Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178211.1| protein Niban [Bos taurus]. 446 e-125
Alignment gi|XP_002694293.1| PREDICTED: family with sequence similarity 1... 446 e-125
Alignment gi|XP_002691672.1| PREDICTED: niban protein-like [Bos taurus]. 72 3e-12
Alignment gi|XP_869626.3| PREDICTED: niban protein isoform 1 [Bos taurus]. 72 3e-12
>ref|NP_001178211.1| protein Niban [Bos taurus].
Length = 933
Score = 446 bits (1148), Expect = e-125
Identities = 251/431 (58%), Positives = 284/431 (65%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPT+QKALAS+CKPELQKYEQ+IFADHT+MIHVENVYEEILHQILLDE+LKVIKEAA+L
Sbjct: 504 TLPTLQKALASVCKPELQKYEQYIFADHTNMIHVENVYEEILHQILLDESLKVIKEAAIL 563
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASA+LPG +SEI+SNEVFQ
Sbjct: 564 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAVLPGVSESEILSNEVFQEAG 623
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
LA+ E GD Q+I SS+D P VNLVA E TAG LGTH S
Sbjct: 624 EMKQPEVPSPLAREEGLSLPVSSPPPDGDRQVIDSSIDGPVVNLVATEVTAGALGTHLSQ 683
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
SA+GSLKELR+LLTVT EV ES L++E+DT+EE LVPQ
Sbjct: 684 PELEETPEDREPTQEDAEPRSAAGSLKELRNLLTVTAEVTGESAVLEVEKDTHEEALVPQ 743
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXXXXXXXXXXXXXC 902
++EKEEE TQ+ T A QA+AS QDNC E++V E E H C
Sbjct: 744 DIEKEEEATQIDTEASQASASGQDNCEESEVGEGEAHGPTPKAEASGVELGEFPDAQPTC 803
Query: 903 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCMFSS 1082
G LSEG R P PTEE EAG + ELT ASGL E C+F S
Sbjct: 804 GGLSEGARGPDPTEEPGEAGELTESELTGDASGLGTLEGGGPVCSVEAEAVSLEACVFRS 863
Query: 1083 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ 1262
D +SPRESQ+SV EE VGG CSTA A S DA ER+A VH+C WVVEN N T+TL++Q
Sbjct: 864 DSISPRESQVSVEEEAVGGSCSTAQPATSEDAQERKADPVHECQWVVENVAN-TDTLDTQ 922
Query: 1263 PEGPPAQPWEE 1295
E PP P EE
Sbjct: 923 REDPPEPPSEE 933
>ref|XP_002694293.1| PREDICTED: family with sequence similarity 129, member A [Bos
taurus].
Length = 933
Score = 446 bits (1148), Expect = e-125
Identities = 251/431 (58%), Positives = 284/431 (65%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPT+QKALAS+CKPELQKYEQ+IFADHT+MIHVENVYEEILHQILLDE+LKVIKEAA+L
Sbjct: 504 TLPTLQKALASVCKPELQKYEQYIFADHTNMIHVENVYEEILHQILLDESLKVIKEAAIL 563
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASA+LPG +SEI+SNEVFQ
Sbjct: 564 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAVLPGVSESEILSNEVFQEAG 623
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
LA+ E GD Q+I SS+D P VNLVA E TAG LGTH S
Sbjct: 624 EMKQPEVPSPLAREEGLSLPVSSPPPDGDRQVIDSSIDGPVVNLVATEVTAGALGTHLSQ 683
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
SA+GSLKELR+LLTVT EV ES L++E+DT+EE LVPQ
Sbjct: 684 PELEETPEDREPTQEDAEPRSAAGSLKELRNLLTVTAEVTGESAVLEVEKDTHEEALVPQ 743
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXXXXXXXXXXXXXC 902
++EKEEE TQ+ T A QA+AS QDNC E++V E E H C
Sbjct: 744 DIEKEEEATQIDTEASQASASGQDNCEESEVGEGEAHGPTPKAEASGVELGEFPDAQPTC 803
Query: 903 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCMFSS 1082
G LSEG R P PTEE EAG + ELT ASGL E C+F S
Sbjct: 804 GGLSEGARGPDPTEEPGEAGELTESELTGDASGLGTLEGGGPVCSVEAEAVSLEACVFRS 863
Query: 1083 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ 1262
D +SPRESQ+SV EE VGG CSTA A S DA ER+A VH+C WVVEN N T+TL++Q
Sbjct: 864 DSISPRESQVSVEEEAVGGSCSTAQPATSEDAQERKADPVHECQWVVENVAN-TDTLDTQ 922
Query: 1263 PEGPPAQPWEE 1295
E PP P EE
Sbjct: 923 REDPPEPPSEE 933
>ref|XP_002691672.1| PREDICTED: niban protein-like [Bos taurus].
Length = 745
Score = 71.6 bits (174), Expect = 3e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
T+P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 500 TIPFLLKKLAPTCKSELSRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 559
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D++ +
Sbjct: 560 RKHNLYRDSVVM 571
>ref|XP_869626.3| PREDICTED: niban protein isoform 1 [Bos taurus].
Length = 745
Score = 71.6 bits (174), Expect = 3e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
T+P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 500 TIPFLLKKLAPTCKSELSRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 559
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D++ +
Sbjct: 560 RKHNLYRDSVVM 571
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 88,888,811
Number of extensions: 2414471
Number of successful extensions: 9463
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9403
Number of HSP's successfully gapped: 4
Length of query: 804
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 694
Effective length of database: 14,041,694
Effective search space: 9744935636
Effective search space used: 9744935636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537163.2| PREDICTED: similar to niban protein isoform 2 [... 413 e-115
Alignment gi|XP_851563.1| PREDICTED: similar to niban protein [Canis fami... 73 1e-12
>ref|XP_537163.2| PREDICTED: similar to niban protein isoform 2 [Canis familiaris].
Length = 934
Score = 413 bits (1062), Expect = e-115
Identities = 243/434 (55%), Positives = 269/434 (61%), Gaps = 3/434 (0%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYEEILHQ LLDETLKVIKEAA+L
Sbjct: 504 TLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYEEILHQSLLDETLKVIKEAAIL 563
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTD+KT AGSNQASPARRASA+LPG DSE +SNEVFQ
Sbjct: 564 KKHNLFEDNMALPSESVSSLTDIKTSAGSNQASPARRASALLPGVSDSETLSNEVFQESG 623
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
LAK E G GQ+IIS MD P V+LV AEDTAG LGTHSS
Sbjct: 624 EKKQPGVSSPLAKEESLSFPVPTPPPVGTGQMIISGMDGPLVDLVTAEDTAGALGTHSSE 683
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
+SAS SLKELR+LLTVTIEVP ES L+IEEDTNEETL PQ
Sbjct: 684 LEFGGAPKDGEPTHEKPESSSASSSLKELRNLLTVTIEVPVESSTLEIEEDTNEETLAPQ 743
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXXXXXXXXXXXXXC 902
EMEK EETT T A+QAAASSQD+C E+++ RE H
Sbjct: 744 EMEKLEETTPTYTEANQAAASSQDSCEESEISGREAHPPPLEAEASREELGGFLGAELAR 803
Query: 903 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCMFSS 1082
L+ G SP PTE+Q EAG P +GE+ +S LD PQE C +
Sbjct: 804 EGLNPGASSPDPTEQQAEAGEPTEGEIQGRSSSLDAQDERGAASIVEDEARPQEDCTSGA 863
Query: 1083 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ 1262
P ES +SV EE +GG S SV E +AA VH+C WVVEN PN L
Sbjct: 864 HHTCPSESPVSV-EETLGGTSSMTQATTSVKTEEIKAAGVHECQWVVENAPNI--DLLGS 920
Query: 1263 P---EGPPAQPWEE 1295
P E P QP EE
Sbjct: 921 PDLGESTPEQPSEE 934
>ref|XP_851563.1| PREDICTED: similar to niban protein [Canis familiaris].
Length = 745
Score = 72.8 bits (177), Expect = 1e-12
Identities = 32/72 (44%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
T+P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 500 TIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 559
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D+M +
Sbjct: 560 RKHNLYRDSMVM 571
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 92,135,077
Number of extensions: 2410009
Number of successful extensions: 9966
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9824
Number of HSP's successfully gapped: 2
Length of query: 804
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 693
Effective length of database: 15,174,208
Effective search space: 10515726144
Effective search space used: 10515726144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_443198.1| protein Niban isoform 2 [Homo sapiens]. 352 1e-96
Alignment gi|NP_073744.2| niban-like protein 1 isoform 1 [Homo sapiens]. 71 4e-12
Alignment gi|NP_001030611.1| niban-like protein 1 isoform 2 [Homo sapiens]. 71 4e-12
>ref|NP_443198.1| protein Niban isoform 2 [Homo sapiens].
Length = 928
Score = 352 bits (902), Expect = 1e-96
Identities = 216/412 (52%), Positives = 245/412 (59%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYEEILHQILLDETLKVIKEAA+L
Sbjct: 504 TLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYEEILHQILLDETLKVIKEAAIL 563
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTDLK P GSNQASPARRASAILPG SE +SNEVFQ
Sbjct: 564 KKHNLFEDNMALPSESVSSLTDLKPPTGSNQASPARRASAILPGVLGSETLSNEVFQESE 623
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
LAKGE G Q+IIS +DDP VN VA EDTAG GT SS
Sbjct: 624 EEKQPEVPSSLAKGESLSLPGPSPPPDGTEQVIISRVDDPVVNPVATEDTAGLPGTCSSE 683
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
+ASGSLK LR LLT ++EVP +S + +EEDTN E+ VPQ
Sbjct: 684 LEFGGTLEDEEPAQEEPEPITASGSLKALRKLLTASVEVPVDSAPV-MEEDTNGESHVPQ 742
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXXXXXXXXXXXXXC 902
E E+EEE QAAA DNC E++V ERE
Sbjct: 743 ENEEEEEKE-----PSQAAAIHPDNCEESEVSEREAQ------PPCPEAHGEELGGFPEV 791
Query: 903 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCMFSS 1082
G + S G TEE + GP +GEL A L QEGC S
Sbjct: 792 GSPASPPASGGLTEEPL---GPMEGELPGEACTLTAHEGRGGKCTEEGDASQQEGCTLGS 848
Query: 1083 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPN 1238
DP+ ESQ+S +E +GG+ S A ASV+A E + A +H+C WVVE+ PN
Sbjct: 849 DPICLSESQVSEEQEEMGGQSSAAQATASVNAEEIKVARIHECQWVVEDAPN 900
>ref|NP_073744.2| niban-like protein 1 isoform 1 [Homo sapiens].
Length = 746
Score = 71.2 bits (173), Expect = 4e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
++P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 500 SIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 559
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D+M +
Sbjct: 560 RKHNLYRDSMVM 571
>ref|NP_001030611.1| niban-like protein 1 isoform 2 [Homo sapiens].
Length = 733
Score = 71.2 bits (173), Expect = 4e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
++P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 487 SIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 546
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D+M +
Sbjct: 547 RKHNLYRDSMVM 558
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 90,459,548
Number of extensions: 2356620
Number of successful extensions: 9583
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9512
Number of HSP's successfully gapped: 3
Length of query: 804
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 693
Effective length of database: 14,638,160
Effective search space: 10144244880
Effective search space used: 10144244880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071301.2| protein Niban [Mus musculus]. 294 2e-79
Alignment gi|NP_666231.1| niban-like protein 1 [Mus musculus]. 74 7e-13
>ref|NP_071301.2| protein Niban [Mus musculus].
Length = 926
Score = 294 bits (753), Expect = 2e-79
Identities = 201/442 (45%), Positives = 241/442 (54%), Gaps = 13/442 (2%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYEEIL++ILLDETLKVI EAA+L
Sbjct: 503 TLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYEEILYEILLDETLKVITEAAIL 562
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTDLKT GSNQASPARR SAILPG PD+E+ SNEVFQ
Sbjct: 563 KKHNLFEDNMALPSESVSSLTDLKTAMGSNQASPARRVSAILPGAPDNELPSNEVFQEPE 622
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
GGDGQ+ S+D A + E+TAG L +H S
Sbjct: 623 EKKEQPGVPG-----SLAISASSCPSGGDGQV---SVDHSAGGPLTVENTAGPLSSHLSE 674
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
++ GSLKEL+ LLTVT+ V ES + +E D + T VPQ
Sbjct: 675 VEAGGTLKDEEPTCQSPEPSAVPGSLKELKKLLTVTVSV--ESAPV-VENDIHNGTPVPQ 731
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERET---HXXXXXXXXXXXXXXXXXXXX 893
E KEEE +++ A AA QD+C E +V E+E
Sbjct: 732 ENIKEEE-SKIHPEASHPAAIQQDSCEEREVREKEAQPLEAEAPGVDLGILPEGRGSTSQ 790
Query: 894 XXCGELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCM 1073
G L+E T PGP EE EA P + L S D PQE
Sbjct: 791 STSGGLTENTSCPGPIEEPFEAQEPAEKVLPAIVSTED-SPQAGGEAEHSVTVTPQEDAT 849
Query: 1074 FSSDPLSPRES----QMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNT 1241
SS+P+ P ES Q S +E++GGE S+AL +D + H H C W+VE D +
Sbjct: 850 LSSNPICPMESNEVAQASGDQEVLGGEDSSAL---GMDTEQVNDTHEHACQWLVE-DTLS 905
Query: 1242 TETLE------SQPEGPPAQPW 1289
T+ L S PE P++ W
Sbjct: 906 TDILAVHDFDVSSPE-QPSEEW 926
>ref|NP_666231.1| niban-like protein 1 [Mus musculus].
Length = 749
Score = 73.6 bits (179), Expect = 7e-13
Identities = 33/72 (45%), Positives = 49/72 (68%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
T+P + K LA CK EL ++++ IF D I VEN YEE++ Q ++ + L+ +KEAAV
Sbjct: 500 TIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQ 559
Query: 183 KKHNLFEDNMAL 218
+KHNL+ D+M L
Sbjct: 560 RKHNLYRDSMVL 571
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,622,854
Number of extensions: 1976909
Number of successful extensions: 8149
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8065
Number of HSP's successfully gapped: 2
Length of query: 804
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 694
Effective length of database: 12,313,599
Effective search space: 8545637706
Effective search space used: 8545637706
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230148.1| protein Niban-like [Sus scrofa]. 667 0.0
>ref|NP_001230148.1| protein Niban-like [Sus scrofa].
Length = 934
Score = 667 bits (1721), Expect = 0.0
Identities = 349/431 (80%), Positives = 349/431 (80%)
Frame = +3
Query: 3 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 182
TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL
Sbjct: 504 TLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYEEILHQILLDETLKVIKEAAVL 563
Query: 183 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQXXX 362
KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQ
Sbjct: 564 KKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEVFQESG 623
Query: 363 XXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSX 542
LAKGE GGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSS
Sbjct: 624 EKKESGVSSSLAKGESLPSPVPSPPPGGDGQLIISSMDDPAVNLVAAEDTAGDLGTHSSE 683
Query: 543 XXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 722
TSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ
Sbjct: 684 LECEETPEDQEPPQEKPEPTSASGSLKELRDLLTVTIEVPAESGKLKIEEDTNEETLVPQ 743
Query: 723 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXXXXXXXXXXXXXC 902
EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETH C
Sbjct: 744 EMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHPPAPEAEAGEAELGALPEAQPAC 803
Query: 903 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXXXXXXXXXXXXXXPQEGCMFSS 1082
GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLD PQEGCMFSS
Sbjct: 804 GELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDALGGEGAVCAVEAEAVPQEGCMFSS 863
Query: 1083 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ 1262
DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ
Sbjct: 864 DPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAHVHQCPWVVENDPNTTETLESQ 923
Query: 1263 PEGPPAQPWEE 1295
PEGPPAQPWEE
Sbjct: 924 PEGPPAQPWEE 934
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,016,417
Number of extensions: 1664484
Number of successful extensions: 6123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6094
Number of HSP's successfully gapped: 1
Length of query: 804
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 697
Effective length of database: 8,679,953
Effective search space: 6049927241
Effective search space used: 6049927241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007513
(2414 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 3632 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 3632 bits (1832), Expect = 0.0
Identities = 1936/1985 (97%), Gaps = 1/1985 (0%)
Strand = Plus / Minus
Query: 158 agtgataaaggaagctgctgtcctgaagaaacacaacttatttgaagacaacatggccct 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456835 agtgataaaggaagctgctgtcctgaagaaacacaacttatttgaagacaacatggccct 138456776
Query: 218 gcccagcgaaagcgtgtccagcttaactgatctaaaaactcctgcagggtccaaccaggc 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 138456775 gcccagcgaaagcgtgtccagcttaactgatctaaaaactcctgcagggtccaatcaggc 138456716
Query: 278 cagccctgccaggagagcctctgccattctgccaggcggtccagatagtgagatcgtgag 337
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456715 cagccctgc-aggagagcctctgccattctgccaggcggtccagatagtgagatcgtgag 138456657
Query: 338 taatgaggtattccaggagtcaggggaaaagaaggagtctggggtctccagttctttggc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456656 taatgaggtattccaggagtcaggggaaaagaaggagtctggggtctccagttctttggc 138456597
Query: 398 caaaggagaaagccttccttcccctgtgcccagccctcccccaggcggggacgggcagct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456596 caaaggagaaagccttccttcccctgtgcccagccctcccccaggcggggacgggcagct 138456537
Query: 458 catcatttcaagcatggatgaccctgctgtgaatcttgtggctgcagaggacacagcagg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456536 catcatttcaagcatggatgaccctgctgtgaatcttgtggctgcagaggacacagcagg 138456477
Query: 518 agacctgggcacacactcatcagagctggagtgtgaggagactcctgaggaccaagaann 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456476 agacctgggcacacactcatcagagctggagtgtgaggagactcctgaggaccaagaacc 138456417
Query: 578 nnnnnaggaaaagcccgagcccacctctgcctcaggctccttgaaggaactcagagacct 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456416 cccccaggaaaagcccgagcccacctctgcctcaggctccttgaaggaactcagagacct 138456357
Query: 638 gttgacagtgaccattgaagtaccagcggagtctggcaagctcaagattgaagaagatac 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456356 gttgacagtgaccattgaagtaccagcggagtctggcaagctcaagattgaagaagatac 138456297
Query: 698 aaatgaggagaccctggttccccaggaaatggaaaaagaagaggaaacaacccaagtctg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456296 aaatgaggagaccctggttccccaggaaatggaaaaagaagaggaaacaacccaagtctg 138456237
Query: 758 cacaggggcccatcaagcagctgcctccagtcaggacaactgtgcagaaaaccaagtgca 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456236 cacaggggcccatcaagcagctgcctccagtcaggacaactgtgcagaaaaccaagtgca 138456177
Query: 818 tgagagagagacccatcctcctgctccagaggccgaggcgggggaggcagagttgggggc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456176 tgagagagagacccatcctcctgctccagaggccgaggcgggggaggcagagttgggggc 138456117
Query: 878 ccttccagaggctcagccagcctgcggggagctcagcgagggcacccgcagcccaggccc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456116 ccttccagaggctcagccagcctgcggggagctcagcgagggcacccgcagcccaggccc 138456057
Query: 938 cacagaggagcaagtagaggccggggggccccccaaaggggagcttacagagggggcttc 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138456056 cacagaggagcaagtagaggccggggggccccccaaaggggagcttacagagggggcttc 138455997
Query: 998 cggactggatgcccttggaggagaaggggccgtgtgtgctgtcgaggctgaggctgtgcc 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455996 cggactggatgcccttggaggagaaggggccgtgtgtgctgtcgaggctgaggctgtgcc 138455937
Query: 1058 ccaagaaggttgcatgttcagttcggaccccctcagccccagggagagccagatgtctgt 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455936 ccaagaaggttgcatgttcagttcggaccccctcagccccagggagagccagatgtctgt 138455877
Query: 1118 gggagaagaattggtgggaggggagtgcagcacagccctggatgctgccagcgtggatgc 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455876 gggagaagaattggtgggaggggagtgcagcacagccctggatgctgccagcgtggatgc 138455817
Query: 1178 aggggagagggaggctgcccatgttcaccagtgtccgtgggtggttgagaatgatccaaa 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455816 aggggagagggaggctgcccatgttcaccagtgtccgtgggtggttgagaatgatccaaa 138455757
Query: 1238 caccaccgagaccctggagtcacagccagagggtcccccagcacagccctgggaggagtg 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455756 caccaccgagaccctggagtcacagccagagggtcccccagcacagccctgggaggagtg 138455697
Query: 1298 aaaggggcagtttggcaaaagcctttctctgaacaaactcagacaaaagaatatagctaa 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455696 aaaggggcagtttggcaaaagcctttctctgaacaaactcagacaaaagaatatagctaa 138455637
Query: 1358 gggtacacgtaggggttgcatacacgtggttaccnnnnnnnnnnnnnnnnnnnnnnnngt 1417
|||||||||||||||||||||||||||||||||| ||
Sbjct: 138455636 gggtacacgtaggggttgcatacacgtggttaccaaaagaaaaagaaaaaaaaaaaaagt 138455577
Query: 1418 ataaatacttaatttgtagaatgaagccagaggcaatgcacacagggcgtgcgcactgag 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455576 ataaatacttaatttgtagaatgaagccagaggcaatgcacacagggcgtgcgcactgag 138455517
Query: 1478 gcaaacctttgtggaattgaactgttccaccatgaattattgctttagcattttaatagg 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455516 gcaaacctttgtggaattgaactgttccaccatgaattattgctttagcattttaatagg 138455457
Query: 1538 aattacaaaggtaatgcagtgtgtgggctaggaggcagctgagggcgtgcagggagtgaa 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455456 aattacaaaggtaatgcagtgtgtgggctaggaggcagctgagggcgtgcagggagtgaa 138455397
Query: 1598 gtgaaggtggacaaaacagtaggagcattctgcacattttcttcaaatgcactttaaggc 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455396 gtgaaggtggacaaaacagtaggagcattctgcacattttcttcaaatgcactttaaggc 138455337
Query: 1658 tttttaannnnnnnnngtaagaatgcaaatgtatactgtacatccggctttacctcccac 1717
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455336 tttttaatttttttttgtaagaatgcaaatgtatactgtacatccggctttacctcccac 138455277
Query: 1718 tctgccaacctcaccatctcttaaggactcagcattcatccacagtcaggctggaggaag 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455276 tctgccaacctcaccatctcttaaggactcagcattcatccacagtcaggctggaggaag 138455217
Query: 1778 gggaaggaatgaacaccagannnnnnntgctgtgggccaccccacagagcctgaggcatc 1837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138455216 gggaaggaatgaacaccagaccccccctgctgtgggccaccccacagagcctgaggcatc 138455157
Query: 1838 ctgggggaggctgcgtgaaacaaaggacggttgaggtgcgtgggactgtctgggcctgtt 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455156 ctgggggaggctgcgtgaaacaaaggacggttgaggtgcgtgggactgtctgggcctgtt 138455097
Query: 1898 gctaattctgctatccatttcttattaattaatcttgttaattctcattaattaatcact 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455096 gctaattctgctatccatttcttattaattaatcttgttaattctcattaattaatcact 138455037
Query: 1958 ttttagacaaagtccgatgagccaaggaaatttccttggcatgtttaagcctgaaagcat 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138455036 ttttagacaaagtccgatgagccaaggaaatttccttggcatgtttaagcctgaaagcat 138454977
Query: 2018 tccaaattagtcttagatggtgcagagaaagagcttagctaaattatcaagcctaaagcc 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138454976 tccaaattagtcttagatggtgcagagaaagagcttagctaaattatcaagcctaaagcc 138454917
Query: 2078 tgccaattaaacaaacattatttgaacagctattctacgccacacgctgtattaggcaca 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138454916 tgccaattaaacaaacattatttgaacagctattctacgccacacgctgtattaggcaca 138454857
Query: 2138 gtaac 2142
|||||
Sbjct: 138454856 gtaac 138454852
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 2178 tacttgtctagcataaattaaaaggcccaaagaatttaatctaaaagaaaaaatatggca 2237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138454818 tacttgtctagcataaattaaaaggcccaaagaatttaatctaaaagaaaaaatatggca 138454759
Query: 2238 attttcaaaccatgacaatttcacctcttcccattgaaacagtcctggtttattcccagg 2297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138454758 attttcaaaccatgacaatttcacctcttcccattgaaacagtcctggtttattcccagg 138454699
Query: 2298 agggaataaagggcataaatgaataaaatgagt 2330
|||||||||||||||||||||||||||||||||
Sbjct: 138454698 agggaataaagggcataaatgaataaaatgagt 138454666
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 48 gaacttcagaaatacgagcagttcatttttgcagatcacacccatatgatccacgttgag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138458935 gaacttcagaaatacgagcagttcatttttgcagatcacacccatatgatccacgttgag 138458876
Query: 108 aatgtctacgaggagattttacatcagatcctccttgatgaaaccctgaaag 159
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138458875 aatgtctacgaggagattttacatcagatcctccttgatgaaaccctgaaag 138458824
Score = 95.6 bits (48), Expect = 1e-16
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1 tcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccag 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138463195 tcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccag 138463148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 76,995,638
Number of extensions: 824
Number of successful extensions: 824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 6
Length of query: 2414
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2392
Effective length of database: 2,808,408,574
Effective search space: 6717713309008
Effective search space used: 6717713309008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)