Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178211.1| protein Niban [Bos taurus]. 1252 0.0
Alignment gi|XP_002694293.1| PREDICTED: family with sequence similarity 1... 1252 0.0
Alignment gi|XP_002691672.1| PREDICTED: niban protein-like [Bos taurus]. 443 e-124
Alignment gi|XP_869626.3| PREDICTED: niban protein isoform 1 [Bos taurus]. 443 e-124
Alignment gi|NP_001179291.1| filamin-A-interacting protein 1 [Bos taurus]. 53 2e-06
Alignment gi|XP_002690075.1| PREDICTED: filamin A interacting protein 1 [... 53 2e-06
>ref|NP_001178211.1| protein Niban [Bos taurus].
Length = 933
Score = 1252 bits (3240), Expect = 0.0
Identities = 642/801 (80%), Positives = 687/801 (85%), Gaps = 1/801 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASSQLDE KC YIRGKTEA IKNFSPYYSRQYSVAFCNHVRSEVEQQRD TSQFLK
Sbjct: 1 MGGSASSQLDESKCTYIRGKTEAAIKNFSPYYSRQYSVAFCNHVRSEVEQQRDLTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKP LEPGT+LYE EL QFAEDIKKWKERYVVVKNDFAVESYEN+EAYQKGAPPK RILP
Sbjct: 61 TKPLLEPGTVLYEGELLQFAEDIKKWKERYVVVKNDFAVESYENREAYQKGAPPKSRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTSEDEYNLLSDRHFPDPIA++EKEN QPFV LPKEFPVYLWQPFLRH YFCFQ+
Sbjct: 121 AGGKVLTSEDEYNLLSDRHFPDPIASNEKENMQPFVVLPKEFPVYLWQPFLRHGYFCFQD 180
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AA+QKKFSALL+DCIRHLNHDY KQ TFEAQAFLEAVQFFRQEKGHYGSWEM TGDE+QI
Sbjct: 181 AADQKKFSALLSDCIRHLNHDYMKQTTFEAQAFLEAVQFFRQEKGHYGSWEMVTGDEVQI 240
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL+PTLQTD+LPKM+GKKNDRKRAWFGLLEEAY+LVQH+VSEGLSALKEECRA
Sbjct: 241 LSNLVMEELMPTLQTDILPKMKGKKNDRKRAWFGLLEEAYHLVQHRVSEGLSALKEECRA 300
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTK LEGTIRSDMDQIV SKNFLIGKIKAMVAQPAE SCAESVQPFL SILEELMGPVSS
Sbjct: 301 LTKGLEGTIRSDMDQIVNSKNFLIGKIKAMVAQPAERSCAESVQPFLGSILEELMGPVSS 360
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSE+RSLFEKEVDELSQ+FQTTKD A+LKE L+QLM+LPLDSVKMEPCY+KVNLLQEHL
Sbjct: 361 GFSELRSLFEKEVDELSQSFQTTKDSAQLKEHLEQLMDLPLDSVKMEPCYNKVNLLQEHL 420
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
QDLKSRFRFPHIDLV+QRTQNYMQELMENA+FTFEQLLSPHLQGEASKTTVAIEKVKLRV
Sbjct: 421 QDLKSRFRFPHIDLVVQRTQNYMQELMENAIFTFEQLLSPHLQGEASKTTVAIEKVKLRV 480
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRKRIFQEALVQITLPT+QKALAS+CKPELQKYEQ+IFADHT+MIHVENV
Sbjct: 481 LKQYDYDSSTIRKRIFQEALVQITLPTLQKALASVCKPELQKYEQYIFADHTNMIHVENV 540
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEILHQILLDE+LKVIKEAA+LKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR
Sbjct: 541 YEEILHQILLDESLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 600
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
ASA+LPG +SEI+SNEVFQ LA+ E GD Q+I SS+
Sbjct: 601 ASAVLPGVSESEILSNEVFQEAGEMKQPEVPSPLAREEGLSLPVSSPPPDGDRQVIDSSI 660
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
D P VNLVA E TAG LGTH S SA+GSLKELR+LLTVT
Sbjct: 661 DGPVVNLVATEVTAGALGTHLSQPELEETPEDREPTQEDAEPRSAAGSLKELRNLLTVTA 720
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENKXXXXXXX 2510
EV ES L++E+DT+EE LVPQ +EKEEE T + T A A+AS QDNC E++
Sbjct: 721 EVTGESAVLEVEKDTHEEALVPQDIEKEEEATQIDTEASQASASGQDNCEESEVGEGEAH 780
Query: 2511 XXXXXXXGE-AXLGALPEAQP 2570
LG P+AQP
Sbjct: 781 GPTPKAEASGVELGEFPDAQP 801
>ref|XP_002694293.1| PREDICTED: family with sequence similarity 129, member A [Bos
taurus].
Length = 933
Score = 1252 bits (3240), Expect = 0.0
Identities = 642/801 (80%), Positives = 687/801 (85%), Gaps = 1/801 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASSQLDE KC YIRGKTEA IKNFSPYYSRQYSVAFCNHVRSEVEQQRD TSQFLK
Sbjct: 1 MGGSASSQLDESKCTYIRGKTEAAIKNFSPYYSRQYSVAFCNHVRSEVEQQRDLTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKP LEPGT+LYE EL QFAEDIKKWKERYVVVKNDFAVESYEN+EAYQKGAPPK RILP
Sbjct: 61 TKPLLEPGTVLYEGELLQFAEDIKKWKERYVVVKNDFAVESYENREAYQKGAPPKSRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTSEDEYNLLSDRHFPDPIA++EKEN QPFV LPKEFPVYLWQPFLRH YFCFQ+
Sbjct: 121 AGGKVLTSEDEYNLLSDRHFPDPIASNEKENMQPFVVLPKEFPVYLWQPFLRHGYFCFQD 180
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AA+QKKFSALL+DCIRHLNHDY KQ TFEAQAFLEAVQFFRQEKGHYGSWEM TGDE+QI
Sbjct: 181 AADQKKFSALLSDCIRHLNHDYMKQTTFEAQAFLEAVQFFRQEKGHYGSWEMVTGDEVQI 240
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL+PTLQTD+LPKM+GKKNDRKRAWFGLLEEAY+LVQH+VSEGLSALKEECRA
Sbjct: 241 LSNLVMEELMPTLQTDILPKMKGKKNDRKRAWFGLLEEAYHLVQHRVSEGLSALKEECRA 300
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTK LEGTIRSDMDQIV SKNFLIGKIKAMVAQPAE SCAESVQPFL SILEELMGPVSS
Sbjct: 301 LTKGLEGTIRSDMDQIVNSKNFLIGKIKAMVAQPAERSCAESVQPFLGSILEELMGPVSS 360
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSE+RSLFEKEVDELSQ+FQTTKD A+LKE L+QLM+LPLDSVKMEPCY+KVNLLQEHL
Sbjct: 361 GFSELRSLFEKEVDELSQSFQTTKDSAQLKEHLEQLMDLPLDSVKMEPCYNKVNLLQEHL 420
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
QDLKSRFRFPHIDLV+QRTQNYMQELMENA+FTFEQLLSPHLQGEASKTTVAIEKVKLRV
Sbjct: 421 QDLKSRFRFPHIDLVVQRTQNYMQELMENAIFTFEQLLSPHLQGEASKTTVAIEKVKLRV 480
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRKRIFQEALVQITLPT+QKALAS+CKPELQKYEQ+IFADHT+MIHVENV
Sbjct: 481 LKQYDYDSSTIRKRIFQEALVQITLPTLQKALASVCKPELQKYEQYIFADHTNMIHVENV 540
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEILHQILLDE+LKVIKEAA+LKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR
Sbjct: 541 YEEILHQILLDESLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 600
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
ASA+LPG +SEI+SNEVFQ LA+ E GD Q+I SS+
Sbjct: 601 ASAVLPGVSESEILSNEVFQEAGEMKQPEVPSPLAREEGLSLPVSSPPPDGDRQVIDSSI 660
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
D P VNLVA E TAG LGTH S SA+GSLKELR+LLTVT
Sbjct: 661 DGPVVNLVATEVTAGALGTHLSQPELEETPEDREPTQEDAEPRSAAGSLKELRNLLTVTA 720
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENKXXXXXXX 2510
EV ES L++E+DT+EE LVPQ +EKEEE T + T A A+AS QDNC E++
Sbjct: 721 EVTGESAVLEVEKDTHEEALVPQDIEKEEEATQIDTEASQASASGQDNCEESEVGEGEAH 780
Query: 2511 XXXXXXXGE-AXLGALPEAQP 2570
LG P+AQP
Sbjct: 781 GPTPKAEASGVELGEFPDAQP 801
>ref|XP_002691672.1| PREDICTED: niban protein-like [Bos taurus].
Length = 745
Score = 443 bits (1140), Expect = e-124
Identities = 236/577 (40%), Positives = 347/577 (60%), Gaps = 2/577 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S+ LD+ + +I KT ++ F +Y QY VA N +R E+E +Q L
Sbjct: 1 MGDVLSTHLDDARRQHIAEKTGKILTEFLRFYEDQYGVALFNSMRHEIEGTGLPQAQLLW 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
K PLE I++ L Q+ ED KKW+ R+ +V +++ + YENK AY++ PP+ I
Sbjct: 61 RKVPLEE-RIIFSGNLFQYQEDNKKWRNRFSLVPHNYGLVLYENKVAYERQIPPRAVINS 119
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG K+LTS D+Y L P T+ K + P + P +FP+ LW P RH YFC
Sbjct: 120 AGYKILTSLDQYLELVGNSLP---GTTPKSGSAPILKCPTQFPLILWHPSARHYYFCMMT 176
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AEQ K+ A+L DC+RH N+ + E AF +A++ +RQ K YG+WEM G+E+QI
Sbjct: 177 EAEQDKWQAVLQDCVRHCNNGIPEDSKVEGPAFTDAIRMYRQSKELYGTWEMLCGNEVQI 236
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL P L+ +L+P+++GK +R+R W + + Y +V Q A+ + +
Sbjct: 237 LSNLVMEELGPELKAELIPRLKGKPQERQRQWIQISDAVYRMVYEQAKARFEAVLSKLQL 296
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
+E IR+DMDQI+TSK L KI+A + AE VQP++ SILE LM P S
Sbjct: 297 ARPAMEAVIRTDMDQIITSKEHLASKIRASILPKAEVCVRNHVQPYIPSILEALMVPTSQ 356
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GF+EVR +F KEV +++ N +L E +++L L +KM CY+K+ L+ L
Sbjct: 357 GFTEVRDVFFKEVTDMNLNVINEGGIDKLGEYMEKLSQLAYHPLKMHSCYEKMEPLR--L 414
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKL 1604
L+ RF + + QR Q +M+E M+NAV+TFE LL L +K + +I+++
Sbjct: 415 DGLQQRFDVSSMSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRILE 474
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
RVLK+YDYDSST+RKR F+EAL+QIT+P + K LA CK EL ++++ IF D I VE
Sbjct: 475 RVLKKYDYDSSTVRKRFFREALLQITIPFLLKKLAPTCKSELSRFQELIFEDFARFILVE 534
Query: 1785 NVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 1895
N YEE++ Q ++ + L+ +KEAAV +KHNL+ D++ +
Sbjct: 535 NTYEEVVLQTVMKDILQAVKEAAVQRKHNLYRDSVVM 571
>ref|XP_869626.3| PREDICTED: niban protein isoform 1 [Bos taurus].
Length = 745
Score = 443 bits (1140), Expect = e-124
Identities = 236/577 (40%), Positives = 347/577 (60%), Gaps = 2/577 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S+ LD+ + +I KT ++ F +Y QY VA N +R E+E +Q L
Sbjct: 1 MGDVLSTHLDDARRQHIAEKTGKILTEFLRFYEDQYGVALFNSMRHEIEGTGLPQAQLLW 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
K PLE I++ L Q+ ED KKW+ R+ +V +++ + YENK AY++ PP+ I
Sbjct: 61 RKVPLEE-RIIFSGNLFQYQEDNKKWRNRFSLVPHNYGLVLYENKVAYERQIPPRAVINS 119
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG K+LTS D+Y L P T+ K + P + P +FP+ LW P RH YFC
Sbjct: 120 AGYKILTSLDQYLELVGNSLP---GTTPKSGSAPILKCPTQFPLILWHPSARHYYFCMMT 176
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AEQ K+ A+L DC+RH N+ + E AF +A++ +RQ K YG+WEM G+E+QI
Sbjct: 177 EAEQDKWQAVLQDCVRHCNNGIPEDSKVEGPAFTDAIRMYRQSKELYGTWEMLCGNEVQI 236
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL P L+ +L+P+++GK +R+R W + + Y +V Q A+ + +
Sbjct: 237 LSNLVMEELGPELKAELIPRLKGKPQERQRQWIQISDAVYRMVYEQAKARFEAVLSKLQL 296
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
+E IR+DMDQI+TSK L KI+A + AE VQP++ SILE LM P S
Sbjct: 297 ARPAMEAVIRTDMDQIITSKEHLASKIRASILPKAEVCVRNHVQPYIPSILEALMVPTSQ 356
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GF+EVR +F KEV +++ N +L E +++L L +KM CY+K+ L+ L
Sbjct: 357 GFTEVRDVFFKEVTDMNLNVINEGGIDKLGEYMEKLSQLAYHPLKMHSCYEKMEPLR--L 414
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKL 1604
L+ RF + + QR Q +M+E M+NAV+TFE LL L +K + +I+++
Sbjct: 415 DGLQQRFDVSSMSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRILE 474
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
RVLK+YDYDSST+RKR F+EAL+QIT+P + K LA CK EL ++++ IF D I VE
Sbjct: 475 RVLKKYDYDSSTVRKRFFREALLQITIPFLLKKLAPTCKSELSRFQELIFEDFARFILVE 534
Query: 1785 NVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 1895
N YEE++ Q ++ + L+ +KEAAV +KHNL+ D++ +
Sbjct: 535 NTYEEVVLQTVMKDILQAVKEAAVQRKHNLYRDSVVM 571
>ref|NP_001179291.1| filamin-A-interacting protein 1 [Bos taurus].
Length = 1213
Score = 52.8 bits (125), Expect = 2e-06
Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K + K+ L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI---KQEEKKV--DGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 552 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREI 610
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S R E E ++ + T + RLK L QL + D +K E Y
Sbjct: 611 TRGRS--RKGPELTCPEDNKIKELTLEIERLKNRLQQLEVVEGDLMKTEDEYDQLEQKFR 668
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 669 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 725
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 726 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEE 758
>ref|XP_002690075.1| PREDICTED: filamin A interacting protein 1 [Bos taurus].
Length = 1213
Score = 52.8 bits (125), Expect = 2e-06
Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K + K+ L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI---KQEEKKV--DGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 552 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREI 610
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S R E E ++ + T + RLK L QL + D +K E Y
Sbjct: 611 TRGRS--RKGPELTCPEDNKIKELTLEIERLKNRLQQLEVVEGDLMKTEDEYDQLEQKFR 668
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 669 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 725
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 726 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEE 758
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 97,008,555
Number of extensions: 2660571
Number of successful extensions: 9794
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9743
Number of HSP's successfully gapped: 6
Length of query: 857
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 746
Effective length of database: 14,008,606
Effective search space: 10450420076
Effective search space used: 10450420076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537163.2| PREDICTED: similar to niban protein isoform 2 [... 1254 0.0
Alignment gi|XP_851563.1| PREDICTED: similar to niban protein [Canis fami... 443 e-124
Alignment gi|XP_852572.1| PREDICTED: similar to B-cell novel protein 1 [C... 179 1e-44
Alignment gi|XP_867513.1| PREDICTED: similar to filamin A interacting pro... 55 3e-07
Alignment gi|XP_867503.1| PREDICTED: similar to filamin A interacting pro... 55 3e-07
Alignment gi|XP_867493.1| PREDICTED: similar to filamin A interacting pro... 55 3e-07
Alignment gi|XP_539003.2| PREDICTED: similar to filamin A interacting pro... 55 3e-07
>ref|XP_537163.2| PREDICTED: similar to niban protein isoform 2 [Canis familiaris].
Length = 934
Score = 1254 bits (3244), Expect = 0.0
Identities = 641/773 (82%), Positives = 672/773 (86%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASS LDEGKC YIRGKTEA IKNFSP+YSRQY+VAFCNHVRSEVEQQRD TSQFLK
Sbjct: 1 MGGSASSLLDEGKCTYIRGKTEATIKNFSPFYSRQYAVAFCNHVRSEVEQQRDLTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKPPLEPGT+LYEAELSQFAEDIKKWKERY+V+KNDFAVESYENKEAYQ+G PK RILP
Sbjct: 61 TKPPLEPGTVLYEAELSQFAEDIKKWKERYIVIKNDFAVESYENKEAYQRGVAPKSRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTSE+EYNLLSDR FPDP+A SEKEN QPFV LPKEFPVYLWQPFLRH YFCF E
Sbjct: 121 AGGKVLTSENEYNLLSDRFFPDPLAPSEKENAQPFVVLPKEFPVYLWQPFLRHGYFCFHE 180
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
A +QKKFSALL+DCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEM TGDE+QI
Sbjct: 181 ATDQKKFSALLSDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMITGDEVQI 240
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEELLPTLQTDLLPKM+GKKNDRKRAWFGLLE+AYNLVQHQVSEGLS LKEECR
Sbjct: 241 LSNLVMEELLPTLQTDLLPKMKGKKNDRKRAWFGLLEDAYNLVQHQVSEGLSTLKEECRT 300
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTK LEGTIRSDMDQIV SKNFLIGKIKAMVAQPAE SCAESVQPFLASILEELMGPVSS
Sbjct: 301 LTKGLEGTIRSDMDQIVNSKNFLIGKIKAMVAQPAERSCAESVQPFLASILEELMGPVSS 360
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSEVRSLFEKEVDELSQ FQTTKD A+LKE L QLMNLPLDS+KMEPCY KVNLLQE L
Sbjct: 361 GFSEVRSLFEKEVDELSQKFQTTKDSAQLKEHLGQLMNLPLDSLKMEPCYSKVNLLQERL 420
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
QDLKSRFRFPH+DLV+QRTQNYMQELMENAVFTFEQLLSPHLQGE SKT VAIEKVKLRV
Sbjct: 421 QDLKSRFRFPHVDLVVQRTQNYMQELMENAVFTFEQLLSPHLQGETSKTAVAIEKVKLRV 480
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRKRIFQEALVQITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENV
Sbjct: 481 LKQYDYDSSTIRKRIFQEALVQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENV 540
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEILHQ LLDETLKVIKEAA+LKKHNLFEDNMALPSESVSSLTD+KT AGSNQASPARR
Sbjct: 541 YEEILHQSLLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDIKTSAGSNQASPARR 600
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
ASA+LPG DSE +SNEVFQ LAK E G GQ+IIS M
Sbjct: 601 ASALLPGVSDSETLSNEVFQESGEKKQPGVSSPLAKEESLSFPVPTPPPVGTGQMIISGM 660
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
D P V+LV AEDTAG LGTHSS +SAS SLKELR+LLTVTI
Sbjct: 661 DGPLVDLVTAEDTAGALGTHSSELEFGGAPKDGEPTHEKPESSSASSSLKELRNLLTVTI 720
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENK 2489
EVP ES L+IEEDTNEETL PQ MEK EE TP T A AAASSQD+C E++
Sbjct: 721 EVPVESSTLEIEEDTNEETLAPQEMEKLEETTPTYTEANQAAASSQDSCEESE 773
>ref|XP_851563.1| PREDICTED: similar to niban protein [Canis familiaris].
Length = 745
Score = 443 bits (1140), Expect = e-124
Identities = 236/577 (40%), Positives = 345/577 (59%), Gaps = 2/577 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S+ LD+ + +I KT ++ F +Y QY VA + +R E+E SQ L
Sbjct: 1 MGDVLSTHLDDARRQHIAEKTGKILTEFLRFYEDQYGVALFHSMRHEIEATGAPQSQLLW 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
K PL+ I++ L Q+ ED KKW+ R+ +V +++ + YENK AY++ PP+ I
Sbjct: 61 RKVPLDE-RIIFSGNLFQYQEDNKKWRNRFSLVPHNYGLVLYENKVAYERQVPPRAVINS 119
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG K+LTS D+Y L P + K + P + P +FP+ LW P RH YFC
Sbjct: 120 AGYKILTSVDQYLELVSNSLP---GITSKSGSTPILKCPTQFPLILWHPSARHYYFCMMT 176
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AEQ K+ A+L DCIRH N+ + E AF +A++ +RQ K YG+WEM G+E+QI
Sbjct: 177 EAEQDKWQAVLQDCIRHCNNGIPEASKVEGPAFTDAIRMYRQSKELYGTWEMLCGNEVQI 236
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL P L+ +L P+++GK +R+R W + + Y +V Q A+ + +
Sbjct: 237 LSNLVMEELGPELKAELAPRLKGKPQERQRQWIQISDAVYRMVYEQAKARFEAVLAKLQL 296
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
+E TIR+DMDQI+TSK L KI+A + AE VQP++ SILE LM P S
Sbjct: 297 ARPAMEATIRTDMDQIITSKEHLASKIRAFILPKAEVCVRNHVQPYIPSILEALMVPTSQ 356
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GF+EVR +F KEV +++ N +L E +++L L +KM+ CY+K+ L+ L
Sbjct: 357 GFTEVRDVFFKEVTDMNLNIINEGGADKLGEYMEKLSQLAYHPLKMQSCYEKMEPLR--L 414
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKL 1604
L+ RF + QR Q +M+E M+NAV+TFE LL L S+ + A +++
Sbjct: 415 DGLQQRFDVSSTSVFKQRAQIHMREQMDNAVYTFESLLYQELGKGPSREELCKATQRILE 474
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
RVLK+YDYDSS++RKR F+EAL+QIT+P + K LA CK EL ++++ IF D I VE
Sbjct: 475 RVLKKYDYDSSSVRKRFFREALLQITIPFLLKKLAPTCKSELPRFQELIFEDFARFILVE 534
Query: 1785 NVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 1895
N YEE++ Q ++ + L+ +KEAAV +KHNL+ D+M +
Sbjct: 535 NTYEEVVLQTVMKDILQAVKEAAVQRKHNLYRDSMVM 571
>ref|XP_852572.1| PREDICTED: similar to B-cell novel protein 1 [Canis familiaris].
Length = 444
Score = 179 bits (454), Expect = 1e-44
Identities = 120/429 (27%), Positives = 200/429 (46%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGG SS LD+ + ++RG+ +A+++NF P Y Q + + + E+E + + Q ++
Sbjct: 1 MGGRPSSPLDKRQQQHLRGQVDALLRNFLPCYRGQLAASVLRQISRELEPREPAGCQLMR 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
+K P + L+Q +W+ + V++ D +E + +E Y+ G P +
Sbjct: 61 SKKL--PRVREHRGHLTQLGGHPPRWQPIFCVLRGDGRLEWFSLREEYENGGHPLGSMTL 118
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
G VLTS+ EY L D P +E P + +P FP++L PF RH F
Sbjct: 119 TGYTVLTSQREYLHLLDTLCPVSSGDHTQEEPDPLLEMPVTFPLFLQHPFRRHLCFSAAS 178
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
Q+ + L IR + A+AFL+AV+ +RQ +GH+G ++T G + ++
Sbjct: 179 REAQRAWRLALQGGIRLRGTVLQRSKAPAARAFLDAVRLYRQHQGHFGGDDVTLGSDAEV 238
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
L+ ++M ELLP L+ LP +RG R AW LL+ + V S GL A + E
Sbjct: 239 LTGVLMRELLPALRAQTLPGLRGAGRHRAWAWIELLDAVHAAVLAGASAGLRAFQPEKDE 298
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
L LE TIR D + S A V L+ + ++L+ + +
Sbjct: 299 LLTVLEKTIRPDETRY------------------CGSGSAWKVDTQLSLVTQKLLSTMEA 340
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
S V++L + +D LS++ + + G L++ + +P D M+ CY + Q L
Sbjct: 341 VLSAVQTLLAQGMDRLSRHLRGSSSGTWLRKEVYSFGEMPWDPELMQTCYREAERSQGRL 400
Query: 1431 QDLKSRFRF 1457
L F F
Sbjct: 401 GQLVVPFGF 409
>ref|XP_867513.1| PREDICTED: similar to filamin A interacting protein 1 isoform 4
[Canis familiaris].
Length = 1310
Score = 55.5 bits (132), Expect = 3e-07
Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 536 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 595
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 596 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 648
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 649 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGMEEVEREI 707
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S S E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 708 TRGRSRKGS--ELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 765
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 766 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 822
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 823 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFLEE 855
>ref|XP_867503.1| PREDICTED: similar to filamin A interacting protein 1 isoform 3
[Canis familiaris].
Length = 1280
Score = 55.5 bits (132), Expect = 3e-07
Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 506 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 565
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 566 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 618
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 619 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGMEEVEREI 677
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S S E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 678 TRGRSRKGS--ELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 735
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 736 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 792
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 793 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFLEE 825
>ref|XP_867493.1| PREDICTED: similar to filamin A interacting protein 1 isoform 2
[Canis familiaris].
Length = 965
Score = 55.5 bits (132), Expect = 3e-07
Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 191 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 250
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 251 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 303
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 304 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGMEEVEREI 362
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S S E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 363 TRGRSRKGS--ELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 420
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 421 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 477
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 478 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFLEE 510
>ref|XP_539003.2| PREDICTED: similar to filamin A interacting protein 1 isoform 1
[Canis familiaris].
Length = 1213
Score = 55.5 bits (132), Expect = 3e-07
Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 552 KKLLK-LKSEMEEKVYNLTKERDELIGKLKSEEEKSSELSCSVDLLKKRLDGMEEVEREI 610
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S S E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 611 TRGRSRKGS--ELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 668
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 669 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 725
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 726 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFLEE 758
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 101,265,972
Number of extensions: 2743590
Number of successful extensions: 10160
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10116
Number of HSP's successfully gapped: 7
Length of query: 857
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 746
Effective length of database: 15,174,208
Effective search space: 11319959168
Effective search space used: 11319959168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_443198.1| protein Niban isoform 2 [Homo sapiens]. 1214 0.0
Alignment gi|NP_073744.2| niban-like protein 1 isoform 1 [Homo sapiens]. 439 e-123
Alignment gi|NP_001030611.1| niban-like protein 1 isoform 2 [Homo sapiens]. 430 e-120
Alignment gi|NP_001091994.1| niban-like protein 2 isoform b [Homo sapiens]. 254 3e-67
Alignment gi|NP_775815.2| niban-like protein 2 isoform a [Homo sapiens]. 251 2e-66
Alignment gi|NP_056502.1| filamin-A-interacting protein 1 [Homo sapiens]. 55 3e-07
>ref|NP_443198.1| protein Niban isoform 2 [Homo sapiens].
Length = 928
Score = 1214 bits (3141), Expect = 0.0
Identities = 632/797 (79%), Positives = 666/797 (83%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASSQLDEGKCAYIRGKTEA IKNFSPYYSRQYSVAFCNHVR+EVEQQRD TSQFLK
Sbjct: 1 MGGSASSQLDEGKCAYIRGKTEAAIKNFSPYYSRQYSVAFCNHVRTEVEQQRDLTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKPPL PGTILYEAELSQF+EDIKKWKERYVVVKND+AVESYENKEAYQ+GA PKCRILP
Sbjct: 61 TKPPLAPGTILYEAELSQFSEDIKKWKERYVVVKNDYAVESYENKEAYQRGAAPKCRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTSEDEYNLLSDRHFPDP+A+SEKENTQPFV LPKEFPVYLWQPF RH YFCF E
Sbjct: 121 AGGKVLTSEDEYNLLSDRHFPDPLASSEKENTQPFVVLPKEFPVYLWQPFFRHGYFCFHE 180
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AA+QK+FSALL+DC+RHLNHDY KQMTFEAQAFLEAVQFFRQEKGHYGSWEM TGDEIQI
Sbjct: 181 AADQKRFSALLSDCVRHLNHDYMKQMTFEAQAFLEAVQFFRQEKGHYGSWEMITGDEIQI 240
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEELLPTLQTDLLPKM+GKKNDRKR W GLLEEAY LVQHQVSEGLSALKEECRA
Sbjct: 241 LSNLVMEELLPTLQTDLLPKMKGKKNDRKRTWLGLLEEAYTLVQHQVSEGLSALKEECRA 300
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTK LEGTIRSDMDQIV SKN+LIGKIKAMVAQPAE SC ESVQPFLASILEELMGPVSS
Sbjct: 301 LTKGLEGTIRSDMDQIVNSKNYLIGKIKAMVAQPAEKSCLESVQPFLASILEELMGPVSS 360
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSEVR LFEKEV+E+SQNFQTTKD +LKE LD+LMNLPL SVKMEPCY KVNLL E L
Sbjct: 361 GFSEVRVLFEKEVNEVSQNFQTTKDSVQLKEHLDRLMNLPLHSVKMEPCYTKVNLLHERL 420
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
QDLKSRFRFPHIDLV+QRTQNYMQELMENAVFTFEQLLSPHLQGEASKT VAIEKVKLRV
Sbjct: 421 QDLKSRFRFPHIDLVVQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTAVAIEKVKLRV 480
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRK+IFQEALVQITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENV
Sbjct: 481 LKQYDYDSSTIRKKIFQEALVQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENV 540
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEILHQILLDETLKVIKEAA+LKKHNLFEDNMALPSESVSSLTDLK P GSNQASPARR
Sbjct: 541 YEEILHQILLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKPPTGSNQASPARR 600
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
ASAILPG SE +SNEVFQ LAKGE G Q+IIS +
Sbjct: 601 ASAILPGVLGSETLSNEVFQESEEEKQPEVPSSLAKGESLSLPGPSPPPDGTEQVIISRV 660
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
DDP VN VA EDTAG GT SS +ASGSLK LR LLT ++
Sbjct: 661 DDPVVNPVATEDTAGLPGTCSSELEFGGTLEDEEPAQEEPEPITASGSLKALRKLLTASV 720
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENKXXXXXXX 2510
EVP +S + +EEDTN E+ VPQ E+EEE P AAA DNC E++
Sbjct: 721 EVPVDSAPV-MEEDTNGESHVPQENEEEEEKEP-----SQAAAIHPDNCEESEVSEREAQ 774
Query: 2511 XXXXXXXGEAXLGALPE 2561
GE LG PE
Sbjct: 775 PPCPEAHGE-ELGGFPE 790
>ref|NP_073744.2| niban-like protein 1 isoform 1 [Homo sapiens].
Length = 746
Score = 439 bits (1130), Expect = e-123
Identities = 234/577 (40%), Positives = 347/577 (60%), Gaps = 2/577 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S+ LD+ + +I KT ++ F +Y QY VA N +R E+E +Q L
Sbjct: 1 MGDVLSTHLDDARRQHIAEKTGKILTEFLQFYEDQYGVALFNSMRHEIEGTGLPQAQLLW 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
K PL+ I++ L Q ED KKW+ R+ +V +++ + YENK AY++ PP+ I
Sbjct: 61 RKVPLDE-RIVFSGNLFQHQEDSKKWRNRFSLVPHNYGLVLYENKAAYERQVPPRAVINS 119
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG K+LTS D+Y L P T+ K + P + P +FP+ LW P+ RH YFC
Sbjct: 120 AGYKILTSVDQYLELIGNSLP---GTTAKSGSAPILKCPTQFPLILWHPYARHYYFCMMT 176
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AEQ K+ A+L DCIRH N+ + E AF +A++ +RQ K YG+WEM G+E+QI
Sbjct: 177 EAEQDKWQAVLQDCIRHCNNGIPEDSKVEGPAFTDAIRMYRQSKELYGTWEMLCGNEVQI 236
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL P L+ +L P+++GK +R+R W + + Y++V Q + + +
Sbjct: 237 LSNLVMEELGPELKAELGPRLKGKPQERQRQWIQISDAVYHMVYEQAKARFEEVLSKVQQ 296
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
+ ++ IR+DMDQI+TSK L KI+A + AE VQP++ SILE LM P S
Sbjct: 297 VQPAMQAVIRTDMDQIITSKEHLASKIRAFILPKAEVCVRNHVQPYIPSILEALMVPTSQ 356
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GF+EVR +F KEV +++ N +L E +++L L +KM+ CY+K+ L+ L
Sbjct: 357 GFTEVRDVFFKEVTDMNLNVINEGGIDKLGEYMEKLSRLAYHPLKMQSCYEKMESLR--L 414
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKL 1604
L+ RF + QR Q +M+E M+NAV+TFE LL L +K + +I++V
Sbjct: 415 DGLQQRFDVSSTSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRVLE 474
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
RVLK+YDYDSS++RKR F+EAL+QI++P + K LA CK EL ++++ IF D I VE
Sbjct: 475 RVLKKYDYDSSSVRKRFFREALLQISIPFLLKKLAPTCKSELPRFQELIFEDFARFILVE 534
Query: 1785 NVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 1895
N YEE++ Q ++ + L+ +KEAAV +KHNL+ D+M +
Sbjct: 535 NTYEEVVLQTVMKDILQAVKEAAVQRKHNLYRDSMVM 571
>ref|NP_001030611.1| niban-like protein 1 isoform 2 [Homo sapiens].
Length = 733
Score = 430 bits (1105), Expect = e-120
Identities = 228/558 (40%), Positives = 337/558 (60%), Gaps = 2/558 (0%)
Frame = +3
Query: 228 KTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLKTKPPLEPGTILYEAELSQF 407
KT ++ F +Y QY VA N +R E+E +Q L K PL+ I++ L Q
Sbjct: 7 KTGKILTEFLQFYEDQYGVALFNSMRHEIEGTGLPQAQLLWRKVPLDE-RIVFSGNLFQH 65
Query: 408 AEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILPAGAKVLTSEDEYNLLSDRH 587
ED KKW+ R+ +V +++ + YENK AY++ PP+ I AG K+LTS D+Y L
Sbjct: 66 QEDSKKWRNRFSLVPHNYGLVLYENKAAYERQVPPRAVINSAGYKILTSVDQYLELIGNS 125
Query: 588 FPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQEAAEQKKFSALLTDCIRHLN 767
P T+ K + P + P +FP+ LW P+ RH YFC AEQ K+ A+L DCIRH N
Sbjct: 126 LP---GTTAKSGSAPILKCPTQFPLILWHPYARHYYFCMMTEAEQDKWQAVLQDCIRHCN 182
Query: 768 HDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQILSNLVMEELLPTLQTDLLP 947
+ + E AF +A++ +RQ K YG+WEM G+E+QILSNLVMEEL P L+ +L P
Sbjct: 183 NGIPEDSKVEGPAFTDAIRMYRQSKELYGTWEMLCGNEVQILSNLVMEELGPELKAELGP 242
Query: 948 KMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRALTKDLEGTIRSDMDQIVTS 1127
+++GK +R+R W + + Y++V Q + + + + ++ IR+DMDQI+TS
Sbjct: 243 RLKGKPQERQRQWIQISDAVYHMVYEQAKARFEEVLSKVQQVQPAMQAVIRTDMDQIITS 302
Query: 1128 KNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSSGFSEVRSLFEKEVDELSQN 1307
K L KI+A + AE VQP++ SILE LM P S GF+EVR +F KEV +++ N
Sbjct: 303 KEHLASKIRAFILPKAEVCVRNHVQPYIPSILEALMVPTSQGFTEVRDVFFKEVTDMNLN 362
Query: 1308 FQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHLQDLKSRFRFPHIDLVIQRT 1487
+L E +++L L +KM+ CY+K+ L+ L L+ RF + QR
Sbjct: 363 VINEGGIDKLGEYMEKLSRLAYHPLKMQSCYEKMESLR--LDGLQQRFDVSSTSVFKQRA 420
Query: 1488 QNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKLRVLKQYDYDSSTIRKRIFQ 1661
Q +M+E M+NAV+TFE LL L +K + +I++V RVLK+YDYDSS++RKR F+
Sbjct: 421 QIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRVLERVLKKYDYDSSSVRKRFFR 480
Query: 1662 EALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVI 1841
EAL+QI++P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +
Sbjct: 481 EALLQISIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAV 540
Query: 1842 KEAAVLKKHNLFEDNMAL 1895
KEAAV +KHNL+ D+M +
Sbjct: 541 KEAAVQRKHNLYRDSMVM 558
>ref|NP_001091994.1| niban-like protein 2 isoform b [Homo sapiens].
Length = 651
Score = 254 bits (649), Expect = 3e-67
Identities = 174/624 (27%), Positives = 293/624 (46%), Gaps = 7/624 (1%)
Frame = +3
Query: 153 PAPSVAMGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDS 332
P +MGG SS LD+ + ++RG+ + +++NF P Y Q + + + E+ Q +
Sbjct: 26 PGDDSSMGGRPSSPLDKQQRQHLRGQVDTLLRNFLPCYRGQLAASVLRQISRELGPQEPT 85
Query: 333 TSQFLKTKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPP 512
SQ L++K P + L+Q +W+ + V++ D +E + +KE Y+ G
Sbjct: 86 GSQLLRSKKL--PRVREHRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGHC 143
Query: 513 KCRILPAGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHS 692
G +LTS+ EY L D P+ + +E + +P FP++L PF RH
Sbjct: 144 LGSTALTGYTLLTSQREYLRLLDALCPESLGDHTQEEPDSLLEVPVSFPLFLQHPFRRHL 203
Query: 693 YFCFQEAAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTT 872
F Q + L IR + A+AFL+AV+ +RQ +GH+G ++T
Sbjct: 204 CFSAATREAQHAWRLALQGGIRLQGTVLQRSQAPAARAFLDAVRLYRQHQGHFGDDDVTL 263
Query: 873 GDEIQILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSAL 1052
G + ++L+ ++M E LP L+ LP +RG R AW LL+ + V S GL A
Sbjct: 264 GSDAEVLTAVLMREQLPALRAQTLPGLRGAGRARAWAWTELLDAVHAAVLAGASAGLCAF 323
Query: 1053 KEECRALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEEL 1232
+ E L LE TIR D+DQ++ + + G+++ + P ES V P L +++ L
Sbjct: 324 QPEKDELLASLEKTIRPDVDQLLRQRARVAGRLRTDIRGPLESCLRREVDPQLPRVVQTL 383
Query: 1233 MGPVSSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVN 1412
+ V + VR+L + +D LS + + G RL+ + +P D M+ CY +
Sbjct: 384 LRTVEASLEAVRTLLAQGMDRLSHRLRQSPSGTRLRREVYSFGEMPWDLALMQTCYREAE 443
Query: 1413 LLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQG--EASKTTVA 1586
+ L L + F F + ++ Q+ Q+LM +AV TF QL L +
Sbjct: 444 RSRGRLGQLAAPFGFLGMQSLVFGAQDLAQQLMADAVATFLQLADQCLTTALNCDQAAQR 503
Query: 1587 IEKVKLRVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHT 1766
+E+V+ RVLK++ DS ++R + + I LP + L CK EL ++E + A +
Sbjct: 504 LERVRGRVLKKFKSDSGLAQRRFIRGWGLCIFLPFVLSQLEPGCKKELPEFEGDVLAVGS 563
Query: 1767 HMIHVENVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTD--LKTP- 1937
+ E +YE+++ LL + +K+ L + VS D L+ P
Sbjct: 564 QALTTEGIYEDVIRGCLLQRIDQELKK--------------TLGANDVSCTLDGCLEVPW 609
Query: 1938 --AGSNQASPARRASAILPGGPDS 2003
G+++ + A R P PDS
Sbjct: 610 EQEGADEETEAEREGGACPRQPDS 633
>ref|NP_775815.2| niban-like protein 2 isoform a [Homo sapiens].
Length = 697
Score = 251 bits (641), Expect = 2e-66
Identities = 163/566 (28%), Positives = 274/566 (48%), Gaps = 5/566 (0%)
Frame = +3
Query: 153 PAPSVAMGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDS 332
P +MGG SS LD+ + ++RG+ + +++NF P Y Q + + + E+ Q +
Sbjct: 26 PGDDSSMGGRPSSPLDKQQRQHLRGQVDTLLRNFLPCYRGQLAASVLRQISRELGPQEPT 85
Query: 333 TSQFLKTKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPP 512
SQ L++K P + L+Q +W+ + V++ D +E + +KE Y+ G
Sbjct: 86 GSQLLRSKKL--PRVREHRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGHC 143
Query: 513 KCRILPAGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHS 692
G +LTS+ EY L D P+ + +E + +P FP++L PF RH
Sbjct: 144 LGSTALTGYTLLTSQREYLRLLDALCPESLGDHTQEEPDSLLEVPVSFPLFLQHPFRRHL 203
Query: 693 YFCFQEAAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTT 872
F Q + L IR + A+AFL+AV+ +RQ +GH+G ++T
Sbjct: 204 CFSAATREAQHAWRLALQGGIRLQGTVLQRSQAPAARAFLDAVRLYRQHQGHFGDDDVTL 263
Query: 873 GDEIQILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSAL 1052
G + ++L+ ++M E LP L+ LP +RG R AW LL+ + V S GL A
Sbjct: 264 GSDAEVLTAVLMREQLPALRAQTLPGLRGAGRARAWAWTELLDAVHAAVLAGASAGLCAF 323
Query: 1053 KEECRALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEEL 1232
+ E L LE TIR D+DQ++ + + G+++ + P ES V P L +++ L
Sbjct: 324 QPEKDELLASLEKTIRPDVDQLLRQRARVAGRLRTDIRGPLESCLRREVDPQLPRVVQTL 383
Query: 1233 MGPVSSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVN 1412
+ V + VR+L + +D LS + + G RL+ + +P D M+ CY +
Sbjct: 384 LRTVEASLEAVRTLLAQGMDRLSHRLRQSPSGTRLRREVYSFGEMPWDLALMQTCYREAE 443
Query: 1413 LLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQG--EASKTTVA 1586
+ L L + F F + ++ Q+ Q+LM +AV TF QL L +
Sbjct: 444 RSRGRLGQLAAPFGFLGMQSLVFGAQDLAQQLMADAVATFLQLADQCLTTALNCDQAAQR 503
Query: 1587 IEKVKLRVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHT 1766
+E+V+ RVLK++ DS ++R + + I LP + L CK EL ++E + A +
Sbjct: 504 LERVRGRVLKKFKSDSGLAQRRFIRGWGLCIFLPFVLSQLEPGCKKELPEFEGDVLAVGS 563
Query: 1767 HMIHVENVYEEILHQILL---DETLK 1835
+ E +YE+++ LL D+ LK
Sbjct: 564 QALTTEGIYEDVIRGCLLQRIDQELK 589
>ref|NP_056502.1| filamin-A-interacting protein 1 [Homo sapiens].
Length = 1213
Score = 55.1 bits (131), Expect = 3e-07
Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ LIGK+K+ + +E SC+ + +EE+ +
Sbjct: 552 KKLLK-LKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREI 610
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S S E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 611 TRGRSRKGS--ELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 668
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 669 TEQDKANFLSQQLEEIKHQIA---KNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQ 725
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 726 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEE 758
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 99,442,168
Number of extensions: 2701875
Number of successful extensions: 9745
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9696
Number of HSP's successfully gapped: 6
Length of query: 857
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 746
Effective length of database: 14,638,160
Effective search space: 10920067360
Effective search space used: 10920067360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071301.2| protein Niban [Mus musculus]. 1134 0.0
Alignment gi|NP_666231.1| niban-like protein 1 [Mus musculus]. 444 e-124
Alignment gi|NP_001159685.1| B-cell novel protein 1 [Mus musculus]. 202 1e-51
Alignment gi|NP_001074712.1| filamin-A-interacting protein 1 [Mus musculu... 52 3e-06
>ref|NP_071301.2| protein Niban [Mus musculus].
Length = 926
Score = 1134 bits (2933), Expect = 0.0
Identities = 595/799 (74%), Positives = 650/799 (81%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASSQLDEGKCAYIRGKTEA IKNFSPYYSRQYSVAFCNHVRSEVEQQRD TSQFLK
Sbjct: 1 MGGSASSQLDEGKCAYIRGKTEASIKNFSPYYSRQYSVAFCNHVRSEVEQQRDLTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKPPLEPGT+LYEAELSQFAEDI+KWK+RY+V+KNDFAVESYE+KEAYQ+GA PK RILP
Sbjct: 61 TKPPLEPGTVLYEAELSQFAEDIRKWKDRYIVIKNDFAVESYESKEAYQRGAVPKSRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTSE+EY+LLSD+HFPDP A+SEK N+QPFV LPK FPVYLWQP+LRH YFCF E
Sbjct: 121 AGGKVLTSEEEYSLLSDKHFPDPTASSEK-NSQPFVLLPKAFPVYLWQPYLRHGYFCFHE 179
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AAEQ+KFSALL DCIRHLNHDY KQ TFEAQAFLEAVQFFRQEKGHYGSWEMTTGDE+Q+
Sbjct: 180 AAEQQKFSALLNDCIRHLNHDYMKQTTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEVQV 239
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LS LVMEELLPTLQTDLLPK++GKKNDRKRAWFGLLEEAYNLVQHQVSEGL+ALKEECRA
Sbjct: 240 LSKLVMEELLPTLQTDLLPKLKGKKNDRKRAWFGLLEEAYNLVQHQVSEGLNALKEECRA 299
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTKDLEGTIRSDMDQIVTSKNFL GKI+AMVAQPAE C ESVQPFLASILEELMGPVSS
Sbjct: 300 LTKDLEGTIRSDMDQIVTSKNFLTGKIRAMVAQPAEQCCGESVQPFLASILEELMGPVSS 359
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSEVR+LFEKEVDELSQ+F T+D A+LKE L QLM LPLDSVKMEPCY KV LL E L
Sbjct: 360 GFSEVRALFEKEVDELSQSFHATQDSAQLKEGLQQLMKLPLDSVKMEPCYTKVTLLPERL 419
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
DL+SRFRFPH+DLV+QRTQNYMQELMENAVFTFEQLLSP+LQGEAS+ VAIEKVKLRV
Sbjct: 420 LDLQSRFRFPHVDLVVQRTQNYMQELMENAVFTFEQLLSPYLQGEASRIPVAIEKVKLRV 479
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRK+IFQEAL+QITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENV
Sbjct: 480 LKQYDYDSSTIRKKIFQEALIQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENV 539
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEIL++ILLDETLKVI EAA+LKKHNLFEDNMALPSESVSSLTDLKT GSNQASPARR
Sbjct: 540 YEEILYEILLDETLKVITEAAILKKHNLFEDNMALPSESVSSLTDLKTAMGSNQASPARR 599
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
SAILPG PD+E+ SNEVFQ GGDGQ+ S+
Sbjct: 600 VSAILPGAPDNELPSNEVFQEPEEKKEQPGVPG-----SLAISASSCPSGGDGQV---SV 651
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
D A + E+TAG L +H S ++ GSLKEL+ LLTVT+
Sbjct: 652 DHSAGGPLTVENTAGPLSSHLSEVEAGGTLKDEEPTCQSPEPSAVPGSLKELKKLLTVTV 711
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENKXXXXXXX 2510
V ES + +E D + T VPQ KEEE + + A AA QD+C E +
Sbjct: 712 SV--ESAPV-VENDIHNGTPVPQENIKEEE-SKIHPEASHPAAIQQDSCEEREVREKEAQ 767
Query: 2511 XXXXXXXGEAXLGALPEAQ 2567
G LG LPE +
Sbjct: 768 PLEAEAPG-VDLGILPEGR 785
>ref|NP_666231.1| niban-like protein 1 [Mus musculus].
Length = 749
Score = 444 bits (1141), Expect = e-124
Identities = 237/577 (41%), Positives = 347/577 (60%), Gaps = 2/577 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S+ LD+ + +I KTE ++ F +Y QY V+ N +R E+E +Q L
Sbjct: 1 MGDVLSTHLDDARRQHIAEKTEKILTEFLRFYEDQYGVSLFNSMRHEIEGTGPPQAQLLW 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
K PL+ I++ L Q+ ED KKW+ R+ +V +++ + YENK AY++ PP+ I
Sbjct: 61 RKVPLDE-RIIFSGNLFQYQEDNKKWRNRFSLVPHNYGLVLYENKVAYERQIPPRAVINS 119
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AG KVLTS D+Y L P T+ K + P + P +FP+ LW P+ RH YFC
Sbjct: 120 AGYKVLTSVDQYLELVGNSLP---GTTSKSGSTPILKCPTQFPLILWHPYARHYYFCMMT 176
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AEQ K+ A+L DC+RH N+ + E AF +A++ +RQ K YG+WEM G+E+QI
Sbjct: 177 EAEQDKWQAVLQDCVRHCNNGIPENSKVEGPAFTDAIRMYRQSKEQYGTWEMLCGNEVQI 236
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEEL P L+ +L P+++GK +R+R W + + Y LV Q + + +
Sbjct: 237 LSNLVMEELGPALKAELGPRLKGKPQERQRQWIQISDAVYRLVFEQAKVHFEDVLCKLQR 296
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
+E IR+DMDQI+TSK L KI+A + AE VQP++ SILE LM P S
Sbjct: 297 ARPAMEAVIRTDMDQIITSKEHLASKIRAFILPKAEVCVRNHVQPYIPSILEALMVPTSQ 356
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GF+EVR +F KEV +++ N +L E +++L L +KM+ CY+K+ L+ L
Sbjct: 357 GFTEVRDVFFKEVTDMNLNVINEGGIDKLGEYMEKLSQLAYHPLKMQSCYEKMEPLR--L 414
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTV--AIEKVKL 1604
L+ RF + QR Q +M+E M+NAV+TFE LL L +K + +I+++
Sbjct: 415 DGLQQRFDVSSTSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRILE 474
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
RVLK+YDYDSS++RKR F+EAL+QIT+P + K LA CK EL ++++ IF D I VE
Sbjct: 475 RVLKKYDYDSSSVRKRFFREALLQITIPFLLKKLAPTCKSELPRFQELIFEDFARFILVE 534
Query: 1785 NVYEEILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 1895
N YEE++ Q ++ + L+ +KEAAV +KHNL+ D+M L
Sbjct: 535 NTYEEVVLQTVMKDILQAVKEAAVQRKHNLYRDSMVL 571
>ref|NP_001159685.1| B-cell novel protein 1 [Mus musculus].
Length = 591
Score = 202 bits (513), Expect = 1e-51
Identities = 151/561 (26%), Positives = 248/561 (44%), Gaps = 2/561 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MG S L + ++G+ +++ F P Y RQ + A H+ E+ Q + Q
Sbjct: 1 MGAQPSCPLGRRQRQQLQGQVNGMLRTFLPCYRRQLAAAVLRHISQELGPQDPAGCQLSH 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TK P ++ L+ +W+ + V++ D +E + +KE Y+ G P
Sbjct: 61 TKKL--PRVREHQGPLTLLQGHPPQWQPTFCVLRGDGRLEWFSHKENYESGGCPLGFAAL 118
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
G +LTS+ EY L D P E + P F ++L PF H FC +
Sbjct: 119 TGYTLLTSQREYLCLLDDLCPSSSGDLALEEPLRVLEEPVSFALFLVHPFRAHLCFCARS 178
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
+ + L IR + A AFL+AV +R+ +G+ G + G + ++
Sbjct: 179 RKAHRAWRLGLQGAIRLRATVLQRSRAPAACAFLDAVLLYRRRRGYAGGDDGILGSDAEV 238
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LS +M ELLP L+ L +RG R RA L+ + V S GL A + E A
Sbjct: 239 LSAELMRELLPGLRAQTLRSLRGAGRARARACAEFLDAVHTAVLAWASSGLRAFQPEKDA 298
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
L LE +R+D++QI+ + +I+A + E+ + V P L + L+ PV +
Sbjct: 299 LLAALERMVRADLEQILQQRALGARRIEAEIQGAVEACLCQKVDPQLPQLTLALLSPVEA 358
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
VR+L + +D L + G RL + + +P D M+ CY + HL
Sbjct: 359 TLRAVRTLLIQGMDRLCHYLRKNPSGTRLCREVYEFGEIPWDPELMQACYREAERNHSHL 418
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVA--IEKVKL 1604
L F F + ++ Q+ Q+LM AV TF QL L ++ A + KV+
Sbjct: 419 VQLAKPFDFLGMRSLVFGAQDLAQQLMAAAVTTFLQLADQCLTSALDRSQAAEQLGKVRG 478
Query: 1605 RVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVE 1784
VLK++ DS T R R ++ L++I P + L C E + + I A ++ E
Sbjct: 479 LVLKKFTSDSETTRWRFTRDCLLRIFWPFVWSQLRLRCNLEPPEVDGDILAMGWQVLTTE 538
Query: 1785 NVYEEILHQILLDETLKVIKE 1847
VY +++ +LL + +K+
Sbjct: 539 GVYRDVIQGLLLQRIDRELKK 559
>ref|NP_001074712.1| filamin-A-interacting protein 1 [Mus musculus].
Length = 1214
Score = 51.6 bits (122), Expect = 3e-06
Identities = 78/341 (22%), Positives = 151/341 (44%), Gaps = 26/341 (7%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSRSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKVELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTS----KNFLIGKIKAMVAQPAESSCAESVQPFLASILEEL 1232
+ L K ++S+M++ V S ++ L+GK+++ + E SC+ + +EE+
Sbjct: 552 KKLLK-----LKSEMEEKVYSLTKERDELMGKLRSEEERSCELSCSVDLLKKRLDGIEEV 606
Query: 1233 MGPVSSGF----SEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY 1400
++ G SE + ++ EL+ + RLK+ L QL + D +K E Y
Sbjct: 607 EREINRGRLCKGSEFTCPEDNKIRELTLEIE------RLKKRLQQLEVVEGDLMKTEDEY 660
Query: 1401 -----------DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLS 1547
DK N L + L+++K + + I++ + QE F E+ S
Sbjct: 661 DQLEQKFRTEQDKANFLSQQLEEIKHQMA---KNKAIEKGEAVSQEAELRHRFRMEEAKS 717
Query: 1548 PHLQGEASKTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
LQ E I ++ K L Q D S +++R +E
Sbjct: 718 RDLQAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEE 758
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 84,223,573
Number of extensions: 2259333
Number of successful extensions: 8038
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8013
Number of HSP's successfully gapped: 4
Length of query: 857
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 747
Effective length of database: 12,313,599
Effective search space: 9198258453
Effective search space used: 9198258453
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230148.1| protein Niban-like [Sus scrofa]. 1422 0.0
Alignment gi|XP_003123543.2| PREDICTED: niban-like protein 2-like [Sus sc... 244 2e-64
Alignment gi|XP_003121454.2| PREDICTED: LOW QUALITY PROTEIN: filamin-A-in... 54 6e-07
>ref|NP_001230148.1| protein Niban-like [Sus scrofa].
Length = 934
Score = 1422 bits (3682), Expect = 0.0
Identities = 735/801 (91%), Positives = 736/801 (91%), Gaps = 1/801 (0%)
Frame = +3
Query: 171 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 350
MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK
Sbjct: 1 MGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSVAFCNHVRSEVEQQRDSTSQFLK 60
Query: 351 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 530
TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP
Sbjct: 61 TKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFAVESYENKEAYQKGAPPKCRILP 120
Query: 531 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 710
AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE
Sbjct: 121 AGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVALPKEFPVYLWQPFLRHSYFCFQE 180
Query: 711 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 890
AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI
Sbjct: 181 AAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQFFRQEKGHYGSWEMTTGDEIQI 240
Query: 891 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 1070
LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA
Sbjct: 241 LSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRA 300
Query: 1071 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 1250
LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS
Sbjct: 301 LTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPVSS 360
Query: 1251 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 1430
GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL
Sbjct: 361 GFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCYDKVNLLQEHL 420
Query: 1431 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 1610
QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV
Sbjct: 421 QDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTVAIEKVKLRV 480
Query: 1611 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 1790
LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV
Sbjct: 481 LKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENV 540
Query: 1791 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 1970
YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR
Sbjct: 541 YEEILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARR 600
Query: 1971 ASAILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSM 2150
ASAILPGGPDSEIVSNEVFQ LAKGE GGDGQLIISSM
Sbjct: 601 ASAILPGGPDSEIVSNEVFQESGEKKESGVSSSLAKGESLPSPVPSPPPGGDGQLIISSM 660
Query: 2151 DDPAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTI 2330
DDPAVNLVAAEDTAGDLGTHSS TSASGSLKELRDLLTVTI
Sbjct: 661 DDPAVNLVAAEDTAGDLGTHSSELECEETPEDQEPPQEKPEPTSASGSLKELRDLLTVTI 720
Query: 2331 EVPAESGKLKIEEDTNEETLVPQGMEKEEENTPVCTGAPSAAASSQDNCAENK-XXXXXX 2507
EVPAESGKLKIEEDTNEETLVPQ MEKEEE T VCTGA AAASSQDNCAEN+
Sbjct: 721 EVPAESGKLKIEEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETH 780
Query: 2508 XXXXXXXXGEAXLGALPEAQP 2570
GEA LGALPEAQP
Sbjct: 781 PPAPEAEAGEAELGALPEAQP 801
>ref|XP_003123543.2| PREDICTED: niban-like protein 2-like [Sus scrofa].
Length = 666
Score = 244 bits (622), Expect = 2e-64
Identities = 165/584 (28%), Positives = 284/584 (48%), Gaps = 2/584 (0%)
Frame = +3
Query: 105 SLPPGEWAGQPRAQHPPAPSVAMGGSASSQLDEGKCAYIRGKTEAVIKNFSPYYSRQYSV 284
SL G G PR MGG SS LD+ + +RG+ + +++NF P Y Q +
Sbjct: 33 SLVLGSGKGSPR------DGSRMGGRPSSPLDKRQQKQLRGQVDTLLRNFLPCYRGQLAA 86
Query: 285 AFCNHVRSEVEQQRDSTSQFLKTKPPLEPGTILYEAELSQFAEDIKKWKERYVVVKNDFA 464
+ + E+ Q + Q L +K P + L+ +W+ + V++ D
Sbjct: 87 SVLWQISQELGPQEPAGCQLLHSKKL--PRVREHRGPLTLLQGHPPQWQPIFCVLRGDGR 144
Query: 465 VESYENKEAYQKGAPPKCRILPAGAKVLTSEDEYNLLSDRHFPDPIATSEKENTQPFVAL 644
+E + ++E Y+ G P G VLTS+ EY L D PD +E +
Sbjct: 145 LEWFSHREEYENGDHPLESTPLTGYTVLTSQSEYLRLLDALCPDSSGDHTQEEPDLLLET 204
Query: 645 PKEFPVYLWQPFLRHSYFCFQEAAEQKKFSALLTDCIRHLNHDYTKQMTFEAQAFLEAVQ 824
P +FP++L PF RH Q+ +S L IR + A+AFL+A++
Sbjct: 205 PVQFPLFLQHPFRRHLCLSAATGKMQQAWSLALQGGIRLRGTVLRRSQAPAARAFLDAIR 264
Query: 825 FFRQEKGHYGSWEMTTGDEIQILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEE 1004
+RQ++GH+G + T G + ++L+ ++M +LLP L++ LP +R R +W LL+
Sbjct: 265 LYRQQRGHFGDDDATLGSDAEVLTAVLMRQLLPELRSQTLPGLRESGRARAWSWTKLLDA 324
Query: 1005 AYNLVQHQVSEGLSALKEECRALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESS 1184
+ V S GL A + E L LE TIR D++Q++ + + G+++A V P ES
Sbjct: 325 VHAAVLAGASAGLRAFQPEKDELLVALERTIRPDVEQMLQLQARVAGRLQAEVQGPLESC 384
Query: 1185 CAESVQPFLASILEELMGPVSSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMN 1364
V L + + L+ + + + V++L + +D LS++ + + GARL++ +
Sbjct: 385 LHRKVDMQLPRVTQTLLSTLEAELTVVQTLLTQGMDRLSRHLRRSSSGARLRKEVYSFGE 444
Query: 1365 LPLDSVKMEPCYDKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLL 1544
+P D M+ CY + + L L + F F ++ Q+ Q+LM +AV TF QL
Sbjct: 445 MPWDPELMQTCYHEAEQSRGRLGQLTAPFGFFGTQSLVFGAQDLAQQLMADAVATFLQLA 504
Query: 1545 SPHLQG--EASKTTVAIEKVKLRVLKQYDYDSSTIRKRIFQEALVQITLPTMQKALASMC 1718
+L + + +EKV RVLK++ DS + R++ L+ I LP + L C
Sbjct: 505 DQYLTTALDCDQAAQQLEKVGGRVLKKFRSDSGSARRKFIHGWLLCIFLPFVLSQLEPSC 564
Query: 1719 KPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEA 1850
K EL ++E + A + + +E +YE+++ +LL + +K+A
Sbjct: 565 KAELPEFEGEVLAMGSPALTIEGIYEDVVRGVLLQRINQELKKA 608
>ref|XP_003121454.2| PREDICTED: LOW QUALITY PROTEIN: filamin-A-interacting protein 1-like
[Sus scrofa].
Length = 1095
Score = 53.5 bits (127), Expect = 6e-07
Identities = 76/333 (22%), Positives = 148/333 (44%), Gaps = 18/333 (5%)
Frame = +3
Query: 720 QKKFSALLTDCIR-HLNHDYTKQMTFEAQAFLEAVQFFRQE----KGHYGSWEMTTGDEI 884
++ FS ++C + HLN + K +T + LE V+ +E + E++ D++
Sbjct: 439 EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 498
Query: 885 QILSNLVMEELLPTLQTDLLPKMRGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEEC 1064
L + + +L + +++ K+ K+ +RK L + + + Q +V + L EE
Sbjct: 499 TKLKSFTV--MLVDERKNMMEKI--KQEERK---VDGLNKNFKVEQGKVMDVTEKLIEES 551
Query: 1065 RALTKDLEGTIRSDMDQIVTSKNFLIGKIKAMVAQPAESSCAESVQPFLASILEELMGPV 1244
+ L K L+ + + + ++ L+GK+K+ + +E SC+ + +EE+ +
Sbjct: 552 KKLLK-LKSEMEEKVYNLTKERDELLGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREI 610
Query: 1245 SSGFSEVRSLFEKEVDELSQNFQTTKDGARLKELLDQLMNLPLDSVKMEPCY-------- 1400
+ G S R E E ++ + T + RLK+ L QL + D +K E Y
Sbjct: 611 TRGRS--RKGPELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFR 668
Query: 1401 ---DKVNLLQEHLQDLKSRFRFPHIDLVIQRTQNYMQELMENAVFTFEQLLSPHLQGEAS 1571
DK N L + L+++K + + I++ + QE F E+ S L+ E
Sbjct: 669 TEQDKANFLSQQLEEIKHQMA---KNKAIEKGEAVSQEAELRHRFRLEEAKSRDLKAEVQ 725
Query: 1572 KTTVAIEKV--KLRVLKQYDYDSSTIRKRIFQE 1664
I ++ K L Q D S +++R +E
Sbjct: 726 ALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEE 758
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 62,486,384
Number of extensions: 1709880
Number of successful extensions: 6397
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6377
Number of HSP's successfully gapped: 3
Length of query: 857
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 749
Effective length of database: 8,655,056
Effective search space: 6482636944
Effective search space used: 6482636944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007512
(2572 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1215 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1215 bits (613), Expect = 0.0
Identities = 715/743 (96%), Gaps = 8/743 (1%)
Strand = Plus / Minus
Query: 1835 agtgataaaggaagctgctgtcctgaagaaacacaacttatttgaagacaacatggccct 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456835 agtgataaaggaagctgctgtcctgaagaaacacaacttatttgaagacaacatggccct 138456776
Query: 1895 gcccagcgaaagcgtgtccagcttaactgatctaaaaactcctgcagggtccaaccaggc 1954
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 138456775 gcccagcgaaagcgtgtccagcttaactgatctaaaaactcctgcagggtccaatcaggc 138456716
Query: 1955 cagccctgccaggagagcctctgccattctgccaggcggtccagatagtgagatcgtgag 2014
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456715 cagccctgc-aggagagcctctgccattctgccaggcggtccagatagtgagatcgtgag 138456657
Query: 2015 taatgaggtattccaggagtcaggggaaaagaaggagtctggggtctccagttctttggc 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456656 taatgaggtattccaggagtcaggggaaaagaaggagtctggggtctccagttctttggc 138456597
Query: 2075 caaaggagaaagccttccttcccctgtgcccagccctcccccaggcggggacgggcagct 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456596 caaaggagaaagccttccttcccctgtgcccagccctcccccaggcggggacgggcagct 138456537
Query: 2135 catcatttcaagcatggatgaccctgctgtgaatcttgtggctgcagaggacacagcagg 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456536 catcatttcaagcatggatgaccctgctgtgaatcttgtggctgcagaggacacagcagg 138456477
Query: 2195 agacctgggcacacactcatcagagctggagtgtgaggagactcctgaggaccaagaann 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456476 agacctgggcacacactcatcagagctggagtgtgaggagactcctgaggaccaagaacc 138456417
Query: 2255 nnnnnaggaaaagcccgagcccacctctgcctcaggctccttgaaagaactcagagacct 2314
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 138456416 cccccaggaaaagcccgagcccacctctgcctcaggctccttgaaggaactcagagacct 138456357
Query: 2315 gttgacagtgaccattgaagtaccagcggagtctggcaagctcaagattgaagaagatac 2374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456356 gttgacagtgaccattgaagtaccagcggagtctggcaagctcaagattgaagaagatac 138456297
Query: 2375 aaatgaggagaccctggttccccagggaatggaaaaagaagaggaaaacaccccagtctg 2434
|||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 138456296 aaatgaggagaccctggttccccaggaaatggaaaaagaagaggaaacaacccaagtctg 138456237
Query: 2435 cacaggggccccatc-agcagctgcctccagtcaggacaactgtgcagaaaa-caagtgc 2492
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 138456236 cacagggg-cccatcaagcagctgcctccagtcaggacaactgtgcagaaaaccaagtgc 138456178
Query: 2493 atgagagagaga-ccatcctcctgctccgaagnnccgag--cggggaagcaaanttgggg 2549
|||||||||||| ||||||||||||||| || ||||| ||||| ||| | ||||||
Sbjct: 138456177 atgagagagagacccatcctcctgctccagag-gccgaggcgggggaggcagagttgggg 138456119
Query: 2550 gcccttccagaggctcagccagc 2572
|||||||||||||||||||||||
Sbjct: 138456118 gcccttccagaggctcagccagc 138456096
Score = 440 bits (222), Expect = e-120
Identities = 225/226 (99%)
Strand = Plus / Minus
Query: 1 gaaggccgcgcctctcggaggaagtgtgtcctttaattgcagtgctcagatctccgtcgc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 138618115 gaaggccgcgcctctcggaggaagtgtgtcctttaattgcagcgctcagatctccgtcgc 138618056
Query: 61 atcggcttccaggagcgggcagcgggcgccgacgggagtggcagtccctcccgccggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138618055 atcggcttccaggagcgggcagcgggcgccgacgggagtggcagtccctcccgccggggg 138617996
Query: 121 agtgggccgggcagccgcgcgctcagcatcctcctgcaccttccgtcgccatgggcggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138617995 agtgggccgggcagccgcgcgctcagcatcctcctgcaccttccgtcgccatgggcggct 138617936
Query: 181 cggcctccagccagttggacgagggcaagtgcgcctacatccgagg 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138617935 cggcctccagccagttggacgagggcaagtgcgcctacatccgagg 138617890
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 1154 agcgatggtggcccagccagcagagagtagctgtgcggagagcgtgcagccattcctggc 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138471041 agcgatggtggcccagccagcagagagtagctgtgcggagagcgtgcagccattcctggc 138470982
Query: 1214 atccattctggaggagctcatgggaccagtgagctcaggattcagtgaagtacgctcact 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138470981 atccattctggaggagctcatgggaccagtgagctcaggattcagtgaagtacgctcact 138470922
Query: 1274 ctttgaaaaagaagtagatgaacttagccagaactttcagaccaccaaagacggtgcccg 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138470921 ctttgaaaaagaagtagatgaacttagccagaactttcagaccaccaaagacggtgcccg 138470862
Query: 1334 gctaaaggag 1343
||||||||||
Sbjct: 138470861 gctaaaggag 138470852
Score = 335 bits (169), Expect = 7e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 603 gcaaccagcgagaaagagaacacgcagccctttgtggctctgcccaaggaattcccggtg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138536170 gcaaccagcgagaaagagaacacgcagccctttgtggctctgcccaaggaattcccggtg 138536111
Query: 663 tacctgtggcaaccattcctcagacacagctacttctgcttccaggaggctgccgagcag 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138536110 tacctgtggcaaccattcctcagacacagctacttctgcttccaggaggctgccgagcag 138536051
Query: 723 aagaagttcagtgctctcctgacggactgcatcagacacctaaatcatg 771
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138536050 aagaagttcagtgctctcctgacggactgcatcagacacctaaatcatg 138536002
Score = 325 bits (164), Expect = 7e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1342 agcttctggaccagcttatgaatcttccactggattctgtgaagatggaaccatgttatg 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138467293 agcttctggaccagcttatgaatcttccactggattctgtgaagatggaaccatgttatg 138467234
Query: 1402 ataaagtcaacctgcttcaagagcacctgcaggatctcaagagccgcttcagattccccc 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138467233 ataaagtcaacctgcttcaagagcacctgcaggatctcaagagccgcttcagattccccc 138467174
Query: 1462 acatcgacctggtgatccagaggacacagaactacatgcaagag 1505
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138467173 acatcgacctggtgatccagaggacacagaactacatgcaagag 138467130
Score = 323 bits (163), Expect = 3e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 993 ctcctcgaagaggcctacaacctggtccagcatcaagtttcagaaggattaagtgccttg 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138476282 ctcctcgaagaggcctacaacctggtccagcatcaagtttcagaaggattaagtgccttg 138476223
Query: 1053 aaggaggaatgccgggccctgaccaaggacctggaaggaaccatccgttcagacatggat 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138476222 aaggaggaatgccgggccctgaccaaggacctggaaggaaccatccgttcagacatggat 138476163
Query: 1113 cagattgtgacctcaaagaactttttaatcggaaagatcaaag 1155
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138476162 cagattgtgacctcaaagaactttttaatcggaaagatcaaag 138476120
Score = 270 bits (136), Expect = 4e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 354 aagccaccactggagcctggaactattttgtatgaagcagaactatcgcagtttgctgag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138548778 aagccaccactggagcctggaactattttgtatgaagcagaactatcgcagtttgctgag 138548719
Query: 414 gacataaagaaatggaaggagagatatgtcgtggttaaaaatgattttgctgtggaaagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138548718 gacataaagaaatggaaggagagatatgtcgtggttaaaaatgattttgctgtggaaagc 138548659
Query: 474 tatgagaacaaagagg 489
||||||||||||||||
Sbjct: 138548658 tatgagaacaaagagg 138548643
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 224 agggaaaactgaggctgttatcaaaaacttcagtccctactacagtcgccagtactccgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138552793 agggaaaactgaggctgttatcaaaaacttcagtccctactacagtcgccagtactccgt 138552734
Query: 284 ggctttctgcaatcacgtacgcagtgaagtagaacagcaaagagattcaacatcgcaatt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138552733 ggctttctgcaatcacgtacgcagtgaagtagaacagcaaagagattcaacatcgcaatt 138552674
Query: 344 tttgaagaccaag 356
|||||||||||||
Sbjct: 138552673 tttgaagaccaag 138552661
Score = 232 bits (117), Expect = 8e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 771 gattacacgaagcagatgacgtttgaagcccaagcctttttagaagctgtgcagttcttc 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138481862 gattacacgaagcagatgacgtttgaagcccaagcctttttagaagctgtgcagttcttc 138481803
Query: 831 cgacaagagaaaggacactatggctcatgggagatgaccactggggatgaaatccag 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138481802 cgacaagagaaaggacactatggctcatgggagatgaccactggggatgaaatccag 138481746
Score = 232 bits (117), Expect = 8e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 487 aggcctatcagaaaggagctccccctaaatgtcgaattcttccagctggtgccaaggtgt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138542160 aggcctatcagaaaggagctccccctaaatgtcgaattcttccagctggtgccaaggtgt 138542101
Query: 547 taacctcagaagatgaatacaatttattatctgaccggcatttcccagaccctattg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138542100 taacctcagaagatgaatacaatttattatctgaccggcatttcccagaccctattg 138542044
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1504 agctcatggagaatgccgtgttcactttcgagcagttgctctccccacatctccaaggag 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138465582 agctcatggagaatgccgtgttcactttcgagcagttgctctccccacatctccaaggag 138465523
Query: 1564 aggcctccaaaaccactgtcgccattgagaaggttaaactccgggtcttaaag 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138465522 aggcctccaaaaccactgtcgccattgagaaggttaaactccgggtcttaaag 138465470
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1725 gaacttcagaaatacgagcagttcatttttgcagatcacacccatatgatccacgttgag 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138458935 gaacttcagaaatacgagcagttcatttttgcagatcacacccatatgatccacgttgag 138458876
Query: 1785 aatgtctacgaggagattttacatcagatcctccttgatgaaaccctgaaag 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138458875 aatgtctacgaggagattttacatcagatcctccttgatgaaaccctgaaag 138458824
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1615 agcaatatgattatgacagcagcaccatccggaagaggatatttcaagaggcgctggttc 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138463258 agcaatatgattatgacagcagcaccatccggaagaggatatttcaagaggcgctggttc 138463199
Query: 1675 aaatcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccag 1725
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138463198 aaatcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccag 138463148
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 885 cagatcctgagtaacctggtgatggaggagctcctgccaacccttcagacagacctcctg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138476691 cagatcctgagtaacctggtgatggaggagctcctgccaacccttcagacagacctcctg 138476632
Query: 945 cctaaaatgagggggaagaagaacgacaggaagcgggcctggttcggt 992
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138476631 cctaaaatgagggggaagaagaacgacaggaagcgggcctggttcggt 138476584
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 78,569,939
Number of extensions: 586
Number of successful extensions: 586
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 15
Length of query: 2572
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2550
Effective length of database: 2,808,408,574
Effective search space: 7161441863700
Effective search space used: 7161441863700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)