Animal-Genome cDNA 20110601C-007529


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776633.1| thioredoxin, mitochondrial precursor [Bos tauru...   304   8e-83
Alignment   gi|NP_776393.1| thioredoxin [Bos taurus].                             70   4e-12
Alignment   gi|NP_776560.1| protein disulfide-isomerase precursor [Bos taur...    64   3e-10
Alignment   gi|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos t...    60   3e-09
Alignment   gi|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bo...    60   4e-09
Alignment   gi|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos...    56   6e-08
Alignment   gi|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos...    55   1e-07
Alignment   gi|NP_001092331.1| protein disulfide-isomerase A2 [Bos taurus].       54   2e-07
Alignment   gi|XP_002698560.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C...    53   4e-07
Alignment   gi|XP_590020.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, m...    53   4e-07

>ref|NP_776633.1| thioredoxin, mitochondrial precursor [Bos taurus].
          Length = 166

 Score =  304 bits (779), Expect = 8e-83
 Identities = 150/166 (90%), Positives = 158/166 (95%)
 Frame = +1

Query: 82  MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
           MAQRLLLRRFL S++S KPS SRWAP+ASRAL+TPQ S   LT TPSQARS+YTTRVC+T
Sbjct: 1   MAQRLLLRRFLTSIISGKPSQSRWAPVASRALKTPQYSPGYLTVTPSQARSIYTTRVCST 60

Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
           TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61  TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           HTDLA+EYEVSAVPTVLA+KNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166


>ref|NP_776393.1| thioredoxin [Bos taurus].
          Length = 105

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 37/88 (42%), Positives = 55/88 (62%)
 Frame = +1

Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           E  VVVDF A WCGPCK++ P    + ++++  VV  +VD+DD  D+A E EV  +PT  
Sbjct: 20  EKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQ 78

Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
             K G  V +F G  ++++LEA + +LI
Sbjct: 79  FFKKGQKVGEFSG-ANKEKLEATINELI 105


>ref|NP_776560.1| protein disulfide-isomerase precursor [Bos taurus].
          Length = 510

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEY 465
           D  + +   ++V+F+A WCG CK L P   K   K   +  ++ +AKVD  + +DLA +Y
Sbjct: 37  DEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQY 96

Query: 466 EVSAVPTVLAIKNGDVVD--KFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
            V   PT+   KNGD     ++   ++ D +  +LKK  G  A    D
Sbjct: 97  GVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSD 144


>ref|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos taurus].
          Length = 505

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
           +F+ R+ ++ +   ++V+F A WCG CK L P  E    +  G V +AKVD   +T+   
Sbjct: 34  NFESRITDTGSSGLMLVEFFAPWCGHCKKLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           +Y VS  PT+   ++G+    + G +  D + + LKK  G
Sbjct: 94  KYGVSGYPTLKIFRDGEESGAYDGPRTADGIVSHLKKQAG 133


>ref|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bos taurus].
          Length = 643

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
           D  V  +  V+++F+A WCG CK   P  EK+ A   +    + +AK+D    + LA  +
Sbjct: 72  DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAATLKENDPPIPVAKIDATSESALASRF 131

Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
           +VS  PT+  +K G  VD + G + ++++ A +K++
Sbjct: 132 DVSGYPTIKILKKGQEVD-YEGSRTQEEIVAKVKEV 166



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN    ++V+F+A WCG CK L P  EK    ++K    + +AKVD    TDLA  +
Sbjct: 187 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDLAKRF 246

Query: 466 EVSAVPTVLAIKNG 507
           +VS+ PT+   + G
Sbjct: 247 DVSSYPTLKIFRKG 260


>ref|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos taurus].
          Length = 437

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
 Frame = +1

Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
           +F D +    T   + F+A WCG CK L P  E +  K+     +V +A+VD     +L 
Sbjct: 336 NFDDAIAEGVT--FIKFYAPWCGHCKDLAPTWEDLSKKEFPGLAEVTIAEVDCTAERNLC 393

Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
            +Y V   PT+L  + G+ V +  G +D D L  F+
Sbjct: 394 SKYSVRGYPTLLLFRGGEKVGEHSGSRDLDSLHRFV 429



 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = +1

Query: 214 TPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKV- 390
           TP   + LY         ++  G  F            + F A WCG CK L P  E++ 
Sbjct: 189 TPELKQGLYELSAGNFELHVAQGDHF------------IKFFAPWCGHCKALAPTWEQLA 236

Query: 391 VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLK 567
           +  +H + V + KVD   H +L    +V   PT+L  ++G  VD++ G +D D L  +++
Sbjct: 237 LGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLDSLREYVQ 296


>ref|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos taurus].
          Length = 105

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           VV++F A+WCGPCK + P +   ++ Q+  V+ A VD+D+  +LA  Y + AVPT    K
Sbjct: 23  VVIEFSAKWCGPCKRIYP-VFHAMSVQYRSVMFANVDVDNARELAQTYHIKAVPTFQLFK 81

Query: 502 NGDVVDKFVGI---KDEDQLEAFL 564
               + +  G    K E+++  F+
Sbjct: 82  QTKKIFELCGADAKKLEEKIREFM 105


>ref|NP_001092331.1| protein disulfide-isomerase A2 [Bos taurus].
          Length = 489

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           ++V+F+A WCG C+ L P   K   ++A +  +V +AKVD     +LA E+ V+  PT+ 
Sbjct: 71  LLVEFYAPWCGHCRALAPEYSKAAALLAAESARVTLAKVDGPAEPELAEEFAVTEYPTLK 130

Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
             + G+    +++ G ++ + +  +L++ +G  A +  D
Sbjct: 131 FFREGNRTHPEEYTGPREAEGIAEWLRRRVGPSARQLED 169


>ref|XP_002698560.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 10-like [Bos
           taurus].
          Length = 793

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/95 (29%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   N + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 461 QNFPANEKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 520

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   + ++ G    +Q+  F++ L+
Sbjct: 521 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 554



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  +   VVDF+A WCGPC+   P  E + 
Sbjct: 655 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 714

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
               GKV   KVD   +     +  + A PTV
Sbjct: 715 RTLKGKVKAGKVDCQAYAQTCQKAGIRAYPTV 746


>ref|XP_590020.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 10-like
           isoform 2 [Bos taurus].
          Length = 793

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/95 (29%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   N + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 461 QNFPANEKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 520

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   + ++ G    +Q+  F++ L+
Sbjct: 521 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 554



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  +   VVDF+A WCGPC+   P  E + 
Sbjct: 655 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 714

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
               GKV   KVD   +     +  + A PTV
Sbjct: 715 RTLKGKVKAGKVDCQAYAQTCQKAGIRAYPTV 746


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,047,141
Number of extensions: 1373699
Number of successful extensions: 6792
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6731
Number of HSP's successfully gapped: 23
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondria...   306   7e-85
Alignment   gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ...    69   8e-12
Alignment   gi|XP_848238.1| PREDICTED: similar to Protein disulfide-isomera...    62   9e-10
Alignment   gi|XP_539831.2| PREDICTED: similar to Protein disulfide-isomera...    62   9e-10
Alignment   gi|XP_535453.2| PREDICTED: similar to protein disulfide isomera...    60   3e-09
Alignment   gi|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, bet...    60   3e-09
Alignment   gi|XP_547674.2| PREDICTED: similar to Thioredoxin domain contai...    54   2e-07
Alignment   gi|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    54   3e-07
Alignment   gi|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    54   3e-07
Alignment   gi|XP_862695.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    54   3e-07

>ref|XP_531748.2| PREDICTED: similar to Thioredoxin, mitochondrial precursor (Mt-Trx)
           (MTRX) (Thioredoxin-2) [Canis familiaris].
          Length = 250

 Score =  306 bits (784), Expect(2) = 7e-85
 Identities = 156/180 (86%), Positives = 161/180 (89%)
 Frame = +1

Query: 40  GGPCCASLRSRCWEMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTP 219
           G    ASLRS C EMAQRLLLRRFLASV+SRKP   RWAPL  RAL     S  +LT TP
Sbjct: 74  GRAVSASLRSGCREMAQRLLLRRFLASVISRKPPQGRWAPLTCRALPC---SPGHLTATP 130

Query: 220 SQARSLYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 399
           +QARS+YTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK
Sbjct: 131 TQARSIYTTRVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAK 190

Query: 400 QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           QHGKVVMAKVDIDDHTDLA+EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 191 QHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 250



 Score = 27.3 bits (59), Expect(2) = 7e-85
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +2

Query: 2   PQEVTTEVPLTGGAGRAV 55
           P EVT  V LTGG GRAV
Sbjct: 60  PPEVTKGVSLTGGEGRAV 77


>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
           (Surface associated sulphydryl protein) (SASP) [Canis
           familiaris].
          Length = 219

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 36/85 (42%), Positives = 54/85 (63%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           VVVDF A WCGPCK++ P    + ++++  VV  +VD+DD  D+A E EV  +PT    K
Sbjct: 137 VVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFK 195

Query: 502 NGDVVDKFVGIKDEDQLEAFLKKLI 576
            G  V +F G  ++++LEA + +LI
Sbjct: 196 KGQKVGEFSG-ANKEKLEATINELI 219


>ref|XP_848238.1| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
           (Protein ERp-72) (ERp72) isoform 3 [Canis familiaris].
          Length = 643

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN    ++V+F+A WCG CK L P  EK    ++K+   + +AKVD    TDLA  +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244

Query: 466 EVSAVPTVLAIKNGDVVD 519
           EVS+ PT+   + G   D
Sbjct: 245 EVSSYPTLKIFRKGKPFD 262



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
           D  V  +  V+++F+A WCG CK   P  EK+ +   +    + +AK+D    + LA  +
Sbjct: 70  DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSESALAGRF 129

Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
            VS  PT+  +K G+ VD + G + ++++ A +K++
Sbjct: 130 GVSGYPTIKILKKGEAVD-YEGSRTQEEIVAKVKEV 164


>ref|XP_539831.2| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
           (Protein ERp-72) (ERp72) isoform 1 [Canis familiaris].
          Length = 628

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN    ++V+F+A WCG CK L P  EK    ++K+   + +AKVD    TDLA  +
Sbjct: 185 DDVVNGADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 244

Query: 466 EVSAVPTVLAIKNGDVVD 519
           EVS+ PT+   + G   D
Sbjct: 245 EVSSYPTLKIFRKGKPFD 262



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDDHTDLAIEY 465
           D  V  +  V+++F+A WCG CK   P  EK+ +   +    + +AK+D    + LA  +
Sbjct: 70  DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSESALAGRF 129

Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
            VS  PT+  +K G+ VD + G + ++++ A +K++
Sbjct: 130 GVSGYPTIKILKKGEAVD-YEGSRTQEEIVAKVKEV 164


>ref|XP_535453.2| PREDICTED: similar to protein disulfide isomerase-associated 3
           precursor [Canis familiaris].
          Length = 687

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
           +F+ R+ ++ +   ++V+F A WCG CK L P  E    +  G V +AKVD   +T+   
Sbjct: 216 NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 275

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           +Y VS  PT+   ++G+    + G +  D + + LKK  G
Sbjct: 276 KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 315


>ref|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, beta subunit [Canis
           familiaris].
          Length = 510

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           ++V+F+A WCG CK L P   K       +  ++ +AKVD  + +DLA +Y V   PT+ 
Sbjct: 46  LLVEFYAPWCGHCKALAPEYAKAAGTLKAEGSEIRLAKVDATEESDLAHQYGVRGYPTIK 105

Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
             KNGD     ++   ++ + +  +LKK  G  A   PD
Sbjct: 106 FFKNGDTAAPREYTAGREAEDIVNWLKKRTGPAATTLPD 144


>ref|XP_547674.2| PREDICTED: similar to Thioredoxin domain containing protein 2
           (Spermatid-specific thioredoxin-1) (Sptrx-1) [Canis
           familiaris].
          Length = 468

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 31/87 (35%), Positives = 49/87 (56%)
 Frame = +1

Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           E  V VDF A WCGPC+ + P L + ++ ++  VV  +VD D+  +L  + E+  +PT  
Sbjct: 383 ERLVAVDFSATWCGPCRTIKP-LFRSLSLKYEDVVFLEVDADECEELVKDLEIICIPTFQ 441

Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
             K  + V +F G   E +LEA + +L
Sbjct: 442 FYKQEEKVGEFCGAVKE-KLEAIIAEL 467


>ref|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
           isoform 1 [Canis familiaris].
          Length = 794

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   N + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 462 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 521

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   V ++ G    +Q+  F++ L+
Sbjct: 522 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 555



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  +   VVDF+A WCGPC+   P  E + 
Sbjct: 656 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 715

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
               GKV   KVD   +     +  + A PTV
Sbjct: 716 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 747


>ref|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
           isoform 6 [Canis familiaris].
          Length = 748

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   N + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 416 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 475

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   V ++ G    +Q+  F++ L+
Sbjct: 476 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 509



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  +   VVDF+A WCGPC+   P  E + 
Sbjct: 610 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 669

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
               GKV   KVD   +     +  + A PTV
Sbjct: 670 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 701


>ref|XP_862695.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
           isoform 3 [Canis familiaris].
          Length = 794

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   N + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 462 QNFPANDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTIHEGLCNMYNI 521

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   V ++ G    +Q+  F++ L+
Sbjct: 522 QAYPTTV-VFNQSNVHEYEGHHSAEQILEFIEDLM 555



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  +   VVDF+A WCGPC+   P  E + 
Sbjct: 656 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLA 715

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
               GKV   KVD   +     +  + A PTV
Sbjct: 716 RMIKGKVKAGKVDCQAYGQTCQKAGIRAYPTV 747


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,826,640
Number of extensions: 1401942
Number of successful extensions: 7212
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7122
Number of HSP's successfully gapped: 23
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapi...   296   3e-80
Alignment   gi|NP_003320.2| thioredoxin [Homo sapiens].                           68   1e-11
Alignment   gi|NP_000909.2| protein disulfide-isomerase precursor [Homo sap...    64   2e-10
Alignment   gi|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo ...    61   2e-09
Alignment   gi|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo ...    60   3e-09
Alignment   gi|NP_006801.1| protein disulfide-isomerase A5 precursor [Homo ...    56   5e-08
Alignment   gi|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo ...    55   8e-08
Alignment   gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform...    54   3e-07
Alignment   gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof...    54   3e-07
Alignment   gi|NP_001139021.1| thioredoxin domain-containing protein 5 isof...    53   4e-07

>ref|NP_036605.2| thioredoxin, mitochondrial precursor [Homo sapiens].
          Length = 166

 Score =  296 bits (757), Expect = 3e-80
 Identities = 146/166 (87%), Positives = 154/166 (92%)
 Frame = +1

Query: 82  MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
           MAQRLLLRRFLASV+SRKPS  +W PL SRALQTPQ S   LT TP+ AR++YTTR+  T
Sbjct: 1   MAQRLLLRRFLASVISRKPSQGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLT 60

Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
           TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61  TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           HTDLAIEYEVSAVPTVLA+KNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166


>ref|NP_003320.2| thioredoxin [Homo sapiens].
          Length = 105

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           VVVDF A WCGPCK++ P    + ++++  V+  +VD+DD  D+A E EV  +PT    K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81

Query: 502 NGDVVDKFVGIKDEDQLEAFLKKLI 576
            G  V +F G  ++++LEA + +L+
Sbjct: 82  KGQKVGEFSG-ANKEKLEATINELV 105


>ref|NP_000909.2| protein disulfide-isomerase precursor [Homo sapiens].
          Length = 508

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           ++V+F+A WCG CK L P   K   K   +  ++ +AKVD  + +DLA +Y V   PT+ 
Sbjct: 44  LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 103

Query: 493 AIKNGDVVD--KFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
             +NGD     ++   ++ D +  +LKK  G  A   PD
Sbjct: 104 FFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPD 142


>ref|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo sapiens].
          Length = 645

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN    ++V+F+A WCG CK L P  EK    ++K+   + +AKVD    TDLA  +
Sbjct: 188 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 247

Query: 466 EVSAVPTVLAIKNGDVVD 519
           +VS  PT+   + G   D
Sbjct: 248 DVSGYPTLKIFRKGRPYD 265



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEY 465
           D  V  +  V+++F+A WCG CK   P  EK   ++  +   + +AK+D    + LA  +
Sbjct: 73  DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRF 132

Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
           +VS  PT+  +K G  VD + G + ++++ A ++++
Sbjct: 133 DVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREV 167



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
 Frame = +1

Query: 280 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGK--VVMAKVDIDDHTDL 453
           G  F   V++ +  V+++F+A WCG CK L P    +  K  G+  +V+AK+D   +   
Sbjct: 532 GKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVP 591

Query: 454 AIEYEVSAVPTVLAIKNGDVVD--KFV-GIKDEDQLEAFLKK 570
           +  Y+V   PT+    +GD  +  KF  G +D + L  F+++
Sbjct: 592 SDRYKVEGFPTIYFAPSGDKKNPVKFEGGDRDLEHLSKFIEE 633


>ref|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo sapiens].
          Length = 505

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
           +F+ R+ ++ +   ++V+F A WCG CK L P  E    +  G V +AKVD   +T+   
Sbjct: 34  NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           +Y VS  PT+   ++G+    + G +  D + + LKK  G
Sbjct: 94  KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133


>ref|NP_006801.1| protein disulfide-isomerase A5 precursor [Homo sapiens].
          Length = 519

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
           D+ V   + V+V FHA WCG CK + P  EK     HG+     V+A VD   +  LA  
Sbjct: 287 DQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAER 346

Query: 463 YEVSAVPTVLAIKNGD 510
           + +S  PT+   KNG+
Sbjct: 347 FHISEFPTLKYFKNGE 362



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
 Frame = +1

Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDI--DDHTDLAI 459
           DF+  +   E P+++ F+A WC  CK + P  +K   +  G  V+A +++   +  ++  
Sbjct: 161 DFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKE 220

Query: 460 EYEVSAVPTVLAIKNGDVVDKF--VGIKDEDQLEAFLKKLIG*QAGKSPDCPGLPWS 624
           EY V   PT+   + G  + ++   G   ED +E +LK          P  P  PW+
Sbjct: 221 EYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVE-WLKN----PQPPQPQVPETPWA 272


>ref|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo sapiens].
          Length = 525

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           ++V+F+A WCG C+ L P   K   V+A +   V +AKVD     +LA E+ V+  PT+ 
Sbjct: 62  LLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFGVTEYPTLK 121

Query: 493 AIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPD 603
             +NG+    +++ G +D + +  +L++ +G  A +  D
Sbjct: 122 FFRNGNRTHPEEYTGPRDAEGIAEWLRRRVGPSAMRLED 160


>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
          Length = 486

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 45/87 (51%)
 Frame = +1

Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           E  V VDF A WCGPC+ + P    +  K H  VV  +VD D+  ++  E  +  VPT  
Sbjct: 401 ERLVAVDFSATWCGPCRTIRPFFHALSVK-HEDVVFLEVDADNCEEVVRECAIMCVPTFQ 459

Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
             K  + VD+  G   E +LEA + +L
Sbjct: 460 FYKKEEKVDELCGALKE-KLEAVIAEL 485


>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
          Length = 553

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 45/87 (51%)
 Frame = +1

Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           E  V VDF A WCGPC+ + P    +  K H  VV  +VD D+  ++  E  +  VPT  
Sbjct: 468 ERLVAVDFSATWCGPCRTIRPFFHALSVK-HEDVVFLEVDADNCEEVVRECAIMCVPTFQ 526

Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKL 573
             K  + VD+  G   E +LEA + +L
Sbjct: 527 FYKKEEKVDELCGALKE-KLEAVIAEL 552


>ref|NP_001139021.1| thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens].
          Length = 324

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +1

Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           + F A WCG CK L P  E++ +  +H + V + KVD   H +L    +V   PT+L  +
Sbjct: 102 IKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFR 161

Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
           +G  VD++ G +D + L  +++
Sbjct: 162 DGKKVDQYKGKRDLESLREYVE 183



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
 Frame = +1

Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
           +F D +    T   + F+A WCG CK L P  E++  K+      V +A+VD     ++ 
Sbjct: 223 NFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNIC 280

Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
            +Y V   PT+L  + G  V +  G +D D L  F+
Sbjct: 281 SKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 316


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,791,940
Number of extensions: 1357371
Number of successful extensions: 6779
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6700
Number of HSP's successfully gapped: 20
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_064297.1| thioredoxin, mitochondrial precursor [Mus muscu...   285   3e-77
Alignment   gi|NP_035790.1| thioredoxin [Mus musculus].                           64   2e-10
Alignment   gi|NP_035162.1| protein disulfide-isomerase precursor [Mus musc...    64   2e-10
Alignment   gi|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus].        62   8e-10
Alignment   gi|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus m...    61   2e-09
Alignment   gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof...    57   2e-08
Alignment   gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform...    57   2e-08
Alignment   gi|NP_001074539.1| protein disulfide-isomerase A2 [Mus musculus].     55   9e-08
Alignment   gi|NP_082571.1| protein disulfide-isomerase A5 precursor [Mus m...    55   1e-07
Alignment   gi|NP_663342.3| thioredoxin domain-containing protein 5 precurs...    55   1e-07

>ref|NP_064297.1| thioredoxin, mitochondrial precursor [Mus musculus].
          Length = 166

 Score =  285 bits (730), Expect = 3e-77
 Identities = 141/166 (84%), Positives = 149/166 (89%)
 Frame = +1

Query: 82  MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
           MAQRLLL RFL SV+SRKP    WA L S+ LQTPQ +   LT  PS AR+++TTRVC T
Sbjct: 1   MAQRLLLGRFLTSVISRKPPQGVWASLTSKTLQTPQYNAGGLTVMPSPARTVHTTRVCLT 60

Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
           TFN+QDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEK+VAKQHGKVVMAKVDIDD
Sbjct: 61  TFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 120

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 166


>ref|NP_035790.1| thioredoxin [Mus musculus].
          Length = 105

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/79 (43%), Positives = 48/79 (60%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           VVVDF A WCGPCK++ P    +  K +  VV  +VD+DD  D+A + EV  +PT    K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLCDK-YSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYK 81

Query: 502 NGDVVDKFVGIKDEDQLEA 558
            G  V +F G  ++++LEA
Sbjct: 82  KGQKVGEFSG-ANKEKLEA 99


>ref|NP_035162.1| protein disulfide-isomerase precursor [Mus musculus].
          Length = 509

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           ++V+F+A WCG CK L P   K  AK   +  ++ +AKVD  + +DLA +Y V   PT+ 
Sbjct: 46  LLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 105

Query: 493 AIKNGDVVD--KFVGIKDEDQLEAFLKKLIG 579
             KNGD     ++   ++ D +  +LKK  G
Sbjct: 106 FFKNGDTASPKEYTAGREADDIVNWLKKRTG 136


>ref|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus].
          Length = 641

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN+   ++V+F+A WCG CK L P  EK    ++K+   + +AKVD  + TDLA  +
Sbjct: 184 DDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRF 243

Query: 466 EVSAVPTVLAIKNGDVVD 519
           +VS  PT+   + G   D
Sbjct: 244 DVSGYPTLKIFRKGRPFD 261



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
 Frame = +1

Query: 271 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVA---KQHGKVVMAKVDIDD 441
           + DG +F + V + +T V+++F+A WCG CK   P  EK+ +        + +AK+D   
Sbjct: 63  LNDG-NFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS 120

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
            + LA +++VS  PT+  +K G  VD + G + ++++ A ++++
Sbjct: 121 ASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREV 163


>ref|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus musculus].
          Length = 505

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
           +F+ RV ++ +   ++V+F A WCG CK L P  E    +  G V +AKVD   +T+   
Sbjct: 34  NFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           +Y VS  PT+   ++G+    + G +  D + + LKK  G
Sbjct: 94  KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133


>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
          Length = 550

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = +1

Query: 187 QLSLSNLTGTPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNS-ETPVVVDFHAQWCGPCK 363
           QLS S L G  ++  +L    V      I+D  +F++ + ++ E  V VDF A WCGPC+
Sbjct: 426 QLSESKLLGLGAEIETLEEGLVRV----IKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCR 481

Query: 364 ILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVG 531
           ++ P    +  K H  V+  +VD +D   L  + E+  +PT    KN + V +F G
Sbjct: 482 MMKPLFHSLSLK-HEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSG 536


>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
          Length = 543

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = +1

Query: 187 QLSLSNLTGTPSQARSLYTTRVCTTTFNIQDGPDFQDRVVNS-ETPVVVDFHAQWCGPCK 363
           QLS S L G  ++  +L    V      I+D  +F++ + ++ E  V VDF A WCGPC+
Sbjct: 419 QLSESKLLGLGAEIETLEEGLVRV----IKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCR 474

Query: 364 ILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVG 531
           ++ P    +  K H  V+  +VD +D   L  + E+  +PT    KN + V +F G
Sbjct: 475 MMKPLFHSLSLK-HEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSG 529


>ref|NP_001074539.1| protein disulfide-isomerase A2 [Mus musculus].
          Length = 527

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
 Frame = +1

Query: 304 VNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQHGKVVMAKVDIDDHTDLAIEYEVS 474
           +   + ++V+F+A WCG CK L P   K   ++A +   V +AKVD     +L  E+EV 
Sbjct: 59  LQEHSALMVEFYAPWCGHCKELAPEYSKAAALLAAESAVVTLAKVDGPAEPELTKEFEVV 118

Query: 475 AVPTVLAIKNGDVV--DKFVGIKDEDQLEAFLKKLIG*QAGKSPDCPGL 615
             PT+   +NG+    +++ G K  + +  +L++ +G  A    D  G+
Sbjct: 119 GYPTLKFFQNGNRTNPEEYAGPKTAEGIAEWLRRRVGPSATHLEDEEGV 167


>ref|NP_082571.1| protein disulfide-isomerase A5 precursor [Mus musculus].
          Length = 517

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
           D+ V   + V+V FHA WCG CK + P  E      HG      V+A VD   +  LA  
Sbjct: 285 DQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGR 344

Query: 463 YEVSAVPTVLAIKNGD 510
           + +SA PT+   KNG+
Sbjct: 345 FHISAFPTLKYFKNGE 360



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
 Frame = +1

Query: 268 NIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDI--DD 441
           +I    DF+  +   E P+++ F+A WC  CK + P  +K   +  G +V+A +++   +
Sbjct: 153 HIDSEKDFRRLLKREEKPLLMMFYAPWCSMCKRIMPHFQKAATQVRGHIVLAGMNVYPSE 212

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKF--VGIKDEDQLEAFLKKLIG*QAGKSPDCPGL 615
             ++  EY V   PT+   + G  +  +   G   ED +E +LK  +  Q    P  P  
Sbjct: 213 FENIKEEYNVRGYPTICYFEKGRFLFPYENYGSTAEDIVE-WLKNPLPPQ----PQVPET 267

Query: 616 PWS 624
           PW+
Sbjct: 268 PWA 270


>ref|NP_663342.3| thioredoxin domain-containing protein 5 precursor [Mus musculus].
          Length = 417

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +1

Query: 289 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLAI 459
           F+D +    T   V F+A WCG CK L P  E++  K+      V +A+VD     ++  
Sbjct: 317 FEDTIAQGIT--FVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCS 374

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
           +Y V   PT+L  + G+ V +  G +D D L +F+
Sbjct: 375 KYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFV 409



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +1

Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           + F A WCG CK L P  E++ +  +H + V + KVD   H  +  E++V   PT+L  +
Sbjct: 196 IKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFR 255

Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
           +G  VD++ G +D + L  +++
Sbjct: 256 DGKKVDQYKGKRDLESLRDYVQ 277


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,470,460
Number of extensions: 1116513
Number of successful extensions: 5497
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5423
Number of HSP's successfully gapped: 20
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa].          332   2e-91
Alignment   gi|NP_999478.1| thioredoxin [Sus scrofa].                             69   3e-12
Alignment   gi|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-li...    61   1e-09
Alignment   gi|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa].       60   2e-09
Alignment   gi|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus...    57   1e-08
Alignment   gi|XP_003132681.2| PREDICTED: protein disulfide-isomerase A5-li...    57   2e-08
Alignment   gi|XP_003356566.1| PREDICTED: thioredoxin domain-containing pro...    54   1e-07
Alignment   gi|XP_003128223.2| PREDICTED: thioredoxin domain-containing pro...    54   1e-07
Alignment   gi|NP_001131101.1| endoplasmic reticulum resident protein 44 [S...    52   6e-07
Alignment   gi|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 1...    51   1e-06

>ref|NP_001230634.1| thioredoxin, mitochondrial [Sus scrofa].
          Length = 166

 Score =  332 bits (851), Expect = 2e-91
 Identities = 166/166 (100%), Positives = 166/166 (100%)
 Frame = +1

Query: 82  MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 261
           MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT
Sbjct: 1   MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTRVCTT 60

Query: 262 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 441
           TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD
Sbjct: 61  TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDD 120

Query: 442 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG
Sbjct: 121 HTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 166


>ref|NP_999478.1| thioredoxin [Sus scrofa].
          Length = 105

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/88 (42%), Positives = 55/88 (62%)
 Frame = +1

Query: 313 ETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 492
           E  VVVDF A WCGPCK++ P    + ++++  VV  +VD+DD  D+A E EV  +PT  
Sbjct: 20  EKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQ 78

Query: 493 AIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
             K G  V +F G  ++++LEA + +LI
Sbjct: 79  FFKKGQKVGEFSG-ANKEKLEATINELI 105


>ref|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa].
          Length = 646

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKV---VAKQHGKVVMAKVDIDDHTDLAIEY 465
           D  V  +  V+++F+A WCG CK   P  EK+   + +    + +AK+D    ++LA  +
Sbjct: 74  DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIATTLKENDPPIPVAKIDATSESELASRF 133

Query: 466 EVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 573
           +VS  PT+  +K G  VD + G + ++++ A +K++
Sbjct: 134 DVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVKEI 168



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLE---KVVAKQHGKVVMAKVDIDDHTDLAIEY 465
           D VVN    ++V+F+A WCG CK L P  E   K ++K+   + +AKVD    TDLA  +
Sbjct: 189 DEVVNDADIILVEFYAPWCGHCKKLAPEYERAAKELSKRSPPIPLAKVDATAETDLAKRF 248

Query: 466 EVSAVPTVLAIKNGDVVD 519
           +VS  PT+   + G   D
Sbjct: 249 DVSGYPTLKIFRKGKPFD 266



 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
 Frame = +1

Query: 280 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQ--HGKVVMAKVDIDDHTDL 453
           G  F   V++ +  V+++F+A WCG CK L P    +  K   H  +V+AK+D   +   
Sbjct: 533 GKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGHKNLVIAKMDATSNDIT 592

Query: 454 AIEYEVSAVPTVLAIKNGDVVD--KFV-GIKDEDQLEAFLK 567
              Y+V   PT+    +GD  +  KF  G +D + L  F++
Sbjct: 593 NDRYKVEGFPTIYFAPSGDKKNPIKFEDGNRDLEHLSKFIE 633


>ref|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa].
          Length = 505

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 286 DFQDRVVNSETP--VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAI 459
           +F+ R+ ++ +   ++V+F A WCG CK L P  E    +  G V +AKVD   +T+   
Sbjct: 34  NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 93

Query: 460 EYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG 579
           +Y VS  PT+   ++G+    + G +  D + + LKK  G
Sbjct: 94  KYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 133


>ref|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus scrofa].
          Length = 118

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 42/72 (58%)
 Frame = +1

Query: 322 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           VVV+F A WCGPCK + P L   ++ Q+  V+ A VD+D   +LA  Y ++A+PT    K
Sbjct: 23  VVVEFSATWCGPCKRIYP-LFHAMSLQYRNVMFASVDVDSARELARTYHINAIPTFQMFK 81

Query: 502 NGDVVDKFVGIK 537
               V+ F  IK
Sbjct: 82  QTQKVNLFSRIK 93


>ref|XP_003132681.2| PREDICTED: protein disulfide-isomerase A5-like isoform 2 [Sus
           scrofa].
          Length = 312

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKV----VMAKVDIDDHTDLAIE 462
           D+ V   + V+V FHA WCG CK + P  E      HG+     V+A VD   H  LA  
Sbjct: 80  DQFVKEHSSVLVMFHAPWCGHCKKMKPEFENAAEVLHGEADSSGVLAAVDATVHKALAER 139

Query: 463 YEVSAVPTVLAIKNGD 510
           + +S  PT+   KNG+
Sbjct: 140 FHISEFPTLKYFKNGE 155


>ref|XP_003356566.1| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
           scrofa].
          Length = 204

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
 Frame = +1

Query: 286 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQH---GKVVMAKVDIDDHTDLA 456
           +F D V    T   + F+A WCG CK L P  E++  K+      V +A+VD     DL 
Sbjct: 103 NFDDTVAEGVT--FIKFYAPWCGHCKNLAPIWEQLSRKEFPGLAGVKIAEVDCTAERDLC 160

Query: 457 IEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFL 564
            +Y V   PT+L  + G  V +  G +D D L  F+
Sbjct: 161 SKYSVRGYPTLLLFRGGKKVGEHSGGRDLDSLHRFV 196


>ref|XP_003128223.2| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
           scrofa].
          Length = 315

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +1

Query: 328 VDFHAQWCGPCKILGPRLEKV-VAKQHGKVV-MAKVDIDDHTDLAIEYEVSAVPTVLAIK 501
           + F A WCG CK L P  E++ +  +H   V + KVD   H +L    +V   PT+L  +
Sbjct: 97  IKFFAPWCGHCKALAPTWEQLALGLEHSATVKIGKVDCTQHYELCSGNQVRGYPTLLWFR 156

Query: 502 NGDVVDKFVGIKDEDQLEAFLK 567
           +G  VD++ G +D D L  +++
Sbjct: 157 DGKKVDQYKGKRDLDSLREYVQ 178


>ref|NP_001131101.1| endoplasmic reticulum resident protein 44 [Sus scrofa].
          Length = 406

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
 Frame = +1

Query: 295 DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---VVAKQH---GKVVMAKVDIDDHTDLA 456
           D ++N+    +V+F+A WC   ++L P  E+   V+ +++    +VV A+VD D H+D+A
Sbjct: 40  DDILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIA 99

Query: 457 IEYEVSAVPTVLAIKNG 507
             Y +S  PT+   +NG
Sbjct: 100 QRYRISKYPTLKLFRNG 116


>ref|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 10, partial [Sus
           scrofa].
          Length = 653

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/95 (28%), Positives = 47/95 (49%)
 Frame = +1

Query: 292 QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEV 471
           Q+   + + P +VDF A WC PC+ L P L K     +G++    +D   H  L   Y +
Sbjct: 321 QNFPTSDKEPWLVDFFAPWCPPCRALLPELRKASKHLYGQLKFGTLDCTVHEGLCNMYNI 380

Query: 472 SAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 576
            A PT + + N   + ++ G    +Q+  F++ L+
Sbjct: 381 QAYPTTV-VFNQSNIHEYEGHHSAEQILEFVEDLM 414



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 RSLYTTRVCTTTFNIQDGPD-----FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVV 393
           R  Y+ R+    F  Q   D     F ++V+  ++  VVDF+A WCGPC+   P  E + 
Sbjct: 515 RDAYSLRIWGLGFLPQASIDLTPQTFNEKVLQGKSHWVVDFYAPWCGPCQNFAPEFELLA 574

Query: 394 AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV 489
                KV   KVD   +     +  + A PTV
Sbjct: 575 RMVKEKVKAGKVDCQAYAQTCQKAGIRAYPTV 606


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,267,834
Number of extensions: 910332
Number of successful extensions: 4718
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4673
Number of HSP's successfully gapped: 17
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007529
         (1071 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1053   0.0  
Sscrofa_Chr04                                                         327   7e-87
Sscrofa_Chr15                                                          68   1e-08

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1053 bits (531), Expect = 0.0
 Identities = 572/586 (97%), Gaps = 2/586 (0%)
 Strand = Plus / Plus

                                                                           
Query: 467     aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 526
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009685 aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 9009744

                                                                           
Query: 527     tgggcatcaaggatgaggaccagctggaggcctttctgaagaagctgattggctgacaag 586
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009745 tgggcatcaaggatgaggaccagctggaggcctttctgaagaagctgattggctgacaag 9009804

                                                                           
Query: 587     cagggaagagtcctgactgccccggcctgccatggtcccgggggaccccgtagaactcac 646
               ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 9009805 cagggaagagtcctgactgccccggcctgccatggtcccagggaaccccgtagaactcac 9009864

                                                                           
Query: 647     agcccttctgtgccagcccttcccgcctcgtccctctgactggcccccatgggcccgtgc 706
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009865 agcccttctgtgccagcccttcccgcctcgtccctctgactggcccccatgggcccgtgc 9009924

                                                                           
Query: 707     tttggagaccaggcctccaaacacgggaccctcaagcgctcccagcctggctagctgcca 766
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009925 tttggagaccaggcctccaaacacgggaccctcaagcgctcccagcctggctagctgcca 9009984

                                                                           
Query: 767     ggctggccgccccaggagccaggacagccgtcttcccacccgctctgctccctccaggat 826
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009985 ggctggccgccccaggagccaggacagccgtcttcccacccgctctgctccctccaggat 9010044

                                                                           
Query: 827     gcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccctgatccc 886
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010045 gcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccctgatccc 9010104

                                                                           
Query: 887     ttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcctgctgct 946
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010105 ttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcctgctgct 9010164

                                                                           
Query: 947     gttttgt-nnnnnnnnngaaggaaactagaaacccgaacaagtgagagtaacatacagtt 1005
               |||||||          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010165 gttttgtaaaaaagaaagaaggaaactagaaacccgaacaagtgagagtaacatacagtt 9010224

                                                             
Query: 1006    ctctcattttgtgcaggtccttaataaggaac-tttgtgatccctc 1050
               ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 9010225 ctctcattttgtgcaggtccttaataaagaacttttgtgatccctc 9010270



 Score =  531 bits (268), Expect = e-148
 Identities = 268/268 (100%)
 Strand = Plus / Plus

                                                                           
Query: 80      agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 139
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998033 agatggctcagcgtcttctcctgaggaggttcctggcctctgtagtctccaggaagccct 8998092

                                                                           
Query: 140     ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 199
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998093 ctcatagtcggtgggcacccctcgcttccagagccctgcagaccccacagctcagcctta 8998152

                                                                           
Query: 200     gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 259
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998153 gtaacctgacaggaacacccagccaagcccggtcattatacactacccgggtctgtacaa 8998212

                                                                           
Query: 260     caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 319
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998213 caacctttaacatccaggatggacctgactttcaagaccgagttgtcaacagtgagacgc 8998272

                                           
Query: 320     cagtggttgtggatttccatgcacagtg 347
               ||||||||||||||||||||||||||||
Sbjct: 8998273 cagtggttgtggatttccatgcacagtg 8998300



 Score =  250 bits (126), Expect = 1e-63
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                           
Query: 345     gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 404
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001237 gtggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagca 9001296

                                                                           
Query: 405     tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 464
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9001297 tggaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagta 9001356

                     
Query: 465     cgaggt 470
               ||||||
Sbjct: 9001357 cgaggt 9001362



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1       ccctcaggaagtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcg 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997177 ccctcaggaagtgacgacagaagtgcccttgaccggtggggcgggccgtgctgtgcgtcg 8997236

                                    
Query: 61      cttcgctctcgttgctgggag 81
               |||||||||||||||||||||
Sbjct: 8997237 cttcgctctcgttgctgggag 8997257


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  327 bits (165), Expect = 7e-87
 Identities = 437/524 (83%), Gaps = 9/524 (1%)
 Strand = Plus / Minus

                                                                            
Query: 48       gtgctgtgcgtcgcttcgctctcgttgctgggagatggctcagcgtcttctcctgaggag 107
                ||||||||| || ||  ||||||  ||| |||| ||||||||| | ||||||||||||||
Sbjct: 99319556 gtgctgtgcatccctctgctctcactgcagggaaatggctcagtgacttctcctgaggag 99319497

                                                                            
Query: 108      gttcctggcctctgtagtctccaggaagccctctcatagtcggtgggcacccctcgcttc 167
                ||||||||  |||||| ||||   |||||| ||||| |||||||||||||||| ||| ||
Sbjct: 99319496 gttcctggggtctgtaatctctgagaagccatctcagagtcggtgggcaccccacgcctc 99319437

                                                                            
Query: 168      cagagccctgcagaccccacagctcagccttagtaacctgacaggaacacccagccaagc 227
                ||| |||||||||||||||||||||| |  |||||||||||||| || | |||  |||||
Sbjct: 99319436 cagggccctgcagaccccacagctcatcactagtaacctgacagtaatatccaatcaagc 99319377

                                                                            
Query: 228      ccggtcattatacact-acccgggtctgtacaacaacctttaacatccaggatggacctg 286
                | ||||| ||| |||| ||| | ||||||||||  | |||||||||||||||||||||||
Sbjct: 99319376 ctggtcaatattcactcaccagagtctgtacaatgatctttaacatccaggatggacctg 99319317

                                                                            
Query: 287      actttcaagaccgagttgtcaacagtgagacgccagtggttgtggatttccatgcacagt 346
                |||||| ||||||||| | |||||||||||   ||| |||||||||||||||||||||||
Sbjct: 99319316 actttcgagaccgagtggacaacagtgaga-tacaggggttgtggatttccatgcacagt 99319258

                                                                            
Query: 347      ggtgtggtccctgcaagatcctggggccaaggttagagaaggtggtggccaagcagcatg 406
                ||||||| ||||  |||| |||||||||||||||  ||||||||||||||| | ||||| 
Sbjct: 99319257 ggtgtgggccctataagaccctggggccaaggttgcagaaggtggtggccatgtagcata 99319198

                                                                            
Query: 407      gaaaggtggtgatggccaaggtggatatcgacgaccacacagacctcgccatcgagtacg 466
                |||||   |  | ||||||||||||||| || |||| ||||| |||| || | ||| | |
Sbjct: 99319197 gaaagacagccaaggccaaggtggatattgatgaccccacagccctcaccctggagcatg 99319138

                                                                            
Query: 467      aggtgtcggcggtgcccactgtgctggccatcaaaaatggggacgtggtggacaagtttg 526
                |    || || ||| || ||||||||||||||| ||||||||||   ||||| |||||||
Sbjct: 99319137 a----tcagcagtgacccctgtgctggccatcagaaatggggac---gtggaaaagtttg 99319085

                                                            
Query: 527      tgggcatcaaggatgaggaccagctggaggcctttctgaagaag 570
                |||||||| ||||| |||||||||||||| |  |||||||||||
Sbjct: 99319084 tgggcatccaggataaggaccagctggagacacttctgaagaag 99319041



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 114/134 (85%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                            
Query: 820      ccaggatgcttggacagagccgcggggccagcctgtggtaccaccttggtcccatctccc 879
                |||||||||||||||||||| | |||||| |||||  | | || ||||||   |||||||
Sbjct: 99318434 ccaggatgcttggacagagc-gtggggcccgcctgcagcaacagcttggtttaatctccc 99318376

                                                                            
Query: 880      tgatcccttctgatctgaaccctggtgcctggctcatctgcctcctgcgtttttctttcc 939
                ||  ||||||||||||||||||  |  |||||||||||||| |||||| |||||||||||
Sbjct: 99318375 tggacccttctgatctgaaccccaggacctggctcatctgcttcctgcatttttctttcc 99318316

                              
Query: 940      tgctgctgttttgt 953
                ||||||| ||||||
Sbjct: 99318315 tgctgctcttttgt 99318302



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                            
Query: 628      gggaccccgtagaactcacagcccttctgtgccagcccttcccgcctcgtccctctgact 687
                |||||||| |||||||||||||||||||||||||||||||||  |||| || ||||||||
Sbjct: 99318717 gggaccccatagaactcacagcccttctgtgccagcccttcctacctcttcactctgact 99318658

                    
Query: 688      ggcc 691
                ||||
Sbjct: 99318657 ggcc 99318654


>Sscrofa_Chr15 
||          Length = 157681621

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                             
Query: 681       tctgactggcccccatgggcccgtgctttggagaccaggcctccaaacacgggaccctca 740
                 |||| ||||||||  |||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 157304230 tctgcctggcccctgtgggcctgtgcttaggagaccaggcctccaaacacaggagcctca 157304171

                           
Query: 741       agcgctccca 750
                  | |||||||
Sbjct: 157304170 ggtgctccca 157304161


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,030,052
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 10
Length of query: 1071
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1050
Effective length of database: 2,808,413,156
Effective search space: 2948833813800
Effective search space used: 2948833813800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)