Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068632.1| beta-hexosaminidase subunit alpha precursor ... 965 0.0
Alignment gi|NP_001069978.2| beta-hexosaminidase subunit beta preproprote... 604 e-173
Alignment gi|XP_002696307.1| PREDICTED: hexosaminidase B (beta polypeptid... 604 e-173
Alignment gi|XP_001787814.1| PREDICTED: hexosaminidase B [Bos taurus]. 604 e-173
Alignment gi|XP_001254509.2| PREDICTED: hexosaminidase B preproprotein-li... 391 e-109
Alignment gi|XP_002696308.1| PREDICTED: hexosaminidase B preproprotein-li... 189 7e-48
>ref|NP_001068632.1| beta-hexosaminidase subunit alpha precursor [Bos taurus].
Length = 529
Score = 965 bits (2495), Expect = 0.0
Identities = 457/506 (90%), Positives = 477/506 (94%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WPWPQYI+TS+ YTI P +FQFQYH SSAAQVGCSVLDEAFQRYRDLLFGSV F H
Sbjct: 24 WPWPQYIQTSELRYTIFPQSFQFQYHLSSAAQVGCSVLDEAFQRYRDLLFGSVAFRFPHP 83
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+EK H SEKNSLVVLVVTPGCDQ PSL SVENYTLTINDEQ LLSETVWGALRGLETFS
Sbjct: 84 IEKRHTSEKNSLVVLVVTPGCDQFPSLGSVENYTLTINDEQSLLLSETVWGALRGLETFS 143
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLIW+SPEGTFY+N+T+IEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW
Sbjct: 144 QLIWRSPEGTFYVNKTDIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 203
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
HLVDDSSFPYESFTFP+LTKKGSYNP+THIYTA+DVKEVIEYARLRGIRVLAEFDTPGHT
Sbjct: 204 HLVDDSSFPYESFTFPELTKKGSYNPATHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT 263
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
SWGPGVPGLLTPCYSGS PSGTFGPVNP LN TYEFMSTFF EIS+VFPDFYLHLGGDE
Sbjct: 264 LSWGPGVPGLLTPCYSGSHPSGTFGPVNPALNNTYEFMSTFFLEISTVFPDFYLHLGGDE 323
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDFTCWKSNPDIQ FMK+KGFG DFKKLESFYIQTLL IVS YGKGYVVWQEVFDNKVKV
Sbjct: 324 VDFTCWKSNPDIQAFMKKKGFGDDFKKLESFYIQTLLDIVSAYGKGYVVWQEVFDNKVKV 383
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
RPDTIIQVWREEIPVKY+KE+ LVT AGFRALLSAPWYLNHITYGPDWKE+Y+VEPLAFE
Sbjct: 384 RPDTIIQVWREEIPVKYVKELALVTRAGFRALLSAPWYLNHITYGPDWKEIYLVEPLAFE 443
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
G+PEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNK V+NLDFAFKRL HF
Sbjct: 444 GSPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKMVSNLDFAFKRLAHF 503
Query: 1552 RCELLRRGVQAQPLSVGYCDVEFEQT 1629
RCELLRRGVQAQPLSVGYCD+EFEQT
Sbjct: 504 RCELLRRGVQAQPLSVGYCDMEFEQT 529
>ref|NP_001069978.2| beta-hexosaminidase subunit beta preproprotein [Bos taurus].
Length = 537
Score = 604 bits (1558), Expect = e-173
Identities = 284/502 (56%), Positives = 363/502 (72%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P +KT+ + + P F F + +S A C+VL EAF+RY D +FG H H
Sbjct: 37 WPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFYKWHHGHN 96
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ + V +++ P CD PS+ S E+YTL + L + VWG LRGLETFS
Sbjct: 97 KIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGVLRGLETFS 156
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLI++ GTF N + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA+NKFNV HW
Sbjct: 157 QLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHW 216
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S +FP+L+ KGSY+ S H+YT DV+ VIEYARLRGIRVL EFD+PGHT
Sbjct: 217 HIVDDQSFPYQSISFPELSNKGSYSLS-HVYTPNDVRTVIEYARLRGIRVLPEFDSPGHT 275
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
+SWG G LLTPCY +PSGTFGP+NP LN TY F+S F EIS+VFPD ++HLGGDE
Sbjct: 276 ESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDEFIHLGGDE 335
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
V+F CW+SNP + NFM KGFGK+FKKL+SFY+Q +L ++S K +VWQEV+D++ K+
Sbjct: 336 VNFNCWESNPAVLNFMMNKGFGKNFKKLQSFYMQMVLDMISTMKKRSIVWQEVYDDEGKL 395
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
P T++QVW+ + KE+E +T AGF ++SAPWYL+ I YG DW++ Y V+PL F
Sbjct: 396 LPGTVVQVWKMG---DFYKELENITAAGFPVIISAPWYLDVINYGQDWRQYYSVKPLNFA 452
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQK LVIGGEAC+WGEYVD+TNL PRLWPRA AV ERLWS + VT+LD A++RLT
Sbjct: 453 GTPEQKQLVIGGEACIWGEYVDATNLTPRLWPRASAVGERLWSPQEVTDLDDAYRRLTRH 512
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++RRG+ AQPL GYC+ E
Sbjct: 513 RCRMVRRGIAAQPLFTGYCEHE 534
>ref|XP_002696307.1| PREDICTED: hexosaminidase B (beta polypeptide) [Bos taurus].
Length = 537
Score = 604 bits (1558), Expect = e-173
Identities = 284/502 (56%), Positives = 363/502 (72%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P +KT+ + + P F F + +S A C+VL EAF+RY D +FG H H
Sbjct: 37 WPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFYKWHHGHN 96
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ + V +++ P CD PS+ S E+YTL + L + VWG LRGLETFS
Sbjct: 97 KIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGVLRGLETFS 156
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLI++ GTF N + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA+NKFNV HW
Sbjct: 157 QLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHW 216
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S +FP+L+ KGSY+ S H+YT DV+ VIEYARLRGIRVL EFD+PGHT
Sbjct: 217 HIVDDQSFPYQSISFPELSNKGSYSLS-HVYTPNDVRTVIEYARLRGIRVLPEFDSPGHT 275
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
+SWG G LLTPCY +PSGTFGP+NP LN TY F+S F EIS+VFPD ++HLGGDE
Sbjct: 276 ESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDEFIHLGGDE 335
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
V+F CW+SNP + NFM KGFGK+FKKL+SFY+Q +L ++S K +VWQEV+D++ K+
Sbjct: 336 VNFNCWESNPAVLNFMMNKGFGKNFKKLQSFYMQMVLDMISTMKKRSIVWQEVYDDEGKL 395
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
P T++QVW+ + KE+E +T AGF ++SAPWYL+ I YG DW++ Y V+PL F
Sbjct: 396 LPGTVVQVWKMG---DFYKELENITAAGFPVIISAPWYLDVINYGQDWRQYYSVKPLNFA 452
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQK LVIGGEAC+WGEYVD+TNL PRLWPRA AV ERLWS + VT+LD A++RLT
Sbjct: 453 GTPEQKQLVIGGEACIWGEYVDATNLTPRLWPRASAVGERLWSPQEVTDLDDAYRRLTRH 512
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++RRG+ AQPL GYC+ E
Sbjct: 513 RCRMVRRGIAAQPLFTGYCEHE 534
>ref|XP_001787814.1| PREDICTED: hexosaminidase B [Bos taurus].
Length = 537
Score = 604 bits (1558), Expect = e-173
Identities = 284/502 (56%), Positives = 363/502 (72%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P +KT+ + + P F F + +S A C+VL EAF+RY D +FG H H
Sbjct: 37 WPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFYKWHHGHN 96
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ + V +++ P CD PS+ S E+YTL + L + VWG LRGLETFS
Sbjct: 97 KIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGVLRGLETFS 156
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLI++ GTF N + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA+NKFNV HW
Sbjct: 157 QLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHW 216
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S +FP+L+ KGSY+ S H+YT DV+ VIEYARLRGIRVL EFD+PGHT
Sbjct: 217 HIVDDQSFPYQSISFPELSNKGSYSLS-HVYTPNDVRTVIEYARLRGIRVLPEFDSPGHT 275
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
+SWG G LLTPCY +PSGTFGP+NP LN TY F+S F EIS+VFPD ++HLGGDE
Sbjct: 276 ESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDEFIHLGGDE 335
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
V+F CW+SNP + NFM KGFGK+FKKL+SFY+Q +L ++S K +VWQEV+D++ K+
Sbjct: 336 VNFNCWESNPAVLNFMMNKGFGKNFKKLQSFYMQMVLDMISTMKKRSIVWQEVYDDEGKL 395
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
P T++QVW+ + KE+E +T AGF ++SAPWYL+ I YG DW++ Y V+PL F
Sbjct: 396 LPGTVVQVWKMG---DFYKELENITAAGFPVIISAPWYLDVINYGQDWRQYYSVKPLNFA 452
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQK LVIGGEAC+WGEYVD+TNL PRLWPRA AV ERLWS + VT+LD A++RLT
Sbjct: 453 GTPEQKQLVIGGEACIWGEYVDATNLTPRLWPRASAVGERLWSPQEVTDLDDAYRRLTRH 512
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++RRG+ AQPL GYC+ E
Sbjct: 513 RCRMVRRGIAAQPLFTGYCEHE 534
>ref|XP_001254509.2| PREDICTED: hexosaminidase B preproprotein-like [Bos taurus].
Length = 436
Score = 391 bits (1005), Expect = e-109
Identities = 192/366 (52%), Positives = 246/366 (67%), Gaps = 9/366 (2%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P + T+ + P F + +S A C+VL EAF+RY D +FG
Sbjct: 46 WPLPLSVMTTPRLLYLSPRNDFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFY------- 98
Query: 292 VEKWHISEKNSL---------VVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWG 444
KW + N V +++ P CD PS+ S E+YTL + L + VWG
Sbjct: 99 --KWPLGSDNIPREMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWG 156
Query: 445 ALRGLETFSQLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMA 624
LRGLETFSQLI+++ GTF N + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA
Sbjct: 157 VLRGLETFSQLIYQNSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMA 216
Query: 625 YNKFNVFHWHLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVL 804
+NKFNV HWH+VDD SFPY+S +FP+L+ KGSY+ S H+YT DV VIEYARLRGIR+L
Sbjct: 217 FNKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLS-HVYTPNDVHTVIEYARLRGIRIL 275
Query: 805 AEFDTPGHTQSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPD 984
EFD+PGHT SWG G LLTPCY +PSGTFGP+NP LN TY F+S F EIS+VFPD
Sbjct: 276 PEFDSPGHTASWGKGQEDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPD 335
Query: 985 FYLHLGGDEVDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQ 1164
++HLGGDEV+F CWKSNP + FM+ K FGK +KL+SFY+Q +L ++S K +VWQ
Sbjct: 336 EFIHLGGDEVNFNCWKSNPAVLRFMRNKRFGK-IEKLQSFYMQMVLDMISAMKKRSIVWQ 394
Query: 1165 EVFDNK 1182
EV+D++
Sbjct: 395 EVYDDE 400
>ref|XP_002696308.1| PREDICTED: hexosaminidase B preproprotein-like [Bos taurus].
Length = 259
Score = 189 bits (480), Expect = 7e-48
Identities = 96/210 (45%), Positives = 126/210 (60%), Gaps = 9/210 (4%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P + T+ + P F + +S A C+VL EAF+RY D +FG
Sbjct: 46 WPLPLSVMTTPRLLYLSPRNDFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFY------- 98
Query: 292 VEKWHISEKNSL---------VVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWG 444
KW + N V +++ P CD PS+ S E+YTL + L + VWG
Sbjct: 99 --KWPLGSDNIPREMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWG 156
Query: 445 ALRGLETFSQLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMA 624
LRGLETFSQLI++ GTF N + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA
Sbjct: 157 VLRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMA 216
Query: 625 YNKFNVFHWHLVDDSSFPYESFTFPDLTKK 714
+NKFNV HWH+VDD SFPY+S +FP+L+ K
Sbjct: 217 FNKFNVLHWHIVDDQSFPYQSISFPELSNK 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 80,395,759
Number of extensions: 2590279
Number of successful extensions: 11263
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 11177
Number of HSP's successfully gapped: 6
Length of query: 600
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 492
Effective length of database: 14,107,870
Effective search space: 6941072040
Effective search space used: 6941072040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544758.2| PREDICTED: similar to Beta-hexosaminidase alpha... 915 0.0
Alignment gi|XP_535275.2| PREDICTED: similar to Beta-hexosaminidase beta ... 566 e-161
>ref|XP_544758.2| PREDICTED: similar to Beta-hexosaminidase alpha chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase A) [Canis
familiaris].
Length = 529
Score = 915 bits (2364), Expect = 0.0
Identities = 429/506 (84%), Positives = 461/506 (91%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WPWPQYI+TS+ Y I PH FQF+YH SSAAQ GCSVLDEAFQRYRDLLF S +
Sbjct: 24 WPWPQYIQTSEAHYAIFPHDFQFRYHSSSAAQPGCSVLDEAFQRYRDLLFSSRAWYPPEP 83
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
K H EKNSLVVLVVTPGC+QLPSLES+ENYTLTIND+ CFLLSETVWGALRGLETFS
Sbjct: 84 TRKLHALEKNSLVVLVVTPGCNQLPSLESLENYTLTINDDHCFLLSETVWGALRGLETFS 143
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QL+W+SPEG F IN+TEIEDFPRF HRGLLLDTSRHYLPL +I+DTLD MAYNKFNVFHW
Sbjct: 144 QLVWRSPEGMFLINKTEIEDFPRFSHRGLLLDTSRHYLPLTTIMDTLDAMAYNKFNVFHW 203
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
HLVDDSSFPY+S+TFP+LT+KGSYNP+THIYTA+DVK VIEYARLRGIRVLAEFDTPGHT
Sbjct: 204 HLVDDSSFPYDSYTFPELTRKGSYNPATHIYTAQDVKMVIEYARLRGIRVLAEFDTPGHT 263
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
SWGPGVPGLLTPCYSGS PSGTFGPVNP LN TYEFMS+FF E+SSVFPDFYLHLGGDE
Sbjct: 264 LSWGPGVPGLLTPCYSGSHPSGTFGPVNPILNSTYEFMSSFFLEVSSVFPDFYLHLGGDE 323
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDFTCWKSNPDIQNFMK+KGFG DFK+LES+YIQTLL IVS Y KGYVVWQEVFDNKVKV
Sbjct: 324 VDFTCWKSNPDIQNFMKEKGFGSDFKQLESYYIQTLLNIVSAYDKGYVVWQEVFDNKVKV 383
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
RPDTIIQVWREE+PV Y+KEMEL+T AGFRALLSAPWYLNHITYGPDW E+YMVEPL F+
Sbjct: 384 RPDTIIQVWREEMPVHYVKEMELITKAGFRALLSAPWYLNHITYGPDWSEIYMVEPLEFK 443
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
G+P+QKALVIGGEACMWGEYVDSTNL PRLWPRAGAVAERLWSNK VTNLD AFKRLT F
Sbjct: 444 GSPQQKALVIGGEACMWGEYVDSTNLAPRLWPRAGAVAERLWSNKLVTNLDSAFKRLTQF 503
Query: 1552 RCELLRRGVQAQPLSVGYCDVEFEQT 1629
RCELLRRGVQAQPL+VGYC+ EFEQT
Sbjct: 504 RCELLRRGVQAQPLNVGYCEQEFEQT 529
>ref|XP_535275.2| PREDICTED: similar to Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
(Cervical cancer proto-oncogene 7) (HCC-7) [Canis
familiaris].
Length = 570
Score = 566 bits (1460), Expect = e-161
Identities = 263/432 (60%), Positives = 331/432 (76%)
Frame = +1
Query: 316 KNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFSQLIWKSPE 495
K LV +V+ CD P++ S E+Y+L + FL + VWGALRGLETFSQLI++
Sbjct: 142 KQLLVSIVLDSECDLYPNVTSDESYSLVVKAPVAFLKANRVWGALRGLETFSQLIYQDSY 201
Query: 496 GTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHWHLVDDSSF 675
GTF IN I D PRFPHRG+L+DT+RH+LP+ SIL+TLD MA+NKFNV HWH+VDD SF
Sbjct: 202 GTFTINECNIIDSPRFPHRGILIDTARHFLPIKSILETLDAMAFNKFNVLHWHIVDDQSF 261
Query: 676 PYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHTQSWGPGVP 855
PY+S TFP+L+ KGSY+ S H+YT DV VIEYARLRGIRV+ EFD+PGHTQSWG G
Sbjct: 262 PYQSVTFPELSNKGSYSLS-HVYTPTDVHTVIEYARLRGIRVIPEFDSPGHTQSWGKGQK 320
Query: 856 GLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDEVDFTCWKS 1035
LLTPCY+G + S TFGP+NP LN TY F+S F E+S+VFPD ++HLGGDEV+F CW+S
Sbjct: 321 NLLTPCYNGHKQSETFGPINPILNSTYSFLSQLFKEVSAVFPDQFIHLGGDEVEFKCWES 380
Query: 1036 NPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKVRPDTIIQV 1215
NP+I++FMK KGFG+D+KKLESFY+Q +L I S KG +VWQEVFD+ VK++P TI+QV
Sbjct: 381 NPEIRDFMKWKGFGEDYKKLESFYVQKVLDIASTVNKGAIVWQEVFDDHVKLQPGTIVQV 440
Query: 1216 WREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFEGTPEQKAL 1395
W+ + Y +E VT AGF +LSAPWYL+ I+YG DWK Y V+PL F G+PEQK L
Sbjct: 441 WKFQ---SYSEEQAQVTAAGFPVILSAPWYLDWISYGQDWKGYYKVDPLDFSGSPEQKKL 497
Query: 1396 VIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHFRCELLRRG 1575
V+GGEAC+WGEYVD+TNL PRLWPRA A+ ERLWS+ V +L+ A+ RLT RC ++ RG
Sbjct: 498 VMGGEACLWGEYVDATNLTPRLWPRASAIGERLWSHSDVKDLEDAYNRLTVHRCRMVSRG 557
Query: 1576 VQAQPLSVGYCD 1611
+ A+PL GYC+
Sbjct: 558 IAAEPLYTGYCN 569
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 83,779,549
Number of extensions: 2668655
Number of successful extensions: 11430
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11367
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 491
Effective length of database: 15,240,880
Effective search space: 7483272080
Effective search space used: 7483272080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000511.2| beta-hexosaminidase subunit alpha preproprotein... 901 0.0
Alignment gi|NP_000512.1| beta-hexosaminidase subunit beta preproprotein ... 597 e-170
>ref|NP_000511.2| beta-hexosaminidase subunit alpha preproprotein [Homo sapiens].
Length = 529
Score = 901 bits (2329), Expect = 0.0
Identities = 423/506 (83%), Positives = 464/506 (91%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WPWPQ +TSD Y + P+ FQFQY SSAAQ GCSVLDEAFQRYRDLLFGS + +
Sbjct: 24 WPWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYL 83
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
K H EKN LVV VVTPGC+QLP+LESVENYTLTIND+QC LLSETVWGALRGLETFS
Sbjct: 84 TGKRHTLEKNVLVVSVVTPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFS 143
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QL+WKS EGTF+IN+TEIEDFPRFPHRGLLLDTSRHYLPL+SILDTLDVMAYNK NVFHW
Sbjct: 144 QLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHW 203
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
HLVDD SFPYESFTFP+L +KGSYNP THIYTA+DVKEVIEYARLRGIRVLAEFDTPGHT
Sbjct: 204 HLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT 263
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
SWGPG+PGLLTPCYSGS+PSGTFGPVNP+LN TYEFMSTFF E+SSVFPDFYLHLGGDE
Sbjct: 264 LSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDE 323
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDFTCWKSNP+IQ+FM++KGFG+DFK+LESFYIQTLL IVS YGKGYVVWQEVFDNKVK+
Sbjct: 324 VDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKI 383
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
+PDTIIQVWRE+IPV YMKE+ELVT AGFRALLSAPWYLN I+YGPDWK+ Y+VEPLAFE
Sbjct: 384 QPDTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYIVEPLAFE 443
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQKALVIGGEACMWGEYVD+TNLVPRLWPRAGAVAERLWSNK ++L FA++RL+HF
Sbjct: 444 GTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHF 503
Query: 1552 RCELLRRGVQAQPLSVGYCDVEFEQT 1629
RCELLRRGVQAQPL+VG+C+ EFEQT
Sbjct: 504 RCELLRRGVQAQPLNVGFCEQEFEQT 529
>ref|NP_000512.1| beta-hexosaminidase subunit beta preproprotein [Homo sapiens].
Length = 556
Score = 597 bits (1539), Expect = e-170
Identities = 283/502 (56%), Positives = 357/502 (71%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P +K + + P F + +S A C++L+EAF+RY +FG H
Sbjct: 57 WPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEPA 116
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ + LV + + CD P++ S E+YTL + + L + VWGALRGLETFS
Sbjct: 117 EFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEPVAVLKANRVWGALRGLETFS 176
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QL+++ GTF IN + I D PRF HRG+L+DTSRHYLP+ IL TLD MA+NKFNV HW
Sbjct: 177 QLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHW 236
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S TFP+L+ KGSY+ S H+YT DV+ VIEYARLRGIRVL EFDTPGHT
Sbjct: 237 HIVDDQSFPYQSITFPELSNKGSYSLS-HVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT 295
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
SWG G LLTPCYS +FGP+NPTLN TY F++TFF EIS VFPD ++HLGGDE
Sbjct: 296 LSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDE 355
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
V+F CW+SNP IQ+FM+QKGFG DFKKLESFYIQ +L I++ KG +VWQEVFD+K K+
Sbjct: 356 VEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFDDKAKL 415
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
P TI++VW++ Y +E+ VT +GF +LSAPWYL+ I+YG DW++ Y VEPL F
Sbjct: 416 APGTIVEVWKDS---AYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFG 472
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GT +QK L IGGEAC+WGEYVD+TNL PRLWPRA AV ERLWS+K V ++D A+ RLT
Sbjct: 473 GTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRH 532
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++ RG+ AQPL GYC+ E
Sbjct: 533 RCRMVERGIAAQPLYAGYCNHE 554
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,165,660
Number of extensions: 2609680
Number of successful extensions: 10599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10524
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 492
Effective length of database: 14,737,052
Effective search space: 7250629584
Effective search space used: 7250629584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034551.2| beta-hexosaminidase subunit alpha precursor [Mu... 862 0.0
Alignment gi|NP_034552.1| beta-hexosaminidase subunit beta precursor [Mus... 592 e-169
>ref|NP_034551.2| beta-hexosaminidase subunit alpha precursor [Mus musculus].
Length = 528
Score = 862 bits (2226), Expect = 0.0
Identities = 409/506 (80%), Positives = 450/506 (88%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WPWPQYI+T YT+ P+ FQF+YH SSAAQ GC VLDEAF+RYR+LLFGS +
Sbjct: 24 WPWPQYIQTYHRRYTLYPNNFQFRYHVSSAAQAGCVVLDEAFRRYRNLLFGSGSWPRPSF 83
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
K KN LVV VVT C++ P+LESVENYTLTIND+QC L SETVWGALRGLETFS
Sbjct: 84 SNKQQTLGKNILVVSVVTAECNEFPNLESVENYTLTINDDQCLLASETVWGALRGLETFS 143
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QL+WKS EGTF+IN+T+I+DFPRFPHRG+LLDTSRHYLPL+SILDTLDVMAYNKFNVFHW
Sbjct: 144 QLVWKSAEGTFFINKTKIKDFPRFPHRGVLLDTSRHYLPLSSILDTLDVMAYNKFNVFHW 203
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
HLVDDSSFPYESFTFP+LT+KGS+NP THIYTA+DVKEVIEYARLRGIRVLAEFDTPGHT
Sbjct: 204 HLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT 263
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
SWGPG PGLLTPCYSGS SGTFGPVNP+LN TY+FMST F EISSVFPDFYLHLGGDE
Sbjct: 264 LSWGPGAPGLLTPCYSGSHLSGTFGPVNPSLNSTYDFMSTLFLEISSVFPDFYLHLGGDE 323
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDFTCWKSNP+IQ FMK+KGF DFK+LESFYIQTLL IVS Y KGYVVWQEVFDNKVKV
Sbjct: 324 VDFTCWKSNPNIQAFMKKKGF-TDFKQLESFYIQTLLDIVSDYDKGYVVWQEVFDNKVKV 382
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
RPDTIIQVWREE+PV+YM EM+ +T AGFRALLSAPWYLN + YGPDWK++Y VEPLAF
Sbjct: 383 RPDTIIQVWREEMPVEYMLEMQDITRAGFRALLSAPWYLNRVKYGPDWKDMYKVEPLAFH 442
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWS+ TN+DFAFKRL+HF
Sbjct: 443 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSSNLTTNIDFAFKRLSHF 502
Query: 1552 RCELLRRGVQAQPLSVGYCDVEFEQT 1629
RCEL+RRG+QAQP+SVGYC+ EFEQT
Sbjct: 503 RCELVRRGIQAQPISVGYCEQEFEQT 528
>ref|NP_034552.1| beta-hexosaminidase subunit beta precursor [Mus musculus].
Length = 536
Score = 592 bits (1526), Expect = e-169
Identities = 281/502 (55%), Positives = 362/502 (72%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP+P+ ++ I F + +S A CS+L EAF+RY + +FG H
Sbjct: 36 WPFPRSVQMFPRLLYISAEDFSIDHSPNSTAGPSCSLLQEAFRRYYNYVFGFYKRHHGPA 95
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ + LV + + C+ PSL S E Y+L + + L + +VWGALRGLETFS
Sbjct: 96 RFRAEPQLQKLLVSITLESECESFPSLSSDETYSLLVQEPVAVLKANSVWGALRGLETFS 155
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QL+++ GTF IN + I D PRFPHRG+L+DTSRH+LP+ +IL TLD MA+NKFNV HW
Sbjct: 156 QLVYQDSFGTFTINESSIADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHW 215
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S TFP+L+ KGSY+ S H+YT DV+ V+EYARLRGIRV+ EFDTPGHT
Sbjct: 216 HIVDDQSFPYQSTTFPELSNKGSYSLS-HVYTPNDVRMVLEYARLRGIRVIPEFDTPGHT 274
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
QSWG G LLTPCY+ + FGPV+PT+N TY F +TFF EISSVFPD ++HLGGDE
Sbjct: 275 QSWGKGQKNLLTPCYNQKTKTQVFGPVDPTVNTTYAFFNTFFKEISSVFPDQFIHLGGDE 334
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
V+F CW SNP+IQ FMK+KGFG DF++LESFYI+ +L I+S K +VWQEVFD+KV++
Sbjct: 335 VEFQCWASNPNIQGFMKRKGFGSDFRRLESFYIKKILEIISSLKKNSIVWQEVFDDKVEL 394
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
+P T+++VW+ E Y E++ VT +GF A+LSAPWYL+ I+YG DWK Y VEPL FE
Sbjct: 395 QPGTVVEVWKSE---HYSYELKQVTGSGFPAILSAPWYLDLISYGQDWKNYYKVEPLNFE 451
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
G+ +QK LVIGGEAC+WGE+VD+TNL PRLWPRA AV ERLWS K VT+L+ A+KRL
Sbjct: 452 GSEKQKQLVIGGEACLWGEFVDATNLTPRLWPRASAVGERLWSPKTVTDLENAYKRLAVH 511
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++ RG+ AQPL GYC+ E
Sbjct: 512 RCRMVSRGIAAQPLYTGYCNYE 533
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,315,681
Number of extensions: 2160409
Number of successful extensions: 8602
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8536
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 493
Effective length of database: 12,403,707
Effective search space: 6115027551
Effective search space used: 6115027551
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116693.1| beta-hexosaminidase subunit alpha [Sus scrof... 1060 0.0
Alignment gi|NP_999086.1| beta-hexosaminidase subunit beta [Sus scrofa]. 536 e-152
>ref|NP_001116693.1| beta-hexosaminidase subunit alpha [Sus scrofa].
Length = 529
Score = 1060 bits (2740), Expect = 0.0
Identities = 504/506 (99%), Positives = 504/506 (99%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR
Sbjct: 24 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 83
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS
Sbjct: 84 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 143
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW
Sbjct: 144 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 203
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT
Sbjct: 204 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 263
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE
Sbjct: 264 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 323
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDFTCWKSNPDIQNFMKQKG GKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV
Sbjct: 324 VDFTCWKSNPDIQNFMKQKGLGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 383
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
R DTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE
Sbjct: 384 RADTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 443
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF
Sbjct: 444 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 503
Query: 1552 RCELLRRGVQAQPLSVGYCDVEFEQT 1629
RCELLRRGVQAQPLSVGYCDVEFEQT
Sbjct: 504 RCELLRRGVQAQPLSVGYCDVEFEQT 529
>ref|NP_999086.1| beta-hexosaminidase subunit beta [Sus scrofa].
Length = 531
Score = 536 bits (1380), Expect = e-152
Identities = 262/502 (52%), Positives = 338/502 (67%)
Frame = +1
Query: 112 WPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGSVTLHFRHR 291
WP P + S S + P+ F F + +S A C +L EAF+RY D +FG H +
Sbjct: 33 WPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWH-QGS 91
Query: 292 VEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGALRGLETFS 471
+ +E L V V + CD PS+ S E+Y L + + L + TVWGALRGLETFS
Sbjct: 92 YQLCFGTELQQLQVHVESE-CDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETFS 150
Query: 472 QLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHW 651
QLI++ GTF +N +EI DFPRFPHRG+L+DT RH+L + +I TLD MA+NKFNV HW
Sbjct: 151 QLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLHW 210
Query: 652 HLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLAEFDTPGHT 831
H+VDD SFPY+S F L+ KGSY+ S H+YT DV+ VIEYAR+RGIRV+ EFDTPGH+
Sbjct: 211 HIVDDQSFPYQSINFGVLSSKGSYSLS-HVYTPNDVRMVIEYARIRGIRVMPEFDTPGHS 269
Query: 832 QSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPDFYLHLGGDE 1011
+SWG G LLTPCY SGTFGP+NP LN TY F+S FF EIS+VFPD ++H+GGDE
Sbjct: 270 RSWGKGQKDLLTPCYRKQVLSGTFGPINPILNTTYNFLSKFFKEISTVFPDEFIHIGGDE 329
Query: 1012 VDFTCWKSNPDIQNFMKQKGFGKDFKKLESFYIQTLLGIVSGYGKGYVVWQEVFDNKVKV 1191
VDF CW SN +I FM++KGF + + + ++S K +VWQE FD + K
Sbjct: 330 VDFDCWASNSEILQFMQEKGFSQISLNSNLCTVFKISNMISAMKKRPIVWQEAFDGRDKF 389
Query: 1192 RPDTIIQVWREEIPVKYMKEMELVTLAGFRALLSAPWYLNHITYGPDWKEVYMVEPLAFE 1371
P T++QVW+ E Y E L+T AGF +LSAPWYL+ I+YG DWK Y VEP F
Sbjct: 390 MPGTVVQVWKIE---DYKWEQSLITKAGFPVILSAPWYLDLISYGQDWKNYYEVEPQDFP 446
Query: 1372 GTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKAVTNLDFAFKRLTHF 1551
G+ +++ V+GGEAC+WGEYVD+TNL PRLWPRA AV ERLWS+K V ++ A+ RLT
Sbjct: 447 GSDKERKRVLGGEACLWGEYVDATNLTPRLWPRASAVGERLWSHKDVRDIHDAYSRLTIH 506
Query: 1552 RCELLRRGVQAQPLSVGYCDVE 1617
RC ++RRG+ A+PL GYC+ E
Sbjct: 507 RCRMVRRGIAAEPLFTGYCNHE 528
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,915,685
Number of extensions: 1672597
Number of successful extensions: 7625
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7527
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 495
Effective length of database: 8,729,747
Effective search space: 4321224765
Effective search space used: 4321224765
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007515
(1802 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 585 e-164
>Sscrofa_Chr07
|| Length = 134764511
Score = 585 bits (295), Expect = e-164
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 tcacgtgactcggccagctgggagagaagagaccggcggtccatggcagcctccacgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65420852 tcacgtgactcggccagctgggagagaagagaccggcggtccatggcagcctccacgctc 65420911
Query: 61 tggttttcgctgctactggcggcagcttccgctgggcgggcgacggccctgtggccatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65420912 tggttttcgctgctactggcggcagcttccgctgggcgggcgacggccctgtggccatgg 65420971
Query: 121 ccccagtacatcaaaacttccgactggagctacaccatcgtaccgcacaccttccagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65420972 ccccagtacatcaaaacttccgactggagctacaccatcgtaccgcacaccttccagttc 65421031
Query: 181 cagtaccacaagagttcggccgcgcaggtgggctgctccgtcctcgacgaggccttccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65421032 cagtaccacaagagttcggccgcgcaggtgggctgctccgtcctcgacgaggccttccaa 65421091
Query: 241 cgctaccgtgacctgctcttcggttccgtgactttgcactttcgccatcgcgtgg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65421092 cgctaccgtgacctgctcttcggttccgtgactttgcactttcgccatcgcgtgg 65421146
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 1567 aggcggggtgtccaggcccagcccctcagcgtaggctactgtgacgtggagtttgaacaa 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65453676 aggcggggtgtccaggcccagcccctcagcgtaggctactgtgacgtggagtttgaacaa 65453735
Query: 1627 acctgagcaagcagcaccaggcaccaaggagggtgctggccctaggagagcttccactgc 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65453736 acctgagcaagcagcaccaggcaccaaggagggtgctggccctaggagagcttccactgc 65453795
Query: 1687 acctcgccccgggggacggagcccctgcccacatgcccctgtgcctggagacaagggggg 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65453796 acctcgccccgggggacggagcccctgcccacatgcccctgtgcctggagacaagggggg 65453855
Query: 1747 ctggtgctggagctggtgtccaataaagagtgatgtggtattttt 1791
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65453856 ctggtgctggagctggtgtccaataaagagtgatgtggtattttt 65453900
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1187 aggttcggccagacacaatcatccaggtgtggcgagaagagataccagtaaagtacatga 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65451293 aggttcggccagacacaatcatccaggtgtggcgagaagagataccagtaaagtacatga 65451352
Query: 1247 aagagatggaactggtcacccttgctggcttccgggccctgctgtctgccccctggtacc 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65451353 aagagatggaactggtcacccttgctggcttccgggccctgctgtctgccccctggtacc 65451412
Query: 1307 tgaaccatataacatatggccctgactggaaggaggtctacatggtggagcccctggcat 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65451413 tgaaccatataacatatggccctgactggaaggaggtctacatggtggagcccctggcat 65451472
Query: 1367 ttgaagg 1373
|||||||
Sbjct: 65451473 ttgaagg 65451479
Score = 365 bits (184), Expect = 6e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 846 aggtgtccctggattattaactccctgctactctgggtctcaaccatctggcacctttgg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65449056 aggtgtccctggattattaactccctgctactctgggtctcaaccatctggcacctttgg 65449115
Query: 906 accagtgaatcccactctcaactacacctatgagttcatgagcacgttcttctcagagat 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65449116 accagtgaatcccactctcaactacacctatgagttcatgagcacgttcttctcagagat 65449175
Query: 966 cagctctgtcttcccagatttttatcttcaccttggaggagatgaggtggatttcacctg 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65449176 cagctctgtcttcccagatttttatcttcaccttggaggagatgaggtggatttcacctg 65449235
Query: 1026 ctgg 1029
||||
Sbjct: 65449236 ctgg 65449239
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 713 agggctcctacaacccttccacccacatctacacagcacgggatgtgaaggaggtgattg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65447668 agggctcctacaacccttccacccacatctacacagcacgggatgtgaaggaggtgattg 65447727
Query: 773 aatatgcacggcttcggggtatccgtgtgttggcagagtttgacactcctggccacactc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65447728 aatatgcacggcttcggggtatccgtgtgttggcagagtttgacactcctggccacactc 65447787
Query: 833 agtcctggggaccaggtg 850
||||||||||||||||||
Sbjct: 65447788 agtcctggggaccaggtg 65447805
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 501 gttctatatcaacaggacggagatcgaggacttcccccgcttcccccaccggggcttgtt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65445866 gttctatatcaacaggacggagatcgaggacttcccccgcttcccccaccggggcttgtt 65445925
Query: 561 gttggacacatctcgccattacctgccactggctagcatcctggacactctgg 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65445926 gttggacacatctcgccattacctgccactggctagcatcctggacactctgg 65445978
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1463 ggcctagagcaggggctgttgccgagaggctgtggagcaacaaggcggtgaccaacctgg 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65452654 ggcctagagcaggggctgttgccgagaggctgtggagcaacaaggcggtgaccaacctgg 65452713
Query: 1523 actttgcctttaaacgtctgacacacttccgatgtgaactgctgagg 1569
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65452714 actttgcctttaaacgtctgacacacttccgatgtgaactgctgagg 65452760
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 612 ggatgtcatggcatacaataaattcaacgtgttccattggcatctggttgatgactcttc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65447095 ggatgtcatggcatacaataaattcaacgtgttccattggcatctggttgatgactcttc 65447154
Query: 672 cttcccatacgagagcttcacttttccagacctcaccaaaaagg 715
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65447155 cttcccatacgagagcttcacttttccagacctcaccaaaaagg 65447198
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 295 gaaaaatggcatatatcagagaagaattccttggttgtcctcgtagttactcctggatgt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65442490 gaaaaatggcatatatcagagaagaattccttggttgtcctcgtagttactcctggatgt 65442549
Query: 355 gaccagcttccttctttggagtcggtggagaatt 388
||||||||||||||||||||||||||||||||||
Sbjct: 65442550 gaccagcttccttctttggagtcggtggagaatt 65442583
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1371 aggcacccctgagcagaaggctctggtgattggtggagaggcctgtatgtggggagagta 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65451611 aggcacccctgagcagaaggctctggtgattggtggagaggcctgtatgtggggagagta 65451670
Query: 1431 tgtggacagcacaaacctggtccccagactctgg 1464
||||||||||||||||||||||||||||||||||
Sbjct: 65451671 tgtggacagcacaaacctggtccccagactctgg 65451704
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1028 ggaagtctaacccagatatccagaattttatgaagcagaaaggctttggtaaggacttca 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65450188 ggaagtctaacccagatatccagaattttatgaagcagaaaggctttggtaaggacttca 65450247
Query: 1088 agaagctggagtccttctacatccagacg 1116
|||||||||||||||||||||||||||||
Sbjct: 65450248 agaagctggagtccttctacatccagacg 65450276
Score = 149 bits (75), Expect = 6e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1116 gctactgggcattgtctctggctatggcaagggctatgtggtgtggcaggaggtatttga 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65450534 gctactgggcattgtctctggctatggcaagggctatgtggtgtggcaggaggtatttga 65450593
Query: 1176 caataaagtcaaggt 1190
|||||||||||||||
Sbjct: 65450594 caataaagtcaaggt 65450608
Score = 135 bits (68), Expect = 9e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 389 acacgctgactataaatgatgagcagtgtttcctcctctcagagactgtctggggcgccc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65443734 acacgctgactataaatgatgagcagtgtttcctcctctcagagactgtctggggcgccc 65443793
Query: 449 tccgaggt 456
||||||||
Sbjct: 65443794 tccgaggt 65443801
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 453 aggtctggagacttttagccagcttatttggaagtctcctgagggcacg 501
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65445314 aggtctggagacttttagccagcttatttggaagtctcctgagggcacg 65445362
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,505,346
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 14
Length of query: 1802
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1780
Effective length of database: 2,808,408,574
Effective search space: 4998967261720
Effective search space used: 4998967261720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)