Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068667.1| nucleobindin-1 precursor [Bos taurus]. 602 e-172
Alignment gi|NP_001068849.1| nucleobindin-2 [Bos taurus]. 390 e-108
>ref|NP_001068667.1| nucleobindin-1 precursor [Bos taurus].
Length = 474
Score = 602 bits (1552), Expect = e-172
Identities = 313/399 (78%), Positives = 320/399 (80%), Gaps = 17/399 (4%)
Frame = +1
Query: 124 MPPYGXXXXXXXXXXXXXXXXXXXXXXDRGASKEENPATESPDTGLYYHRYLQEVINVLE 303
MPP G +RGA KEENPATESPDTGLYYHRYLQEVINVLE
Sbjct: 1 MPPSGPRAALFLLPSLLLLRAVLAVPLERGAPKEENPATESPDTGLYYHRYLQEVINVLE 60
Query: 304 TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQ 483
TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDA+Q
Sbjct: 61 TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAQQ 120
Query: 484 EPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK 663
EPN+QLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK
Sbjct: 121 EPNIQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK 180
Query: 664 EHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF 843
EHERRRYLESLGEEQRKEAE+KLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF
Sbjct: 181 EHERRRYLESLGEEQRKEAERKLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF 240
Query: 844 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKN 1023
NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKN HVMKN
Sbjct: 241 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEDDDMREMEEERLRMREHVMKN 300
Query: 1024 VDTNQDRLVTLDEFLASTQRKEFGDTGEGWE-----------------TVKMHPAYTXXX 1152
VDTNQDRLVTL+EFLASTQRKEFGDTGEGWE TV+MHPAYT
Sbjct: 301 VDTNQDRLVTLEEFLASTQRKEFGDTGEGWEQGKAGVPLPMAPVLTLQTVEMHPAYTEEE 360
Query: 1153 XXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
NA+AQRLSQETEALGR Q RL AQ
Sbjct: 361 LRRFEEELAAREAELNAKAQRLSQETEALGRSQGRLEAQ 399
>ref|NP_001068849.1| nucleobindin-2 [Bos taurus].
Length = 415
Score = 390 bits (1002), Expect = e-108
Identities = 201/343 (58%), Positives = 243/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 46 EPPDTGLYYDEYLKQVIDVLETDSHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 105
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ +DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 106 LKRQEVARLRMLIKAKLDSFQDTG--MDHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 163
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD A HEEFK+YEM+KEHERR YL++L EE+RKE E K E +++H HPKVN P
Sbjct: 164 SDLEHYDKARHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFAEMKKKHENHPKVNHP 223
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+NSDG LDEQELEALFTKELEKVYDPKN
Sbjct: 224 GSKDQLKEVWEEADGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVYDPKNE 283
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VDTN+DRLVTLDEFL +T++KEF + + WET+ +
Sbjct: 284 EDDMVEMEEERLRMREHVMNEVDTNKDRLVTLDEFLKATEKKEFLEP-DSWETLDHQQFF 342
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 343 TEEELKEYENLISVQESKLKKKADELQKQKEDLQRQHDQLEAQ 385
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,655,265
Number of extensions: 986601
Number of successful extensions: 6008
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5785
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541506.2| PREDICTED: similar to Nucleobindin 1 precursor ... 609 e-174
Alignment gi|XP_864748.1| PREDICTED: similar to Nucleobindin 1 precursor ... 592 e-169
Alignment gi|XP_865089.1| PREDICTED: similar to Nucleobindin 2 precursor ... 395 e-110
Alignment gi|XP_865068.1| PREDICTED: similar to Nucleobindin 2 precursor ... 395 e-110
Alignment gi|XP_865050.1| PREDICTED: similar to Nucleobindin 2 precursor ... 390 e-108
Alignment gi|XP_534078.1| PREDICTED: similar to Nucleobindin 2 precursor ... 388 e-108
Alignment gi|XP_865013.1| PREDICTED: similar to Nucleobindin 2 precursor ... 376 e-104
Alignment gi|XP_865030.1| PREDICTED: similar to Nucleobindin 2 precursor ... 369 e-102
Alignment gi|XP_864994.1| PREDICTED: similar to Nucleobindin 2 precursor ... 346 3e-95
Alignment gi|XP_852427.1| PREDICTED: similar to nucleobindin 1 [Canis fam... 283 3e-76
>ref|XP_541506.2| PREDICTED: similar to Nucleobindin 1 precursor (CALNUC) isoform 1
[Canis familiaris].
Length = 457
Score = 609 bits (1570), Expect = e-174
Identities = 308/355 (86%), Positives = 316/355 (89%)
Frame = +1
Query: 205 DRGASKEENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD 384
+RGA K+E+PATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD
Sbjct: 28 ERGAPKQESPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD 87
Query: 385 FVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFE 564
FVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHL+LLKQFEHLDPQNQHTFE
Sbjct: 88 FVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLSLLKQFEHLDPQNQHTFE 147
Query: 565 ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQ 744
ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAE+KLEEQQ
Sbjct: 148 ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAERKLEEQQ 207
Query: 745 RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT 924
RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT
Sbjct: 208 RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT 267
Query: 925 KELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTG 1104
KELEKVYDPKN HVMKNVDTNQDRLVTL+EFLASTQRKEFGDTG
Sbjct: 268 KELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDTG 327
Query: 1105 EGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
EGWETV+MHPAYT NA+AQRLSQETEALGR Q RL AQ
Sbjct: 328 EGWETVEMHPAYTEEELRRFEEELAAREAELNAKAQRLSQETEALGRSQGRLEAQ 382
>ref|XP_864748.1| PREDICTED: similar to Nucleobindin 1 precursor (CALNUC) isoform 2
[Canis familiaris].
Length = 454
Score = 592 bits (1525), Expect = e-169
Identities = 302/355 (85%), Positives = 311/355 (87%)
Frame = +1
Query: 205 DRGASKEENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD 384
+RGA K+E+PATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD
Sbjct: 28 ERGAPKQESPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELD 87
Query: 385 FVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFE 564
FVSHHVRTKLDELKRQEVSRLRMLLKAKMDA+ N LDHL+LLKQFEHLDPQNQHTFE
Sbjct: 88 FVSHHVRTKLDELKRQEVSRLRMLLKAKMDAD---NTGLDHLSLLKQFEHLDPQNQHTFE 144
Query: 565 ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQ 744
ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAE+KLEEQQ
Sbjct: 145 ARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAERKLEEQQ 204
Query: 745 RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT 924
RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT
Sbjct: 205 RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFT 264
Query: 925 KELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTG 1104
KELEKVYDPKN HVMKNVDTNQDRLVTL+EFLASTQRKEFGDTG
Sbjct: 265 KELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDTG 324
Query: 1105 EGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
EGWETV+MHPAYT NA+AQRLSQETEALGR Q RL AQ
Sbjct: 325 EGWETVEMHPAYTEEELRRFEEELAAREAELNAKAQRLSQETEALGRSQGRLEAQ 379
>ref|XP_865089.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 7 [Canis
familiaris].
Length = 421
Score = 395 bits (1016), Expect = e-110
Identities = 200/343 (58%), Positives = 243/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ QE N +DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQETNTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 164
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 165 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 224
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPKN
Sbjct: 225 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPKNE 284
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VD N+DRLVTLDEFL +T++KEF + + WET+ +
Sbjct: 285 EDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEFLEP-DSWETMDQQQFF 343
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 344 TEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 386
>ref|XP_865068.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 6 [Canis
familiaris].
Length = 421
Score = 395 bits (1015), Expect = e-110
Identities = 199/343 (58%), Positives = 243/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+P +DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQDPGSSIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 164
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 165 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 224
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPKN
Sbjct: 225 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPKNE 284
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VD N+DRLVTLDEFL +T++KEF + + WET+ +
Sbjct: 285 EDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEFLEP-DSWETMDQQQFF 343
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 344 TEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 386
>ref|XP_865050.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 5 [Canis
familiaris].
Length = 421
Score = 390 bits (1003), Expect = e-108
Identities = 198/343 (57%), Positives = 242/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q + +DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQGNDTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 164
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 165 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 224
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPKN
Sbjct: 225 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPKNE 284
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VD N+DRLVTLDEFL +T++KEF + + WET+ +
Sbjct: 285 EDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEFLEP-DSWETMDQQQFF 343
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 344 TEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 386
>ref|XP_534078.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 1 [Canis
familiaris].
Length = 419
Score = 388 bits (997), Expect = e-108
Identities = 198/343 (57%), Positives = 242/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 162
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 163 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 222
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPKN
Sbjct: 223 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPKNE 282
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VD N+DRLVTLDEFL +T++KEF + + WET+ +
Sbjct: 283 EDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEFLEP-DSWETMDQQQFF 341
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 342 TEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 384
>ref|XP_865013.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 3 [Canis
familiaris].
Length = 435
Score = 376 bits (965), Expect = e-104
Identities = 197/359 (54%), Positives = 242/359 (67%), Gaps = 16/359 (4%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 162
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 163 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 222
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILH----------------DINSDGVLDEQELE 912
GS+ QLKEVWEE DGLDPN F+PKTFF LH ++N+DG LDEQELE
Sbjct: 223 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHGNRFDTNIYVCCLKDYNVNNDGFLDEQELE 282
Query: 913 ALFTKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEF 1092
ALFTKELEKVYDPKN HVM VD N+DRLVTLDEFL +T++KEF
Sbjct: 283 ALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEF 342
Query: 1093 GDTGEGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
+ + WET+ +T +A L ++ E L R +L AQ
Sbjct: 343 LEP-DSWETMDQQQFFTEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 400
>ref|XP_865030.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 4 [Canis
familiaris].
Length = 420
Score = 369 bits (947), Expect = e-102
Identities = 194/345 (56%), Positives = 240/345 (69%), Gaps = 2/345 (0%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ A
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIK-AV 161
Query: 601 RDLAQ--YDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVN 774
R + + HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN
Sbjct: 162 RIIPKSVVIVTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVN 221
Query: 775 VPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPK 954
PGS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPK
Sbjct: 222 HPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPK 281
Query: 955 NXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHP 1134
N HVM VD N+DRLVTLDEFL +T++KEF + + WET+
Sbjct: 282 NEEDDMVEMEEERLRMREHVMNEVDANKDRLVTLDEFLKATEKKEFLEP-DSWETMDQQQ 340
Query: 1135 AYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
+T +A L ++ E L R +L AQ
Sbjct: 341 FFTEEELKEYENLISLQENELKKKADELQKQKEELQRQHDQLEAQ 385
>ref|XP_864994.1| PREDICTED: similar to Nucleobindin 2 precursor (DNA-binding protein
NEFA) (Gastric cancer antigen Zg4) isoform 2 [Canis
familiaris].
Length = 389
Score = 346 bits (887), Expect = 3e-95
Identities = 173/274 (63%), Positives = 208/274 (75%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVRTKLDE
Sbjct: 45 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDE 104
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 105 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 162
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E + EE +++H HPKVN P
Sbjct: 163 SDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESRFEEMRKKHENHPKVNHP 222
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFTKELEKVYDPKN
Sbjct: 223 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELEKVYDPKNE 282
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDE 1062
HVM N +Q + T +E
Sbjct: 283 EDDMVEMEEERLRMREHVM-NETMDQQQFFTEEE 315
>ref|XP_852427.1| PREDICTED: similar to nucleobindin 1 [Canis familiaris].
Length = 299
Score = 283 bits (723), Expect = 3e-76
Identities = 168/262 (64%), Positives = 177/262 (67%)
Frame = +1
Query: 85 GKRPLQRRRDHAAMPPYGXXXXXXXXXXXXXXXXXXXXXXDRGASKEENPATESPDTGLY 264
G+RPL+ + AA P G GA P ESP TGL
Sbjct: 65 GRRPLRGWKGQAATPSSGPRAAPQPRSSGHHCGCACAG----GAPGAGAPKQESPATGLS 120
Query: 265 YHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSR 444
YHRYLQEVINVLETDGHF+EKL AANAEDIKSG+LSRELDFVSHHV TK D LKRQEVSR
Sbjct: 121 YHRYLQEVINVLETDGHFQEKLPAANAEDIKSGELSRELDFVSHHVLTKPDGLKRQEVSR 180
Query: 445 LRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDA 624
LRMLLKAK DAEQEPNV HT + E AT LAQ DA
Sbjct: 181 LRMLLKAKKDAEQEPNV-------------------HTVGSS--EPPEAGATWALAQDDA 219
Query: 625 AHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPGSQAQLKE 804
AHHEEFKRY+ML EHER RYLESLGEEQRKEAE+KLEEQQRRH+EHPKVNVPGSQAQLKE
Sbjct: 220 AHHEEFKRYKML-EHERHRYLESLGEEQRKEAERKLEEQQRRHQEHPKVNVPGSQAQLKE 278
Query: 805 VWEELDGLDPNRFNPKTFFILH 870
LDGLDPNRFNPK FILH
Sbjct: 279 A---LDGLDPNRFNPKIAFILH 297
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,435,523
Number of extensions: 1022457
Number of successful extensions: 6982
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6449
Number of HSP's successfully gapped: 10
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006175.2| nucleobindin-1 precursor [Homo sapiens]. 603 e-173
Alignment gi|NP_005004.1| nucleobindin-2 precursor [Homo sapiens]. 392 e-109
>ref|NP_006175.2| nucleobindin-1 precursor [Homo sapiens].
Length = 461
Score = 603 bits (1556), Expect = e-173
Identities = 307/356 (86%), Positives = 316/356 (88%), Gaps = 1/356 (0%)
Frame = +1
Query: 205 DRGA-SKEENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSREL 381
+RGA +KEE PATESPDTGLYYHRYLQEVI+VLETDGHFREKLQAANAEDIKSGKLSREL
Sbjct: 30 ERGAPNKEETPATESPDTGLYYHRYLQEVIDVLETDGHFREKLQAANAEDIKSGKLSREL 89
Query: 382 DFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTF 561
DFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQ+PNVQ+DHLNLLKQFEHLDPQNQHTF
Sbjct: 90 DFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQDPNVQVDHLNLLKQFEHLDPQNQHTF 149
Query: 562 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQ 741
EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAE+KLEEQ
Sbjct: 150 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAERKLEEQ 209
Query: 742 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 921
QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF
Sbjct: 210 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 269
Query: 922 TKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDT 1101
TKELEKVYDPKN HVMKNVDTNQDRLVTL+EFLASTQRKEFGDT
Sbjct: 270 TKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDT 329
Query: 1102 GEGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
GEGWETV+MHPAYT NA+AQRLSQETEALGR Q RL AQ
Sbjct: 330 GEGWETVEMHPAYTEEELRRFEEELAAREAELNAKAQRLSQETEALGRSQGRLEAQ 385
>ref|NP_005004.1| nucleobindin-2 precursor [Homo sapiens].
Length = 420
Score = 392 bits (1006), Expect = e-109
Identities = 201/348 (57%), Positives = 245/348 (70%)
Frame = +1
Query: 226 ENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVR 405
E+ E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LS+ELD VSHHVR
Sbjct: 41 ESAKIEPPDTGLYYDEYLKQVIDVLETDKHFREKLQKADIEEIKSGRLSKELDLVSHHVR 100
Query: 406 TKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELL 585
TKLDELKRQEV RLRML+KAK+D+ Q+ + +DH LLKQF+HL+ N FE+ DL++L
Sbjct: 101 TKLDELKRQEVGRLRMLIKAKLDSLQD--IGMDHQALLKQFDHLNHLNPDKFESTDLDML 158
Query: 586 IQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHP 765
I+ AT DL YD HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +++H HP
Sbjct: 159 IKAATSDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESKFEEMKKKHENHP 218
Query: 766 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 945
KVN PGS+ QLKEVWEE DGLDPN F+PKTFF LHD+NSDG LDEQELEALFTKELEKVY
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVY 278
Query: 946 DPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVK 1125
DPKN HVM VDTN+DRLVTL+EFL +T++KEF + + WET+
Sbjct: 279 DPKNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKKEFLEP-DSWETLD 337
Query: 1126 MHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
+T +A L ++ E L R +L AQ
Sbjct: 338 QQQFFTEEELKEYENIIALQENELKKKADELQKQKEELQRQHDQLEAQ 385
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,550,113
Number of extensions: 993211
Number of successful extensions: 6182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5858
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032775.1| nucleobindin-1 isoform 2 [Mus musculus]. 585 e-167
Alignment gi|NP_001157134.1| nucleobindin-1 isoform 1 [Mus musculus]. 585 e-167
Alignment gi|NP_001123951.1| nucleobindin-2 isoform 1 [Mus musculus]. 390 e-108
Alignment gi|NP_058053.2| nucleobindin-2 isoform 2 [Mus musculus]. 390 e-108
>ref|NP_032775.1| nucleobindin-1 isoform 2 [Mus musculus].
Length = 455
Score = 585 bits (1507), Expect = e-167
Identities = 297/356 (83%), Positives = 313/356 (87%), Gaps = 1/356 (0%)
Frame = +1
Query: 205 DRGAS-KEENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSREL 381
DR A +E++ ATE+PDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLS+EL
Sbjct: 29 DRAAPPQEDSQATETPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSQEL 88
Query: 382 DFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTF 561
DFVSH+VRTKLDELKRQEVSRLRMLLKAKMDA+QEPN+Q+DH+NLLKQFEHLDPQNQHTF
Sbjct: 89 DFVSHNVRTKLDELKRQEVSRLRMLLKAKMDAKQEPNLQVDHMNLLKQFEHLDPQNQHTF 148
Query: 562 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQ 741
EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAE+KL+EQ
Sbjct: 149 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAERKLQEQ 208
Query: 742 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 921
QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF
Sbjct: 209 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 268
Query: 922 TKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDT 1101
TKELEKVYDPKN HVMKNVDTNQDRLVTL+EFLASTQRKEFGDT
Sbjct: 269 TKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDT 328
Query: 1102 GEGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
GEGW+TV+M PAYT NA+AQRLSQETEALGR Q RL AQ
Sbjct: 329 GEGWKTVEMSPAYTEEELKRFEEELAAREAELNARAQRLSQETEALGRSQDRLEAQ 384
>ref|NP_001157134.1| nucleobindin-1 isoform 1 [Mus musculus].
Length = 459
Score = 585 bits (1507), Expect = e-167
Identities = 297/356 (83%), Positives = 313/356 (87%), Gaps = 1/356 (0%)
Frame = +1
Query: 205 DRGAS-KEENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSREL 381
DR A +E++ ATE+PDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLS+EL
Sbjct: 29 DRAAPPQEDSQATETPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSQEL 88
Query: 382 DFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTF 561
DFVSH+VRTKLDELKRQEVSRLRMLLKAKMDA+QEPN+Q+DH+NLLKQFEHLDPQNQHTF
Sbjct: 89 DFVSHNVRTKLDELKRQEVSRLRMLLKAKMDAKQEPNLQVDHMNLLKQFEHLDPQNQHTF 148
Query: 562 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQ 741
EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAE+KL+EQ
Sbjct: 149 EARDLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAERKLQEQ 208
Query: 742 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 921
QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF
Sbjct: 209 QRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 268
Query: 922 TKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDT 1101
TKELEKVYDPKN HVMKNVDTNQDRLVTL+EFLASTQRKEFGDT
Sbjct: 269 TKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDT 328
Query: 1102 GEGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
GEGW+TV+M PAYT NA+AQRLSQETEALGR Q RL AQ
Sbjct: 329 GEGWKTVEMSPAYTEEELKRFEEELAAREAELNARAQRLSQETEALGRSQDRLEAQ 384
>ref|NP_001123951.1| nucleobindin-2 isoform 1 [Mus musculus].
Length = 420
Score = 390 bits (1002), Expect = e-108
Identities = 199/348 (57%), Positives = 247/348 (70%)
Frame = +1
Query: 226 ENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVR 405
EN E PDTGLYY YL++VI VLETD HFREKLQ A+ E+I+SG+LS+ELD VSH VR
Sbjct: 41 ENARIEPPDTGLYYDEYLKQVIEVLETDPHFREKLQKADIEEIRSGRLSQELDLVSHKVR 100
Query: 406 TKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELL 585
T+LDELKRQEV RLRML+KAK+DA Q+ ++H LLKQFEHL+ QN +TFE+RDL++L
Sbjct: 101 TRLDELKRQEVGRLRMLIKAKLDALQDTG--MNHHLLLKQFEHLNHQNPNTFESRDLDML 158
Query: 586 IQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHP 765
I+ AT DL QYD HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +R+H +HP
Sbjct: 159 IKAATADLEQYDRTRHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFEEMKRKHEDHP 218
Query: 766 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 945
KVN PGS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFT+ELEKVY
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTRELEKVY 278
Query: 946 DPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVK 1125
+P+N HVM +D N+DRLVTL+EFL +T++KEF + + WET+
Sbjct: 279 NPQNAEDDMIEMEEERLRMREHVMSEIDNNKDRLVTLEEFLRATEKKEFLEP-DSWETLD 337
Query: 1126 MHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
+T +A+ L ++ E L R L AQ
Sbjct: 338 QQQLFTEDELKEYESIIAIQENELKKRAEELQKQKEDLQRQHDHLEAQ 385
>ref|NP_058053.2| nucleobindin-2 isoform 2 [Mus musculus].
Length = 420
Score = 390 bits (1002), Expect = e-108
Identities = 199/348 (57%), Positives = 247/348 (70%)
Frame = +1
Query: 226 ENPATESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVR 405
EN E PDTGLYY YL++VI VLETD HFREKLQ A+ E+I+SG+LS+ELD VSH VR
Sbjct: 41 ENARIEPPDTGLYYDEYLKQVIEVLETDPHFREKLQKADIEEIRSGRLSQELDLVSHKVR 100
Query: 406 TKLDELKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELL 585
T+LDELKRQEV RLRML+KAK+DA Q+ ++H LLKQFEHL+ QN +TFE+RDL++L
Sbjct: 101 TRLDELKRQEVGRLRMLIKAKLDALQDTG--MNHHLLLKQFEHLNHQNPNTFESRDLDML 158
Query: 586 IQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHP 765
I+ AT DL QYD HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +R+H +HP
Sbjct: 159 IKAATADLEQYDRTRHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFEEMKRKHEDHP 218
Query: 766 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 945
KVN PGS+ QLKEVWEE DGLDPN F+PKTFF LHD+N+DG LDEQELEALFT+ELEKVY
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTRELEKVY 278
Query: 946 DPKNXXXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVK 1125
+P+N HVM +D N+DRLVTL+EFL +T++KEF + + WET+
Sbjct: 279 NPQNAEDDMIEMEEERLRMREHVMSEIDNNKDRLVTLEEFLRATEKKEFLEP-DSWETLD 337
Query: 1126 MHPAYTXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
+T +A+ L ++ E L R L AQ
Sbjct: 338 QQQLFTEDELKEYESIIAIQENELKKRAEELQKQKEDLQRQHDHLEAQ 385
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,252,622
Number of extensions: 818741
Number of successful extensions: 5153
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4802
Number of HSP's successfully gapped: 4
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127348.2| PREDICTED: nucleobindin-1-like [Sus scrofa]. 624 e-179
Alignment gi|XP_003122998.2| PREDICTED: nucleobindin-2 isoform 2 [Sus scr... 389 e-108
Alignment gi|XP_003353984.1| PREDICTED: nucleobindin-2 [Sus scrofa]. 348 5e-96
Alignment gi|XP_003353988.1| PREDICTED: phosphatidylinositol-4-phosphate ... 344 5e-95
>ref|XP_003127348.2| PREDICTED: nucleobindin-1-like [Sus scrofa].
Length = 457
Score = 624 bits (1609), Expect = e-179
Identities = 320/382 (83%), Positives = 322/382 (84%)
Frame = +1
Query: 124 MPPYGXXXXXXXXXXXXXXXXXXXXXXDRGASKEENPATESPDTGLYYHRYLQEVINVLE 303
MPPYG DRGASKEENPATESPDTGLYYHRYLQEVINVLE
Sbjct: 1 MPPYGTLTALLLLPPLLLLHAVLAVPLDRGASKEENPATESPDTGLYYHRYLQEVINVLE 60
Query: 304 TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQ 483
TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQ
Sbjct: 61 TDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQ 120
Query: 484 EPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK 663
EPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK
Sbjct: 121 EPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKRYEMLK 180
Query: 664 EHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF 843
EHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF
Sbjct: 181 EHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPGSQAQLKEVWEELDGLDPNRF 240
Query: 844 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNXXXXXXXXXXXXXXXXXHVMKN 1023
NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKN HVMKN
Sbjct: 241 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKN 300
Query: 1024 VDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAYTXXXXXXXXXXXXXXXXXXNA 1203
VDTNQDRLVTLDEFLASTQRKEFGDTGEGWETV+MHPAYT NA
Sbjct: 301 VDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVEMHPAYTEDELRRFEEELAAREAELNA 360
Query: 1204 QAQRLSQETEALGRFQRRLXAQ 1269
+AQRLSQETEALGR Q RL AQ
Sbjct: 361 KAQRLSQETEALGRSQGRLEAQ 382
>ref|XP_003122998.2| PREDICTED: nucleobindin-2 isoform 2 [Sus scrofa].
Length = 419
Score = 389 bits (1000), Expect = e-108
Identities = 200/343 (58%), Positives = 243/343 (70%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LSRELD VSHHVRTKLDE
Sbjct: 46 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDE 105
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 106 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 163
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD A HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +++H HPKVN P
Sbjct: 164 SDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHP 223
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N DG LDEQELEALFTKELEKVYDPKN
Sbjct: 224 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKELEKVYDPKNE 283
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDEFLASTQRKEFGDTGEGWETVKMHPAY 1140
HVM VDTN+DRLVTL+EFL +T+++EF + + WET+ +
Sbjct: 284 EDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKREFLEP-DSWETLDQQQFF 342
Query: 1141 TXXXXXXXXXXXXXXXXXXNAQAQRLSQETEALGRFQRRLXAQ 1269
T +A L ++ E L R +L AQ
Sbjct: 343 TEEELKEYENLISVQETELKKKADELQKQKEELQRQHDQLEAQ 385
>ref|XP_003353984.1| PREDICTED: nucleobindin-2 [Sus scrofa].
Length = 389
Score = 348 bits (892), Expect = 5e-96
Identities = 176/274 (64%), Positives = 208/274 (75%)
Frame = +1
Query: 241 ESPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDE 420
E PDTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LSRELD VSHHVRTKLDE
Sbjct: 46 EPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDE 105
Query: 421 LKRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTAT 600
LKRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 106 LKRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAAT 163
Query: 601 RDLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVP 780
DL YD A HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +++H HPKVN P
Sbjct: 164 SDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHP 223
Query: 781 GSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNX 960
GS+ QLKEVWEE DGLDPN F+PKTFF LHD+N DG LDEQELEALFTKELEKVYDPKN
Sbjct: 224 GSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKELEKVYDPKNE 283
Query: 961 XXXXXXXXXXXXXXXXHVMKNVDTNQDRLVTLDE 1062
HVM N +Q + T +E
Sbjct: 284 EDDMVEMEEERLRMREHVM-NETLDQQQFFTEEE 316
>ref|XP_003353988.1| PREDICTED: phosphatidylinositol-4-phosphate 3-kinase C2
domain-containing subunit alpha [Sus scrofa].
Length = 658
Score = 344 bits (883), Expect = 5e-95
Identities = 172/261 (65%), Positives = 201/261 (77%)
Frame = +1
Query: 244 SPDTGLYYHRYLQEVINVLETDGHFREKLQAANAEDIKSGKLSRELDFVSHHVRTKLDEL 423
S DTGLYY YL++VI+VLETD HFREKLQ A+ E+IKSG+LSRELD VSHHVRTKLDEL
Sbjct: 387 SQDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDEL 446
Query: 424 KRQEVSRLRMLLKAKMDAEQEPNVQLDHLNLLKQFEHLDPQNQHTFEARDLELLIQTATR 603
KRQEV+RLRML+KAK+D+ Q+ + DH LLKQF+HL+ N FE+ DL++LI+ AT
Sbjct: 447 KRQEVARLRMLIKAKLDSLQDTGI--DHHALLKQFDHLNHLNPDKFESTDLDMLIKAATS 504
Query: 604 DLAQYDAAHHEEFKRYEMLKEHERRRYLESLGEEQRKEAEKKLEEQQRRHREHPKVNVPG 783
DL YD A HEEFK+YEM+KEHERR YL++L EE+RKE E K EE +++H HPKVN PG
Sbjct: 505 DLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHPG 564
Query: 784 SQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNXX 963
S+ QLKEVWEE DGLDPN F+PKTFF LHD+N DG LDEQELEALFTKELEKVYDPKN
Sbjct: 565 SKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKELEKVYDPKNEE 624
Query: 964 XXXXXXXXXXXXXXXHVMKNV 1026
HVM V
Sbjct: 625 DDMVEMEEERLRMREHVMNEV 645
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,986,987
Number of extensions: 638763
Number of successful extensions: 3853
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3700
Number of HSP's successfully gapped: 4
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007520
(1271 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 373 e-100
>Sscrofa_Chr06
|| Length = 157765593
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 594 ggccacccgggaccttgcccagtacgatgctgcccatcatgaagagttcaaacgctacga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50128211 ggccacccgggaccttgcccagtacgatgctgcccatcatgaagagttcaaacgctacga 50128152
Query: 654 gatgctcaaggaacatgagagacggcgttatctggagtctctaggagaggagcagcgcaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50128151 gatgctcaaggaacatgagagacggcgttatctggagtctctaggagaggagcagcgcaa 50128092
Query: 714 ggaggcagagaagaagctggaagagcaacagcgccggcaccgagaacaccccaaagttaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50128091 ggaggcagagaagaagctggaagagcaacagcgccggcaccgagaacaccccaaagttaa 50128032
Query: 774 tgtgcctg 781
||||||||
Sbjct: 50128031 tgtgcctg 50128024
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 111 agaccacgcagccatgccaccctatgggacccttacagccctcctactcctgccacctct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50141337 agaccacgcagccatgccaccctatgggacccttacagccctcctactcctgccacctct 50141278
Query: 171 gctgctgctgcacgctgttctggccgtgcccctggaccggggggcgtccaaggaggagaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50141277 gctgctgctgcacgctgttctggccgtgcccctggaccggggggcgtccaaggaggagaa 50141218
Query: 231 tcccgcgaccgagagccccg 250
||||||||||||||||||||
Sbjct: 50141217 tcccgcgaccgagagccccg 50141198
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 356 agagcgggaagctgagccgggagctggacttcgtcagccaccatgtccgcaccaaactgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50134290 agagcgggaagctgagccgggagctggacttcgtcagccaccatgtccgcaccaaactgg 50134231
Query: 416 atgagctcaagcggcaggaagtgtccaggctgcggatgctgctcaaggccaagatggacg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50134230 atgagctcaagcggcaggaagtgtccaggctgcggatgctgctcaaggccaagatggacg 50134171
Query: 476 cagagcaggagccca 490
|||||||||||||||
Sbjct: 50134170 cagagcaggagccca 50134156
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1 ggctgctgagggcgggtcctctgcgggaaagtgggcacggcctaggggggaaatcaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50141835 ggctgctgagggcgggtcctctgcgggaaagtgggcacggcctaggggggaaatcaccaa 50141776
Query: 61 gaacgcaccggaggtcctggctcgggaaaacgccctctgcagcgaaggagag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50141775 gaacgcaccggaggtcctggctcgggaaaacgccctctgcagcgaaggagag 50141724
Score = 220 bits (111), Expect = 1e-54
Identities = 143/154 (92%)
Strand = Plus / Minus
Query: 1115 agacagtaaagatgcaccctgcctacacggaggatgagctcaggcgtttttgagaagagc 1174
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 50120936 agacagtagagatgcaccctgcctacacggaggatgagctcaggcgttttgaggaagagc 50120877
Query: 1175 tggctgcccgggaagcagaactcaatgcccaggcccagcgcctcagccaggagactgagg 1234
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 50120876 tggctgcccgggaagcagagctcaatgccaaggcccagcgcctcagccaggagactgagg 50120817
Query: 1235 ctctggggcgcttccaaaggcgcctgaangccca 1268
|||||||||||| |||| | |||||| | |||||
Sbjct: 50120816 ctctggggcgctcccaaggccgcctggaggccca 50120783
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 250 gacacaggcctgtactaccaccggtacctccaggaggtcatcaacgtgctggagacggac 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50137655 gacacaggcctgtactaccaccggtacctccaggaggtcatcaacgtgctggagacggac 50137596
Query: 310 gggcacttccgggaaaagctgcaggctgccaatgccgaggacatcaag 357
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50137595 gggcacttccgggaaaagctgcaggctgccaatgccgaggacatcaag 50137548
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 491 atgtgcagttggatcacctgaacctcctaaaacagtttgaacacctggacccacaaaatc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50131923 atgtgcagttggatcacctgaacctcctaaaacagtttgaacacctggacccacaaaatc 50131864
Query: 551 agcacacatttgaggcccgggacctggagctgctgatccagacgg 595
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50131863 agcacacatttgaggcccgggacctggagctgctgatccagacgg 50131819
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 929 agctggagaaggtgtatgacccgaagaatgaggaagacgacatgcgggagatggaggagg 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50121562 agctggagaaggtgtatgacccgaagaatgaggaagacgacatgcgggagatggaggagg 50121503
Query: 989 agcggctgcgcatgcgcgagcacgtgatgaagaatgtg 1026
||||||||||||||||||||||||||||||||||||||
Sbjct: 50121502 agcggctgcgcatgcgcgagcacgtgatgaagaatgtg 50121465
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 1024 gtggacaccaaccaggaccgccttgtgacgctggatgagttcctcgcatccacacagagg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50121378 gtggacaccaaccaggaccgccttgtgacgctggatgagttcctcgcatccacacagagg 50121319
Query: 1084 aaggagttcggggacaccggggagggctgggag 1116
|||||||||||||||||||||||||||||||||
Sbjct: 50121318 aaggagttcggggacaccggggagggctgggag 50121286
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 781 ggcagccaagcccagttgaaggaggtgtgggaggaactggatggattggatcccaacagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50127752 ggcagccaagcccagttgaaggaggtgtgggaggaactggatggattggatcccaacagg 50127693
Query: 841 tttaaccccaagaccttcttcatactgcatg 871
|||||||||||||||||||||||||||||||
Sbjct: 50127692 tttaaccccaagaccttcttcatactgcatg 50127662
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 871 gacatcaacagcgatggtgtcctagatgagcaggagctggaggccctcttcaccaaggag 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50121885 gacatcaacagcgatggtgtcctagatgagcaggagctggaggccctcttcaccaaggag 50121826
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,331,634
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 11
Length of query: 1271
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1250
Effective length of database: 2,808,413,156
Effective search space: 3510516445000
Effective search space used: 3510516445000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)