Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689188.1| PREDICTED: azurocidin 1 preproprotein-like [... 165 3e-41
Alignment gi|NP_001099123.1| neutrophil elastase [Bos taurus]. 103 2e-22
Alignment gi|XP_002689189.1| PREDICTED: proteinase 3 (predicted)-like [Bo... 97 1e-20
Alignment gi|XP_002689208.1| PREDICTED: granzyme M-like [Bos taurus]. 81 8e-16
Alignment gi|XP_593377.3| PREDICTED: granzyme M-like [Bos taurus]. 81 8e-16
Alignment gi|NP_001192888.1| granzyme K [Bos taurus]. 78 7e-15
Alignment gi|XP_002696377.1| PREDICTED: granzyme K (granzyme 3; tryptase ... 78 7e-15
Alignment gi|XP_002696692.1| PREDICTED: granzyme B (granzyme 2, cytotoxic... 70 2e-12
Alignment gi|XP_585453.2| PREDICTED: granzyme B (granzyme 2, cytotoxic T-... 70 2e-12
Alignment gi|XP_002696734.1| PREDICTED: granzyme H-like [Bos taurus]. 69 4e-12
>ref|XP_002689188.1| PREDICTED: azurocidin 1 preproprotein-like [Bos taurus].
Length = 246
Score = 165 bits (418), Expect = 3e-41
Identities = 79/104 (75%), Positives = 92/104 (88%)
Frame = +2
Query: 59 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 238
TSR G A L DIVGGR+A+PQE PFLASIQ QGR FC GAL+HP FVLTAASCF+ +N+G
Sbjct: 16 TSRAGSAPLVDIVGGRKARPQELPFLASIQNQGRHFCGGALIHPNFVLTAASCFQSRNTG 75
Query: 239 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
A+VVLGAYDLR++E+SRQTF IRS+S+NGYDP+QNLNDVLLLQ
Sbjct: 76 IATVVLGAYDLRRRERSRQTFFIRSVSENGYDPQQNLNDVLLLQ 119
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/79 (59%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +3
Query: 369 RVLNVTVT-SNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXX 545
RVLNVTVT +N C P ++C GV +RRG I QGD GTPLVCNGLA GVA
Sbjct: 167 RVLNVTVTPANQCRPNNVCTGVLTRRGGICQGDGGTPLVCNGLAHGVASWSRGPCGRGTD 226
Query: 546 XXXXVALFRNWIDSVLNNP 602
VALFRNWIDSV+N P
Sbjct: 227 FFARVALFRNWIDSVINQP 245
>ref|NP_001099123.1| neutrophil elastase [Bos taurus].
Length = 267
Score = 103 bits (256), Expect = 2e-22
Identities = 49/100 (49%), Positives = 70/100 (70%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
G A ++IVGGR A+P +PF+AS+Q++G FC L+ FVL+AA C G N S V
Sbjct: 23 GPALASEIVGGRAARPHAWPFIASLQRRGGHFCGATLIARNFVLSAAHCLNGLNFRSVRV 82
Query: 251 VLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VLGA++LR+QE++RQ F +R + +NG+DP NDV++LQ
Sbjct: 83 VLGAHNLRRQERTRQMFRVRRVFENGFDPLSLQNDVVVLQ 122
Score = 51.6 bits (122), Expect = 7e-07
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 375 LNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGV--AXXXXXXXXXXXXX 548
LNVTV + C P ++C V RR I GD G PLVCNGL G+
Sbjct: 172 LNVTVVTGLCRPTNVCTLVPRRRAGICFGDSGGPLVCNGLVHGIDSFIRGGCGSGVFPDS 231
Query: 549 XXXVALFRNWIDSVL 593
VA F NWI+S++
Sbjct: 232 FASVAKFANWINSII 246
>ref|XP_002689189.1| PREDICTED: proteinase 3 (predicted)-like [Bos taurus].
Length = 256
Score = 97.1 bits (240), Expect = 1e-20
Identities = 50/101 (49%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQ-KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
G A +IVGGR AQP P++AS+Q G FC G LVHP FVLTAA C N
Sbjct: 23 GAARAVEIVGGREAQPHSRPYVASLQLASGSHFCGGTLVHPSFVLTAAHCLNNLNPQRVR 82
Query: 248 VVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VVLGA+ L+ E ++Q I + +N Y+P++ LNDVLLLQ
Sbjct: 83 VVLGAHRLQTPEPTQQRLGISRLFENNYNPQEKLNDVLLLQ 123
>ref|XP_002689208.1| PREDICTED: granzyme M-like [Bos taurus].
Length = 283
Score = 81.3 bits (199), Expect = 8e-16
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = +2
Query: 86 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 265
A I+GG P P++AS++ QG+ C G L+ R+V++AA CF G++ G+ VVLGA+
Sbjct: 31 AQIIGGHEVTPHSRPYMASVKFQGQHHCGGFLLRARWVVSAAHCFSGRDPGTGLVVLGAH 90
Query: 266 DLRQQEQSRQTFSIRS-ISQNGYDPRQNLNDVLLLQ 370
LR +E ++Q FSI + I+ Y P + +D+ LLQ
Sbjct: 91 ALRTKEATQQVFSISAVITHPDYQPTTHTSDICLLQ 126
>ref|XP_593377.3| PREDICTED: granzyme M-like [Bos taurus].
Length = 303
Score = 81.3 bits (199), Expect = 8e-16
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = +2
Query: 86 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 265
A I+GG P P++AS++ QG+ C G L+ R+V++AA CF G++ G+ VVLGA+
Sbjct: 31 AQIIGGHEVTPHSRPYMASVKFQGQHHCGGFLLRARWVVSAAHCFSGRDPGTGLVVLGAH 90
Query: 266 DLRQQEQSRQTFSIRS-ISQNGYDPRQNLNDVLLLQ 370
LR +E ++Q FSI + I+ Y P + +D+ LLQ
Sbjct: 91 ALRTKEATQQVFSISAVITHPDYQPTTHTSDICLLQ 126
>ref|NP_001192888.1| granzyme K [Bos taurus].
Length = 264
Score = 78.2 bits (191), Expect = 7e-15
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 265
+I+GGR P PF+AS+Q G C G L+HP++VLTAA C R S S+ VVLGA+
Sbjct: 26 EIIGGREVSPHSRPFMASLQYGGDHICGGVLIHPQWVLTAAHCHLRFAKSQSSKVVLGAH 85
Query: 266 DLRQQEQSRQTFSIRS-ISQNGYDPRQNLNDVLLLQ 370
L + E S+QTF I+ I G+ ND++L++
Sbjct: 86 SLSKNEASKQTFEIKKFIRFPGFALAPKSNDIMLVK 121
>ref|XP_002696377.1| PREDICTED: granzyme K (granzyme 3; tryptase II)-like [Bos taurus].
Length = 264
Score = 78.2 bits (191), Expect = 7e-15
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 265
+I+GGR P PF+AS+Q G C G L+HP++VLTAA C R S S+ VVLGA+
Sbjct: 26 EIIGGREVSPHSRPFMASLQYGGDHICGGVLIHPQWVLTAAHCHLRFAKSQSSKVVLGAH 85
Query: 266 DLRQQEQSRQTFSIRS-ISQNGYDPRQNLNDVLLLQ 370
L + E S+QTF I+ I G+ ND++L++
Sbjct: 86 SLSKNEASKQTFEIKKFIRFPGFALAPKSNDIMLVK 121
>ref|XP_002696692.1| PREDICTED: granzyme B (granzyme 2, cytotoxic
T-lymphocyte-associated serine esterase 1)-like [Bos
taurus].
Length = 246
Score = 70.1 bits (170), Expect = 2e-12
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQKQGRPF---CAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GG A+P P++A +Q + C G LV FVLTAA C N S
Sbjct: 16 AKAGEIIGGHEAKPHSRPYMAYLQYWNQDVQSRCGGFLVRQDFVLTAAHC----NGSSIK 71
Query: 248 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
V LGA++++QQE+++Q + R+IS Y+P+ ND++LL+ + + V P
Sbjct: 72 VTLGAHNIKQQERTQQVIRVRRAISHPDYNPKNFSNDIMLLKLERKAKQTSAVKP 126
>ref|XP_585453.2| PREDICTED: granzyme B (granzyme 2, cytotoxic
T-lymphocyte-associated serine esterase 1)-like [Bos
taurus].
Length = 246
Score = 70.1 bits (170), Expect = 2e-12
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQKQGRPF---CAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GG A+P P++A +Q + C G LV FVLTAA C N S
Sbjct: 16 AKAGEIIGGHEAKPHSRPYMAYLQYWNQDVQSRCGGFLVRQDFVLTAAHC----NGSSIK 71
Query: 248 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
V LGA++++QQE+++Q + R+IS Y+P+ ND++LL+ + + V P
Sbjct: 72 VTLGAHNIKQQERTQQVIRVRRAISHPDYNPKNFSNDIMLLKLERKAKQTSAVKP 126
>ref|XP_002696734.1| PREDICTED: granzyme H-like [Bos taurus].
Length = 245
Score = 68.9 bits (167), Expect = 4e-12
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPF---CAGALVHPRFVLTAASCFRGKNSGSASVVLG 259
+I+GG A+P P++A +Q G C G L+ FVLTAA C S +V LG
Sbjct: 19 EIIGGHEAKPHSRPYMAFVQFLGEKSWKRCGGVLIQKDFVLTAAHC----RGSSINVTLG 74
Query: 260 AYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
A++++QQE+++Q + R+I Y+P+ ND++LLQ + + V P
Sbjct: 75 AHNIKQQERTQQVIQVKRAIHHPDYNPKTFSNDIMLLQLERKAKQTSAVKP 125
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,686,903
Number of extensions: 902472
Number of successful extensions: 4804
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 4731
Number of HSP's successfully gapped: 59
Length of query: 252
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 152
Effective length of database: 14,372,574
Effective search space: 2184631248
Effective search space used: 2184631248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003378.1| neutrophil elastase [Canis lupus familiaris]. 105 6e-23
Alignment gi|XP_850688.1| PREDICTED: similar to Cathepsin G precursor (CG... 69 4e-12
Alignment gi|XP_546318.2| PREDICTED: similar to Granzyme K precursor (Gra... 69 6e-12
Alignment gi|XP_547751.2| PREDICTED: similar to Granzyme H precursor (Cyt... 68 8e-12
Alignment gi|XP_542217.2| PREDICTED: similar to protease, serine-like 1 [... 68 1e-11
Alignment gi|XP_547752.2| PREDICTED: similar to Granzyme B precursor (T-c... 63 3e-10
Alignment gi|XP_542213.2| PREDICTED: similar to Complement factor D precu... 62 7e-10
Alignment gi|XP_544335.2| PREDICTED: similar to Granzyme A precursor (Cyt... 57 2e-08
Alignment gi|NP_001041498.1| coagulation factor VII [Canis lupus familiar... 56 4e-08
Alignment gi|XP_853830.1| PREDICTED: similar to chymotrypsin-like [Canis ... 55 7e-08
>ref|NP_001003378.1| neutrophil elastase [Canis lupus familiaris].
Length = 282
Score = 105 bits (261), Expect = 6e-23
Identities = 48/100 (48%), Positives = 72/100 (72%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
G A ++IVGGR AQP +PF+ S+Q++G FC G L+ P FV++AA C G N S V
Sbjct: 24 GPALASEIVGGRPAQPHAWPFMVSLQRRGGHFCGGTLIAPNFVMSAAHCVDGLNFRSVVV 83
Query: 251 VLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VLGA+DL ++E +RQ F+++ + +NG+DP + +ND++LLQ
Sbjct: 84 VLGAHDLGERESTRQLFAVQRVFENGFDPVRLVNDIVLLQ 123
Score = 55.1 bits (131), Expect = 7e-08
Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 324 TAMTPGRI*TMCCCCRVLNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQG 503
TA P RI + LNVTV + C ++C V RR I GD G PLVCNGL QG
Sbjct: 162 TAQPPPRI------LQELNVTVVTTLCRRSNVCTLVPRRRAGICFGDSGGPLVCNGLIQG 215
Query: 504 V--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA 608
+ VA F +WI+S++ PPA
Sbjct: 216 IDSFIRGSCASGFFPDAFAPVAQFVDWINSIIRRPPA 252
>ref|XP_850688.1| PREDICTED: similar to Cathepsin G precursor (CG) [Canis
familiaris].
Length = 312
Score = 69.3 bits (168), Expect = 4e-12
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQKQ----GRPFCAGALVHPRFVLTAASCFRGKNSGSA 244
A DI+GGR A+P P++A +Q + G C G LV FVLTAA C+ +
Sbjct: 16 AGAGDIIGGREARPHSRPYMAYLQIRSPNGGSSACGGFLVREDFVLTAAHCWGSR----I 71
Query: 245 SVVLGAYDLRQQEQSRQ-TFSIRSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
+V LGA+D+ ++E+ +Q T + R+I Y+P+ ND++LLQ A R + V P
Sbjct: 72 AVTLGAHDVGRRERVQQRTTARRAIRHPRYNPQTTANDIMLLQLADRMRRTRQVRP 127
>ref|XP_546318.2| PREDICTED: similar to Granzyme K precursor (Granzyme-3)
(NK-tryptase-2) (NK-TRYP-2) [Canis familiaris].
Length = 268
Score = 68.6 bits (166), Expect = 6e-12
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCF-RGKNSGSASVVLGAY 265
+I+GGR PF+ASIQ +G+ C G L+HP++VL+AA C R + V+LGA+
Sbjct: 26 EIIGGREVPAHSRPFMASIQYRGQHLCGGVLIHPQWVLSAAHCRPRHEKVQLFKVILGAH 85
Query: 266 DLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ 370
L + E S+QTF + + I + + ND++L++
Sbjct: 86 SLSKNEASKQTFEVEKFIPFSRFISHHKSNDIMLIK 121
>ref|XP_547751.2| PREDICTED: similar to Granzyme H precursor (Cytotoxic T-lymphocyte
proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X)
(Cytotoxic serine protease-C) (CSP-C) [Canis
familiaris].
Length = 250
Score = 68.2 bits (165), Expect = 8e-12
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQ-------KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
I+GG A+P P++A +Q K + C G LVH FVLTAA C+ S V
Sbjct: 21 IIGGHEAKPHSRPYMAFVQFLDKDNKKDSKKRCGGVLVHKDFVLTAAHCW----GSSIKV 76
Query: 251 VLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLL 367
LGA+++++QE+++Q + R+I Y P+ ND++LL
Sbjct: 77 TLGAHNIKEQEKTQQVIPVRRAIPHPDYSPKNYSNDIMLL 116
>ref|XP_542217.2| PREDICTED: similar to protease, serine-like 1 [Canis familiaris].
Length = 536
Score = 67.8 bits (164), Expect = 1e-11
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +2
Query: 86 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 265
A I+GG P P++ S++ G+ C G L+ R+V++AA CF ++ VVLGA+
Sbjct: 279 ARIIGGHEVTPHSRPYMVSVKFGGQHQCGGFLLRARWVVSAAHCFSDRDPRMGLVVLGAH 338
Query: 266 DLRQQEQSRQTFSIRSISQN-GYDPRQNLNDVLLLQ 370
LR E ++Q F I ++ ++ Y P + ND+ LLQ
Sbjct: 339 VLRTWEPTQQVFGISAVIRHPDYQPATHANDICLLQ 374
>ref|XP_547752.2| PREDICTED: similar to Granzyme B precursor (T-cell serine protease
1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte
protease) (SECT) (Granzyme-2) (Cathepsin G-like 1)
(CTSGL1) (CTLA-1) (Human lymphocyte protein) (HLP) (C11)
[Canis familiaris].
Length = 388
Score = 62.8 bits (151), Expect = 3e-10
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQG---RPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 259
+I+GG A+P P++A +Q + + C G L+ FVLTAA C+ S V LG
Sbjct: 151 EIIGGHEAKPHSRPYMALLQIENPSRQIKCGGFLIQAMFVLTAAHCW----GSSIKVTLG 206
Query: 260 AYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLL 367
A+++++QE+++Q + R+I Y P+ ND++LL
Sbjct: 207 AHNIKEQEKTQQVIPVRRAIPHPDYSPKNYSNDIMLL 243
>ref|XP_542213.2| PREDICTED: similar to Complement factor D precursor (C3 convertase
activator) (Properdin factor D) (Adipsin) [Canis
familiaris].
Length = 287
Score = 61.6 bits (148), Expect = 7e-10
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
I+GG A+ P++AS+Q G+ C G LV R+VL+AA C G V+LGA+ L
Sbjct: 29 ILGGSEAESHARPYMASVQVDGKHVCGGFLVSERWVLSAAHCLEDVADGKVRVLLGAHSL 88
Query: 272 RQQEQSRQTFSIRSISQNGYDPRQNL-NDVLLLQ 370
Q E S++ + + + R + +D+LLLQ
Sbjct: 89 SQPEPSKRWYDVLRAVPHPDSRRDTIEHDLLLLQ 122
>ref|XP_544335.2| PREDICTED: similar to Granzyme A precursor (Cytotoxic T-lymphocyte
proteinase 1) (Hanukkah factor) (H factor) (HF)
(Granzyme-1) (CTL tryptase) [Canis familiaris].
Length = 260
Score = 56.6 bits (135), Expect = 2e-08
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYD 268
+I+GG + P P++ ++ G+ CAGAL+ +VLTAA C KNS V+LGA+
Sbjct: 28 EIIGGNQVSPHSRPYMVLLK--GKKICAGALIAEDWVLTAAHCVLDKNS---QVILGAHS 82
Query: 269 LRQQEQSRQ-TFSIRSISQNGYDPRQNLNDVLLLQ 370
+ ++E +Q F + +DP + D+ LLQ
Sbjct: 83 ITKKESEKQIMFVKKEFPYPCFDPDTHEGDLKLLQ 117
>ref|NP_001041498.1| coagulation factor VII [Canis lupus familiaris].
Length = 446
Score = 55.8 bits (133), Expect = 4e-08
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +2
Query: 65 RVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCF-RGKNSGS 241
R+G IVGG+ E P+ A+++ G+ C G L+ +V++AA CF R KN +
Sbjct: 184 RIGSNPQGRIVGGKVCPKGECPWQAAVKVDGKLLCGGTLIDAAWVVSAAHCFERIKNWKN 243
Query: 242 ASVVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLL 367
+VVLG +DL + + Q + R I + Y P + +D+ LL
Sbjct: 244 LTVVLGEHDLSEDDGDEQERHVARVIVPDKYIPLKTNHDIALL 286
>ref|XP_853830.1| PREDICTED: similar to chymotrypsin-like [Canis familiaris].
Length = 264
Score = 55.1 bits (131), Expect = 7e-08
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQ-KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYD 268
IV G A P +P+ S+Q K G FC G+L+ +V+TAA C G VVLG YD
Sbjct: 34 IVNGENAVPGSWPWQVSLQDKSGFHFCGGSLISQSWVVTAAHC--NVIPGRHVVVLGEYD 91
Query: 269 LRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
+ Q SI ++I+ ++P ND+ LL+ A R + +SP
Sbjct: 92 RSSNAEPLQVLSISKAITYPSWNPTTLNNDLTLLKLASPARYTQRISP 139
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,950,341
Number of extensions: 926484
Number of successful extensions: 4883
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 4830
Number of HSP's successfully gapped: 32
Length of query: 252
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 152
Effective length of database: 15,540,904
Effective search space: 2362217408
Effective search space used: 2362217408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001691.1| azurocidin preproprotein [Homo sapiens]. 152 4e-37
Alignment gi|NP_002768.3| myeloblastin [Homo sapiens]. 102 5e-22
Alignment gi|NP_001963.1| neutrophil elastase preproprotein [Homo sapiens]. 100 1e-21
Alignment gi|NP_002095.1| granzyme K precursor [Homo sapiens]. 71 9e-13
Alignment gi|NP_219491.1| granzyme H precursor [Homo sapiens]. 68 1e-11
Alignment gi|NP_999875.1| serine protease 57 precursor [Homo sapiens]. 67 2e-11
Alignment gi|NP_001919.2| complement factor D preproprotein [Homo sapiens]. 65 5e-11
Alignment gi|NP_004122.2| granzyme B precursor [Homo sapiens]. 64 1e-10
Alignment gi|NP_001902.1| cathepsin G preproprotein [Homo sapiens]. 64 1e-10
Alignment gi|NP_005308.1| granzyme M precursor [Homo sapiens]. 62 7e-10
>ref|NP_001691.1| azurocidin preproprotein [Homo sapiens].
Length = 251
Score = 152 bits (383), Expect = 4e-37
Identities = 73/105 (69%), Positives = 92/105 (87%), Gaps = 1/105 (0%)
Frame = +2
Query: 59 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 238
+SR G + L DIVGGR+A+P++FPFLASIQ QGR FC GAL+H RFV+TAASCF+ +N G
Sbjct: 16 SSRAGSSPLLDIVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPG 75
Query: 239 SASVVLGAYDLRQQE-QSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
++VVLGAYDLR++E QSRQTFSI S+S+NGYDP+QNLND++LLQ
Sbjct: 76 VSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQ 120
Score = 80.9 bits (198), Expect = 1e-15
Identities = 42/79 (53%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 369 RVLNVTVT-SNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXX 545
R +NVTVT + C P ++C GV +RRG I GD GTPLVC GLA GVA
Sbjct: 168 RFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLVCEGLAHGVASFSLGPCGRGPD 227
Query: 546 XXXXVALFRNWIDSVLNNP 602
VALFR+WID VLNNP
Sbjct: 228 FFTRVALFRDWIDGVLNNP 246
>ref|NP_002768.3| myeloblastin [Homo sapiens].
Length = 256
Score = 102 bits (253), Expect = 5e-22
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRP---FCAGALVHPRFVLTAASCFRGKNSGS 241
G A A+IVGG AQP P++AS+Q +G P FC G L+HP FVLTAA C R
Sbjct: 21 GAARAAEIVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRL 80
Query: 242 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
+VVLGA+++R QE ++Q FS+ + N YD LNDVLL+Q
Sbjct: 81 VNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDVLLIQ 123
>ref|NP_001963.1| neutrophil elastase preproprotein [Homo sapiens].
Length = 267
Score = 100 bits (249), Expect = 1e-21
Identities = 46/100 (46%), Positives = 69/100 (69%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
G A ++IVGGRRA+P +PF+ S+Q +G FC L+ P FV++AA C N + V
Sbjct: 23 GTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRV 82
Query: 251 VLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VLGA++L ++E +RQ F+++ I +NGYDP LND+++LQ
Sbjct: 83 VLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQ 122
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +3
Query: 375 LNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVA--XXXXXXXXXXXXX 548
LNVTV ++ C ++C V R+ + GD G+PLVCNGL G+A
Sbjct: 172 LNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDA 231
Query: 549 XXXVALFRNWIDSVL----NNP-PA*RIPSPS 629
VA F NWIDS++ +NP P R P P+
Sbjct: 232 FAPVAQFVNWIDSIIQRSEDNPCPHPRDPDPA 263
>ref|NP_002095.1| granzyme K precursor [Homo sapiens].
Length = 264
Score = 71.2 bits (173), Expect = 9e-13
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 265
+I+GG+ P PF+ASIQ G C G L+ P++VLTAA C +R S +VVLGA+
Sbjct: 26 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 85
Query: 266 DLRQQEQSRQTFSIRS---ISQNGYDPRQNLNDVLLLQ 370
L + E S+QT I+ S+ DP+ ND++L++
Sbjct: 86 SLSKNEASKQTLEIKKFIPFSRVTSDPQS--NDIMLVK 121
>ref|NP_219491.1| granzyme H precursor [Homo sapiens].
Length = 246
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 259
+I+GG A+P P++A +Q ++ R C G LV FVLTAA C S +V LG
Sbjct: 20 EIIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLG 75
Query: 260 AYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ 370
A+++++QE+++Q + R I Y+P+ ND++LLQ
Sbjct: 76 AHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQ 113
>ref|NP_999875.1| serine protease 57 precursor [Homo sapiens].
Length = 283
Score = 66.6 bits (161), Expect = 2e-11
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +2
Query: 86 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 265
A I+GG P P++AS++ G+ C G L+ R+V++AA CF ++ + VVLGA+
Sbjct: 32 AQIIGGHEVTPHSRPYMASVRFGGQHHCGGFLLRARWVVSAAHCFSHRDLRTGLVVLGAH 91
Query: 266 DLRQQEQSRQTFSIRSISQN-GYDPRQNLNDVLLLQ 370
L E ++Q F I +++ + Y P + ND+ LL+
Sbjct: 92 VLSTAEPTQQVFGIDALTTHPDYHPMTHANDICLLR 127
>ref|NP_001919.2| complement factor D preproprotein [Homo sapiens].
Length = 253
Score = 65.5 bits (158), Expect = 5e-11
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
I+GGR A+ P++AS+Q G C G LV ++VL+AA C G V+LGA+ L
Sbjct: 26 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 85
Query: 272 RQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ 370
Q E S++ + + R++ P +D+LLLQ
Sbjct: 86 SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQ 119
>ref|NP_004122.2| granzyme B precursor [Homo sapiens].
Length = 247
Score = 64.3 bits (155), Expect = 1e-10
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GG A+P P++A + ++ C G L+ FVLTAA C+ S +
Sbjct: 16 ADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSIN 71
Query: 248 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSPQR 415
V LGA+++++QE ++Q + R I Y+P+ ND++LLQ + + + V P R
Sbjct: 72 VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLR 128
>ref|NP_001902.1| cathepsin G preproprotein [Homo sapiens].
Length = 255
Score = 64.3 bits (155), Expect = 1e-10
Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GGR ++P P++A +Q Q G+ C G LV FVLTAA C+ + +
Sbjct: 16 AEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNIN 71
Query: 248 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
V LGA++++++E ++Q + R+I Y+ R ND++LLQ ++ R + V+P
Sbjct: 72 VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 126
>ref|NP_005308.1| granzyme M precursor [Homo sapiens].
Length = 257
Score = 61.6 bits (148), Expect = 7e-10
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +2
Query: 68 VGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
VG + I+GGR P P++AS+Q+ G C G LVHP++VLTAA C +
Sbjct: 18 VGSSFGTQIIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL-AQRMAQLR 76
Query: 248 VVLGAYDLRQQEQSRQTFSIRSISQN-GYDPRQNL-NDVLLLQ 370
+VLG + L + TF I++ Q+ Y P L ND+ LLQ
Sbjct: 77 LVLGLHTL---DSPGLTFHIKAAIQHPRYKPVPALENDLALLQ 116
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,254,077
Number of extensions: 900539
Number of successful extensions: 4452
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4398
Number of HSP's successfully gapped: 35
Length of query: 252
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 152
Effective length of database: 15,000,764
Effective search space: 2280116128
Effective search space used: 2280116128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056594.2| neutrophil elastase precursor [Mus musculus]. 110 9e-25
Alignment gi|NP_035308.2| myeloblastin precursor [Mus musculus]. 98 6e-21
Alignment gi|NP_032222.1| granzyme K precursor [Mus musculus]. 74 9e-14
Alignment gi|NP_001036175.1| serine protease 57 precursor [Mus musculus]. 74 2e-13
Alignment gi|NP_031826.1| cathepsin G preproprotein [Mus musculus]. 67 1e-11
Alignment gi|NP_034501.2| granzyme C preproprotein [Mus musculus]. 64 2e-10
Alignment gi|NP_032530.1| granzyme M [Mus musculus]. 62 4e-10
Alignment gi|NP_034504.1| granzyme F precursor [Mus musculus]. 62 6e-10
Alignment gi|NP_038570.1| granzyme B(G,H) precursor [Mus musculus]. 60 1e-09
Alignment gi|NP_694692.1| granzyme N [Mus musculus]. 59 4e-09
>ref|NP_056594.2| neutrophil elastase precursor [Mus musculus].
Length = 265
Score = 110 bits (276), Expect = 9e-25
Identities = 51/100 (51%), Positives = 74/100 (74%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
G A ++IVGGR A+P +PF+AS+Q++G FC L+ FV++AA C G N S V
Sbjct: 22 GPALASEIVGGRPARPHAWPFMASLQRRGGHFCGATLIARNFVMSAAHCVNGLNFRSVQV 81
Query: 251 VLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VLGA+DLR+QE++RQTFS++ I +NG+DP Q LND++++Q
Sbjct: 82 VLGAHDLRRQERTRQTFSVQRIFENGFDPSQLLNDIVIIQ 121
>ref|NP_035308.2| myeloblastin precursor [Mus musculus].
Length = 254
Score = 98.2 bits (243), Expect = 6e-21
Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGS 241
G + IVGG A+P P++AS+Q G FC G L+HPRFVLTAA C + +
Sbjct: 23 GAVQASKIVGGHEARPHSRPYVASLQLSRFPGSHFCGGTLIHPRFVLTAAHCLQDISWQL 82
Query: 242 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
+VVLGA+DL E +Q F+I + QN Y+P +NLNDVLLLQ
Sbjct: 83 VTVVLGAHDLLSSEPEQQKFTISQVFQNNYNPEENLNDVLLLQ 125
>ref|NP_032222.1| granzyme K precursor [Mus musculus].
Length = 263
Score = 74.3 bits (181), Expect = 9e-14
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG-SASVVLGAY 265
+I+GGR QP PF+ASIQ + + C G L+HP++VLTAA C+ G S +VVLGA+
Sbjct: 25 EIIGGREVQPHSRPFMASIQYRSKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAH 84
Query: 266 DLRQQEQSRQTFSIR 310
L + E +QTF I+
Sbjct: 85 SLSKNEPMKQTFEIK 99
>ref|NP_001036175.1| serine protease 57 precursor [Mus musculus].
Length = 284
Score = 73.6 bits (179), Expect = 2e-13
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
IVGG P P++AS+ +G +C G L+H +V++AA CF ++ VVLGA+ L
Sbjct: 40 IVGGHEVTPHSRPYMASVSFEGHHYCGGFLIHTHWVVSAAHCFSDRDPSMGLVVLGAHAL 99
Query: 272 RQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ 370
E ++QTFSI ++S + P ND+ LL+
Sbjct: 100 LAPEPTQQTFSIAAAVSHPDFQPATQANDICLLR 133
>ref|NP_031826.1| cathepsin G preproprotein [Mus musculus].
Length = 261
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASI---QKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGA 262
I+GGR A+P +P++A + +G C G LV FVLTAA C S +V LGA
Sbjct: 21 IIGGREARPHSYPYMAFLLIQSPEGLSACGGFLVREDFVLTAAHCL----GSSINVTLGA 76
Query: 263 YDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ---GAQCHRDLKPVS 406
++++ +E+++Q ++ R+I Y+P+ ND++LLQ A+ +KPV+
Sbjct: 77 HNIQMRERTQQLITVLRAIRHPDYNPQNIRNDIMLLQLRRRARRSGSVKPVA 128
>ref|NP_034501.2| granzyme C preproprotein [Mus musculus].
Length = 248
Score = 63.5 bits (153), Expect = 2e-10
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQ--KQG--RPFCAGALVHPRFVLTAASCFRGKNSGSASVVL 256
+I+GG P P++A + K G + FC G LV +FVLTAA C S +V L
Sbjct: 20 EIIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC----KGSSMTVTL 75
Query: 257 GAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLL---QGAQCHRDLKPVS-PQRHV 421
GA++++ +E+++Q + ++I Y+P ND++LL + A+ R ++P++ P+R+
Sbjct: 76 GAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNA 135
Query: 422 H 424
H
Sbjct: 136 H 136
>ref|NP_032530.1| granzyme M [Mus musculus].
Length = 264
Score = 62.4 bits (150), Expect = 4e-10
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
I+GGR A P P++AS+QK C G LVH ++VLTAA C + + +VLG ++L
Sbjct: 27 IIGGREAVPHSRPYMASLQKAKSHVCGGVLVHRKWVLTAAHCL-SEPLQNLKLVLGLHNL 85
Query: 272 RQQEQSRQTFSIR-SISQNGYDPRQNLNDVLLL---QGAQCHRDLKPVSPQR 415
+ TF IR +I GY+ + ND+ LL + Q +++KP++ R
Sbjct: 86 HDLQDPGLTFYIREAIKHPGYNHKYE-NDLALLKLDRRVQPSKNVKPLALPR 136
>ref|NP_034504.1| granzyme F precursor [Mus musculus].
Length = 248
Score = 61.6 bits (148), Expect = 6e-10
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQ----KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVL 256
+I+GG +P P++A ++ R C G LV FVLTAA C S V+L
Sbjct: 20 EIIGGHEVKPHSRPYMARVRFVKDNGKRHSCGGFLVQDYFVLTAAHC----TGSSMRVIL 75
Query: 257 GAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
GA+++R +E+++Q + ++I YD + N +D++LL+ + K V P
Sbjct: 76 GAHNIRAKEETQQIIPVAKAIPHPAYDDKDNTSDIMLLKLESKAKRTKAVRP 127
>ref|NP_038570.1| granzyme B(G,H) precursor [Mus musculus].
Length = 247
Score = 60.5 bits (145), Expect = 1e-09
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 259
+I+GG +P P++A + +Q C G L+ FVLTAA C +V LG
Sbjct: 20 EIIGGHEVKPHSRPYMALLSIKDQQPEAICGGFLIREDFVLTAAHC----EGSIINVTLG 75
Query: 260 AYDLRQQEQSRQTF-SIRSISQNGYDPRQNLNDVLLLQ---GAQCHRDLKPVS-PQRHVH 424
A+++++QE+++Q ++ I Y+P+ ND++LL+ A+ R ++P++ P+R+V+
Sbjct: 76 AHNIKEQEKTQQVIPMVKCIPHPDYNPKTFSNDIMLLKLKSKAKRTRAVRPLNLPRRNVN 135
>ref|NP_694692.1| granzyme N [Mus musculus].
Length = 248
Score = 58.9 bits (141), Expect = 4e-09
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASI---QKQG-RPFCAGALVHPRFVLTAASCFRGKNSGSASVVL 256
+++GG +P P++A + + G C G LV FVLTAA C S +V L
Sbjct: 20 EVIGGHEVKPHSRPYMALVVFLKVNGIGSSCGGFLVQDYFVLTAAHCI----GSSMTVTL 75
Query: 257 GAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ---GAQCHRDLKPV 403
GA++LR QE+++Q + +++ Y+P + ND++LL+ A+ RD++P+
Sbjct: 76 GAHNLRAQEETQQIIPVNKALPHPDYNPLDHTNDIMLLKLESKAKGTRDVRPL 128
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,356,666
Number of extensions: 734611
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 3514
Number of HSP's successfully gapped: 39
Length of query: 252
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 153
Effective length of database: 12,643,995
Effective search space: 1934531235
Effective search space used: 1934531235
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123035.1| PREDICTED: azurocidin-like [Sus scrofa]. 207 6e-54
Alignment gi|XP_003123034.1| PREDICTED: neutrophil elastase-like [Sus scr... 100 6e-22
Alignment gi|XP_003354013.1| PREDICTED: myeloblastin-like [Sus scrofa]. 100 1e-21
Alignment gi|NP_001137183.1| granzyme K [Sus scrofa]. 80 1e-15
Alignment gi|XP_001926799.1| PREDICTED: cathepsin G-like [Sus scrofa]. 72 4e-13
Alignment gi|NP_001137182.1| granzyme B [Sus scrofa]. 66 2e-11
Alignment gi|XP_003123033.1| PREDICTED: complement factor D [Sus scrofa]. 66 2e-11
Alignment gi|NP_001137165.1| granzyme H [Sus scrofa]. 64 9e-11
Alignment gi|XP_003128587.2| PREDICTED: mast cell protease 3-like [Sus sc... 56 2e-08
Alignment gi|NP_001137181.1| granzyme A [Sus scrofa]. 55 3e-08
>ref|XP_003123035.1| PREDICTED: azurocidin-like [Sus scrofa].
Length = 246
Score = 207 bits (526), Expect = 6e-54
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +2
Query: 59 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 238
TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG
Sbjct: 16 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 75
Query: 239 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ
Sbjct: 76 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 119
Score = 129 bits (324), Expect = 2e-30
Identities = 64/80 (80%), Positives = 64/80 (80%)
Frame = +3
Query: 369 RVLNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXX 548
RVLNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVA
Sbjct: 167 RVLNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVASFLRRRFRRSSGF 226
Query: 549 XXXVALFRNWIDSVLNNPPA 608
VALFRNWIDSVLNNPPA
Sbjct: 227 FTRVALFRNWIDSVLNNPPA 246
>ref|XP_003123034.1| PREDICTED: neutrophil elastase-like [Sus scrofa].
Length = 267
Score = 100 bits (250), Expect = 6e-22
Identities = 48/100 (48%), Positives = 69/100 (69%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 250
G A ++IVGGR A+P +PF+AS+Q++G FC G L+ FVL+AA C G N S V
Sbjct: 23 GPALASEIVGGRPARPHAWPFMASLQRRGSHFCGGTLIARNFVLSAAHCLNGLNFRSVRV 82
Query: 251 VLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
VLGA++LR+ E +RQ F I+ + +NG+DP ND+++LQ
Sbjct: 83 VLGAHNLRRGESTRQKFRIQRVFENGFDPMTLRNDIVVLQ 122
Score = 48.1 bits (113), Expect = 5e-06
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 375 LNVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGV--AXXXXXXXXXXXXX 548
LNVTV + C P ++C V R+ I GD G PLVCNGL QG+
Sbjct: 172 LNVTVVTALCRPTNVCTLVPGRQAGICFGDSGGPLVCNGLVQGIDSFIRGGCGSGLFPDT 231
Query: 549 XXXVALFRNWIDSVL 593
A F +WI+S++
Sbjct: 232 FASTAKFADWINSII 246
>ref|XP_003354013.1| PREDICTED: myeloblastin-like [Sus scrofa].
Length = 268
Score = 100 bits (248), Expect = 1e-21
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Frame = +2
Query: 71 GLATLADIVGGRRAQPQEFPFLASIQKQGRP---FCAGALVHPRFVLTAASCFRGKNSGS 241
G A +IVGG+ AQP P++AS+Q P FC G L+HP FVLTAA C N
Sbjct: 23 GAARAVEIVGGQEAQPHSRPYVASLQLPWPPNSHFCGGTLIHPSFVLTAAHCLNTMNPTR 82
Query: 242 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQ 370
+VVLGA++L+ E ++Q F I + +N YDP+Q LNDVLLLQ
Sbjct: 83 VNVVLGAHNLQTPEPTQQIFRIARLFENNYDPQQKLNDVLLLQ 125
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +3
Query: 327 AMTPGRI*TMCCCCRVL---NVTVTSNPCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLA 497
AM GR+ T+ RVL NVTV + C P+++C V R I GD G PL+C+G+
Sbjct: 156 AMGWGRLGTLEPQPRVLQELNVTVVTFLCRPQNVCTFVPQRSAGICFGDSGGPLICDGVL 215
Query: 498 QGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNN 599
QGV VAL+ NWI SVL +
Sbjct: 216 QGVDSFVIRGCATGQFPDFFARVALYVNWIHSVLRS 251
>ref|NP_001137183.1| granzyme K [Sus scrofa].
Length = 264
Score = 80.1 bits (196), Expect = 1e-15
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 265
+IVGGR P PF+ASIQ G C G L+HP++VLTAA C +R SA VVLGA+
Sbjct: 26 EIVGGREVSPHSKPFMASIQYSGHHICGGVLIHPQWVLTAAHCYYRFAKGQSAKVVLGAH 85
Query: 266 DLRQQEQSRQTFSIRS---ISQNGYDPRQNLNDVLLLQ 370
L + E S+QTF I+ + DP+ ND++L++
Sbjct: 86 SLSKNEASKQTFEIKKFIPFPRFTSDPKS--NDIMLVE 121
>ref|XP_001926799.1| PREDICTED: cathepsin G-like [Sus scrofa].
Length = 255
Score = 71.6 bits (174), Expect = 4e-13
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GG+ A+P P++A + QG+ C G LV FV+TAA CF
Sbjct: 16 ARAGEIIGGQEARPHSRPYMAYMHFQSAQGQKTCGGFLVRKDFVMTAAHCF----GRQTV 71
Query: 248 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQGAQCHRDLKPVSP 409
V+LGA+++R+ E+++Q S+ R+I Y+P +LND++LLQ A R + V P
Sbjct: 72 VILGAHNIRRFERTQQRISVLRAIPHPRYNPYNHLNDIMLLQLANRTRQNRFVRP 126
>ref|NP_001137182.1| granzyme B [Sus scrofa].
Length = 248
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Frame = +2
Query: 77 ATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGSAS 247
A +I+GG A+P P++A +Q Q R C G L+ FVLTAA C+ S +
Sbjct: 18 AEAGEIIGGHEAKPHSRPYMAYLQIQDQDNRSRCGGFLIREDFVLTAAHCW----GSSIN 73
Query: 248 VVLGAYDLRQQEQSRQTFSIR-SISQNGYDPRQNLNDVLLLQ 370
V LGA+++++QE+++Q +R +I Y+ ++ ND++LLQ
Sbjct: 74 VTLGAHNIKKQEETQQVIPVRKAIRHPDYNEKRISNDIMLLQ 115
>ref|XP_003123033.1| PREDICTED: complement factor D [Sus scrofa].
Length = 259
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
I+GG+ A+ E P++AS+Q G+ C G LV ++VL+AA C G V+LGA+ L
Sbjct: 27 ILGGQEAKSHERPYMASVQVNGKHVCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSL 86
Query: 272 RQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLL---QGAQCHRDLKPVSPQRHVH 424
Q E S++ + + R++ P +D+LLL + A+ ++P++ QR H
Sbjct: 87 SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDH 141
>ref|NP_001137165.1| granzyme H [Sus scrofa].
Length = 251
Score = 63.9 bits (154), Expect = 9e-11
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = +2
Query: 89 DIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 259
+I+GG A+P P++A ++ K+ C G LV FVLTAA C S +V LG
Sbjct: 24 EIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHC----RGSSINVTLG 79
Query: 260 AYDLRQQEQSRQTFSIR-SISQNGYDPRQNLNDVLLLQ 370
A+++++QE+++Q +R +I Y+ ++ ND++LLQ
Sbjct: 80 AHNIKKQEETQQVIPVRKAIRHPDYNEKRISNDIMLLQ 117
>ref|XP_003128587.2| PREDICTED: mast cell protease 3-like [Sus scrofa].
Length = 241
Score = 55.8 bits (133), Expect = 2e-08
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLA-SIQK-QGRP-FCAGALVHPRFVLTAASCFRGKNSGSASVVLGA 262
I+GG P P++A S+ K GR C G LV FVLTAA C+ S V LG
Sbjct: 21 IIGGHEVTPHSRPYMAYSVSKTSGRTSVCGGFLVSTNFVLTAAHCW----GSSIKVTLGG 76
Query: 263 YDLRQQEQSRQTFSIR-SISQNGYDPRQNLNDVLLLQ 370
++++++E+++Q ++ +I YD + ND++LLQ
Sbjct: 77 HNIQEKEETQQVIPVKNAICHPDYDSKICANDIMLLQ 113
>ref|NP_001137181.1| granzyme A [Sus scrofa].
Length = 258
Score = 55.5 bits (132), Expect = 3e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 92 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 271
I+GG P ++A I+ G CAGAL+ +VLTAA C G+ V+LGA+
Sbjct: 29 IIGGNEVSPHTRRYMALIE--GLKVCAGALIKENWVLTAAHC---DLKGNPQVILGAHST 83
Query: 272 RQQEQSRQTFSI-RSISQNGYDPRQNLNDVLLLQ 370
+E+ QTFSI ++I +DP+ D+ LLQ
Sbjct: 84 SHKEKYDQTFSIKKAIPYPCFDPQTFEGDLQLLQ 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,241,587
Number of extensions: 588146
Number of successful extensions: 3123
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3089
Number of HSP's successfully gapped: 31
Length of query: 252
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 155
Effective length of database: 8,928,923
Effective search space: 1383983065
Effective search space used: 1383983065
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007525
(756 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 363 9e-98
>Sscrofa_Chr02
|| Length = 162569375
Score = 363 bits (183), Expect = 9e-98
Identities = 193/195 (98%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 456 cagggagacagaggcacccccctcgtctgcaacggcctggcgcagggcgtggcctccttc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284784 cagggagacagaggcacccccctcgtctgcaacggcctggcgcagggcgtggcctccttc 78284725
Query: 516 ctccggaggcgtttccgcaggagctccggcttcttcacccgcgtggcgctcttcagaaac 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284724 ctccggaggcgtttccgcaggagctccggcttcttcacccgcgtggcgctcttcagaaat 78284665
Query: 576 tggattgattcagttctcaacaacccgccggcctgaaggatcccctcgccgagcccgtgg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284664 tggattgattcagttctcaacaacccgccggcctgaaggatcccctcgccgagcccgtgg 78284605
Query: 636 gaaggggggcctgtt 650
| |||||||||||||
Sbjct: 78284604 g-aggggggcctgtt 78284591
Score = 315 bits (159), Expect = 2e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 71 ggcttggccaccctggcagacattgtgggcggcaggagggcccagccgcaggagttcccg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287038 ggcttggccaccctggcagacattgtgggcggcaggagggcccagccgcaggagttcccg 78286979
Query: 131 tttctggcctccattcagaaacaagggaggcccttttgcgccggagccctggtccatccc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286978 tttctggcctccattcagaaacaagggaggcccttttgcgccggagccctggtccatccc 78286919
Query: 191 cgcttcgtcctgacagcggccagctgcttccgtggcaag 229
|||||||||||||||||||||||||||||||||||||||
Sbjct: 78286918 cgcttcgtcctgacagcggccagctgcttccgtggcaag 78286880
Score = 283 bits (143), Expect = 7e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 229 gaacagcggaagtgcctctgtggtgctgggggcctatgacctgaggcagcaggagcagtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286455 gaacagcggaagtgcctctgtggtgctgggggcctatgacctgaggcagcaggagcagtc 78286396
Query: 289 ccggcagacattctccatcaggagcatcagccagaacggctatgacccccggcagaatct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286395 ccggcagacattctccatcaggagcatcagccagaacggctatgacccccggcagaatct 78286336
Query: 349 gaacgatgtgctgctgctgcagg 371
|||||||||||||||||||||||
Sbjct: 78286335 gaacgatgtgctgctgctgcagg 78286313
Score = 180 bits (91), Expect = 7e-43
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 369 agggtgctcaatgtcaccgtgacctcaaacccgtgtctccccagagacatgtgcattggt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78285538 agggtgctcaatgtcaccgtgacctcaaacccgtgtctccccagagacatgtgcattggt 78285479
Query: 429 gtcttcagccgccggggccgcatcagccagg 459
|||||||||||||||||||||||||||||||
Sbjct: 78285478 gtcttcagccgccggggccgcatcagccagg 78285448
Score = 141 bits (71), Expect = 6e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 2 gctgttcccatcatgccagcactcagattcctggccctgctggccagcctgctggcaacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287342 gctgttcccatcatgccagcactcagattcctggccctgctggccagcctgctggcaacc 78287283
Query: 62 tccagggttgg 72
|||||||||||
Sbjct: 78287282 tccagggttgg 78287272
Score = 63.9 bits (32), Expect = 1e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 717 tcctggaccgctctgtcgaggctgtaataaaaaacctgtt 756
||||||||||||||||||||||||||||||| || |||||
Sbjct: 78284525 tcctggaccgctctgtcgaggctgtaataaagaagctgtt 78284486
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,389,116
Number of extensions: 408
Number of successful extensions: 408
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 6
Length of query: 756
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 735
Effective length of database: 2,808,413,156
Effective search space: 2064183669660
Effective search space used: 2064183669660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)