Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070488.1| FAS-associated factor 2 [Bos taurus]. 619 e-177
Alignment gi|NP_001039783.1| FAS-associated factor 1 [Bos taurus]. 82 1e-15
>ref|NP_001070488.1| FAS-associated factor 2 [Bos taurus].
Length = 445
Score = 619 bits (1596), Expect = e-177
Identities = 303/305 (99%), Positives = 304/305 (99%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 60
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 61 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 120
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPR+RVTDPVGDIVSFMHSFEEKYGRAHPVFY GTYSQALNDAKRELRFLLVYLHGD
Sbjct: 121 IRPDPRNRVTDPVGDIVSFMHSFEEKYGRAHPVFYLGTYSQALNDAKRELRFLLVYLHGD 180
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 181 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 240
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 241 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 300
Query: 955 LRADQ 969
LRADQ
Sbjct: 301 LRADQ 305
>ref|NP_001039783.1| FAS-associated factor 1 [Bos taurus].
Length = 650
Score = 81.6 bits (200), Expect = 1e-15
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
++F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 308 EVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 367
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA-------------CS 690
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA
Sbjct: 368 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDANRARFLTM 427
Query: 691 TNKPEGYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
N+ G V+Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 428 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 487
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 488 TAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 523
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,176,459
Number of extensions: 977468
Number of successful extensions: 3061
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546218.2| PREDICTED: similar to protein expressed in T-ce... 623 e-178
Alignment gi|XP_866039.1| PREDICTED: similar to protein expressed in T-ce... 510 e-145
Alignment gi|XP_866010.1| PREDICTED: similar to protein expressed in T-ce... 96 2e-20
Alignment gi|XP_849822.1| PREDICTED: similar to FAS-associated factor 1 (... 83 4e-16
Alignment gi|XP_859779.1| PREDICTED: similar to FAS-associated factor 1 (... 83 4e-16
Alignment gi|XP_859843.1| PREDICTED: similar to FAS-associated factor 1 i... 81 1e-15
>ref|XP_546218.2| PREDICTED: similar to protein expressed in T-cells and eosinophils
in atopic dermatitis isoform 1 [Canis familiaris].
Length = 445
Score = 623 bits (1606), Expect = e-178
Identities = 305/305 (100%), Positives = 305/305 (100%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 60
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 61 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 120
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
Sbjct: 121 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 180
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 181 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 240
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 241 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 300
Query: 955 LRADQ 969
LRADQ
Sbjct: 301 LRADQ 305
>ref|XP_866039.1| PREDICTED: similar to protein expressed in T-cells and eosinophils
in atopic dermatitis isoform 3 [Canis familiaris].
Length = 400
Score = 510 bits (1313), Expect = e-145
Identities = 260/305 (85%), Positives = 260/305 (85%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIE
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIE---------------- 44
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
GLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 45 -----------------------------GLLGWGYYLIMLPFRFTYYTILDIFRFALRF 75
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
Sbjct: 76 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 135
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 136 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 195
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 196 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 255
Query: 955 LRADQ 969
LRADQ
Sbjct: 256 LRADQ 260
>ref|XP_866010.1| PREDICTED: similar to protein expressed in T-cells and eosinophils
in atopic dermatitis isoform 2 [Canis familiaris].
Length = 53
Score = 96.3 bits (238), Expect(2) = 2e-20
Identities = 45/49 (91%), Positives = 45/49 (91%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 201
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIE D
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEVGCLD 49
Score = 21.6 bits (44), Expect(2) = 2e-20
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 323 GCLDGVIT 346
GCLDGVIT
Sbjct: 46 GCLDGVIT 53
>ref|XP_849822.1| PREDICTED: similar to FAS-associated factor 1 (FAF1 protein)
(hFAF1) isoform 2 [Canis familiaris].
Length = 649
Score = 83.2 bits (204), Expect = 4e-16
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
D+F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 307 DVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 366
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA-------------CS 690
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA
Sbjct: 367 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDTNRARFLTM 426
Query: 691 TNKPEGYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
N+ G V+Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 427 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 486
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 487 TAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 522
>ref|XP_859779.1| PREDICTED: similar to FAS-associated factor 1 (FAF1 protein) (hFAF1)
isoform 3 [Canis familiaris].
Length = 683
Score = 83.2 bits (204), Expect = 4e-16
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
D+F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 361 DVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 420
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA-------------CS 690
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA
Sbjct: 421 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDTNRARFLTM 480
Query: 691 TNKPEGYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
N+ G V+Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 481 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 540
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 541 TAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 576
>ref|XP_859843.1| PREDICTED: similar to FAS-associated factor 1 isoform b isoform 4
[Canis familiaris].
Length = 499
Score = 81.3 bits (199), Expect = 1e-15
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 20/185 (10%)
Frame = +1
Query: 475 HSFEEKYGRAHPVFYQGTYSQALNDA----KRELRFLLVYLHGDDHQDSDEFCRNTLCAP 642
H+F +YG HPVF+ G+ A +A R+ + L +YLH D+ ++ FC LCA
Sbjct: 188 HNFSYRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAE 247
Query: 643 EVISLINTRMLFWA-------------CSTNKPEGYRVSQALR---ENTYPFLAMIMLKD 774
++S ++ + WA N+ G V+Q +R + +P +IM K
Sbjct: 248 SIVSYLSQNFITWAWDLTKDTNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKR 307
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
V+ ++G D+L+ +L M+ + + +ER + ++++QDEAY S
Sbjct: 308 SSNEVLNVIQGNTTVDELMMRLMAAMEIFTAQQQEDIKDEDEREARENVKREQDEAYRLS 367
Query: 955 LRADQ 969
L AD+
Sbjct: 368 LEADR 372
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,802,843
Number of extensions: 1012244
Number of successful extensions: 3267
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3257
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055428.1| FAS-associated factor 2 [Homo sapiens]. 623 e-179
Alignment gi|NP_008982.1| FAS-associated factor 1 [Homo sapiens]. 82 8e-16
>ref|NP_055428.1| FAS-associated factor 2 [Homo sapiens].
Length = 445
Score = 623 bits (1606), Expect = e-179
Identities = 305/305 (100%), Positives = 305/305 (100%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 60
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 61 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 120
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
Sbjct: 121 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 180
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 181 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 240
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 241 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 300
Query: 955 LRADQ 969
LRADQ
Sbjct: 301 LRADQ 305
>ref|NP_008982.1| FAS-associated factor 1 [Homo sapiens].
Length = 650
Score = 82.0 bits (201), Expect = 8e-16
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
++F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 308 EVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 367
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPE-------- 705
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA K
Sbjct: 368 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTM 427
Query: 706 -----GYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
G V+Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 428 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 487
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 488 TAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 523
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,090,917
Number of extensions: 995895
Number of successful extensions: 3140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3132
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848484.2| FAS-associated factor 2 [Mus musculus]. 608 e-174
Alignment gi|NP_032009.2| FAS-associated factor 1 [Mus musculus]. 82 9e-16
>ref|NP_848484.2| FAS-associated factor 2 [Mus musculus].
Length = 445
Score = 608 bits (1567), Expect = e-174
Identities = 297/305 (97%), Positives = 302/305 (99%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEE+DLTQEQTEKLLQFQDLTGIESM+QCR LEQHNWN+EAAVQDRLNEQEGVPSV
Sbjct: 1 MAAPEEQDLTQEQTEKLLQFQDLTGIESMEQCRLALEQHNWNMEAAVQDRLNEQEGVPSV 60
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
FNPPP+RPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 61 FNPPPARPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 120
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
Sbjct: 121 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 180
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRN LCAPEVISLIN+RMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 181 DHQDSDEFCRNALCAPEVISLINSRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 240
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 241 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 300
Query: 955 LRADQ 969
LRADQ
Sbjct: 301 LRADQ 305
>ref|NP_032009.2| FAS-associated factor 1 [Mus musculus].
Length = 649
Score = 81.6 bits (200), Expect = 9e-16
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
++F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 307 EVFGMASSTLRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 366
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA-------------CS 690
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA
Sbjct: 367 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDTNRARFLTM 426
Query: 691 TNKPEGYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
N+ G ++Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 427 CNRHFGSVIAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 486
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 487 SAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 522
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,387,494
Number of extensions: 842271
Number of successful extensions: 2748
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2745
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123708.1| PREDICTED: FAS-associated factor 2 [Sus scro... 623 e-179
Alignment gi|XP_003128045.1| PREDICTED: FAS-associated factor 1 [Sus scro... 82 6e-16
>ref|XP_003123708.1| PREDICTED: FAS-associated factor 2 [Sus scrofa].
Length = 445
Score = 623 bits (1606), Expect = e-179
Identities = 305/305 (100%), Positives = 305/305 (100%)
Frame = +1
Query: 55 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 234
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
Sbjct: 1 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV 60
Query: 235 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 414
FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
Sbjct: 61 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF 120
Query: 415 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 594
IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
Sbjct: 121 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD 180
Query: 595 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 774
DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
Sbjct: 181 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD 240
Query: 775 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 954
RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
Sbjct: 241 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS 300
Query: 955 LRADQ 969
LRADQ
Sbjct: 301 LRADQ 305
>ref|XP_003128045.1| PREDICTED: FAS-associated factor 1 [Sus scrofa].
Length = 639
Score = 81.6 bits (200), Expect = 6e-16
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Frame = +1
Query: 388 DIFRFALRFIRPDPRS-RVTDPVGD-IVSFMHSFEEKYGRAHPVFYQGTYSQALNDA--- 552
++F A +R P + GD ++ F F +YG HPVF+ G+ A +A
Sbjct: 297 EVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYV 356
Query: 553 -KRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA-------------CS 690
R+ + L +YLH D+ ++ FC LCA ++S ++ + WA
Sbjct: 357 KARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDANRARFLTM 416
Query: 691 TNKPEGYRVSQALR---ENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 861
N+ G V+Q +R + +P +IM K V+ ++G D+L+ +L M+
Sbjct: 417 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIF 476
Query: 862 QTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQ 969
+ + +ER + ++++QDEAY SL AD+
Sbjct: 477 TAQQQEDIKDEDEREARENVKREQDEAYRLSLEADR 512
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,919,308
Number of extensions: 626280
Number of successful extensions: 1996
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1993
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007509
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 357 8e-96
>Sscrofa_Chr02
|| Length = 162569375
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 715 gtctcacaggctttacgagaaaacacctatccattcctggccatgattatgctgaaggat 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83017649 gtctcacaggctttacgagaaaacacctatccattcctggccatgattatgctgaaggat 83017590
Query: 775 cggaggatgactgtggtaggacggctagaaggccttatccagcctgatgacctcattaac 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83017589 cggaggatgactgtggtaggacggctagaaggccttatccagcctgatgacctcattaac 83017530
Query: 835 cagctgacatttatcatggatgcaaaccagacttacctagtgtcagaacgtctagaaagg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83017529 cagctgacatttatcatggatgcaaaccagacttacctagtgtcagaacgtctagaaagg 83017470
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 397 aggtttgctcttcgttttatacgacctgaccctcgcagccgggtcactgaccctgttggg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83022410 aggtttgctcttcgttttatacgacctgaccctcgcagccgggtcactgaccctgttggg 83022351
Query: 457 gacattgtttcatttatgcactcttttgaagagaaatatgggagggcacaccctgtcttc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83022350 gacattgtttcatttatgcactcttttgaagagaaatatgggagggcacaccctgtcttc 83022291
Query: 517 taccagggaacgtacagccagg 538
||||||||||||||||||||||
Sbjct: 83022290 taccagggaacgtacagccagg 83022269
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 185 aggctgctgtacaagatagactgaatgagcaagagggtgtaccaagtgttttcaacccac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026863 aggctgctgtacaagatagactgaatgagcaagagggtgtaccaagtgttttcaacccac 83026804
Query: 245 caccatcccgacccctgcaggttaatacagctgaccacaggatctacagctatgttgtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026803 caccatcccgacccctgcaggttaatacagctgaccacaggatctacagctatgttgtct 83026744
Query: 305 caagaccacagccaaggg 322
||||||||||||||||||
Sbjct: 83026743 caagaccacagccaaggg 83026726
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1 cacttccggcgggtgacggtgcggacgggtcagaagcgtagaggcggcggcaaaatggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83055924 cacttccggcgggtgacggtgcggacgggtcagaagcgtagaggcggcggcaaaatggcg 83055865
Query: 61 gcgcctgaggagcgggatctaacccaggagcagaccgagaagctgctgcagtttcagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83055864 gcgcctgaggagcgggatctaacccaggagcagaccgagaagctgctgcagtttcagg 83055807
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 623 gcaacacactatgtgcacctgaagttatttcactaataaacacgagaatgctcttctggg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83020382 gcaacacactatgtgcacctgaagttatttcactaataaacacgagaatgctcttctggg 83020323
Query: 683 catgctccacaaacaaacctgagggatacaggg 715
|||||||||||||||||||||||||||||||||
Sbjct: 83020322 catgctccacaaacaaacctgagggatacaggg 83020290
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 535 caggcacttaatgatgccaaacgggaactccgctttcttttggtttatcttcatggagat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83020565 caggcacttaatgatgccaaacgggaactccgctttcttttggtttatcttcatggagat 83020506
Query: 595 gatcaccaggactctgatgagttctgtcg 623
|||||||||||||||||||||||||||||
Sbjct: 83020505 gatcaccaggactctgatgagttctgtcg 83020477
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 892 agggaagaacggaaccagacccaggtgctgagacagcaacaggatgaggcatacttggca 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83015961 agggaagaacggaaccagacccaggtgctgagacagcaacaggatgaggcatacttggca 83015902
Query: 952 tctctcagggctgaccaggag 972
|||||||||||||||||||||
Sbjct: 83015901 tctctcagggctgaccaggag 83015881
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 321 ggggctgcttggatggggttattacttgataatgcttccattccggtttacctattatac 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83024984 ggggctgcttggatggggttattacttgataatgcttccattccggtttacctattatac 83024925
Query: 381 aatacttgatatatttaggt 400
||||||||||||||||||||
Sbjct: 83024924 aatacttgatatatttaggt 83024905
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 112 tttcaggatctgactggcatagaatctatggatcagtgtcgccataccttggaacagcat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83033645 tttcaggatctgactggcatagaatctatggatcagtgtcgccataccttggaacagcat 83033586
Query: 172 aactggaacatagagg 187
||||||||||||||||
Sbjct: 83033585 aactggaacatagagg 83033570
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,868,995
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 9
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)