Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095592.1| translocon-associated protein subunit alpha ... 429 e-120
>ref|NP_001095592.1| translocon-associated protein subunit alpha precursor [Bos taurus].
Length = 286
Score = 429 bits (1103), Expect = e-120
Identities = 221/265 (83%), Positives = 222/265 (83%)
Frame = +2
Query: 167 RGGPGGSLAVAQDLXXXXXXXXXXXXXXXXXXXXXXXXXPTDLAEDKEEEDVSGEPEASP 346
R GPGGSLAVAQDL PTDLAEDKEE+DVSGEPEASP
Sbjct: 22 RVGPGGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEEDDVSGEPEASP 81
Query: 347 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 526
SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP
Sbjct: 82 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 141
Query: 527 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 706
LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED
Sbjct: 142 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 201
Query: 707 GLDGETIFMYMFXXXXXXXXXXXXXXXXESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 886
GLDGETIFMYMF ESRKRKRPIQKVE GTSSQNDVDMSWIPQETL
Sbjct: 202 GLDGETIFMYMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETL 261
Query: 887 NQINKASPRRLPRKRAQKRSVGSDE 961
NQINKASPRRLPRKRAQKRSVGSDE
Sbjct: 262 NQINKASPRRLPRKRAQKRSVGSDE 286
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,974,003
Number of extensions: 1133143
Number of successful extensions: 3719
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3713
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003270.1| translocon-associated protein subunit alpha ... 431 e-121
>ref|NP_001003270.1| translocon-associated protein subunit alpha precursor [Canis lupus
familiaris].
Length = 286
Score = 431 bits (1107), Expect = e-121
Identities = 221/265 (83%), Positives = 221/265 (83%)
Frame = +2
Query: 167 RGGPGGSLAVAQDLXXXXXXXXXXXXXXXXXXXXXXXXXPTDLAEDKEEEDVSGEPEASP 346
RGGPGGSL AQDL PTDLAEDKEEEDVSGEPEASP
Sbjct: 22 RGGPGGSLVAAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEEEDVSGEPEASP 81
Query: 347 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 526
SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP
Sbjct: 82 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 141
Query: 527 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 706
LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED
Sbjct: 142 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 201
Query: 707 GLDGETIFMYMFXXXXXXXXXXXXXXXXESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 886
GLDGETIFMYMF ESRKRKRPIQKVE GTSSQNDVDMSWIPQETL
Sbjct: 202 GLDGETIFMYMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETL 261
Query: 887 NQINKASPRRLPRKRAQKRSVGSDE 961
NQINKASPRRLPRKRAQKRSVGSDE
Sbjct: 262 NQINKASPRRLPRKRAQKRSVGSDE 286
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,927,903
Number of extensions: 1167216
Number of successful extensions: 4193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4186
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003135.2| translocon-associated protein subunit alpha pre... 426 e-119
>ref|NP_003135.2| translocon-associated protein subunit alpha precursor [Homo
sapiens].
Length = 286
Score = 426 bits (1096), Expect = e-119
Identities = 219/265 (82%), Positives = 220/265 (83%)
Frame = +2
Query: 167 RGGPGGSLAVAQDLXXXXXXXXXXXXXXXXXXXXXXXXXPTDLAEDKEEEDVSGEPEASP 346
RGGP G LAVAQDL PTDL EDKEEEDVSGEPEASP
Sbjct: 22 RGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLVEDKEEEDVSGEPEASP 81
Query: 347 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 526
SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP
Sbjct: 82 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 141
Query: 527 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 706
LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVT+IERED
Sbjct: 142 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIERED 201
Query: 707 GLDGETIFMYMFXXXXXXXXXXXXXXXXESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 886
GLDGETIFMYMF ESRKRKRPIQKVE GTSSQNDVDMSWIPQETL
Sbjct: 202 GLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETL 261
Query: 887 NQINKASPRRLPRKRAQKRSVGSDE 961
NQINKASPRRLPRKRAQKRSVGSDE
Sbjct: 262 NQINKASPRRLPRKRAQKRSVGSDE 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,034,986
Number of extensions: 1149808
Number of successful extensions: 3710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3702
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080241.3| translocon-associated protein subunit alpha pre... 425 e-119
>ref|NP_080241.3| translocon-associated protein subunit alpha precursor [Mus
musculus].
Length = 286
Score = 425 bits (1092), Expect = e-119
Identities = 218/265 (82%), Positives = 220/265 (83%)
Frame = +2
Query: 167 RGGPGGSLAVAQDLXXXXXXXXXXXXXXXXXXXXXXXXXPTDLAEDKEEEDVSGEPEASP 346
RGGPGGSLA+AQD PTDLAEDKEEEDVS EPEASP
Sbjct: 22 RGGPGGSLALAQDPTEDEEIVEDSIIEDEDDEAEVEEDEPTDLAEDKEEEDVSSEPEASP 81
Query: 347 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 526
SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP
Sbjct: 82 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 141
Query: 527 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 706
LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVT+IERED
Sbjct: 142 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIERED 201
Query: 707 GLDGETIFMYMFXXXXXXXXXXXXXXXXESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 886
GLDGETIFMYMF ESRKRKRPIQKVE GTSSQNDVDMSWIPQETL
Sbjct: 202 GLDGETIFMYMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETL 261
Query: 887 NQINKASPRRLPRKRAQKRSVGSDE 961
NQINKASPRR PRKRAQKRSVGSDE
Sbjct: 262 NQINKASPRRQPRKRAQKRSVGSDE 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,324,663
Number of extensions: 967132
Number of successful extensions: 2959
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2953
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172096.1| signal sequence receptor, alpha [Sus scrofa]. 436 e-122
>ref|NP_001172096.1| signal sequence receptor, alpha [Sus scrofa].
Length = 286
Score = 436 bits (1121), Expect = e-122
Identities = 224/265 (84%), Positives = 224/265 (84%)
Frame = +2
Query: 167 RGGPGGSLAVAQDLXXXXXXXXXXXXXXXXXXXXXXXXXPTDLAEDKEEEDVSGEPEASP 346
RGGPGGSLAVAQDL PTDLAEDKEEEDVSGEPEASP
Sbjct: 22 RGGPGGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEEEDVSGEPEASP 81
Query: 347 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 526
SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP
Sbjct: 82 SADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALP 141
Query: 527 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 706
LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED
Sbjct: 142 LNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIERED 201
Query: 707 GLDGETIFMYMFXXXXXXXXXXXXXXXXESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 886
GLDGETIFMYMF ESRKRKRPIQKVETGTSSQNDVDMSWIPQETL
Sbjct: 202 GLDGETIFMYMFLAGLGLLLVVGLHQLLESRKRKRPIQKVETGTSSQNDVDMSWIPQETL 261
Query: 887 NQINKASPRRLPRKRAQKRSVGSDE 961
NQINKASPRRLPRKRAQKRSVGSDE
Sbjct: 262 NQINKASPRRLPRKRAQKRSVGSDE 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,671,758
Number of extensions: 724119
Number of successful extensions: 2424
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2420
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007506
(1202 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 519 e-144
>Sscrofa_Chr07
|| Length = 134764511
Score = 519 bits (262), Expect = e-144
Identities = 265/266 (99%)
Strand = Plus / Minus
Query: 382 agactttccggcaaataacattgtcaagttcctggtgggcttcacgaacaagggtacaga 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689668 agactttccggcaaataacattgtcaagttcctggtgggcttcacgaacaagggtacaga 4689609
Query: 442 agacttcatcgttgaatccctggacgcctccttccgttatcctcaagactaccagtttta 501
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689608 agacttcatcgttgaatctctggacgcctccttccgttatcctcaagactaccagtttta 4689549
Query: 502 catccagaacttcacggcgcttcccctgaacactgtcgtgccgccgcagagacaggccac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689548 catccagaacttcacggcgcttcccctgaacactgtcgtgccgccgcagagacaggccac 4689489
Query: 562 ctttgagtactccttcatccctgcggagcccatgggcggccggccctttggtctggtcat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689488 ctttgagtactccttcatccctgcggagcccatgggcggccggccctttggtctggtcat 4689429
Query: 622 caatctcaactacaaagacctgaacg 647
||||||||||||||||||||||||||
Sbjct: 4689428 caatctcaactacaaagacctgaacg 4689403
Score = 442 bits (223), Expect = e-121
Identities = 257/263 (97%), Gaps = 4/263 (1%)
Strand = Plus / Minus
Query: 897 ataaagcttcaccgagaaggttgcccaggaaacgggcacagaagagatccgtgggatctg 956
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4677942 ataaagcttcaccgagaaggt-gcccaggaaacgggcacagaagagatccgtgggatctg 4677884
Query: 957 atgagtaaatgttctttgtgcaacaatttggtctttacttaacctgccctaatgtgtttc 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4677883 atgagtaaatgttctttgtgcaacaatttggtctttacttaacctgccctaatgtgtttc 4677824
Query: 1017 ggcctgatgggaattagtgcagagaagccatatcaccataaacggcaactgctgcttatg 1076
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4677823 ggcctgatgggaattagtgcagagaagccatatcaccatagacggcaactgctgcttatg 4677764
Query: 1077 tgtggactgagc-atcagagtctgtggcgataatattgtggaaaa-gcactgcattttta 1134
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4677763 tgtggactgagcaatcagagtctgtggcgataatattgtggaaaatgcactgcattttta 4677704
Query: 1135 -ttttccaaagtaacaaatgtgg 1156
||||| ||||||||||||||||
Sbjct: 4677703 tttttctaaagtaacaaatgtgg 4677681
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 3 gccccgcccccgccaggagcccggatgaagagtaacgccattaccgccggggcggccgag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698116 gccccgcccccgccaggagcccggatgaagagtaacgccattaccgccggggcggccgag 4698057
Query: 63 cgcactcgcggaaggagcctggacgccggaccggccgcgccatgaggtccctcccccgcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698056 cgcactcgcggaaggagcctggacgccggaccggccgcgccatgaggtccctcccccgcc 4697997
Query: 123 tgctgctgcttctcctgctcgtattccccgccaccctcctgctccgaggcggccccggag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697996 tgctgctgcttctcctgctcgtattccccgccaccctcctgctccgaggcggccccggag 4697937
Query: 183 g 183
|
Sbjct: 4697936 g 4697936
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 3 gccccgcccccgccaggagcccggatgaagagtaacgccattaccgccggggcggccgag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781224 gccccgcccccgccaggagcccggatgaagagtaacgccattaccgccggggcggccgag 4781283
Query: 63 cgcactcgcggaaggagcctggacgccggaccggccgcgccatgaggtccctcccccgcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781284 cgcactcgcggaaggagcctggacgccggaccggccgcgccatgaggtccctcccccgcc 4781343
Query: 123 tgctgctgcttctcctgctcgtattccccgccaccctcctgctccgaggcggccccggag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781344 tgctgctgcttctcctgctcgtattccccgccaccctcctgctccgaggcggccccggag 4781403
Query: 183 g 183
|
Sbjct: 4781404 g 4781404
Score = 222 bits (112), Expect = 3e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 181 aggctccttagcagtggctcaagaccttacagaagatgaagaaacagtggaagattctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4695423 aggctccttagcagtggctcaagaccttacagaagatgaagaaacagtggaagattctat 4695364
Query: 241 cattgaagatgaagatgatgaagcagaggtggaagaggatgaacccacagacttgg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4695363 aattgaagatgaagatgatgaagcagaggtggaagaggatgaacccacagacttgg 4695308
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 801 agcgcaagaggcccatccagaaggtggagacaggcacgtccagtcagaatgatgtcgaca 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4684464 agcgcaagaggcccatccagaaggtggagacaggcacgtccagtcagaatgatgtcgaca 4684405
Query: 861 tgagttggattcctcaggaaactttgaatcagatca 896
||||||||||||||||||||||||||||||||||||
Sbjct: 4684404 tgagttggattcctcaggaaactttgaatcagatca 4684369
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 295 ggctgaagataaagaggaagaagatgtatctggtgaacctgaagcttcacccagtgcaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4691298 ggctgaagataaagaggaagaagatgtatctggtgaacctgaagcttcacccagtgcaga 4691239
Query: 355 taccaccatcctgtttgtgaagggagaag 383
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Sbjct: 4691238 taccaccatcctgtttgtgaagggagaag 4691210
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 724 aatcttcatgtatatgttccttgctggtctcgggctcttgcttgttgttggcctccatca 783
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Sbjct: 4685984 aatcttcatgtatatgttccttgctggtctcgggctcttgcttgttgttggcctccatca 4685925
Query: 784 actcctagaatccaggaag 802
|||||||||||||||||||
Sbjct: 4685924 actcctagaatccaggaag 4685906
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 647 ggcaatgttttccaagatgctgtcttcaatcaaacagttacaattatcgagagagaggat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687299 ggcaatgttttccaagatgctgtcttcaatcaaacagttacaattatcgagagagaggat 4687240
Query: 707 gggttagatggagaaac 723
|||||||||||||||||
Sbjct: 4687239 gggttagatggagaaac 4687223
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,674,459
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 9
Length of query: 1202
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1181
Effective length of database: 2,808,413,156
Effective search space: 3316735937236
Effective search space used: 3316735937236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)