0.0
Identities = 352/378 (93%), Positives = 362/378 (95%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAPV KKAKKGILERLN+GEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1 MAPVAGKKAKKGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
GVSQTPSYLSCKSE EVKK+FRQQLEVFMKKNVDFLIAEYFEH LKASGKP
Sbjct: 121 GVSQTPSYLSCKSEVEVKKIFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGDLHGV PG+CAVRLVKAGASIVGVNCHFDP++SLQTVKLMKEGL+AA L
Sbjct: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIVGVNCHFDPSVSLQTVKLMKEGLEAARL 240
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KA+LMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARARKEYW+NLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWQNLRIASG 360
Query: 1691 RPYNPSMSKPDAWGVTKG 1744
RPYNPSMS+PDAWGVTKG
Sbjct: 361 RPYNPSMSRPDAWGVTKG 378
>ref|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mus musculus].
Length = 363
Score = 553 bits (1424), Expect = e-157
Identities = 265/372 (71%), Positives = 303/372 (81%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAP G +AKKGILERL+SGEVV+GD GF+F LEKRG+VKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPAGSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGFVKAGLWTPEAVVEHPSAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
EFLRAG++V+QTFTF A+ED + ++ + VN AACD+A++VA G ALVAG
Sbjct: 61 TEFLRAGADVLQTFTFSATEDNMASKW---------EAVNAAACDLAQEVAGGGGALVAG 111
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
G+ QT Y K ET +K +FR QLEVF +KNVDFLIAEYFEH L+ G P
Sbjct: 112 GICQTSLYKYHKDETRIKNIFRLQLEVFARKNVDFLIAEYFEHVEEAVWAVEVLREVGAP 171
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VA TMCIGPEGD+H VTPG+CAV+L +AGA I+GVNC F P SLQT+KLMKEGL+ A L
Sbjct: 172 VAVTMCIGPEGDMHDVTPGECAVKLARAGADIIGVNCRFGPWTSLQTMKLMKEGLRDASL 231
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
+AHLM Q L +HTPDCGK GF+DLPE+PFGLEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 232 QAHLMVQCLGFHTPDCGKGGFVDLPEYPFGLEPRVATRWDIQKYAREAYNLGIRYIGGCC 291
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL ASG
Sbjct: 292 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351
Query: 1691 RPYNPSMSKPDA 1726
RP+ PS+SKPDA
Sbjct: 352 RPFCPSLSKPDA 363
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,392,922
Number of extensions: 2010640
Number of successful extensions: 7309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7267
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 485
Effective length of database: 12,403,707
Effective search space: 6015797895
Effective search space used: 6015797895
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 ... 754 0.0
Alignment gi|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 ... 574 e-164
Alignment gi|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltra... 369 e-102
Alignment gi|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltra... 366 e-101
>ref|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 [Sus scrofa].
Length = 407
Score = 754 bits (1946), Expect = 0.0
Identities = 368/378 (97%), Positives = 368/378 (97%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEH LKASGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL
Sbjct: 181 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 240
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 360
Query: 1691 RPYNPSMSKPDAWGVTKG 1744
RPYNPSMSKPDAWGVTKG
Sbjct: 361 RPYNPSMSKPDAWGVTKG 378
>ref|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 [Sus scrofa].
Length = 363
Score = 574 bits (1479), Expect = e-164
Identities = 276/371 (74%), Positives = 312/371 (84%)
Frame = +2
Query: 611 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
MAP G +AKKGILERL++GEVV+GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 60
Query: 791 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 111
Query: 971 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
G+ QT Y K E +KK+FR QLEVF++KNVDFLIAEYFE+ LK SGKP
Sbjct: 112 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIAEYFEYAEEAVWAVEVLKESGKP 171
Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
VAATMCIGPEGD+HGVTPG+CAV+LVKAGASI+GVNC F P SL+T++LMKEGLQAAGL
Sbjct: 172 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 231
Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 232 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 291
Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL ASG
Sbjct: 292 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351
Query: 1691 RPYNPSMSKPD 1723
RP+ PS+SKPD
Sbjct: 352 RPFCPSLSKPD 362
>ref|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like, partial
[Sus scrofa].
Length = 264
Score = 369 bits (946), Expect = e-102
Identities = 173/175 (98%), Positives = 173/175 (98%)
Frame = +2
Query: 1220 RLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 1399
RL K GASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID
Sbjct: 61 RLQKKGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 120
Query: 1400 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 1579
LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP
Sbjct: 121 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 180
Query: 1580 ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 1744
ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG
Sbjct: 181 ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 235
>ref|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like [Sus
scrofa].
Length = 205
Score = 366 bits (939), Expect = e-101
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +2
Query: 1232 AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 1411
AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF
Sbjct: 6 AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 65
Query: 1412 PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 1591
PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK
Sbjct: 66 PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 125
Query: 1592 HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 1744
HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG
Sbjct: 126 HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,542,302
Number of extensions: 1540209
Number of successful extensions: 5846
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5822
Number of HSP's successfully gapped: 4
Length of query: 592
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 487
Effective length of database: 8,729,747
Effective search space: 4251386789
Effective search space used: 4251386789
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007501
(1777 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1152 0.0
gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048 1144 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1152 bits (581), Expect = 0.0
Identities = 633/655 (96%), Gaps = 12/655 (1%)
Strand = Plus / Minus
Query: 2 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431635 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 89431576
Query: 62 gtttggatacataaccactggacgtataatcacagagg------------ctgaagttct 109
||| | || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 89431575 gttcgaatccataaccactggacgtataatcacagaggtcacactttaggctgaagttct 89431516
Query: 110 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431515 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 89431456
Query: 170 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431455 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 89431396
Query: 230 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431395 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 89431336
Query: 290 agagctgaaacccgagcagatggcaacctacttgnnnnnnncttcttaacttacttctgg 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 89431335 agagctgaaacccgagcagatggcaacctacttgtttttttcttcttaacttacttctgg 89431276
Query: 350 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431275 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 89431216
Query: 410 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431215 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 89431156
Query: 470 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431155 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 89431096
Query: 530 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431095 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 89431036
Query: 590 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431035 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 89430981
Score = 450 bits (227), Expect = e-123
Identities = 230/231 (99%)
Strand = Plus / Minus
Query: 1418 ggactggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctac 1477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89411035 ggactggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctac 89410976
Query: 1478 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410975 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 89410916
Query: 1538 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410915 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 89410856
Query: 1598 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410855 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 89410805
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 896 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417805 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 89417746
Query: 956 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417745 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 89417686
Query: 1016 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417685 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 89417626
Query: 1076 ttgattgcagag 1087
||||||||||||
Sbjct: 89417625 ttgattgcagag 89417614
Score = 375 bits (189), Expect = e-101
Identities = 219/229 (95%)
Strand = Plus / Minus
Query: 1420 actggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctacaa 1479
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 89464646 actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 89464587
Query: 1480 cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 1539
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89464586 cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 89464527
Query: 1540 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464526 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 89464467
Query: 1600 ctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
||||||||||| | | | |||||||||||||||||| |||||||||||
Sbjct: 89464466 ctggggaagtggtctcaatatgcacaccaagccctggattagagccagg 89464418
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 1232 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412858 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 89412799
Query: 1292 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412798 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 89412739
Query: 1352 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412738 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 89412679
Query: 1412 ccctttgg 1419
||||||||
Sbjct: 89412678 ccctttgg 89412671
Score = 299 bits (151), Expect = 3e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 1086 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89416744 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 89416685
Query: 1146 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89416684 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 89416625
Query: 1206 gccagtgtgcagtgcgtctggtaaaggcagg 1236
|||||||||||||||||||||||||||||||
Sbjct: 89416624 gccagtgtgcagtgcgtctggtaaaggcagg 89416594
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 642 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89426214 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 89426155
Query: 702 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89426154 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 89426095
Query: 762 aacacccagaagcag 776
|||||||||||||||
Sbjct: 89426094 aacacccagaagcag 89426080
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 774 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89419252 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 89419193
Query: 834 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89419192 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 89419133
Query: 894 ccg 896
|||
Sbjct: 89419132 ccg 89419130
Score = 224 bits (113), Expect = 1e-55
Identities = 129/133 (96%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 1646 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccgtacaaccct 1705
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89408033 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccatacaaccct 89407974
Query: 1706 tccatgtcaaagccggatgcctggggagtgaccaaagg-acagctgaactgatgcagcaa 1764
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 89407973 tccatgtcaaagccggatgcctggggagtgaccaaaggcacagctgagctgatgcagcag 89407914
Query: 1765 aaagaagctacta 1777
|||||||||||||
Sbjct: 89407913 aaagaagctacta 89407901
Score = 107 bits (54), Expect = 2e-20
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 1086 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 89466600 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 89466541
Query: 1146 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 1203
| || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 89466540 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 89466483
Score = 65.9 bits (33), Expect = 7e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 803 agagccggatcgaatgtcatgcagaccttcaccttctatgccagtgaggacaa 855
||||| |||||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 89469866 agagcgggatcgaatgtcatgcagactttcaccttttctgccaatgaggacaa 89469814
>gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048
Length = 105113
Score = 1144 bits (577), Expect = 0.0
Identities = 632/655 (96%), Gaps = 12/655 (1%)
Strand = Plus / Plus
Query: 2 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23027 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 23086
Query: 62 gtttggatacataaccactggacgtataatcacagagg------------ctgaagttct 109
||| | || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 23087 gttcgaatccataaccactggacgtataatcacagaggtcacactttaggctgaagttct 23146
Query: 110 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23147 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 23206
Query: 170 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23207 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 23266
Query: 230 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 289
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 23267 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagaggaggtgggcacaggt 23326
Query: 290 agagctgaaacccgagcagatggcaacctacttgnnnnnnncttcttaacttacttctgg 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 23327 agagctgaaacccgagcagatggcaacctacttgtttttttcttcttaacttacttctgg 23386
Query: 350 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23387 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 23446
Query: 410 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 23506
Query: 470 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23507 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 23566
Query: 530 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23567 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 23626
Query: 590 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23627 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 23681
Score = 450 bits (227), Expect = e-123
Identities = 230/231 (99%)
Strand = Plus / Plus
Query: 1418 ggactggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctac 1477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 40256 ggactggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctac 40315
Query: 1478 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40316 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 40375
Query: 1538 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40376 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 40435
Query: 1598 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40436 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 40486
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 896 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33686 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 33745
Query: 956 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33746 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 33805
Query: 1016 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33806 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 33865
Query: 1076 ttgattgcagag 1087
||||||||||||
Sbjct: 33866 ttgattgcagag 33877
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1232 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38490 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 38549
Query: 1292 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38550 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 38609
Query: 1352 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38610 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 38669
Query: 1412 ccctttgg 1419
||||||||
Sbjct: 38670 ccctttgg 38677
Score = 299 bits (151), Expect = 3e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1086 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34747 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 34806
Query: 1146 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34807 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 34866
Query: 1206 gccagtgtgcagtgcgtctggtaaaggcagg 1236
|||||||||||||||||||||||||||||||
Sbjct: 34867 gccagtgtgcagtgcgtctggtaaaggcagg 34897
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 642 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28194 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 28253
Query: 702 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28254 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 28313
Query: 762 aacacccagaagcag 776
|||||||||||||||
Sbjct: 28314 aacacccagaagcag 28328
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 774 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32316 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 32375
Query: 834 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32376 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 32435
Query: 894 ccg 896
|||
Sbjct: 32436 ccg 32438
Score = 224 bits (113), Expect = 1e-55
Identities = 129/133 (96%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 1646 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccgtacaaccct 1705
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 43053 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccatacaaccct 43112
Query: 1706 tccatgtcaaagccggatgcctggggagtgaccaaagg-acagctgaactgatgcagcaa 1764
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 43113 tccatgtcaaagccggatgcctggggagtgaccaaaggcacagctgagctgatgcagcag 43172
Query: 1765 aaagaagctacta 1777
|||||||||||||
Sbjct: 43173 aaagaagctacta 43185
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,876,624
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 21
Length of query: 1777
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1755
Effective length of database: 2,808,408,574
Effective search space: 4928757047370
Effective search space used: 4928757047370
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)