Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776633.1| thioredoxin, mitochondrial precursor [Bos tauru... 238 7e-63
Alignment gi|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bo... 53 4e-07
Alignment gi|NP_776393.1| thioredoxin [Bos taurus]. 52 5e-07
>ref|NP_776633.1| thioredoxin, mitochondrial precursor [Bos taurus].
Length = 166
Score = 238 bits (606), Expect = 7e-63
Identities = 115/130 (88%), Positives = 122/130 (93%)
Frame = +3
Query: 72 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 251
MAQRLLLRRFL S++S KPS SRWAP+ASRAL+TPQ S LT TPSQARS+YTTRVC+T
Sbjct: 1 MAQRLLLRRFLTSIISGKPSQSRWAPVASRALKTPQYSPGYLTVTPSQARSIYTTRVCST 60
Query: 252 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 431
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120
Query: 432 HTDLAIEYEV 461
HTDLA+EYEV
Sbjct: 121 HTDLALEYEV 130
>ref|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bos taurus].
Length = 643
Score = 52.8 bits (125), Expect = 4e-07
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN ++V+F+A WCG CK L P EK ++K + +AKVD TDLA +
Sbjct: 187 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDLAKRF 246
Query: 456 EVLQ*GSVTFKGKKPAHNRNG 518
+V ++ K A + NG
Sbjct: 247 DVSSYPTLKIFRKGKAFSYNG 267
>ref|NP_776393.1| thioredoxin [Bos taurus].
Length = 105
Score = 52.4 bits (124), Expect = 5e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 303 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 461
E VVVDF A WCGPCK++ P +++++ VV +VD+DD D+A E EV
Sbjct: 20 EKLVVVDFSATWCGPCKMIKPFFHS-LSEKYSNVVFLEVDVDDCQDVAAECEV 71
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,979,101
Number of extensions: 1003734
Number of successful extensions: 6306
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6216
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 192
Effective length of database: 14,339,486
Effective search space: 2753181312
Effective search space used: 2753181312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondria... 238 2e-63
Alignment gi|XP_848238.1| PREDICTED: similar to Protein disulfide-isomera... 53 4e-07
Alignment gi|XP_539831.2| PREDICTED: similar to Protein disulfide-isomera... 53 4e-07
Alignment gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ... 52 1e-06
>ref|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondrial precursor (Mt-Trx)
(MTRX) (Thioredoxin-2) [Canis familiaris].
Length = 250
Score = 238 bits (608), Expect(2) = 2e-63
Identities = 120/144 (83%), Positives = 125/144 (86%)
Frame = +3
Query: 30 GGPCCASLRSRCWEMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTP 209
G ASLRS C EMAQRLLLRRFLASV+SRKP RWAPL RAL S +LT TP
Sbjct: 74 GRAVSASLRSGCREMAQRLLLRRFLASVISRKPPQGRWAPLTCRALPC---SPGHLTATP 130
Query: 210 SQARSLYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 389
+QARS+YTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK
Sbjct: 131 TQARSIYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 190
Query: 390 QHGKVVMAKVDIDDHTDLAIEYEV 461
QHGKVVMAKVDIDDHTDLA+EYEV
Sbjct: 191 QHGKVVMAKVDIDDHTDLALEYEV 214
Score = 23.1 bits (48), Expect(2) = 2e-63
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 1 VTTEVPLTGGAGRAV 45
VT V LTGG GRAV
Sbjct: 63 VTKGVSLTGGEGRAV 77
>ref|XP_848238.1| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 3 [Canis familiaris].
Length = 643
Score = 52.8 bits (125), Expect = 4e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244
Query: 456 EV 461
EV
Sbjct: 245 EV 246
>ref|XP_539831.2| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 1 [Canis familiaris].
Length = 628
Score = 52.8 bits (125), Expect = 4e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244
Query: 456 EV 461
EV
Sbjct: 245 EV 246
>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
(Surface associated sulphydryl protein) (SASP) [Canis
familiaris].
Length = 219
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +3
Query: 312 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 461
VVVDF A WCGPCK++ P +++++ VV +VD+DD D+A E EV
Sbjct: 137 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVVFLEVDVDDCQDVASECEV 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,964,001
Number of extensions: 957546
Number of successful extensions: 6623
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6523
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 191
Effective length of database: 15,474,232
Effective search space: 2955578312
Effective search space used: 2955578312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapi... 229 2e-60
Alignment gi|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo ... 52 5e-07
Alignment gi|NP_003320.2| thioredoxin [Homo sapiens]. 51 1e-06
>ref|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapiens].
Length = 166
Score = 229 bits (584), Expect = 2e-60
Identities = 111/130 (85%), Positives = 118/130 (90%)
Frame = +3
Query: 72 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 251
MAQRLLLRRFLASV+SRKPS +W PL SRALQTPQ S LT TP+ AR++YTTR+ T
Sbjct: 1 MAQRLLLRRFLASVISRKPSQGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLT 60
Query: 252 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 431
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120
Query: 432 HTDLAIEYEV 461
HTDLAIEYEV
Sbjct: 121 HTDLAIEYEV 130
>ref|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo sapiens].
Length = 645
Score = 52.4 bits (124), Expect = 5e-07
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 188 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 247
Query: 456 EV 461
+V
Sbjct: 248 DV 249
>ref|NP_003320.2| thioredoxin [Homo sapiens].
Length = 105
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3
Query: 312 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 461
VVVDF A WCGPCK++ P +++++ V+ +VD+DD D+A E EV
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEV 71
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,175,014
Number of extensions: 925916
Number of successful extensions: 6174
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6078
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 191
Effective length of database: 14,934,836
Effective search space: 2852553676
Effective search space used: 2852553676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064297.1| thioredoxin, mitochondrial precursor [Mus muscu... 218 6e-57
Alignment gi|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus]. 54 2e-07
Alignment gi|NP_035790.1| thioredoxin [Mus musculus]. 50 2e-06
>ref|NP_064297.1| thioredoxin, mitochondrial precursor [Mus musculus].
Length = 166
Score = 218 bits (554), Expect = 6e-57
Identities = 105/130 (80%), Positives = 113/130 (86%)
Frame = +3
Query: 72 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 251
MAQRLLL RFL SV+SRKP WA L S+ LQTPQ + LT PS AR+++TTRVC T
Sbjct: 1 MAQRLLLGRFLTSVISRKPPQGVWASLTSKTLQTPQYNAGGLTVMPSPARTVHTTRVCLT 60
Query: 252 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 431
TFN+QDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61 TFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120
Query: 432 HTDLAIEYEV 461
HTDLAIEYEV
Sbjct: 121 HTDLAIEYEV 130
>ref|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus].
Length = 641
Score = 53.5 bits (127), Expect = 2e-07
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN+ ++V+F+A WCG CK L P EK ++K+ + +AKVD + TDLA +
Sbjct: 184 DDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRF 243
Query: 456 EV 461
+V
Sbjct: 244 DV 245
>ref|NP_035790.1| thioredoxin [Mus musculus].
Length = 105
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +3
Query: 312 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 461
VVVDF A WCGPCK++ P + K + VV +VD+DD D+A + EV
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLCDK-YSNVVFLEVDVDDCQDVAADCEV 71
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,770,792
Number of extensions: 760091
Number of successful extensions: 4855
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4748
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 192
Effective length of database: 12,583,923
Effective search space: 2416113216
Effective search space used: 2416113216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa]. 264 4e-71
Alignment gi|NP_999478.1| thioredoxin [Sus scrofa]. 52 4e-07
Alignment gi|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-li... 52 6e-07
Alignment gi|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa]. 48 6e-06
>ref|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa].
Length = 166
Score = 264 bits (675), Expect = 4e-71
Identities = 130/130 (100%), Positives = 130/130 (100%)
Frame = +3
Query: 72 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 251
MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT
Sbjct: 1 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 60
Query: 252 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 431
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120
Query: 432 HTDLAIEYEV 461
HTDLAIEYEV
Sbjct: 121 HTDLAIEYEV 130
>ref|NP_999478.1| thioredoxin [Sus scrofa].
Length = 105
Score = 52.0 bits (123), Expect = 4e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 303 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 461
E VVVDF A WCGPCK++ P +++++ VV +VD+DD D+A E EV
Sbjct: 20 EKLVVVDFSATWCGPCKMIKPFFHS-LSEKYSNVVFLEVDVDDCQDVASECEV 71
>ref|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa].
Length = 646
Score = 51.6 bits (122), Expect = 6e-07
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +3
Query: 285 DRVVNSETPVVVDFHAQWCGPCKILGPRLE---KVVAKQHGKVVMAKVDIDDHTDLAIEY 455
D VVN ++V+F+A WCG CK L P E K ++K+ + +AKVD TDLA +
Sbjct: 189 DEVVNDADIILVEFYAPWCGHCKKLAPEYERAAKELSKRSPPIPLAKVDATAETDLAKRF 248
Query: 456 EV 461
+V
Sbjct: 249 DV 250
>ref|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa].
Length = 70
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +3
Query: 303 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 449
E VVVDF A WCGPCK++ P +++++ VV +VD+DD DL +
Sbjct: 16 EKLVVVDFSATWCGPCKMIKPFFHS-LSEKYSNVVFLEVDVDDCQDLLL 63
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,013,140
Number of extensions: 756848
Number of successful extensions: 4414
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4299
Number of HSP's successfully gapped: 4
Length of query: 293
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,904,026
Effective search space: 1736285070
Effective search space used: 1736285070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007528
(880 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 531 e-148
Sscrofa_Chr04 283 8e-74
>Sscrofa_Chr05
|| Length = 111506441
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Plus
Query: 70 agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998033 agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 8998092
Query: 130 ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998093 ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 8998152
Query: 190 gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998153 gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 8998212
Query: 250 caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998213 caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 8998272
Query: 310 cagtggttgtggatttccatgcacagtg 337
||||||||||||||||||||||||||||
Sbjct: 8998273 cagtggttgtggatttccatgcacagtg 8998300
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 457 aggtgctccagtgaggatctgtgacctttaaggggaagaaacctgcccacaatcgcaacg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021575 aggtgctccagtgaggatctgtgacctttaaggggaagaaacctgcccacaatcgcaacg 9021634
Query: 517 ggagtcaatcaagttcagcccaggtaagacggggctggcgcgggtctcagcccggagacc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021635 ggagtcaatcaagttcagcccaggtaagacggggctggcgcgggtctcagcccggagacc 9021694
Query: 577 ggggccgggggagccccggggcacttgggggcaccactgcaggggcgcgcccttgcggaa 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021695 ggggccgggggagccccggggcacttgggggcaccactgcaggggcgcgcccttgcggaa 9021754
Query: 637 agtgttctggcagaggttccgtcgggctt 665
|||||||||||||||||||||||||||||
Sbjct: 9021755 agtgttctggcagaggttccgtcgggctt 9021783
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 335 gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001237 gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 9001296
Query: 395 tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001297 tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 9001356
Query: 455 cgaggt 460
||||||
Sbjct: 9001357 cgaggt 9001362
Score = 141 bits (71), Expect = 7e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcgcttcgctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997187 gtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcgcttcgctctc 8997246
Query: 61 gttgctgggag 71
|||||||||||
Sbjct: 8997247 gttgctgggag 8997257
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 715 tgcccatataaggtgagcgcggccccagcgccctgggagagcggttgtcgtcacctgcgt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021833 tgcccatataaggtgagcgcggccccagcgccctgggagagcggttgtcgtcacctgcgt 9021892
Query: 775 ccgtcgg 781
|||||||
Sbjct: 9021893 ccgtcgg 9021899
Score = 67.9 bits (34), Expect = 9e-09
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 827 atcctttcaaggccgcggcccccagcgccctcctggcggggagcgccgccccgc 880
|||||| |||||||||| ||||||||||| ||||| |||| |||||||||||||
Sbjct: 9021945 atccttccaaggccgcgccccccagcgccttcctgccgggaagcgccgccccgc 9021998
>Sscrofa_Chr04
|| Length = 143465943
Score = 283 bits (143), Expect = 8e-74
Identities = 343/407 (84%), Gaps = 2/407 (0%)
Strand = Plus / Minus
Query: 38 gtgctgtgcgtcgcttcgctctcgttgctgggagatggctcagcgtcttctcctgaggag 97
||||||||| || || |||||| ||| |||| ||||||||| | ||||||||||||||
Sbjct: 99319556 gtgctgtgcatccctctgctctcactgcagggaaatggctcagtgacttctcctgaggag 99319497
Query: 98 gttcctggcctctgtagtctccaggaagccctctcatagtcggtgggcacccctcgcttc 157
|||||||| |||||| |||| |||||| ||||| |||||||||||||||| ||| ||
Sbjct: 99319496 gttcctggggtctgtaatctctgagaagccatctcagagtcggtgggcaccccacgcctc 99319437
Query: 158 cagagccctgcagaccccacagctcagccttagtaacctgacaggaacacccagccaagc 217
||| |||||||||||||||||||||| | |||||||||||||| || | ||| |||||
Sbjct: 99319436 cagggccctgcagaccccacagctcatcactagtaacctgacagtaatatccaatcaagc 99319377
Query: 218 ccggtcattatacact-acccgggtctgtacaacaacctttaacatccaggatggacctg 276
| ||||| ||| |||| ||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 99319376 ctggtcaatattcactcaccagagtctgtacaatgatctttaacatccaggatggacctg 99319317
Query: 277 actttcaagaccgagttgtcaacagtgagacgccagtggttgtggatttccatgcacagt 336
|||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 99319316 actttcgagaccgagtggacaacagtgaga-tacaggggttgtggatttccatgcacagt 99319258
Query: 337 ggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagcatg 396
||||||| |||| |||| ||||||||||||||| ||||||||||||||| | |||||
Sbjct: 99319257 ggtgtgggccctataagaccctggggccaaggttgcagaaggtggtggccatgtagcata 99319198
Query: 397 gaaaggtggtgatggccaaggtggatatcgacgaccacacagacctc 443
||||| | | ||||||||||||||| || |||| ||||| ||||
Sbjct: 99319197 gaaagacagccaaggccaaggtggatattgatgaccccacagccctc 99319151
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,281,021
Number of extensions: 111
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 7
Length of query: 880
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 859
Effective length of database: 2,808,413,156
Effective search space: 2412426901004
Effective search space used: 2412426901004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)