Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689188.1| PREDICTED: azurocidin 1 preproprotein-like [... 291 5e-79
Alignment gi|NP_001099123.1| neutrophil elastase [Bos taurus]. 154 1e-37
Alignment gi|XP_002689189.1| PREDICTED: proteinase 3 (predicted)-like [Bo... 136 3e-32
Alignment gi|XP_593377.3| PREDICTED: granzyme M-like [Bos taurus]. 104 1e-22
Alignment gi|XP_002689208.1| PREDICTED: granzyme M-like [Bos taurus]. 103 2e-22
Alignment gi|NP_001192888.1| granzyme K [Bos taurus]. 100 3e-21
Alignment gi|XP_002696377.1| PREDICTED: granzyme K (granzyme 3; tryptase ... 100 3e-21
Alignment gi|XP_002696692.1| PREDICTED: granzyme B (granzyme 2, cytotoxic... 98 1e-20
Alignment gi|XP_585453.2| PREDICTED: granzyme B (granzyme 2, cytotoxic T-... 98 1e-20
Alignment gi|NP_001098979.1| hypothetical protein LOC100125946 [Bos tauru... 97 2e-20
>ref|XP_002689188.1| PREDICTED: azurocidin 1 preproprotein-like [Bos taurus].
Length = 246
Score = 291 bits (746), Expect = 5e-79
Identities = 149/230 (64%), Positives = 169/230 (73%), Gaps = 1/230 (0%)
Frame = +1
Query: 145 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 324
TSR G A L DIVGGR+A+PQE PFLASIQ QGR FC GAL+HP FVLTAASCF+ +N+G
Sbjct: 16 TSRAGSAPLVDIVGGRKARPQELPFLASIQNQGRHFCGGALIHPNFVLTAASCFQSRNTG 75
Query: 325 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPL 504
A+VVLGAYDLR++E+SRQTF IRS+S+NGYDP +A LT SVALVPL
Sbjct: 76 IATVVLGAYDLRRRERSRQTFFIRSVSENGYDPQQNLNDVLLLQLDRQANLTSSVALVPL 135
Query: 505 PPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVT-SNPCLPRDMCIGVISRRGRI 681
P QNATVEAGT CQVAGWGT+R R SR PRVLNVTVT +N C P ++C GV++RRG I
Sbjct: 136 PEQNATVEAGTGCQVAGWGTRRRRGRLSRVPRVLNVTVTPANQCRPNNVCTGVLTRRGGI 195
Query: 682 SQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLNNP 831
QGD GTPLVCNGLA GVA VALFRNWIDSV+N P
Sbjct: 196 CQGDGGTPLVCNGLAHGVASWSRGPCGRGTDFFARVALFRNWIDSVINQP 245
>ref|NP_001099123.1| neutrophil elastase [Bos taurus].
Length = 267
Score = 154 bits (389), Expect = 1e-37
Identities = 87/224 (38%), Positives = 118/224 (52%), Gaps = 2/224 (0%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
G A ++IVGGR A+P +PF+AS+Q++G FC L+ FVL+AA C G N S V
Sbjct: 23 GPALASEIVGGRAARPHAWPFIASLQRRGGHFCGATLIARNFVLSAAHCLNGLNFRSVRV 82
Query: 337 VLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQN 516
VLGA++LR+QE++RQ F +R + +NG+DP A L +V + LP Q+
Sbjct: 83 VLGAHNLRRQERTRQMFRVRRVFENGFDPLSLQNDVVVLQLNRMATLNANVQVARLPAQD 142
Query: 517 ATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGDR 696
V G C GWG R + + LNVTV + C P ++C V RR I GD
Sbjct: 143 QGVGEGVRCVAMGWGRLGTNRPPPQILQQLNVTVVTGLCRPTNVCTLVPRRRAGICFGDS 202
Query: 697 GTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVL 822
G PLVCNGL G+ VA F NWI+S++
Sbjct: 203 GGPLVCNGLVHGIDSFIRGGCGSGVFPDSFASVAKFANWINSII 246
>ref|XP_002689189.1| PREDICTED: proteinase 3 (predicted)-like [Bos taurus].
Length = 256
Score = 136 bits (342), Expect = 3e-32
Identities = 83/227 (36%), Positives = 110/227 (48%), Gaps = 3/227 (1%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQ-KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
G A +IVGGR AQP P++AS+Q G FC G LVHP FVLTAA C N
Sbjct: 23 GAARAVEIVGGREAQPHSRPYVASLQLASGSHFCGGTLVHPSFVLTAAHCLNNLNPQRVR 82
Query: 334 VVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQ 513
VVLGA+ L+ E ++Q I + +N Y+P A L VA+ LP Q
Sbjct: 83 VVLGAHRLQTPEPTQQRLGISRLFENNYNPQEKLNDVLLLQLDQPATLNTHVAVAQLPQQ 142
Query: 514 NATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGD 693
+ GT C GWG + + LNVTV + C P+++C V R I GD
Sbjct: 143 AQPLPHGTQCLAMGWGRLGTLEPLPQVLQELNVTVVTFLCRPQNVCTYVPRRSAGICFGD 202
Query: 694 RGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNN 828
G PL+CNG+ GV V+L+ +WI+SVL++
Sbjct: 203 SGGPLICNGVLHGVDSFVIRGCATGQYPDFFARVSLYVDWINSVLSS 249
>ref|XP_593377.3| PREDICTED: granzyme M-like [Bos taurus].
Length = 303
Score = 104 bits (259), Expect = 1e-22
Identities = 83/258 (32%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Frame = +1
Query: 172 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 351
A I+GG P P++AS++ QG+ C G L+ R+V++AA CF G++ G+ VVLGA+
Sbjct: 31 AQIIGGHEVTPHSRPYMASVKFQGQHHCGGFLLRARWVVSAAHCFSGRDPGTGLVVLGAH 90
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA-TV 525
LR +E ++Q FSI + I+ Y P A L P+V L+ LP + A
Sbjct: 91 ALRTKEATQQVFSISAVITHPDYQPTTHTSDICLLQLNSSATLGPAVGLLGLPRRGARPP 150
Query: 526 EAGTNCQVAGWGT-----QRLRRLFSRFPRVLNVTVTSN----PCLPRDMCIGVISRRGR 678
AGT C+VAGWG+ + L RVL + ++ P +C RR R
Sbjct: 151 RAGTRCKVAGWGSVSDFEELPPGLMEAEVRVLELDACNSSWKGQLSPAMLCTHSGDRRRR 210
Query: 679 -ISQGDRGTPLVCNGLAQGVA--XXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA*RIP 849
D G PLVC A G+ V+ F WI V+ + R P
Sbjct: 211 GFCSADSGGPLVCRNRAYGLVSFSGLWCGDPKTPDVYTQVSAFVTWIRDVIRHGQ--RGP 268
Query: 850 SPSPWEGGPVSPLEPCPH 903
P GG + EP H
Sbjct: 269 QPRT-TGGRQALSEPQQH 285
>ref|XP_002689208.1| PREDICTED: granzyme M-like [Bos taurus].
Length = 283
Score = 103 bits (257), Expect = 2e-22
Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Frame = +1
Query: 172 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 351
A I+GG P P++AS++ QG+ C G L+ R+V++AA CF G++ G+ VVLGA+
Sbjct: 31 AQIIGGHEVTPHSRPYMASVKFQGQHHCGGFLLRARWVVSAAHCFSGRDPGTGLVVLGAH 90
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA-TV 525
LR +E ++Q FSI + I+ Y P A L P+V L+ LP + A
Sbjct: 91 ALRTKEATQQVFSISAVITHPDYQPTTHTSDICLLQLNSSATLGPAVGLLGLPRRGARPP 150
Query: 526 EAGTNCQVAGWGT-----QRLRRLFSRFPRVLNVTVTSN----PCLPRDMCIGVISRRGR 678
AGT C+VAGWG+ + L RVL + ++ P +C RR R
Sbjct: 151 RAGTRCKVAGWGSVSDFEELPPGLMEAEVRVLELDACNSSWKGQLSPAMLCTHSGDRRRR 210
Query: 679 -ISQGDRGTPLVCNGLAQGV 735
D G PLVC A G+
Sbjct: 211 GFCSADSGGPLVCRNRAYGL 230
>ref|NP_001192888.1| granzyme K [Bos taurus].
Length = 264
Score = 100 bits (248), Expect = 3e-21
Identities = 74/198 (37%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 351
+I+GGR P PF+AS+Q G C G L+HP++VLTAA C R S S+ VVLGA+
Sbjct: 26 EIIGGREVSPHSRPFMASLQYGGDHICGGVLIHPQWVLTAAHCHLRFAKSQSSKVVLGAH 85
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVE 528
L + E S+QTF I+ I G+ A L V L+ P ++
Sbjct: 86 SLSKNEASKQTFEIKKFIRFPGFALAPKSNDIMLVKLHTAAILNRHVQLLH-PRAKNDIK 144
Query: 529 AGTNCQVAGWGTQRLRRL-FSRFPRVLNVTVTS-NPCLPRD------------MCIGVIS 666
AGT CQV GWG L S R + VTV S C RD +C G
Sbjct: 145 AGTKCQVVGWGATDPEGLSLSDTLREVTVTVISRKTCNSRDYYNHSPVITRTMLCAGDAR 204
Query: 667 RRGRISQGDRGTPLVCNG 720
+ QGD G PLVC G
Sbjct: 205 GQKDSCQGDSGGPLVCKG 222
>ref|XP_002696377.1| PREDICTED: granzyme K (granzyme 3; tryptase II)-like [Bos taurus].
Length = 264
Score = 100 bits (248), Expect = 3e-21
Identities = 74/198 (37%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 351
+I+GGR P PF+AS+Q G C G L+HP++VLTAA C R S S+ VVLGA+
Sbjct: 26 EIIGGREVSPHSRPFMASLQYGGDHICGGVLIHPQWVLTAAHCHLRFAKSQSSKVVLGAH 85
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVE 528
L + E S+QTF I+ I G+ A L V L+ P ++
Sbjct: 86 SLSKNEASKQTFEIKKFIRFPGFALAPKSNDIMLVKLHTAAILNRHVQLLH-PRAKNDIK 144
Query: 529 AGTNCQVAGWGTQRLRRL-FSRFPRVLNVTVTS-NPCLPRD------------MCIGVIS 666
AGT CQV GWG L S R + VTV S C RD +C G
Sbjct: 145 AGTKCQVVGWGATDPEGLSLSDTLREVTVTVISRKTCNSRDYYNHSPVITRTMLCAGDAR 204
Query: 667 RRGRISQGDRGTPLVCNG 720
+ QGD G PLVC G
Sbjct: 205 GQKDSCQGDSGGPLVCKG 222
>ref|XP_002696692.1| PREDICTED: granzyme B (granzyme 2, cytotoxic
T-lymphocyte-associated serine esterase 1)-like [Bos
taurus].
Length = 246
Score = 98.2 bits (243), Expect = 1e-20
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQKQGRPF---CAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GG A+P P++A +Q + C G LV FVLTAA C N S
Sbjct: 16 AKAGEIIGGHEAKPHSRPYMAYLQYWNQDVQSRCGGFLVRQDFVLTAAHC----NGSSIK 71
Query: 334 VVLGAYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V LGA++++QQE+++Q +R +IS Y+P +A+ T +V + LP
Sbjct: 72 VTLGAHNIKQQERTQQVIRVRRAISHPDYNPKNFSNDIMLLKLERKAKQTSAVKPLSLPR 131
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPC---------LPRDMCIGVI 663
A V+ G C VAGWG V + C +C+G
Sbjct: 132 AKARVKPGQTCSVAGWGRDSTDTYADTLQEVKLIVQEDQKCEAYLRNFYNRAIQLCVGDP 191
Query: 664 SRRGRISQGDRGTPLVCNGLAQGV 735
+ QGD G PLVC+ +AQG+
Sbjct: 192 KTKKASFQGDSGGPLVCDNVAQGI 215
>ref|XP_585453.2| PREDICTED: granzyme B (granzyme 2, cytotoxic
T-lymphocyte-associated serine esterase 1)-like [Bos
taurus].
Length = 246
Score = 98.2 bits (243), Expect = 1e-20
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQKQGRPF---CAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GG A+P P++A +Q + C G LV FVLTAA C N S
Sbjct: 16 AKAGEIIGGHEAKPHSRPYMAYLQYWNQDVQSRCGGFLVRQDFVLTAAHC----NGSSIK 71
Query: 334 VVLGAYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V LGA++++QQE+++Q +R +IS Y+P +A+ T +V + LP
Sbjct: 72 VTLGAHNIKQQERTQQVIRVRRAISHPDYNPKNFSNDIMLLKLERKAKQTSAVKPLSLPR 131
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPC---------LPRDMCIGVI 663
A V+ G C VAGWG V + C +C+G
Sbjct: 132 AKARVKPGQTCSVAGWGRDSTDTYADTLQEVKLIVQEDQKCEAYLRNFYNRAIQLCVGDP 191
Query: 664 SRRGRISQGDRGTPLVCNGLAQGV 735
+ QGD G PLVC+ +AQG+
Sbjct: 192 KTKKASFQGDSGGPLVCDNVAQGI 215
>ref|NP_001098979.1| hypothetical protein LOC100125946 [Bos taurus].
Length = 255
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 13/199 (6%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQ--KQGRPF-CAGALVHPRFVLTAASCFRGKNSGSASVVLGA 348
I+GG A+P P++A +Q G P C G LV FVLTAA C S S +V LGA
Sbjct: 20 IIGGHEAKPHSRPYMAFLQINTSGEPDNCGGFLVREDFVLTAAHCLGSSLSTSINVTLGA 79
Query: 349 YDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATV 525
++++++E ++Q + R I Y+ +A +T V+ + LP + A V
Sbjct: 80 HNIKERESTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKANITDKVSPINLPRRLAKV 139
Query: 526 EAGTNCQVAGWG--------TQRLRRLFSRFPRVLNVTVT-SNPCLPRDMCIGVISRRGR 678
+ G C VAGWG T +L+ + + R N + +C G S R
Sbjct: 140 KPGMMCSVAGWGQLGVNMPSTDKLQEVDLKVQRKKKCRARFKNYISSKQICAGDPSERKN 199
Query: 679 ISQGDRGTPLVCNGLAQGV 735
GD G PLVCNG+AQG+
Sbjct: 200 SFLGDSGGPLVCNGVAQGI 218
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,091,506
Number of extensions: 1317499
Number of successful extensions: 7922
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 7627
Number of HSP's successfully gapped: 120
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003378.1| neutrophil elastase [Canis lupus familiaris]. 161 1e-39
Alignment gi|XP_850688.1| PREDICTED: similar to Cathepsin G precursor (CG... 107 2e-23
Alignment gi|XP_547751.2| PREDICTED: similar to Granzyme H precursor (Cyt... 101 1e-21
Alignment gi|XP_547752.2| PREDICTED: similar to Granzyme B precursor (T-c... 100 4e-21
Alignment gi|XP_544335.2| PREDICTED: similar to Granzyme A precursor (Cyt... 94 3e-19
Alignment gi|XP_546318.2| PREDICTED: similar to Granzyme K precursor (Gra... 91 1e-18
Alignment gi|XP_542217.2| PREDICTED: similar to protease, serine-like 1 [... 90 1e-18
Alignment gi|XP_542213.2| PREDICTED: similar to Complement factor D precu... 87 3e-17
Alignment gi|XP_541465.2| PREDICTED: similar to kallikrein 13 precursor [... 80 4e-15
Alignment gi|NP_001013442.1| chymase precursor [Canis lupus familiaris]. 79 7e-15
>ref|NP_001003378.1| neutrophil elastase [Canis lupus familiaris].
Length = 282
Score = 161 bits (407), Expect = 1e-39
Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 2/265 (0%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
G A ++IVGGR AQP +PF+ S+Q++G FC G L+ P FV++AA C G N S V
Sbjct: 24 GPALASEIVGGRPAQPHAWPFMVSLQRRGGHFCGGTLIAPNFVMSAAHCVDGLNFRSVVV 83
Query: 337 VLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQN 516
VLGA+DL ++E +RQ F+++ + +NG+DP A + +V + LP QN
Sbjct: 84 VLGAHDLGERESTRQLFAVQRVFENGFDPVRLVNDIVLLQLNGSATINANVQVARLPAQN 143
Query: 517 ATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGDR 696
V G C GWG + R + LNVTV + C ++C V RR I GD
Sbjct: 144 QGVGNGVQCLAMGWGQLGTAQPPPRILQELNVTVVTTLCRRSNVCTLVPRRRAGICFGDS 203
Query: 697 GTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA*RIPSPSPWEG 870
G PLVCNGL QG+ VA F +WI+S++ PPA +P P +
Sbjct: 204 GGPLVCNGLIQGIDSFIRGSCASGFFPDAFAPVAQFVDWINSIIRRPPA--LPPARPGQQ 261
Query: 871 GPVSPLEPCPHCHTSRAACPIPKPH 945
P A P P PH
Sbjct: 262 DP----------ERGAARAPPPAPH 276
>ref|XP_850688.1| PREDICTED: similar to Cathepsin G precursor (CG) [Canis
familiaris].
Length = 312
Score = 107 bits (266), Expect = 2e-23
Identities = 82/260 (31%), Positives = 113/260 (43%), Gaps = 22/260 (8%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQKQ----GRPFCAGALVHPRFVLTAASCFRGKNSGSA 330
A DI+GGR A+P P++A +Q + G C G LV FVLTAA C+ +
Sbjct: 16 AGAGDIIGGREARPHSRPYMAYLQIRSPNGGSSACGGFLVREDFVLTAAHCWGSR----I 71
Query: 331 SVVLGAYDLRQQEQSRQ-TFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLP 507
+V LGA+D+ ++E+ +Q T + R+I Y+P R T V VPLP
Sbjct: 72 AVTLGAHDVGRRERVQQRTTARRAIRHPRYNPQTTANDIMLLQLADRMRRTRQVRPVPLP 131
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR--------DMCIGVI 663
A V G C VAGWG L R ++ V ++ C R +C+G
Sbjct: 132 RAQAGVRPGATCTVAGWGRLGLNRRTNKLHEVQLTVQNNSRCSRRFNFFNGQTQICVGNP 191
Query: 664 SRRGRISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLN------ 825
GD G PLVCNG+AQG+ ++ F W+ +L
Sbjct: 192 RAGKSAFLGDSGGPLVCNGVAQGIV-SYGDRRGTPPAVFTRISAFMPWLLPLLQANHSPI 250
Query: 826 ---NPPA*RIPSPSPWEGGP 876
+PP SPSPW GP
Sbjct: 251 SLAHPPP---SSPSPWRRGP 267
>ref|XP_547751.2| PREDICTED: similar to Granzyme H precursor (Cytotoxic T-lymphocyte
proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X)
(Cytotoxic serine protease-C) (CSP-C) [Canis
familiaris].
Length = 250
Score = 101 bits (252), Expect = 1e-21
Identities = 67/203 (33%), Positives = 97/203 (47%), Gaps = 17/203 (8%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQ-------KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
I+GG A+P P++A +Q K + C G LVH FVLTAA C+ S V
Sbjct: 21 IIGGHEAKPHSRPYMAFVQFLDKDNKKDSKKRCGGVLVHKDFVLTAAHCW----GSSIKV 76
Query: 337 VLGAYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQ 513
LGA+++++QE+++Q +R +I Y P +A+LT +V +PLP
Sbjct: 77 TLGAHNIKEQEKTQQVIPVRRAIPHPDYSPKNYSNDIMLLLLERKAKLTAAVKTLPLPRG 136
Query: 514 NATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPC--LPRD-------MCIGVIS 666
A V G C VAGWG + L + V T C + RD +C+G
Sbjct: 137 KARVRPGQVCSVAGWGRISMDTLATTLQEVSLEVQTDWECRSIFRDYYIGATHICVGDPK 196
Query: 667 RRGRISQGDRGTPLVCNGLAQGV 735
+ +GD G PLVCN + QG+
Sbjct: 197 KMKTGFKGDSGGPLVCNNVVQGI 219
>ref|XP_547752.2| PREDICTED: similar to Granzyme B precursor (T-cell serine protease
1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte
protease) (SECT) (Granzyme-2) (Cathepsin G-like 1)
(CTSGL1) (CTLA-1) (Human lymphocyte protein) (HLP) (C11)
[Canis familiaris].
Length = 388
Score = 99.8 bits (247), Expect = 4e-21
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQG---RPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 345
+I+GG A+P P++A +Q + + C G L+ FVLTAA C+ S V LG
Sbjct: 151 EIIGGHEAKPHSRPYMALLQIENPSRQIKCGGFLIQAMFVLTAAHCW----GSSIKVTLG 206
Query: 346 AYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNAT 522
A+++++QE+++Q +R +I Y P +A+LT +V +PLP A
Sbjct: 207 AHNIKEQEKTQQVIPVRRAIPHPDYSPKNYSNDIMLLLLERKAKLTAAVKTLPLPRGKAR 266
Query: 523 VEAGTNCQVAGWG--TQRLRRLFSRFPRVLNVTVTSNPC---LPR------DMCIGVISR 669
V G C VAGWG ++RR V + C LP+ +C+G
Sbjct: 267 VRPGQVCSVAGWGQIEAKIRRYPDTLQEVSLEVQKDSECEFLLPKYYDSTTQLCVGNPKE 326
Query: 670 RGRISQGDRGTPLVCNGLAQGV 735
QGD G PLVCN +AQG+
Sbjct: 327 TKSSFQGDSGGPLVCNNVAQGI 348
>ref|XP_544335.2| PREDICTED: similar to Granzyme A precursor (Cytotoxic T-lymphocyte
proteinase 1) (Hanukkah factor) (H factor) (HF)
(Granzyme-1) (CTL tryptase) [Canis familiaris].
Length = 260
Score = 93.6 bits (231), Expect = 3e-19
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYD 354
+I+GG + P P++ ++ G+ CAGAL+ +VLTAA C KNS V+LGA+
Sbjct: 28 EIIGGNQVSPHSRPYMVLLK--GKKICAGALIAEDWVLTAAHCVLDKNS---QVILGAHS 82
Query: 355 LRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEA 531
+ ++E +Q ++ +DP +A++ V+++ LP + V+
Sbjct: 83 ITKKESEKQIMFVKKEFPYPCFDPDTHEGDLKLLQLKKKAKVNKKVSILRLPKRGDDVKP 142
Query: 532 GTNCQVAGWGTQRLRRLFSRFPRVLNVTVTS------------NPCLPRDM-CIGVISRR 672
GT C+VAGWG S R +N+TV + NP + +M C G ++
Sbjct: 143 GTMCRVAGWGRIHNNSPQSDTLREVNITVINRRICNDEKHYNYNPVIGLNMICAGSLNGG 202
Query: 673 GRISQGDRGTPLVCNGLAQGV 735
GD G+PL+C G+ +GV
Sbjct: 203 KDSCNGDSGSPLICEGIFRGV 223
>ref|XP_546318.2| PREDICTED: similar to Granzyme K precursor (Granzyme-3)
(NK-tryptase-2) (NK-TRYP-2) [Canis familiaris].
Length = 268
Score = 91.3 bits (225), Expect = 1e-18
Identities = 69/200 (34%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCF-RGKNSGSASVVLGAY 351
+I+GGR PF+ASIQ +G+ C G L+HP++VL+AA C R + V+LGA+
Sbjct: 26 EIIGGREVPAHSRPFMASIQYRGQHLCGGVLIHPQWVLSAAHCRPRHEKVQLFKVILGAH 85
Query: 352 DLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVE 528
L + E S+QTF + + I + + A L V L+ P +
Sbjct: 86 SLSKNEASKQTFEVEKFIPFSRFISHHKSNDIMLIKLHTAATLDKYVQLLH-PSSKNDIR 144
Query: 529 AGTNCQVAGWGT---QRLRRLFSRFPRVLNVTVTS------------NPCLPRDM-CIGV 660
AGT CQV GWG Q LR S R + VT+ + NP + DM C G
Sbjct: 145 AGTKCQVTGWGATDPQYLR--ISDTLREVTVTIINRKLCNSPSYYNHNPIITADMVCAGD 202
Query: 661 ISRRGRISQGDRGTPLVCNG 720
+ QGD G PLVC G
Sbjct: 203 TRGQKDSCQGDSGGPLVCKG 222
>ref|XP_542217.2| PREDICTED: similar to protease, serine-like 1 [Canis familiaris].
Length = 536
Score = 90.1 bits (222), Expect(2) = 1e-18
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 14/234 (5%)
Frame = +1
Query: 172 ADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAY 351
A I+GG P P++ S++ G+ C G L+ R+V++AA CF ++ VVLGA+
Sbjct: 279 ARIIGGHEVTPHSRPYMVSVKFGGQHQCGGFLLRARWVVSAAHCFSDRDPRMGLVVLGAH 338
Query: 352 DLRQQEQSRQTFSIRSISQN-GYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA-TV 525
LR E ++Q F I ++ ++ Y P A L P+V L+PLP ++A +
Sbjct: 339 VLRTWEPTQQVFGISAVIRHPDYQPATHANDICLLQLNGSATLGPAVGLLPLPRRDARPL 398
Query: 526 EAGTNCQVAGWGT-----QRLRRLFSRFPRVLNVTVTS----NPCLPRDMCIGVISRRGR 678
+ G C+VAGWG+ L RVL + + P +C RR R
Sbjct: 399 KVGARCRVAGWGSVSDFEDLPPGLMEAEVRVLGLDACNGSWRGQLSPAMLCTRSGDRRRR 458
Query: 679 -ISQGDRGTPLVCNGLAQGVA--XXXXXXXXXXXXXXXXVALFRNWIDSVLNNP 831
D G PLVC A G+ V+ F +WI V+ P
Sbjct: 459 GFCSADSGGPLVCRNRAHGLVSFSGLWCGDPRTPDVYTQVSAFVSWIWDVVRGP 512
Score = 21.6 bits (44), Expect(2) = 1e-18
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 77 SCPRLFPSCQHSDSW 121
SCP L SC + SW
Sbjct: 263 SCPILMRSCPPAGSW 277
>ref|XP_542213.2| PREDICTED: similar to Complement factor D precursor (C3 convertase
activator) (Properdin factor D) (Adipsin) [Canis
familiaris].
Length = 287
Score = 86.7 bits (213), Expect = 3e-17
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GG A+ P++AS+Q G+ C G LV R+VL+AA C G V+LGA+ L
Sbjct: 29 ILGGSEAESHARPYMASVQVDGKHVCGGFLVSERWVLSAAHCLEDVADGKVRVLLGAHSL 88
Query: 358 RQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
Q E S++ + + R++ +A L P+V + ++ V AG
Sbjct: 89 SQPEPSKRWYDVLRAVPHPDSRRDTIEHDLLLLQLSEDAELGPAVQPLRWQREDRDVAAG 148
Query: 535 TNCQVAGWG-TQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGDRGTPLV 711
T C VAGWG R R ++ + C R I+ R+ GD G PLV
Sbjct: 149 TRCDVAGWGVVSHTGRRPDRLQHLILPVLDRATCNLRTYHDKTITE--RMMCGDSGGPLV 206
Query: 712 CNGLAQGV 735
C G+A+ V
Sbjct: 207 CGGVAEAV 214
>ref|XP_541465.2| PREDICTED: similar to kallikrein 13 precursor [Canis familiaris].
Length = 278
Score = 79.7 bits (195), Expect = 4e-15
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 16/200 (8%)
Frame = +1
Query: 184 GGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDLRQ 363
GG +P P+ A++ QGR FC G LVHP++VLTAA C + V LG + L +
Sbjct: 39 GGYTCRPHSQPWQAALLVQGRLFCGGVLVHPKWVLTAAHCLK----DGYRVYLGKHALGR 94
Query: 364 QEQSRQTFS-IRSISQNGY--DPXXXXXXXXXXXXXXEARLTPSVALVPLP-PQNATVEA 531
E Q +RSI Y P ++ + P+ + LP N + A
Sbjct: 95 VEAGEQVREVVRSIPHPQYQISPTHLNHDHDIMLLELQSPVQPTNHIRVLPLSHNNCLPA 154
Query: 532 GTNCQVAGWGTQRLRRLFSRFPRVL---NVTVTSN---------PCLPRDMCIGVISRRG 675
GT C+V+GWGT ++ +P+ L N+ + S+ P +C G
Sbjct: 155 GTCCRVSGWGTTTSPQV--SYPQTLQCANIQLRSDEECRQVYPGKITPNMLCAGTKEGGK 212
Query: 676 RISQGDRGTPLVCNGLAQGV 735
+GD G PL+CNG G+
Sbjct: 213 DSCEGDSGGPLICNGTLHGI 232
>ref|NP_001013442.1| chymase precursor [Canis lupus familiaris].
Length = 249
Score = 79.0 bits (193), Expect = 7e-15
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 13/238 (5%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQ----KQGRPFCAGALVHPRFVLTAASCFRGKNSGSA 330
A +I+GG ++P P++A ++ + C G L+ FVLTAA C
Sbjct: 17 AEAEEIIGGTESKPHSRPYMAHLEILTLRNHLASCGGFLIRRNFVLTAAHCA----GRFI 72
Query: 331 SVVLGAYDLRQQEQSRQTFS-IRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLP 507
V LGA++++++E + Q I+ YD +A LT +V +PL
Sbjct: 73 MVTLGAHNIQKKEDTWQKLEVIKQFPHPKYDDLTLRHDIMLLKLKEKANLTLAVGTLPLS 132
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR--------DMCIGVI 663
PQ V G C+VAGWG +++ S + + + + +C+G
Sbjct: 133 PQFNFVPPGRMCRVAGWGKRQVNGSGSDTLQEVKLRLMDPQACRHYMAFDHNLQLCVGNP 192
Query: 664 SRRGRISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA 837
+ +GD G PL+C G+AQG+ ++ +R WI+ VL A
Sbjct: 193 RKTKSAFKGDSGGPLLCAGVAQGIV-SYGQNDAKPPAVFTRISHYRPWINKVLKQNKA 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,906,914
Number of extensions: 1358227
Number of successful extensions: 7728
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 7541
Number of HSP's successfully gapped: 69
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001691.1| azurocidin preproprotein [Homo sapiens]. 267 1e-71
Alignment gi|NP_001963.1| neutrophil elastase preproprotein [Homo sapiens]. 150 1e-36
Alignment gi|NP_002768.3| myeloblastin [Homo sapiens]. 146 3e-35
Alignment gi|NP_001919.2| complement factor D preproprotein [Homo sapiens]. 96 7e-20
Alignment gi|NP_219491.1| granzyme H precursor [Homo sapiens]. 95 9e-20
Alignment gi|NP_006135.1| granzyme A precursor [Homo sapiens]. 94 1e-19
Alignment gi|NP_004122.2| granzyme B precursor [Homo sapiens]. 90 4e-18
Alignment gi|NP_001902.1| cathepsin G preproprotein [Homo sapiens]. 89 5e-18
Alignment gi|NP_002095.1| granzyme K precursor [Homo sapiens]. 89 8e-18
Alignment gi|NP_005308.1| granzyme M precursor [Homo sapiens]. 88 1e-17
>ref|NP_001691.1| azurocidin preproprotein [Homo sapiens].
Length = 251
Score = 267 bits (682), Expect = 1e-71
Identities = 138/231 (59%), Positives = 164/231 (70%), Gaps = 2/231 (0%)
Frame = +1
Query: 145 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 324
+SR G + L DIVGGR+A+P++FPFLASIQ QGR FC GAL+H RFV+TAASCF+ +N G
Sbjct: 16 SSRAGSSPLLDIVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPG 75
Query: 325 SASVVLGAYDLRQQE-QSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVP 501
++VVLGAYDLR++E QSRQTFSI S+S+NGYDP EA LT SV ++P
Sbjct: 76 VSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILP 135
Query: 502 LPPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVT-SNPCLPRDMCIGVISRRGR 678
LP QNATVEAGT CQVAGWG+QR SRFPR +NVTVT + C P ++C GV++RRG
Sbjct: 136 LPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGG 195
Query: 679 ISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLNNP 831
I GD GTPLVC GLA GVA VALFR+WID VLNNP
Sbjct: 196 ICNGDGGTPLVCEGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNP 246
>ref|NP_001963.1| neutrophil elastase preproprotein [Homo sapiens].
Length = 267
Score = 150 bits (380), Expect = 1e-36
Identities = 86/244 (35%), Positives = 123/244 (50%), Gaps = 2/244 (0%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
G A ++IVGGRRA+P +PF+ S+Q +G FC L+ P FV++AA C N + V
Sbjct: 23 GTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRV 82
Query: 337 VLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQN 516
VLGA++L ++E +RQ F+++ I +NGYDP A + +V + LP Q
Sbjct: 83 VLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQG 142
Query: 517 ATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGDR 696
+ G C GWG R + + LNVTV ++ C ++C V R+ + GD
Sbjct: 143 RRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDS 202
Query: 697 GTPLVCNGLAQGVA--XXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA*RIPSPSPWEG 870
G+PLVCNGL G+A VA F NWIDS++ P P P +
Sbjct: 203 GSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQRSE--DNPCPHPRDP 260
Query: 871 GPVS 882
P S
Sbjct: 261 DPAS 264
>ref|NP_002768.3| myeloblastin [Homo sapiens].
Length = 256
Score = 146 bits (369), Expect = 3e-35
Identities = 88/232 (37%), Positives = 117/232 (50%), Gaps = 5/232 (2%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRP---FCAGALVHPRFVLTAASCFRGKNSGS 327
G A A+IVGG AQP P++AS+Q +G P FC G L+HP FVLTAA C R
Sbjct: 21 GAARAAEIVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRL 80
Query: 328 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLP 507
+VVLGA+++R QE ++Q FS+ + N YD A L+ SVA V LP
Sbjct: 81 VNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDVLLIQLSSPANLSASVATVQLP 140
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQ 687
Q+ V GT C GWG ++ + LNVTV + C P ++C V R+ I
Sbjct: 141 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 200
Query: 688 GDRGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA 837
GD G PL+C+G+ QG+ VAL+ +WI S L A
Sbjct: 201 GDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRVEA 252
>ref|NP_001919.2| complement factor D preproprotein [Homo sapiens].
Length = 253
Score = 95.5 bits (236), Expect = 7e-20
Identities = 71/227 (31%), Positives = 97/227 (42%), Gaps = 12/227 (5%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GGR A+ P++AS+Q G C G LV ++VL+AA C G V+LGA+ L
Sbjct: 26 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 85
Query: 358 RQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
Q E S++ + + R++ P +A L P+V +P + V G
Sbjct: 86 SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 145
Query: 535 TNCQVAGWG-TQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVI--------SRRGRISQ 687
T C VAGWG R VL + C R G I S R +
Sbjct: 146 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCK 205
Query: 688 GDRGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVL 822
GD G PLVC G+ +GV + VA + WIDSVL
Sbjct: 206 GDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 252
>ref|NP_219491.1| granzyme H precursor [Homo sapiens].
Length = 246
Score = 95.1 bits (235), Expect = 9e-20
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLG 345
+I+GG A+P P++A +Q ++ R C G LV FVLTAA C S +V LG
Sbjct: 20 EIIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLG 75
Query: 346 AYDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNAT 522
A+++++QE+++Q + R I Y+P +A+ T +V + LP A
Sbjct: 76 AHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQ 135
Query: 523 VEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPC---------LPRDMCIGVISRRG 675
V+ G C VAGWG + L + VL C ++C+G +
Sbjct: 136 VKPGQLCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQ 195
Query: 676 RISQGDRGTPLVCNGLAQGV 735
+GD G PLVC +AQG+
Sbjct: 196 TGFKGDSGGPLVCKDVAQGI 215
>ref|NP_006135.1| granzyme A precursor [Homo sapiens].
Length = 262
Score = 94.4 bits (233), Expect = 1e-19
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 14/200 (7%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GG P P++ + + CAGAL+ +VLTAA C K S V+LGA+ +
Sbjct: 29 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRS---QVILGAHSI 85
Query: 358 RQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
++E ++Q ++ YDP +A++ V ++ LP + V+ G
Sbjct: 86 TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 145
Query: 535 TNCQVAGWGTQRLRRLFSRFPRVLNVTVTS------------NPCLPRDMCIGVISRRGR 678
T CQVAGWG +S R +N+T+ NP + +M R GR
Sbjct: 146 TMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 205
Query: 679 IS-QGDRGTPLVCNGLAQGV 735
S GD G+PL+C G+ +GV
Sbjct: 206 DSCNGDSGSPLLCEGVFRGV 225
>ref|NP_004122.2| granzyme B precursor [Homo sapiens].
Length = 247
Score = 89.7 bits (221), Expect = 4e-18
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GG A+P P++A + ++ C G L+ FVLTAA C+ S +
Sbjct: 16 ADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSIN 71
Query: 334 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V LGA+++++QE ++Q + R I Y+P +A+ T +V + LP
Sbjct: 72 VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPS 131
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRD----------MCIGV 660
A V+ G C VAGWG S + + +TV + D +C+G
Sbjct: 132 NKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGD 191
Query: 661 ISRRGRISQGDRGTPLVCNGLAQGV 735
+ +GD G PLVCN +AQG+
Sbjct: 192 PEIKKTSFKGDSGGPLVCNKVAQGI 216
>ref|NP_001902.1| cathepsin G preproprotein [Homo sapiens].
Length = 255
Score = 89.4 bits (220), Expect = 5e-18
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GGR ++P P++A +Q Q G+ C G LV FVLTAA C+ + +
Sbjct: 16 AEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNIN 71
Query: 334 VVLGAYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V LGA++++++E ++Q + R +I Y+ R +V V LP
Sbjct: 72 VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPR 131
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLP--------RDMCIGVIS 666
+ GT C VAGWG +RR V CL R +C+G
Sbjct: 132 AQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRR 191
Query: 667 RRGRISQGDRGTPLVCNGLAQGV 735
R +GD G PL+CN +A G+
Sbjct: 192 ERKAAFKGDSGGPLLCNNVAHGI 214
>ref|NP_002095.1| granzyme K precursor [Homo sapiens].
Length = 264
Score = 88.6 bits (218), Expect = 8e-18
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 351
+I+GG+ P PF+ASIQ G C G L+ P++VLTAA C +R S +VVLGA+
Sbjct: 26 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 85
Query: 352 DLRQQEQSRQTFSIRS---ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNAT 522
L + E S+QT I+ S+ DP A+L V ++ + +
Sbjct: 86 SLSKNEASKQTLEIKKFIPFSRVTSDP--QSNDIMLVKLQTAAKLNKHVKMLHI-RSKTS 142
Query: 523 VEAGTNCQVAGWGTQRLRRLF-SRFPRVLNVTVTS------------NPCLPRDM-CIGV 660
+ +GT C+V GWG L S R + VTV S +P + +DM C G
Sbjct: 143 LRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGD 202
Query: 661 ISRRGRISQGDRGTPLVCNGLAQGV 735
+ +GD G PL+C G+ +
Sbjct: 203 AKGQKDSCKGDSGGPLICKGVFHAI 227
>ref|NP_005308.1| granzyme M precursor [Homo sapiens].
Length = 257
Score = 87.8 bits (216), Expect = 1e-17
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Frame = +1
Query: 154 VGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
VG + I+GGR P P++AS+Q+ G C G LVHP++VLTAA C +
Sbjct: 18 VGSSFGTQIIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL-AQRMAQLR 76
Query: 334 VVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVP--LP 507
+VLG + L + TF I++ Q+ + ++ PS + P LP
Sbjct: 77 LVLGLHTL---DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALP 133
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVT-----------SNPCLPRDMCI 654
+ V AGT C +AGWG SR R L++ V + P +C+
Sbjct: 134 SKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCL 193
Query: 655 GVISRRGRISQGDRGTPLVC 714
S+ +GD G PLVC
Sbjct: 194 AADSKDQAPCKGDSGGPLVC 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,890,112
Number of extensions: 1313767
Number of successful extensions: 7488
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 7236
Number of HSP's successfully gapped: 96
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056594.2| neutrophil elastase precursor [Mus musculus]. 149 3e-36
Alignment gi|NP_035308.2| myeloblastin precursor [Mus musculus]. 134 1e-31
Alignment gi|NP_032222.1| granzyme K precursor [Mus musculus]. 100 2e-21
Alignment gi|NP_001036175.1| serine protease 57 precursor [Mus musculus]. 95 7e-20
Alignment gi|NP_031826.1| cathepsin G preproprotein [Mus musculus]. 92 5e-19
Alignment gi|NP_001019885.1| mast cell protease 10 [Mus musculus]. 90 3e-18
Alignment gi|NP_034502.2| granzyme D [Mus musculus]. 88 1e-17
Alignment gi|NP_032596.1| mast cell protease 1 precursor [Mus musculus]. 87 2e-17
Alignment gi|NP_034912.3| mast cell protease 9 precursor [Mus musculus]. 87 3e-17
Alignment gi|NP_038487.1| complement factor D precursor [Mus musculus]. 87 3e-17
>ref|NP_056594.2| neutrophil elastase precursor [Mus musculus].
Length = 265
Score = 149 bits (376), Expect = 3e-36
Identities = 90/241 (37%), Positives = 124/241 (51%), Gaps = 3/241 (1%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
G A ++IVGGR A+P +PF+AS+Q++G FC L+ FV++AA C G N S V
Sbjct: 22 GPALASEIVGGRPARPHAWPFMASLQRRGGHFCGATLIARNFVMSAAHCVNGLNFRSVQV 81
Query: 337 VLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQN 516
VLGA+DLR+QE++RQTFS++ I +NG+DP A + +V + LP Q
Sbjct: 82 VLGAHDLRRQERTRQTFSVQRIFENGFDPSQLLNDIVIIQLNGSATINANVQVAQLPAQG 141
Query: 517 ATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR-DMCIGVISRRGRISQGD 693
V T C GWG R + LNVTV +N C R ++C V R+ I GD
Sbjct: 142 QGVGDRTPCLAMGWGRLGTNRPSPSVLQELNVTVVTNMCRRRVNVCTLVPRRQAGICFGD 201
Query: 694 RGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA*RIPSPSPWE 867
G PLVCN L QG+ VA F +WI+S++ + + P E
Sbjct: 202 SGGPLVCNNLVQGIDSFIRGGCGSGLYPDAFAPVAEFADWINSIIRSHNDHLLTHPKDRE 261
Query: 868 G 870
G
Sbjct: 262 G 262
>ref|NP_035308.2| myeloblastin precursor [Mus musculus].
Length = 254
Score = 134 bits (337), Expect = 1e-31
Identities = 81/227 (35%), Positives = 110/227 (48%), Gaps = 5/227 (2%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGS 327
G + IVGG A+P P++AS+Q G FC G L+HPRFVLTAA C + +
Sbjct: 23 GAVQASKIVGGHEARPHSRPYVASLQLSRFPGSHFCGGTLIHPRFVLTAAHCLQDISWQL 82
Query: 328 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLP 507
+VVLGA+DL E +Q F+I + QN Y+P A L VA+ LP
Sbjct: 83 VTVVLGAHDLLSSEPEQQKFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVASLP 142
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQ 687
Q+ T+ GT C GWG + R + LNVTV + C ++C V R I
Sbjct: 143 QQDQTLSQGTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGICF 202
Query: 688 GDRGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVL 822
GD G PL+CNG+ GV V+++ +WI +VL
Sbjct: 203 GDSGGPLICNGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVL 249
>ref|NP_032222.1| granzyme K precursor [Mus musculus].
Length = 263
Score = 100 bits (248), Expect = 2e-21
Identities = 70/199 (35%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG-SASVVLGAY 351
+I+GGR QP PF+ASIQ + + C G L+HP++VLTAA C+ G S +VVLGA+
Sbjct: 25 EIIGGREVQPHSRPFMASIQYRSKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAH 84
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVE 528
L + E +QTF I+ I + A L +V L+ L +N +
Sbjct: 85 SLSKNEPMKQTFEIKKFIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKN-YLR 143
Query: 529 AGTNCQVAGWGTQRLRRL-FSRFPRVLNVTVTS------------NPCLPRDM-CIGVIS 666
GT CQV GWGT + L S R + VT+ S P + +DM C G
Sbjct: 144 DGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAGDAR 203
Query: 667 RRGRISQGDRGTPLVCNGL 723
+ +GD G PL+C G+
Sbjct: 204 GQKDSCKGDSGGPLICKGI 222
>ref|NP_001036175.1| serine protease 57 precursor [Mus musculus].
Length = 284
Score = 95.1 bits (235), Expect = 7e-20
Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 12/198 (6%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
IVGG P P++AS+ +G +C G L+H +V++AA CF ++ VVLGA+ L
Sbjct: 40 IVGGHEVTPHSRPYMASVSFEGHHYCGGFLIHTHWVVSAAHCFSDRDPSMGLVVLGAHAL 99
Query: 358 RQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA-TVEA 531
E ++QTFSI ++S + P A L P+V L+ LP +NA A
Sbjct: 100 LAPEPTQQTFSIAAAVSHPDFQPATQANDICLLRLNGSAVLGPAVRLLRLPRRNAKPPAA 159
Query: 532 GTNCQVAGWG-----TQRLRRLFSRFPRVLNVTVTSN----PCLPRDMCIGVISRRGR-I 681
GT C V+GWG + L R+L+++V ++ P +C RR R
Sbjct: 160 GTRCHVSGWGFVSDFEEPPPGLMEVEVRILDLSVCNSSWQGQLNPAMLCTHSGDRRRRGF 219
Query: 682 SQGDRGTPLVCNGLAQGV 735
D G PLVC A G+
Sbjct: 220 CSADSGGPLVCGRRAHGL 237
>ref|NP_031826.1| cathepsin G preproprotein [Mus musculus].
Length = 261
Score = 92.4 bits (228), Expect = 5e-19
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 12/198 (6%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASI---QKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGA 348
I+GGR A+P +P++A + +G C G LV FVLTAA C S +V LGA
Sbjct: 21 IIGGREARPHSYPYMAFLLIQSPEGLSACGGFLVREDFVLTAAHCL----GSSINVTLGA 76
Query: 349 YDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATV 525
++++ +E+++Q ++ R+I Y+P AR + SV V LP + +
Sbjct: 77 HNIQMRERTQQLITVLRAIRHPDYNPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKL 136
Query: 526 EAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR--------DMCIGVISRRGRI 681
+ G C VAGWG R + V C R +C+G R
Sbjct: 137 QPGDLCTVAGWGRVSQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSA 196
Query: 682 SQGDRGTPLVCNGLAQGV 735
+GD G PLVC+ +AQG+
Sbjct: 197 FRGDSGGPLVCSNVAQGI 214
>ref|NP_001019885.1| mast cell protease 10 [Mus musculus].
Length = 246
Score = 89.7 bits (221), Expect = 3e-18
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRP----FCAGALVHPRFVLTAASCFRGKNSGSASVVL 342
+I+GG ++P P++A + R C G L+ P+FV+TAA C + +V L
Sbjct: 20 EIIGGVESEPHSRPYMAYVNTFRRKGYVAICGGFLITPQFVMTAAHC----SGRRMTVTL 75
Query: 343 GAYDLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA 519
GA+++R++E ++Q + I Y+ +A LT +V +VPLP +
Sbjct: 76 GAHNVRKRECTQQKIKVEKYILPPNYNVSSKFNDIVLLKLKKQANLTSAVDVVPLPAPSD 135
Query: 520 TVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCL--------PRDMCIGVISRRG 675
+ GT C AGWG L++ SR R + + + +C+G ++
Sbjct: 136 FAKPGTMCWAAGWGRTGLKKSISRTLREVELRIMGKKACKIFKHYKDSLQICVGSSTKVA 195
Query: 676 RISQGDRGTPLVCNGLAQGV 735
+ GD G PL+C G+A G+
Sbjct: 196 SVYMGDSGGPLLCAGVAHGI 215
>ref|NP_034502.2| granzyme D [Mus musculus].
Length = 252
Score = 87.8 bits (216), Expect = 1e-17
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 15/202 (7%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQ----KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVL 342
+I+GG +P P++A + K R +C G L+ FVLTAA C S +V L
Sbjct: 20 EIIGGHVVKPHSRPYMAFVMSVDIKGNRIYCGGFLIQDDFVLTAAHCKNSSVQSSMTVTL 79
Query: 343 GAYDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA 519
GA+++ +E+++Q + + I Y+ +A+ T +V + LP NA
Sbjct: 80 GAHNITAKEETQQIIPVAKDIPHPDYNATIFYSDIMLLKLESKAKRTKAVRPLKLPRSNA 139
Query: 520 TVEAGTNCQVAGWGTQRLR--RLFSRFPRVLNVTVTSNPCLPR--------DMCIGVISR 669
V+ G C VAGWG++ + + +R V V C R ++C G + +
Sbjct: 140 RVKPGDVCSVAGWGSRSINDTKASARLREVQLVIQEDEECKKRFRYYTETTEICAGDLKK 199
Query: 670 RGRISQGDRGTPLVCNGLAQGV 735
+GD G PLVC+ A G+
Sbjct: 200 IKTPFKGDSGGPLVCDNQAYGL 221
>ref|NP_032596.1| mast cell protease 1 precursor [Mus musculus].
Length = 246
Score = 87.0 bits (214), Expect = 2e-17
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQ----KQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVL 342
+I+GG A+P P++A ++ + C G L+ P+FVLTAA C +G+ +V L
Sbjct: 20 EIIGGVEARPHSRPYMAHLKIITDRGSEDRCGGFLIAPQFVLTAAHC-KGRE---ITVTL 75
Query: 343 GAYDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA 519
GA+D+ + E ++Q + + I Y+ +A LTP+V ++PLP +
Sbjct: 76 GAHDVSKSESTQQRIKVEKQIIHKNYNVSFNLYDIMLLKLEEKAELTPTVDVIPLPGPSD 135
Query: 520 TVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR--------DMCIGVISRRG 675
++ G C AGWG + S R + + + +C+G ++
Sbjct: 136 FIDPGKMCWTAGWGKTGEKEPTSETLREVELRIMDKEACKMYKHYDYNFQVCVGSSTKLK 195
Query: 676 RISQGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLN 825
GD G PL+C G+A G+ ++ + WI +V+N
Sbjct: 196 TAYMGDSGGPLLCAGVAHGIV-SYGDSHGKPPAVFTRISAYVPWIKTVIN 244
>ref|NP_034912.3| mast cell protease 9 precursor [Mus musculus].
Length = 246
Score = 86.7 bits (213), Expect = 3e-17
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQ---KQGR-PFCAGALVHPRFVLTAASCFRGKNSGSASVVL 342
+I+GG ++P P++A + K+G C G L+ P+FV+TAA C + +V L
Sbjct: 20 EIIGGVESEPHSRPYMAYVNTFSKKGYVAICGGFLIAPQFVMTAAHC----SGRRMTVTL 75
Query: 343 GAYDLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNA 519
GA+++R++E ++Q + I Y+ +A LT +V +VPLP +
Sbjct: 76 GAHNVRKRECTQQKIKVEKYILPPNYNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSD 135
Query: 520 TVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCL--------PRDMCIGVISRRG 675
+ GT C AGWG +++ S R + + + +C+G ++
Sbjct: 136 FAKPGTMCWAAGWGRTGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVA 195
Query: 676 RISQGDRGTPLVCNGLAQGV 735
+ GD G PL+C G+A G+
Sbjct: 196 SVYMGDSGGPLLCAGVAHGI 215
>ref|NP_038487.1| complement factor D precursor [Mus musculus].
Length = 259
Score = 86.7 bits (213), Expect = 3e-17
Identities = 69/232 (29%), Positives = 101/232 (43%), Gaps = 16/232 (6%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRG-KNSGSASVVLGAYD 354
I+GG+ A P++AS+Q G C G L+ ++VL+AA C G + S V+LGA+
Sbjct: 26 ILGGQEAAAHARPYMASVQVNGTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHS 85
Query: 355 LRQQEQSRQTFSIRSISQN-GYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEA 531
L E ++ + ++S+ + G P A L P V +PL ++ VE
Sbjct: 86 LSAPEPYKRWYDVQSVVPHPGSRPDSLEDDLILFKLSQNASLGPHVRPLPLQYEDKEVEP 145
Query: 532 GTNCQVAGWGTQRLRRLFSRFPRVLNVTVTS----NPCLPRDMCIGVI--------SRRG 675
GT C VAGWG R P VL+ S C R GV+ S R
Sbjct: 146 GTLCDVAGWGVVTHA---GRRPDVLHQLRVSIMNRTTCNLRTYHDGVVTINMMCAESNRR 202
Query: 676 RISQGDRGTPLVCNGLAQGVA--XXXXXXXXXXXXXXXXVALFRNWIDSVLN 825
+GD G+PLVC +GV V+ +R WI+++ N
Sbjct: 203 DTCRGDSGSPLVCGDAVEGVVTWGSRVCGNGKKPGVYTRVSSYRMWIENITN 254
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,799,529
Number of extensions: 1066841
Number of successful extensions: 5913
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 5635
Number of HSP's successfully gapped: 111
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123035.1| PREDICTED: azurocidin-like [Sus scrofa]. 392 e-109
Alignment gi|XP_003123034.1| PREDICTED: neutrophil elastase-like [Sus scr... 148 4e-36
Alignment gi|XP_003354013.1| PREDICTED: myeloblastin-like [Sus scrofa]. 142 3e-34
Alignment gi|NP_001137183.1| granzyme K [Sus scrofa]. 100 2e-21
Alignment gi|NP_001137182.1| granzyme B [Sus scrofa]. 97 1e-20
Alignment gi|XP_003123033.1| PREDICTED: complement factor D [Sus scrofa]. 96 2e-20
Alignment gi|XP_001926799.1| PREDICTED: cathepsin G-like [Sus scrofa]. 94 1e-19
Alignment gi|NP_001137181.1| granzyme A [Sus scrofa]. 91 1e-18
Alignment gi|XP_003361140.1| PREDICTED: granzyme A-like [Sus scrofa]. 91 1e-18
Alignment gi|XP_003128587.2| PREDICTED: mast cell protease 3-like [Sus sc... 87 1e-17
>ref|XP_003123035.1| PREDICTED: azurocidin-like [Sus scrofa].
Length = 246
Score = 392 bits (1008), Expect = e-109
Identities = 200/231 (86%), Positives = 200/231 (86%)
Frame = +1
Query: 145 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 324
TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG
Sbjct: 16 TSRVGLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSG 75
Query: 325 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPL 504
SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDP EARLTPSVALVPL
Sbjct: 76 SASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQLDREARLTPSVALVPL 135
Query: 505 PPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRIS 684
PPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGV SRRGRIS
Sbjct: 136 PPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVFSRRGRIS 195
Query: 685 QGDRGTPLVCNGLAQGVAXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA 837
QGDRGTPLVCNGLAQGVA VALFRNWIDSVLNNPPA
Sbjct: 196 QGDRGTPLVCNGLAQGVASFLRRRFRRSSGFFTRVALFRNWIDSVLNNPPA 246
>ref|XP_003123034.1| PREDICTED: neutrophil elastase-like [Sus scrofa].
Length = 267
Score = 148 bits (374), Expect = 4e-36
Identities = 85/224 (37%), Positives = 117/224 (52%), Gaps = 2/224 (0%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASV 336
G A ++IVGGR A+P +PF+AS+Q++G FC G L+ FVL+AA C G N S V
Sbjct: 23 GPALASEIVGGRPARPHAWPFMASLQRRGSHFCGGTLIARNFVLSAAHCLNGLNFRSVRV 82
Query: 337 VLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQN 516
VLGA++LR+ E +RQ F I+ + +NG+DP A + +V + LP Q+
Sbjct: 83 VLGAHNLRRGESTRQKFRIQRVFENGFDPMTLRNDIVVLQLNRFAFINSNVQVAQLPAQD 142
Query: 517 ATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQGDR 696
V G C GWG R R + LNVTV + C P ++C V R+ I GD
Sbjct: 143 QGVGEGVRCLAMGWGQLGTNRPPPRVLQQLNVTVVTALCRPTNVCTLVPGRQAGICFGDS 202
Query: 697 GTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVL 822
G PLVCNGL QG+ A F +WI+S++
Sbjct: 203 GGPLVCNGLVQGIDSFIRGGCGSGLFPDTFASTAKFADWINSII 246
>ref|XP_003354013.1| PREDICTED: myeloblastin-like [Sus scrofa].
Length = 268
Score = 142 bits (358), Expect = 3e-34
Identities = 86/229 (37%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Frame = +1
Query: 157 GLATLADIVGGRRAQPQEFPFLASIQKQGRP---FCAGALVHPRFVLTAASCFRGKNSGS 327
G A +IVGG+ AQP P++AS+Q P FC G L+HP FVLTAA C N
Sbjct: 23 GAARAVEIVGGQEAQPHSRPYVASLQLPWPPNSHFCGGTLIHPSFVLTAAHCLNTMNPTR 82
Query: 328 ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLP 507
+VVLGA++L+ E ++Q F I + +N YDP A L VA+ LP
Sbjct: 83 VNVVLGAHNLQTPEPTQQIFRIARLFENNYDPQQKLNDVLLLQLDRPATLNTQVAVAQLP 142
Query: 508 PQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQ 687
Q+ + GT C GWG R + LNVTV + C P+++C V R I
Sbjct: 143 QQDQLLPHGTRCLAMGWGRLGTLEPQPRVLQELNVTVVTFLCRPQNVCTFVPQRSAGICF 202
Query: 688 GDRGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNN 828
GD G PL+C+G+ QGV VAL+ NWI SVL +
Sbjct: 203 GDSGGPLICDGVLQGVDSFVIRGCATGQFPDFFARVALYVNWIHSVLRS 251
>ref|NP_001137183.1| granzyme K [Sus scrofa].
Length = 264
Score = 99.8 bits (247), Expect = 2e-21
Identities = 73/198 (36%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Frame = +1
Query: 175 DIVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASC-FRGKNSGSASVVLGAY 351
+IVGGR P PF+ASIQ G C G L+HP++VLTAA C +R SA VVLGA+
Sbjct: 26 EIVGGREVSPHSKPFMASIQYSGHHICGGVLIHPQWVLTAAHCYYRFAKGQSAKVVLGAH 85
Query: 352 DLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVE 528
L + E S+QTF I+ I + A+L + L+ P +
Sbjct: 86 SLSKNEASKQTFEIKKFIPFPRFTSDPKSNDIMLVELRKAAKLNNHIQLLH-PRSKNDIR 144
Query: 529 AGTNCQVAGWGTQRLRRLF-SRFPRVLNVTVTS------------NPCLPRDM-CIGVIS 666
AGT CQV GWG L S R + VTV S +P + + M C G
Sbjct: 145 AGTKCQVIGWGATDPDCLSPSDTLREVTVTVISRKVCNSRSYYNHDPIITKTMLCAGDTR 204
Query: 667 RRGRISQGDRGTPLVCNG 720
+ QGD G PLVC G
Sbjct: 205 GQKDSCQGDSGGPLVCKG 222
>ref|NP_001137182.1| granzyme B [Sus scrofa].
Length = 248
Score = 97.4 bits (241), Expect = 1e-20
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 14/205 (6%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQKQ---GRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GG A+P P++A +Q Q R C G L+ FVLTAA C+ S +
Sbjct: 18 AEAGEIIGGHEAKPHSRPYMAYLQIQDQDNRSRCGGFLIREDFVLTAAHCW----GSSIN 73
Query: 334 VVLGAYDLRQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V LGA+++++QE+++Q +R +I Y+ +A+LT +V + LP
Sbjct: 74 VTLGAHNIKKQEETQQVIPVRKAIRHPDYNEKRISNDIMLLQLERKAKLTKAVKTLGLPG 133
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNP----CLPR------DMCIGV 660
A V+ G C VAGWG Q R +++ + + +T+ + LP +C+G
Sbjct: 134 AKARVKPGQVCSVAGWG-QVERGIYTDTLQEVKLTLQKDQECDSYLPNYYNGNTQLCVGD 192
Query: 661 ISRRGRISQGDRGTPLVCNGLAQGV 735
++ +GD G PLVCN +AQG+
Sbjct: 193 PKKKQATFKGDSGGPLVCNNVAQGI 217
>ref|XP_003123033.1| PREDICTED: complement factor D [Sus scrofa].
Length = 259
Score = 96.3 bits (238), Expect = 2e-20
Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GG+ A+ E P++AS+Q G+ C G LV ++VL+AA C G V+LGA+ L
Sbjct: 27 ILGGQEAKSHERPYMASVQVNGKHVCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSL 86
Query: 358 RQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
Q E S++ + + R++ P +A L P+V + ++ V AG
Sbjct: 87 SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAG 146
Query: 535 TNCQVAGWG-TQRLRRLFSRFPRVLNVTVTSNPCLPRDMCIGVISRRGRISQ-------- 687
T C VAGWG R R +L + C R G I+ R ++
Sbjct: 147 TLCDVAGWGVVSHTGRRPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAESNRRDSCK 206
Query: 688 GDRGTPLVCNGLAQGV--AXXXXXXXXXXXXXXXXVALFRNWIDSVLNNPPA 837
GD G PLVC G+A+GV + +A + WID V+ + A
Sbjct: 207 GDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWIDGVMADSAA 258
>ref|XP_001926799.1| PREDICTED: cathepsin G-like [Sus scrofa].
Length = 255
Score = 94.0 bits (232), Expect = 1e-19
Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Frame = +1
Query: 163 ATLADIVGGRRAQPQEFPFLASIQ---KQGRPFCAGALVHPRFVLTAASCFRGKNSGSAS 333
A +I+GG+ A+P P++A + QG+ C G LV FV+TAA CF
Sbjct: 16 ARAGEIIGGQEARPHSRPYMAYMHFQSAQGQKTCGGFLVRKDFVMTAAHCF----GRQTV 71
Query: 334 VVLGAYDLRQQEQSRQTFSI-RSISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPP 510
V+LGA+++R+ E+++Q S+ R+I Y+P R V V LP
Sbjct: 72 VILGAHNIRRFERTQQRISVLRAIPHPRYNPYNHLNDIMLLQLANRTRQNRFVRPVALPR 131
Query: 511 QNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSNPCLPR--------DMCIGVIS 666
A + G C VAGWG L R V C R MC+G
Sbjct: 132 TQARLSPGARCTVAGWGLVSLSRRTDTLQEVQLTVQRDGECHRRFDHYNGRIQMCVGDPR 191
Query: 667 RRGRISQGDRGTPLVCNGLAQGV 735
R GD G PLVC +AQG+
Sbjct: 192 ERKSAFLGDSGGPLVCGRVAQGI 214
>ref|NP_001137181.1| granzyme A [Sus scrofa].
Length = 258
Score = 90.5 bits (223), Expect = 1e-18
Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GG P ++A I+ G CAGAL+ +VLTAA C G+ V+LGA+
Sbjct: 29 IIGGNEVSPHTRRYMALIE--GLKVCAGALIKENWVLTAAHC---DLKGNPQVILGAHST 83
Query: 358 RQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
+E+ QTFSI+ +I +DP +A +T +V ++ LP VE
Sbjct: 84 SHKEKYDQTFSIKKAIPYPCFDPQTFEGDLQLLQLEGKATMTKAVGILKLPNTGEDVEPH 143
Query: 535 TNCQVAGWGTQRLRRL-FSRFPRVLNVTVTS------------NPCLPRDMCIGVISRRG 675
T C VAGWG+ R S R +N+TV NP + M I + R+G
Sbjct: 144 TKCHVAGWGSTRKDSCKISNTLREVNITVIDRKMCNDAQHYNFNPVIDLGM-ICAVGRKG 202
Query: 676 R--ISQGDRGTPLVCNGLAQGV 735
+GD G+PL+C+ + +GV
Sbjct: 203 EDDSCEGDSGSPLICDNIFRGV 224
>ref|XP_003361140.1| PREDICTED: granzyme A-like [Sus scrofa].
Length = 258
Score = 90.5 bits (223), Expect = 1e-18
Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDL 357
I+GG P ++A I+ G CAGAL+ +VLTAA C G+ V+LGA+
Sbjct: 29 IIGGNEVSPHTRRYMALIE--GLKVCAGALIKENWVLTAAHC---DLKGNPQVILGAHST 83
Query: 358 RQQEQSRQTFSIR-SISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATVEAG 534
+E+ QTFSI+ +I +DP +A +T +V ++ LP VE
Sbjct: 84 SHKEKYDQTFSIKKAIPYPCFDPQTFEGDLQLLQLEGKATMTKAVGILKLPNTGKDVEPH 143
Query: 535 TNCQVAGWGTQRLRRL-FSRFPRVLNVTVTS------------NPCLPRDMCIGVISRRG 675
T C VAGWG+ R S R +N+TV NP + M I + R+G
Sbjct: 144 TKCHVAGWGSTRKDSCKISNTLREVNITVIDRKMCNDAQHYNFNPVIDLGM-ICAVGRKG 202
Query: 676 R--ISQGDRGTPLVCNGLAQGV 735
+GD G+PL+C+ + +GV
Sbjct: 203 EDDSCEGDSGSPLICDNIFRGV 224
>ref|XP_003128587.2| PREDICTED: mast cell protease 3-like [Sus scrofa].
Length = 241
Score = 87.4 bits (215), Expect = 1e-17
Identities = 64/198 (32%), Positives = 92/198 (46%), Gaps = 12/198 (6%)
Frame = +1
Query: 178 IVGGRRAQPQEFPFLA-SIQK-QGRP-FCAGALVHPRFVLTAASCFRGKNSGSASVVLGA 348
I+GG P P++A S+ K GR C G LV FVLTAA C+ S V LG
Sbjct: 21 IIGGHEVTPHSRPYMAYSVSKTSGRTSVCGGFLVSTNFVLTAAHCW----GSSIKVTLGG 76
Query: 349 YDLRQQEQSRQTFSIRS-ISQNGYDPXXXXXXXXXXXXXXEARLTPSVALVPLPPQNATV 525
++++++E+++Q +++ I YD A+L P+V L+ LP V
Sbjct: 77 HNIQEKEETQQVIPVKNAICHPDYDSKICANDIMLLQLMWAAKLGPAVGLLKLPRYRELV 136
Query: 526 EAGTNCQVAGWGTQRLRRLFSRFPRVLNVTV-TSNPCLPR-------DMCIGVISRRGRI 681
GT C VAGWG + + R +V V C R +C G ++
Sbjct: 137 MPGTVCSVAGWGRLGVNSPSATTLRETDVEVQRDEQCSGRFKYNSTIQICAGSPTKMNNS 196
Query: 682 SQGDRGTPLVCNGLAQGV 735
GD G PLVC G+AQG+
Sbjct: 197 FLGDSGGPLVCKGVAQGI 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,314,371
Number of extensions: 862802
Number of successful extensions: 5101
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 4950
Number of HSP's successfully gapped: 54
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007527
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 593 e-167
>Sscrofa_Chr02
|| Length = 162569375
Score = 593 bits (299), Expect = e-167
Identities = 306/307 (99%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 685 cagggagacagaggcacccccctcgtctgcaacggcctggcgcagggcgtggcctccttc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284784 cagggagacagaggcacccccctcgtctgcaacggcctggcgcagggcgtggcctccttc 78284725
Query: 745 ctccggaggcgtttccgcaggagctccggcttcttcacccgcgtggcgctcttcagaaat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284724 ctccggaggcgtttccgcaggagctccggcttcttcacccgcgtggcgctcttcagaaat 78284665
Query: 805 tggattgattcagttctcaacaacccgccggcctgaaggatcccctcgccgagcccgtgg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284664 tggattgattcagttctcaacaacccgccggcctgaaggatcccctcgccgagcccgtgg 78284605
Query: 865 gaaggggggcctgttagccccctggagccctgcccccactgccacacctcccgcgctgcg 924
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284604 g-aggggggcctgttagccccctggagccctgcccccactgccacacctcccgcgctgcg 78284546
Query: 925 tgtcccatcccaaagccccatcctggaccgctctgtcgaggctgtaataaagaagctgtt 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78284545 tgtcccatcccaaagccccatcctggaccgctctgtcgaggctgtaataaagaagctgtt 78284486
Query: 985 accattc 991
|||||||
Sbjct: 78284485 accattc 78284479
Score = 458 bits (231), Expect = e-126
Identities = 234/235 (99%)
Strand = Plus / Minus
Query: 454 cagctggaccgtgaggccagactcacccccagtgtggccctggtaccgctgcccccgcag 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78285682 cagctggaccgtgaggccagactcacccccagtgtggccctggtaccgctgcccccgcag 78285623
Query: 514 aatgccacagtggaagctggcaccaactgccaagttgcgggctgggggacccagcggctt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78285622 aatgccacagtggaagctggcaccaactgccaagttgcgggctgggggacccagcggctt 78285563
Query: 574 aggaggcttttctcccgcttcccaagggtgctcaatgtcaccgtgacctcaaacccgtgt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78285562 aggaggcttttctcccgcttcccaagggtgctcaatgtcaccgtgacctcaaacccgtgt 78285503
Query: 634 ctccccagagacatgtgcattggtgtcatcagccgccggggccgcatcagccagg 688
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 78285502 ctccccagagacatgtgcattggtgtcttcagccgccggggccgcatcagccagg 78285448
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 157 ggcttggccaccctggcagacattgtgggcggcaggagggcccagccgcaggagttcccg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287038 ggcttggccaccctggcagacattgtgggcggcaggagggcccagccgcaggagttcccg 78286979
Query: 217 tttctggcctccattcagaaacaagggaggcccttttgcgccggagccctggtccatccc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286978 tttctggcctccattcagaaacaagggaggcccttttgcgccggagccctggtccatccc 78286919
Query: 277 cgcttcgtcctgacagcggccagctgcttccgtggcaag 315
|||||||||||||||||||||||||||||||||||||||
Sbjct: 78286918 cgcttcgtcctgacagcggccagctgcttccgtggcaag 78286880
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 2 cccactgggagggcctggcccctgggagggtgtgggtgccaacggctgagactgggtata 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287428 cccactgggagggcctggcccctgggagggtgtgggtgccaacggctgagactgggtata 78287369
Query: 62 aggcaccaccatcccagctgcccccggctgttcccatcatgccagcactcagattcctgg 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 78287368 aggcaccaccatcccagctgccccccgctgttcccatcatgccagcactcagattcctgg 78287309
Query: 122 ccctgctggccagcctgctggcaacctccagggttgg 158
|||||||||||||||||||||||||||||||||||||
Sbjct: 78287308 ccctgctggccagcctgctggcaacctccagggttgg 78287272
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 315 gaacagcggaagtgcctctgtggtgctgggggcctatgacctgaggcagcaggagcagtc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286455 gaacagcggaagtgcctctgtggtgctgggggcctatgacctgaggcagcaggagcagtc 78286396
Query: 375 ccggcagacattctccatcaggagcatcagccagaacggctatgacccccggcagaatct 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78286395 ccggcagacattctccatcaggagcatcagccagaacggctatgacccccggcagaatct 78286336
Query: 435 gaacgatgtgctgctgctgcag 456
||||||||||||||||||||||
Sbjct: 78286335 gaacgatgtgctgctgctgcag 78286314
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,539,370
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 5
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)