Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776633.1| thioredoxin, mitochondrial precursor [Bos tauru... 304 8e-83
Alignment gi|NP_776393.1| thioredoxin [Bos taurus]. 70 4e-12
Alignment gi|NP_776560.1| protein disulfide-isomerase precursor [Bos taur... 64 3e-10
Alignment gi|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos t... 60 3e-09
Alignment gi|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bo... 60 4e-09
Alignment gi|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos... 56 6e-08
Alignment gi|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos... 55 1e-07
Alignment gi|NP_001092331.1| protein disulfide-isomerase A2 [Bos taurus]. 54 2e-07
Alignment gi|XP_002698560.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 53 4e-07
Alignment gi|XP_590020.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, m... 53 4e-07
>ref|NP_776633.1| thioredoxin, mitochondrial precursor [Bos taurus].
Length = 166
Score = 304 bits (779), Expect = 8e-83
Identities = 150/166 (90%), Positives = 158/166 (95%)
Frame = +1
Query: 82 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
MAQRLLLRRFL S++S KPS SRWAP+ASRAL+TPQ S LT TPSQARS+YTTRVC+T
Sbjct: 1 MAQRLLLRRFLTSIISGKPSQSRWAPVASRALKTPQYSPGYLTVTPSQARSIYTTRVCST 60
Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
HTDLA+EYEVSAVPTVLA+KNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
>ref|NP_776393.1| thioredoxin [Bos taurus].
Length = 105
Score = 69.7 bits (169), Expect = 4e-12
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +1
Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
E VVVDF A WCGPCK++ P + ++++ VV +VD+DD D+A E EV +PT
Sbjct: 20 EKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQ 78
Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
K G V +F G ++++LEA + +LI
Sbjct: 79 FFKKGQKVGEFSG-ANKEKLEATINELI 105
>ref|NP_776560.1| protein disulfide-isomerase precursor [Bos taurus].
Length = 510
Score = 63.5 bits (153), Expect = 3e-10
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEY 465
D + + ++V+F+A WCG CK L P K K + ++ +AKVD + +DLA +Y
Sbjct: 37 DEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQY 96
Query: 466 EVSAVPTVLAIKNGDVVD--KFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
V PT+ KNGD ++ ++ D + +LKK G A D
Sbjct: 97 GVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSD 144
>ref|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos taurus].
Length = 505
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
+F+ R+ ++ + ++V+F A WCG CK L P E + G V +AKVD +T+
Sbjct: 34 NFESRITDTGSSGLMLVEFFAPWCGHCKKLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
+Y VS PT+ ++G+ + G + D + + LKK G
Sbjct: 94 KYGVSGYPTLKIFRDGEESGAYDGPRTADGIVSHLKKQAG 133
>ref|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bos taurus].
Length = 643
Score = 59.7 bits (143), Expect = 4e-09
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
D V + V+++F+A WCG CK P EK+ A + + +AK+D + LA +
Sbjct: 72 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAATLKENDPPIPVAKIDATSESALASRF 131
Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
+VS PT+ +K G VD + G + ++++ A +K++
Sbjct: 132 DVSGYPTIKILKKGQEVD-YEGSRTQEEIVAKVKEV 166
Score = 59.7 bits (143), Expect = 4e-09
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN ++V+F+A WCG CK L P EK ++K + +AKVD TDLA +
Sbjct: 187 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDLAKRF 246
Query: 466 EVSAVPTVLAIKNG 507
+VS+ PT+ + G
Sbjct: 247 DVSSYPTLKIFRKG 260
>ref|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos taurus].
Length = 437
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +1
Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
+F D + T + F+A WCG CK L P E + K+ +V +A+VD +L
Sbjct: 336 NFDDAIAEGVT--FIKFYAPWCGHCKDLAPTWEDLSKKEFPGLAEVTIAEVDCTAERNLC 393
Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
+Y V PT+L + G+ V + G +D D L F+
Sbjct: 394 SKYSVRGYPTLLLFRGGEKVGEHSGSRDLDSLHRFV 429
Score = 55.5 bits (132), Expect = 8e-08
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +1
Query: 214 TPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKV- 390
TP + LY ++ G F + F A WCG CK L P E++
Sbjct: 189 TPELKQGLYELSAGNFELHVAQGDHF------------IKFFAPWCGHCKALAPTWEQLA 236
Query: 391 VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLK 567
+ +H + V + KVD H +L +V PT+L ++G VD++ G +D D L +++
Sbjct: 237 LGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLDSLREYVQ 296
>ref|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos taurus].
Length = 105
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
VV++F A+WCGPCK + P + ++ Q+ V+ A VD+D+ +LA Y + AVPT K
Sbjct: 23 VVIEFSAKWCGPCKRIYP-VFHAMSVQYRSVMFANVDVDNARELAQTYHIKAVPTFQLFK 81
Query: 502 NGDVVDKFVGI---KDEDQLEAFL 564
+ + G K E+++ F+
Sbjct: 82 QTKKIFELCGADAKKLEEKIREFM 105
>ref|NP_001092331.1| protein disulfide-isomerase A2 [Bos taurus].
Length = 489
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
++V+F+A WCG C+ L P K ++A + +V +AKVD +LA E+ V+ PT+
Sbjct: 71 LLVEFYAPWCGHCRALAPEYSKAAALLAAESARVTLAKVDGPAEPELAEEFAVTEYPTLK 130
Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
+ G+ +++ G ++ + + +L++ +G A + D
Sbjct: 131 FFREGNRTHPEEYTGPREAEGIAEWLRRRVGPSARQLED 169
>ref|XP_002698560.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 10-like [Bos
taurus].
Length = 793
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/95 (29%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ N + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 461 QNFPANEKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 520
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N + ++ G +Q+ F++ L+
Sbjct: 521 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 554
Score = 52.4 bits (124), Expect = 7e-07
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ + VVDF+A WCGPC+ P E +
Sbjct: 655 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 714
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
GKV KVD + + + A PTV
Sbjct: 715 RTLKGKVKAGKVDCQAYAQTCQKAGIRAYPTV 746
>ref|XP_590020.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 10-like
isoform 2 [Bos taurus].
Length = 793
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/95 (29%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ N + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 461 QNFPANEKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 520
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N + ++ G +Q+ F++ L+
Sbjct: 521 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 554
Score = 52.4 bits (124), Expect = 7e-07
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ + VVDF+A WCGPC+ P E +
Sbjct: 655 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 714
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
GKV KVD + + + A PTV
Sbjct: 715 RTLKGKVKAGKVDCQAYAQTCQKAGIRAYPTV 746
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,047,141
Number of extensions: 1373699
Number of successful extensions: 6792
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6731
Number of HSP's successfully gapped: 23
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondria... 306 7e-85
Alignment gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ... 69 8e-12
Alignment gi|XP_848238.1| PREDICTED: similar to Protein disulfide-isomera... 62 9e-10
Alignment gi|XP_539831.2| PREDICTED: similar to Protein disulfide-isomera... 62 9e-10
Alignment gi|XP_535453.2| PREDICTED: similar to protein disulfide isomera... 60 3e-09
Alignment gi|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, bet... 60 3e-09
Alignment gi|XP_547674.2| PREDICTED: similar to Thioredoxin domain contai... 54 2e-07
Alignment gi|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 54 3e-07
Alignment gi|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 54 3e-07
Alignment gi|XP_862695.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 54 3e-07
>ref|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondrial precursor (Mt-Trx)
(MTRX) (Thioredoxin-2) [Canis familiaris].
Length = 250
Score = 306 bits (784), Expect(2) = 7e-85
Identities = 156/180 (86%), Positives = 161/180 (89%)
Frame = +1
Query: 40 GGPCCASLRSRCWEMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTP 219
G ASLRS C EMAQRLLLRRFLASV+SRKP RWAPL RAL S +LT TP
Sbjct: 74 GRAVSASLRSGCREMAQRLLLRRFLASVISRKPPQGRWAPLTCRALPC---SPGHLTATP 130
Query: 220 SQARSLYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 399
+QARS+YTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK
Sbjct: 131 TQARSIYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 190
Query: 400 QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
QHGKVVMAKVDIDDHTDLA+EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 191 QHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 250
Score = 27.3 bits (59), Expect(2) = 7e-85
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 2 PQEVTTEVPLTGGAGRAV 55
P EVT V LTGG GRAV
Sbjct: 60 PPEVTKGVSLTGGEGRAV 77
>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
(Surface associated sulphydryl protein) (SASP) [Canis
familiaris].
Length = 219
Score = 68.9 bits (167), Expect = 8e-12
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
VVVDF A WCGPCK++ P + ++++ VV +VD+DD D+A E EV +PT K
Sbjct: 137 VVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFK 195
Query: 502 NGDVVDKFVGIKDEDQLEAFLKKLI 576
G V +F G ++++LEA + +LI
Sbjct: 196 KGQKVGEFSG-ANKEKLEATINELI 219
>ref|XP_848238.1| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 3 [Canis familiaris].
Length = 643
Score = 62.0 bits (149), Expect = 9e-10
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244
Query: 466 EVSAVPTVLAIKNGDVVD 519
EVS+ PT+ + G D
Sbjct: 245 EVSSYPTLKIFRKGKPFD 262
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
D V + V+++F+A WCG CK P EK+ + + + +AK+D + LA +
Sbjct: 70 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSESALAGRF 129
Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
VS PT+ +K G+ VD + G + ++++ A +K++
Sbjct: 130 GVSGYPTIKILKKGEAVD-YEGSRTQEEIVAKVKEV 164
>ref|XP_539831.2| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 1 [Canis familiaris].
Length = 628
Score = 62.0 bits (149), Expect = 9e-10
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244
Query: 466 EVSAVPTVLAIKNGDVVD 519
EVS+ PT+ + G D
Sbjct: 245 EVSSYPTLKIFRKGKPFD 262
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
D V + V+++F+A WCG CK P EK+ + + + +AK+D + LA +
Sbjct: 70 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSESALAGRF 129
Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
VS PT+ +K G+ VD + G + ++++ A +K++
Sbjct: 130 GVSGYPTIKILKKGEAVD-YEGSRTQEEIVAKVKEV 164
>ref|XP_535453.2| PREDICTED: similar to protein disulfide isomerase-associated 3
precursor [Canis familiaris].
Length = 687
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
+F+ R+ ++ + ++V+F A WCG CK L P E + G V +AKVD +T+
Sbjct: 216 NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 275
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
+Y VS PT+ ++G+ + G + D + + LKK G
Sbjct: 276 KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 315
>ref|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, beta subunit [Canis
familiaris].
Length = 510
Score = 60.5 bits (145), Expect = 3e-09
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
++V+F+A WCG CK L P K + ++ +AKVD + +DLA +Y V PT+
Sbjct: 46 LLVEFYAPWCGHCKALAPEYAKAAGTLKAEGSEIRLAKVDATEESDLAHQYGVRGYPTIK 105
Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
KNGD ++ ++ + + +LKK G A PD
Sbjct: 106 FFKNGDTAAPREYTAGREAEDIVNWLKKRTGPAATTLPD 144
>ref|XP_547674.2| PREDICTED: similar to Thioredoxin domain containing protein 2
(Spermatid-specific thioredoxin-1) (Sptrx-1) [Canis
familiaris].
Length = 468
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +1
Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
E V VDF A WCGPC+ + P L + ++ ++ VV +VD D+ +L + E+ +PT
Sbjct: 383 ERLVAVDFSATWCGPCRTIKP-LFRSLSLKYEDVVFLEVDADECEELVKDLEIICIPTFQ 441
Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
K + V +F G E +LEA + +L
Sbjct: 442 FYKQEEKVGEFCGAVKE-KLEAIIAEL 467
>ref|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 1 [Canis familiaris].
Length = 794
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/95 (30%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ N + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 462 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 521
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N V ++ G +Q+ F++ L+
Sbjct: 522 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 555
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ + VVDF+A WCGPC+ P E +
Sbjct: 656 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 715
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
GKV KVD + + + A PTV
Sbjct: 716 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 747
>ref|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 6 [Canis familiaris].
Length = 748
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/95 (30%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ N + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 416 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 475
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N V ++ G +Q+ F++ L+
Sbjct: 476 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 509
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ + VVDF+A WCGPC+ P E +
Sbjct: 610 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 669
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
GKV KVD + + + A PTV
Sbjct: 670 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 701
>ref|XP_862695.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 3 [Canis familiaris].
Length = 794
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/95 (30%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ N + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 462 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 521
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N V ++ G +Q+ F++ L+
Sbjct: 522 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 555
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ + VVDF+A WCGPC+ P E +
Sbjct: 656 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 715
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
GKV KVD + + + A PTV
Sbjct: 716 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 747
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,826,640
Number of extensions: 1401942
Number of successful extensions: 7212
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7122
Number of HSP's successfully gapped: 23
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapi... 296 3e-80
Alignment gi|NP_003320.2| thioredoxin [Homo sapiens]. 68 1e-11
Alignment gi|NP_000909.2| protein disulfide-isomerase precursor [Homo sap... 64 2e-10
Alignment gi|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo ... 61 2e-09
Alignment gi|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo ... 60 3e-09
Alignment gi|NP_006801.1| protein disulfide-isomerase A5 precursor [Homo ... 56 5e-08
Alignment gi|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo ... 55 8e-08
Alignment gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform... 54 3e-07
Alignment gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof... 54 3e-07
Alignment gi|NP_001139021.1| thioredoxin domain-containing protein 5 isof... 53 4e-07
>ref|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapiens].
Length = 166
Score = 296 bits (757), Expect = 3e-80
Identities = 146/166 (87%), Positives = 154/166 (92%)
Frame = +1
Query: 82 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
MAQRLLLRRFLASV+SRKPS +W PL SRALQTPQ S LT TP+ AR++YTTR+ T
Sbjct: 1 MAQRLLLRRFLASVISRKPSQGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLT 60
Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
HTDLAIEYEVSAVPTVLA+KNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
>ref|NP_003320.2| thioredoxin [Homo sapiens].
Length = 105
Score = 68.2 bits (165), Expect = 1e-11
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
VVVDF A WCGPCK++ P + ++++ V+ +VD+DD D+A E EV +PT K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 502 NGDVVDKFVGIKDEDQLEAFLKKLI 576
G V +F G ++++LEA + +L+
Sbjct: 82 KGQKVGEFSG-ANKEKLEATINELV 105
>ref|NP_000909.2| protein disulfide-isomerase precursor [Homo sapiens].
Length = 508
Score = 63.9 bits (154), Expect = 2e-10
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
++V+F+A WCG CK L P K K + ++ +AKVD + +DLA +Y V PT+
Sbjct: 44 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 103
Query: 493 AIKNGDVVD--KFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
+NGD ++ ++ D + +LKK G A PD
Sbjct: 104 FFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPD 142
>ref|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo sapiens].
Length = 645
Score = 60.8 bits (146), Expect = 2e-09
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN ++V+F+A WCG CK L P EK ++K+ + +AKVD TDLA +
Sbjct: 188 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 247
Query: 466 EVSAVPTVLAIKNGDVVD 519
+VS PT+ + G D
Sbjct: 248 DVSGYPTLKIFRKGRPYD 265
Score = 56.2 bits (134), Expect = 5e-08
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEY 465
D V + V+++F+A WCG CK P EK ++ + + +AK+D + LA +
Sbjct: 73 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRF 132
Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
+VS PT+ +K G VD + G + ++++ A ++++
Sbjct: 133 DVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREV 167
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +1
Query: 280 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGK--VVMAKVDIDDHTDL 453
G F V++ + V+++F+A WCG CK L P + K G+ +V+AK+D +
Sbjct: 532 GKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVP 591
Query: 454 AIEYEVSAVPTVLAIKNGDVVD--KFV-GIKDEDQLEAFLKK 570
+ Y+V PT+ +GD + KF G +D + L F+++
Sbjct: 592 SDRYKVEGFPTIYFAPSGDKKNPVKFEGGDRDLEHLSKFIEE 633
>ref|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo sapiens].
Length = 505
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
+F+ R+ ++ + ++V+F A WCG CK L P E + G V +AKVD +T+
Sbjct: 34 NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
+Y VS PT+ ++G+ + G + D + + LKK G
Sbjct: 94 KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133
>ref|NP_006801.1| protein disulfide-isomerase A5 precursor [Homo sapiens].
Length = 519
Score = 56.2 bits (134), Expect = 5e-08
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
D+ V + V+V FHA WCG CK + P EK HG+ V+A VD + LA
Sbjct: 287 DQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAER 346
Query: 463 YEVSAVPTVLAIKNGD 510
+ +S PT+ KNG+
Sbjct: 347 FHISEFPTLKYFKNGE 362
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDI--DDHTDLAI 459
DF+ + E P+++ F+A WC CK + P +K + G V+A +++ + ++
Sbjct: 161 DFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKE 220
Query: 460 EYEVSAVPTVLAIKNGDVVDKF--VGIKDEDQLEAFLKKLIG*QAGKSPDCPGLPWS 624
EY V PT+ + G + ++ G ED +E +LK P P PW+
Sbjct: 221 EYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVE-WLKN----PQPPQPQVPETPWA 272
>ref|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo sapiens].
Length = 525
Score = 55.5 bits (132), Expect = 8e-08
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
++V+F+A WCG C+ L P K V+A + V +AKVD +LA E+ V+ PT+
Sbjct: 62 LLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFGVTEYPTLK 121
Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
+NG+ +++ G +D + + +L++ +G A + D
Sbjct: 122 FFRNGNRTHPEEYTGPRDAEGIAEWLRRRVGPSAMRLED 160
>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 486
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/87 (36%), Positives = 45/87 (51%)
Frame = +1
Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
E V VDF A WCGPC+ + P + K H VV +VD D+ ++ E + VPT
Sbjct: 401 ERLVAVDFSATWCGPCRTIRPFFHALSVK-HEDVVFLEVDADNCEEVVRECAIMCVPTFQ 459
Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
K + VD+ G E +LEA + +L
Sbjct: 460 FYKKEEKVDELCGALKE-KLEAVIAEL 485
>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 553
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/87 (36%), Positives = 45/87 (51%)
Frame = +1
Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
E V VDF A WCGPC+ + P + K H VV +VD D+ ++ E + VPT
Sbjct: 468 ERLVAVDFSATWCGPCRTIRPFFHALSVK-HEDVVFLEVDADNCEEVVRECAIMCVPTFQ 526
Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
K + VD+ G E +LEA + +L
Sbjct: 527 FYKKEEKVDELCGALKE-KLEAVIAEL 552
>ref|NP_001139021.1| thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens].
Length = 324
Score = 53.1 bits (126), Expect = 4e-07
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
+ F A WCG CK L P E++ + +H + V + KVD H +L +V PT+L +
Sbjct: 102 IKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFR 161
Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
+G VD++ G +D + L +++
Sbjct: 162 DGKKVDQYKGKRDLESLREYVE 183
Score = 52.8 bits (125), Expect = 5e-07
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +1
Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
+F D + T + F+A WCG CK L P E++ K+ V +A+VD ++
Sbjct: 223 NFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNIC 280
Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
+Y V PT+L + G V + G +D D L F+
Sbjct: 281 SKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,791,940
Number of extensions: 1357371
Number of successful extensions: 6779
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6700
Number of HSP's successfully gapped: 20
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064297.1| thioredoxin, mitochondrial precursor [Mus muscu... 285 3e-77
Alignment gi|NP_035790.1| thioredoxin [Mus musculus]. 64 2e-10
Alignment gi|NP_035162.1| protein disulfide-isomerase precursor [Mus musc... 64 2e-10
Alignment gi|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus]. 62 8e-10
Alignment gi|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus m... 61 2e-09
Alignment gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof... 57 2e-08
Alignment gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform... 57 2e-08
Alignment gi|NP_001074539.1| protein disulfide-isomerase A2 [Mus musculus]. 55 9e-08
Alignment gi|NP_082571.1| protein disulfide-isomerase A5 precursor [Mus m... 55 1e-07
Alignment gi|NP_663342.3| thioredoxin domain-containing protein 5 precurs... 55 1e-07
>ref|NP_064297.1| thioredoxin, mitochondrial precursor [Mus musculus].
Length = 166
Score = 285 bits (730), Expect = 3e-77
Identities = 141/166 (84%), Positives = 149/166 (89%)
Frame = +1
Query: 82 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
MAQRLLL RFL SV+SRKP WA L S+ LQTPQ + LT PS AR+++TTRVC T
Sbjct: 1 MAQRLLLGRFLTSVISRKPPQGVWASLTSKTLQTPQYNAGGLTVMPSPARTVHTTRVCLT 60
Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
TFN+QDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61 TFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
>ref|NP_035790.1| thioredoxin [Mus musculus].
Length = 105
Score = 63.9 bits (154), Expect = 2e-10
Identities = 34/79 (43%), Positives = 48/79 (60%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
VVVDF A WCGPCK++ P + K + VV +VD+DD D+A + EV +PT K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLCDK-YSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYK 81
Query: 502 NGDVVDKFVGIKDEDQLEA 558
G V +F G ++++LEA
Sbjct: 82 KGQKVGEFSG-ANKEKLEA 99
>ref|NP_035162.1| protein disulfide-isomerase precursor [Mus musculus].
Length = 509
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
++V+F+A WCG CK L P K AK + ++ +AKVD + +DLA +Y V PT+
Sbjct: 46 LLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 105
Query: 493 AIKNGDVVD--KFVGIKDEDQLEAFLKKLIG 579
KNGD ++ ++ D + +LKK G
Sbjct: 106 FFKNGDTASPKEYTAGREADDIVNWLKKRTG 136
>ref|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus].
Length = 641
Score = 62.0 bits (149), Expect = 8e-10
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN+ ++V+F+A WCG CK L P EK ++K+ + +AKVD + TDLA +
Sbjct: 184 DDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRF 243
Query: 466 EVSAVPTVLAIKNGDVVD 519
+VS PT+ + G D
Sbjct: 244 DVSGYPTLKIFRKGRPFD 261
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Frame = +1
Query: 271 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDD 441
+ DG +F + V + +T V+++F+A WCG CK P EK+ + + +AK+D
Sbjct: 63 LNDG-NFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS 120
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
+ LA +++VS PT+ +K G VD + G + ++++ A ++++
Sbjct: 121 ASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREV 163
>ref|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus musculus].
Length = 505
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
+F+ RV ++ + ++V+F A WCG CK L P E + G V +AKVD +T+
Sbjct: 34 NFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
+Y VS PT+ ++G+ + G + D + + LKK G
Sbjct: 94 KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133
>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
Length = 550
Score = 57.0 bits (136), Expect = 2e-08
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = +1
Query: 187 QLSLSNLTGTPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNS-ETPVVVDFHAQWCGPCK 363
QLS S L G ++ +L V I+D +F++ + ++ E V VDF A WCGPC+
Sbjct: 426 QLSESKLLGLGAEIETLEEGLVRV----IKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCR 481
Query: 364 ILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVG 531
++ P + K H V+ +VD +D L + E+ +PT KN + V +F G
Sbjct: 482 MMKPLFHSLSLK-HEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSG 536
>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
Length = 543
Score = 57.0 bits (136), Expect = 2e-08
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = +1
Query: 187 QLSLSNLTGTPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNS-ETPVVVDFHAQWCGPCK 363
QLS S L G ++ +L V I+D +F++ + ++ E V VDF A WCGPC+
Sbjct: 419 QLSESKLLGLGAEIETLEEGLVRV----IKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCR 474
Query: 364 ILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVG 531
++ P + K H V+ +VD +D L + E+ +PT KN + V +F G
Sbjct: 475 MMKPLFHSLSLK-HEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSG 529
>ref|NP_001074539.1| protein disulfide-isomerase A2 [Mus musculus].
Length = 527
Score = 55.1 bits (131), Expect = 9e-08
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Frame = +1
Query: 304 VNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVS 474
+ + ++V+F+A WCG CK L P K ++A + V +AKVD +L E+EV
Sbjct: 59 LQEHSALMVEFYAPWCGHCKELAPEYSKAAALLAAESAVVTLAKVDGPAEPELTKEFEVV 118
Query: 475 AVPTVLAIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPDCPGL 615
PT+ +NG+ +++ G K + + +L++ +G A D G+
Sbjct: 119 GYPTLKFFQNGNRTNPEEYAGPKTAEGIAEWLRRRVGPSATHLEDEEGV 167
>ref|NP_082571.1| protein disulfide-isomerase A5 precursor [Mus musculus].
Length = 517
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
D+ V + V+V FHA WCG CK + P E HG V+A VD + LA
Sbjct: 285 DQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGR 344
Query: 463 YEVSAVPTVLAIKNGD 510
+ +SA PT+ KNG+
Sbjct: 345 FHISAFPTLKYFKNGE 360
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 268 NIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDI--DD 441
+I DF+ + E P+++ F+A WC CK + P +K + G +V+A +++ +
Sbjct: 153 HIDSEKDFRRLLKREEKPLLMMFYAPWCSMCKRIMPHFQKAATQVRGHIVLAGMNVYPSE 212
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKF--VGIKDEDQLEAFLKKLIG*QAGKSPDCPGL 615
++ EY V PT+ + G + + G ED +E +LK + Q P P
Sbjct: 213 FENIKEEYNVRGYPTICYFEKGRFLFPYENYGSTAEDIVE-WLKNPLPPQ----PQVPET 267
Query: 616 PWS 624
PW+
Sbjct: 268 PWA 270
>ref|NP_663342.3| thioredoxin domain-containing protein 5 precursor [Mus musculus].
Length = 417
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Frame = +1
Query: 289 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLAI 459
F+D + T V F+A WCG CK L P E++ K+ V +A+VD ++
Sbjct: 317 FEDTIAQGIT--FVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCS 374
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
+Y V PT+L + G+ V + G +D D L +F+
Sbjct: 375 KYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFV 409
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
+ F A WCG CK L P E++ + +H + V + KVD H + E++V PT+L +
Sbjct: 196 IKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFR 255
Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
+G VD++ G +D + L +++
Sbjct: 256 DGKKVDQYKGKRDLESLRDYVQ 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,470,460
Number of extensions: 1116513
Number of successful extensions: 5497
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5423
Number of HSP's successfully gapped: 20
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa]. 332 2e-91
Alignment gi|NP_999478.1| thioredoxin [Sus scrofa]. 69 3e-12
Alignment gi|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-li... 61 1e-09
Alignment gi|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa]. 60 2e-09
Alignment gi|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus... 57 1e-08
Alignment gi|XP_003132681.2| PREDICTED: protein disulfide-isomerase A5-li... 57 2e-08
Alignment gi|XP_003356566.1| PREDICTED: thioredoxin domain-containing pro... 54 1e-07
Alignment gi|XP_003128223.2| PREDICTED: thioredoxin domain-containing pro... 54 1e-07
Alignment gi|NP_001131101.1| endoplasmic reticulum resident protein 44 [S... 52 6e-07
Alignment gi|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 1... 51 1e-06
>ref|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa].
Length = 166
Score = 332 bits (851), Expect = 2e-91
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 82 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT
Sbjct: 1 MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 60
Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120
Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
>ref|NP_999478.1| thioredoxin [Sus scrofa].
Length = 105
Score = 69.3 bits (168), Expect = 3e-12
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +1
Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
E VVVDF A WCGPCK++ P + ++++ VV +VD+DD D+A E EV +PT
Sbjct: 20 EKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
K G V +F G ++++LEA + +LI
Sbjct: 79 FFKKGQKVGEFSG-ANKEKLEATINELI 105
>ref|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa].
Length = 646
Score = 60.8 bits (146), Expect = 1e-09
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
D V + V+++F+A WCG CK P EK+ + + + +AK+D ++LA +
Sbjct: 74 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIATTLKENDPPIPVAKIDATSESELASRF 133
Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
+VS PT+ +K G VD + G + ++++ A +K++
Sbjct: 134 DVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVKEI 168
Score = 60.5 bits (145), Expect = 2e-09
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLE---KVVAKQHGKVVMAKVDIDDHTDLAIEY 465
D VVN ++V+F+A WCG CK L P E K ++K+ + +AKVD TDLA +
Sbjct: 189 DEVVNDADIILVEFYAPWCGHCKKLAPEYERAAKELSKRSPPIPLAKVDATAETDLAKRF 248
Query: 466 EVSAVPTVLAIKNGDVVD 519
+VS PT+ + G D
Sbjct: 249 DVSGYPTLKIFRKGKPFD 266
Score = 48.1 bits (113), Expect = 8e-06
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = +1
Query: 280 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQ--HGKVVMAKVDIDDHTDL 453
G F V++ + V+++F+A WCG CK L P + K H +V+AK+D +
Sbjct: 533 GKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGHKNLVIAKMDATSNDIT 592
Query: 454 AIEYEVSAVPTVLAIKNGDVVD--KFV-GIKDEDQLEAFLK 567
Y+V PT+ +GD + KF G +D + L F++
Sbjct: 593 NDRYKVEGFPTIYFAPSGDKKNPIKFEDGNRDLEHLSKFIE 633
>ref|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa].
Length = 505
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
+F+ R+ ++ + ++V+F A WCG CK L P E + G V +AKVD +T+
Sbjct: 34 NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93
Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
+Y VS PT+ ++G+ + G + D + + LKK G
Sbjct: 94 KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133
>ref|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus scrofa].
Length = 118
Score = 57.4 bits (137), Expect = 1e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +1
Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
VVV+F A WCGPCK + P L ++ Q+ V+ A VD+D +LA Y ++A+PT K
Sbjct: 23 VVVEFSATWCGPCKRIYP-LFHAMSLQYRNVMFASVDVDSARELARTYHINAIPTFQMFK 81
Query: 502 NGDVVDKFVGIK 537
V+ F IK
Sbjct: 82 QTQKVNLFSRIK 93
>ref|XP_003132681.2| PREDICTED: protein disulfide-isomerase A5-like isoform 2 [Sus
scrofa].
Length = 312
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
D+ V + V+V FHA WCG CK + P E HG+ V+A VD H LA
Sbjct: 80 DQFVKEHSSVLVMFHAPWCGHCKKMKPEFENAAEVLHGEADSSGVLAAVDATVHKALAER 139
Query: 463 YEVSAVPTVLAIKNGD 510
+ +S PT+ KNG+
Sbjct: 140 FHISEFPTLKYFKNGE 155
>ref|XP_003356566.1| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
scrofa].
Length = 204
Score = 54.3 bits (129), Expect = 1e-07
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +1
Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
+F D V T + F+A WCG CK L P E++ K+ V +A+VD DL
Sbjct: 103 NFDDTVAEGVT--FIKFYAPWCGHCKNLAPIWEQLSRKEFPGLAGVKIAEVDCTAERDLC 160
Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
+Y V PT+L + G V + G +D D L F+
Sbjct: 161 SKYSVRGYPTLLLFRGGKKVGEHSGGRDLDSLHRFV 196
>ref|XP_003128223.2| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
scrofa].
Length = 315
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
+ F A WCG CK L P E++ + +H V + KVD H +L +V PT+L +
Sbjct: 97 IKFFAPWCGHCKALAPTWEQLALGLEHSATVKIGKVDCTQHYELCSGNQVRGYPTLLWFR 156
Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
+G VD++ G +D D L +++
Sbjct: 157 DGKKVDQYKGKRDLDSLREYVQ 178
>ref|NP_001131101.1| endoplasmic reticulum resident protein 44 [Sus scrofa].
Length = 406
Score = 52.0 bits (123), Expect = 6e-07
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQH---GKVVMAKVDIDDHTDLA 456
D ++N+ +V+F+A WC ++L P E+ V+ +++ +VV A+VD D H+D+A
Sbjct: 40 DDILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIA 99
Query: 457 IEYEVSAVPTVLAIKNG 507
Y +S PT+ +NG
Sbjct: 100 QRYRISKYPTLKLFRNG 116
>ref|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 10, partial [Sus
scrofa].
Length = 653
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/95 (28%), Positives = 47/95 (49%)
Frame = +1
Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
Q+ + + P +VDF A WC PC+ L P L K +G++ +D H L Y +
Sbjct: 321 QNFPTSDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTVHEGLCNMYNI 380
Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
A PT + + N + ++ G +Q+ F++ L+
Sbjct: 381 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 414
Score = 49.7 bits (117), Expect = 3e-06
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
R Y+ R+ F Q D F ++V+ ++ VVDF+A WCGPC+ P E +
Sbjct: 515 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKSHWVVDFYAPWCGPCQNFAPEFELLA 574
Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
KV KVD + + + A PTV
Sbjct: 575 RMVKEKVKAGKVDCQAYAQTCQKAGIRAYPTV 606
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,267,834
Number of extensions: 910332
Number of successful extensions: 4718
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4673
Number of HSP's successfully gapped: 17
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007529
(1071 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1053 0.0
Sscrofa_Chr04 327 7e-87
Sscrofa_Chr15 68 1e-08
>Sscrofa_Chr05
|| Length = 111506441
Score = 1053 bits (531), Expect = 0.0
Identities = 572/586 (97%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 467 aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009685 aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 9009744
Query: 527 tgggcatcaaggatgaggaccagctggaggcctttctgaagaagctgattggctgacaag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009745 tgggcatcaaggatgaggaccagctggaggcctttctgaagaagctgattggctgacaag 9009804
Query: 587 cagggaagagtcctgactgccccggcctgccatggtcccgggggaccccgtagaactcac 646
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 9009805 cagggaagagtcctgactgccccggcctgccatggtcccagggaaccccgtagaactcac 9009864
Query: 647 agcccttctgtgccagcccttcccgcctcgtccctctgactggcccccatgggcccgtgc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009865 agcccttctgtgccagcccttcccgcctcgtccctctgactggcccccatgggcccgtgc 9009924
Query: 707 tttggagaccaggcctccaaacacgggaccctcaagcgctcccagcctggctagctgcca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009925 tttggagaccaggcctccaaacacgggaccctcaagcgctcccagcctggctagctgcca 9009984
Query: 767 ggctggccgccccaggagccaggacagccgtcttcccacccgctctgctccctccaggat 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009985 ggctggccgccccaggagccaggacagccgtcttcccacccgctctgctccctccaggat 9010044
Query: 827 gcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccctgatccc 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010045 gcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccctgatccc 9010104
Query: 887 ttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcctgctgct 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010105 ttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcctgctgct 9010164
Query: 947 gttttgt-nnnnnnnnngaaggaaactagaaacccgaacaagtgagagtaacatacagtt 1005
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010165 gttttgtaaaaaagaaagaaggaaactagaaacccgaacaagtgagagtaacatacagtt 9010224
Query: 1006 ctctcattttgtgcaggtccttaataaggaac-tttgtgatccctc 1050
||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 9010225 ctctcattttgtgcaggtccttaataaagaacttttgtgatccctc 9010270
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Plus
Query: 80 agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998033 agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 8998092
Query: 140 ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998093 ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 8998152
Query: 200 gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998153 gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 8998212
Query: 260 caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998213 caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 8998272
Query: 320 cagtggttgtggatttccatgcacagtg 347
||||||||||||||||||||||||||||
Sbjct: 8998273 cagtggttgtggatttccatgcacagtg 8998300
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 345 gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001237 gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 9001296
Query: 405 tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001297 tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 9001356
Query: 465 cgaggt 470
||||||
Sbjct: 9001357 cgaggt 9001362
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ccctcaggaagtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997177 ccctcaggaagtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcg 8997236
Query: 61 cttcgctctcgttgctgggag 81
|||||||||||||||||||||
Sbjct: 8997237 cttcgctctcgttgctgggag 8997257
>Sscrofa_Chr04
|| Length = 143465943
Score = 327 bits (165), Expect = 7e-87
Identities = 437/524 (83%), Gaps = 9/524 (1%)
Strand = Plus / Minus
Query: 48 gtgctgtgcgtcgcttcgctctcgttgctgggagatggctcagcgtcttctcctgaggag 107
||||||||| || || |||||| ||| |||| ||||||||| | ||||||||||||||
Sbjct: 99319556 gtgctgtgcatccctctgctctcactgcagggaaatggctcagtgacttctcctgaggag 99319497
Query: 108 gttcctggcctctgtagtctccaggaagccctctcatagtcggtgggcacccctcgcttc 167
|||||||| |||||| |||| |||||| ||||| |||||||||||||||| ||| ||
Sbjct: 99319496 gttcctggggtctgtaatctctgagaagccatctcagagtcggtgggcaccccacgcctc 99319437
Query: 168 cagagccctgcagaccccacagctcagccttagtaacctgacaggaacacccagccaagc 227
||| |||||||||||||||||||||| | |||||||||||||| || | ||| |||||
Sbjct: 99319436 cagggccctgcagaccccacagctcatcactagtaacctgacagtaatatccaatcaagc 99319377
Query: 228 ccggtcattatacact-acccgggtctgtacaacaacctttaacatccaggatggacctg 286
| ||||| ||| |||| ||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 99319376 ctggtcaatattcactcaccagagtctgtacaatgatctttaacatccaggatggacctg 99319317
Query: 287 actttcaagaccgagttgtcaacagtgagacgccagtggttgtggatttccatgcacagt 346
|||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 99319316 actttcgagaccgagtggacaacagtgaga-tacaggggttgtggatttccatgcacagt 99319258
Query: 347 ggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagcatg 406
||||||| |||| |||| ||||||||||||||| ||||||||||||||| | |||||
Sbjct: 99319257 ggtgtgggccctataagaccctggggccaaggttgcagaaggtggtggccatgtagcata 99319198
Query: 407 gaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagtacg 466
||||| | | ||||||||||||||| || |||| ||||| |||| || | ||| | |
Sbjct: 99319197 gaaagacagccaaggccaaggtggatattgatgaccccacagccctcaccctggagcatg 99319138
Query: 467 aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 526
| || || ||| || ||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 99319137 a----tcagcagtgacccctgtgctggccatcagaaatggggac---gtggaaaagtttg 99319085
Query: 527 tgggcatcaaggatgaggaccagctggaggcctttctgaagaag 570
|||||||| ||||| |||||||||||||| | |||||||||||
Sbjct: 99319084 tgggcatccaggataaggaccagctggagacacttctgaagaag 99319041
Score = 99.6 bits (50), Expect = 3e-18
Identities = 114/134 (85%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 820 ccaggatgcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccc 879
|||||||||||||||||||| | |||||| ||||| | | || |||||| |||||||
Sbjct: 99318434 ccaggatgcttggacagagc-gtggggcccgcctgcagcaacagcttggtttaatctccc 99318376
Query: 880 tgatcccttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcc 939
|| |||||||||||||||||| | |||||||||||||| |||||| |||||||||||
Sbjct: 99318375 tggacccttctgatctgaaccccaggacctggctcatctgcttcctgcatttttctttcc 99318316
Query: 940 tgctgctgttttgt 953
||||||| ||||||
Sbjct: 99318315 tgctgctcttttgt 99318302
Score = 87.7 bits (44), Expect = 1e-14
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 628 gggaccccgtagaactcacagcccttctgtgccagcccttcccgcctcgtccctctgact 687
|||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 99318717 gggaccccatagaactcacagcccttctgtgccagcccttcctacctcttcactctgact 99318658
Query: 688 ggcc 691
||||
Sbjct: 99318657 ggcc 99318654
>Sscrofa_Chr15
|| Length = 157681621
Score = 67.9 bits (34), Expect = 1e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 681 tctgactggcccccatgggcccgtgctttggagaccaggcctccaaacacgggaccctca 740
|||| |||||||| |||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 157304230 tctgcctggcccctgtgggcctgtgcttaggagaccaggcctccaaacacaggagcctca 157304171
Query: 741 agcgctccca 750
| |||||||
Sbjct: 157304170 ggtgctccca 157304161
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,030,052
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 10
Length of query: 1071
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1050
Effective length of database: 2,808,413,156
Effective search space: 2948833813800
Effective search space used: 2948833813800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)