Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786986.1| ras-related C3 botulinum toxin substrate 2 prec... 395 e-109
Alignment gi|NP_776588.1| ras-related C3 botulinum toxin substrate 1 prec... 367 e-101
Alignment gi|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [... 359 6e-99
Alignment gi|NP_001039797.1| cell division control protein 42 homolog pre... 275 1e-73
Alignment gi|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos ta... 274 3e-73
Alignment gi|XP_002700065.1| PREDICTED: ras homolog gene family, member G... 265 9e-71
Alignment gi|XP_609522.3| PREDICTED: ras homolog gene family, member G-li... 265 9e-71
Alignment gi|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos ta... 244 3e-64
Alignment gi|XP_002691351.1| PREDICTED: ras homolog gene family, member Q... 244 3e-64
Alignment gi|NP_001076967.1| rho-related GTP-binding protein RhoJ [Bos ta... 230 3e-60
>ref|NP_786986.1| ras-related C3 botulinum toxin substrate 2 precursor [Bos taurus].
Length = 192
Score = 395 bits (1014), Expect = e-109
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 809 PTRPQKRPCSIL 844
PTRPQKRPCSIL
Sbjct: 181 PTRPQKRPCSIL 192
>ref|NP_776588.1| ras-related C3 botulinum toxin substrate 1 precursor [Bos taurus].
Length = 192
Score = 367 bits (942), Expect = e-101
Identities = 176/192 (91%), Positives = 184/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [Bos taurus].
Length = 192
Score = 359 bits (921), Expect = 6e-99
Identities = 170/191 (89%), Positives = 182/191 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP TPI+LVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIE+L++KKLAPITYPQGLA+A+EI SVKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSI 841
P + + C++
Sbjct: 181 PVKKPGKKCTV 191
>ref|NP_001039797.1| cell division control protein 42 homolog precursor [Bos taurus].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos taurus].
Length = 191
Score = 274 bits (700), Expect = 3e-73
Identities = 136/192 (70%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ+IKCVVVGDGAVGKTCLLI YTTNAFP EYIPTVFDNYSA VD + VNL LWDTAG
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT+VF+ICFS+ SP SYENVR KW PEV HHCP PI+LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DT+ +LKE+ APIT QG ALAK+I +V+YLECSAL Q G+K VF EA+RAVL P
Sbjct: 121 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT 180
Query: 809 PTRPQKRPCSIL 844
P + + R C +L
Sbjct: 181 PVK-RGRSCVLL 191
>ref|XP_002700065.1| PREDICTED: ras homolog gene family, member G-like [Bos taurus].
Length = 191
Score = 265 bits (678), Expect = 9e-71
Identities = 128/192 (66%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTNAFP EYIPTVFDNYSA VD + V L LWDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVILNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT++F+ICFS+ +P+SY NVR KW+PEV HHCP+ P++LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
D +T++KLKE+ L P + QG +LAK++ +VKYLECSAL G++ VF EAIRAVL P
Sbjct: 121 SDLETVKKLKEQSLVPTSPQQGTSLAKQVGAVKYLECSALMHDGVREVFLEAIRAVLYP- 179
Query: 809 PTRPQKRPCSIL 844
T+ + C +L
Sbjct: 180 ATKKNTKKCVLL 191
>ref|XP_609522.3| PREDICTED: ras homolog gene family, member G-like [Bos taurus].
Length = 191
Score = 265 bits (678), Expect = 9e-71
Identities = 128/192 (66%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTNAFP EYIPTVFDNYSA VD + V L LWDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVILNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT++F+ICFS+ +P+SY NVR KW+PEV HHCP+ P++LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
D +T++KLKE+ L P + QG +LAK++ +VKYLECSAL G++ VF EAIRAVL P
Sbjct: 121 SDLETVKKLKEQSLVPTSPQQGTSLAKQVGAVKYLECSALMHDGVREVFLEAIRAVLYP- 179
Query: 809 PTRPQKRPCSIL 844
T+ + C +L
Sbjct: 180 ATKKNTKKCVLL 191
>ref|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos taurus].
Length = 205
Score = 244 bits (622), Expect = 3e-64
Identities = 115/184 (62%), Positives = 146/184 (79%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V K LGL+DTAGQED
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
YDRLRPLSYP TDVFLICFS+V+PAS++NV+ +W PE++ + P+ P +L+GT++DLRDD
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L + K PI QG LAKEI + Y+ECSALTQ+GLKTVFDEAI A+L P+
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT 189
Query: 818 PQKR 829
+KR
Sbjct: 190 VKKR 193
>ref|XP_002691351.1| PREDICTED: ras homolog gene family, member Q-like [Bos taurus].
Length = 205
Score = 244 bits (622), Expect = 3e-64
Identities = 115/184 (62%), Positives = 146/184 (79%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V K LGL+DTAGQED
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
YDRLRPLSYP TDVFLICFS+V+PAS++NV+ +W PE++ + P+ P +L+GT++DLRDD
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L + K PI QG LAKEI + Y+ECSALTQ+GLKTVFDEAI A+L P+
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT 189
Query: 818 PQKR 829
+KR
Sbjct: 190 VKKR 193
>ref|NP_001076967.1| rho-related GTP-binding protein RhoJ [Bos taurus].
Length = 214
Score = 230 bits (587), Expect = 3e-60
Identities = 112/187 (59%), Positives = 141/187 (75%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 22 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 81
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE++ P P +L+GT++DLRDD
Sbjct: 82 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKGCMPHVPYVLIGTQIDLRDDP 141
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI + P +
Sbjct: 142 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHP---K 198
Query: 818 PQKRPCS 838
+K+ CS
Sbjct: 199 KKKKHCS 205
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,637,431
Number of extensions: 2292425
Number of successful extensions: 11006
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 10581
Number of HSP's successfully gapped: 148
Length of query: 691
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 582
Effective length of database: 14,074,782
Effective search space: 8191523124
Effective search space used: 8191523124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 p... 367 e-101
Alignment gi|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis fami... 364 e-100
Alignment gi|XP_538392.2| PREDICTED: similar to Ras-related C3 botulinum ... 307 3e-83
Alignment gi|NP_001003254.1| cell division control protein 42 homolog pre... 275 1e-73
Alignment gi|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding p... 275 1e-73
Alignment gi|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis fam... 275 1e-73
Alignment gi|XP_849332.1| PREDICTED: similar to cell division cycle 42 [C... 273 5e-73
Alignment gi|XP_549069.2| PREDICTED: similar to Rho-related GTP-binding p... 269 7e-72
Alignment gi|XP_858543.1| PREDICTED: similar to cell division cycle 42 is... 269 7e-72
Alignment gi|XP_849344.1| PREDICTED: similar to cell division cycle 42 is... 269 7e-72
>ref|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 precursor [Canis lupus
familiaris].
Length = 192
Score = 367 bits (942), Expect = e-101
Identities = 176/192 (91%), Positives = 184/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis familiaris].
Length = 192
Score = 364 bits (934), Expect = e-100
Identities = 175/192 (91%), Positives = 183/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVV DGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVEDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|XP_538392.2| PREDICTED: similar to Ras-related C3 botulinum toxin substrate 2
(p21-Rac2) (Small G protein) (GX) [Canis familiaris].
Length = 177
Score = 307 bits (786), Expect = 3e-83
Identities = 148/149 (99%), Positives = 149/149 (100%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEI 715
DDKDTIE+LKEKKLAPITYPQGLALAKEI
Sbjct: 121 DDKDTIERLKEKKLAPITYPQGLALAKEI 149
>ref|NP_001003254.1| cell division control protein 42 homolog precursor [Canis lupus
familiaris].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding protein RhoG (Sid
10750) [Canis familiaris].
Length = 255
Score = 275 bits (703), Expect = 1e-73
Identities = 137/196 (69%), Positives = 156/196 (79%)
Frame = +2
Query: 257 ASDAMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLW 436
A+ MQ+IKCVVVGDGAVGKTCLLI YTTNAFP EYIPTVFDNYSA VD + VNL LW
Sbjct: 61 AAPTMQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLW 120
Query: 437 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 616
DTAGQE+YDRLR LSYPQT+VF+ICFS+ SP SYENVR KW PEV HHCP PI+LVGTK
Sbjct: 121 DTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTK 180
Query: 617 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 796
DLR DT+ +LKE+ APIT QG ALAK+I +V+YLECSAL Q G+K VF EA+RAV
Sbjct: 181 KDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAV 240
Query: 797 LCPQPTRPQKRPCSIL 844
L P P + + R C +L
Sbjct: 241 LNPTPIK-RGRSCVLL 255
>ref|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis familiaris].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|XP_849332.1| PREDICTED: similar to cell division cycle 42 [Canis familiaris].
Length = 191
Score = 273 bits (698), Expect = 5e-73
Identities = 131/193 (67%), Positives = 155/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+P VFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|XP_549069.2| PREDICTED: similar to Rho-related GTP-binding protein RhoG (Sid
10750) [Canis familiaris].
Length = 191
Score = 269 bits (688), Expect = 7e-72
Identities = 129/192 (67%), Positives = 155/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTNAFP EYIPTVFDNYSA VD + V+L LWDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT++F+ICFS+ +P+SY NVR KW PEV HHCP+ P++LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWHPEVSHHCPNVPVLLVGTKRDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
+D +T++KLKE+ L P T QG +LAK++ +VKYLECSAL Q G+ VF EA+RAVL P
Sbjct: 121 NDVETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALLQDGVHEVFSEAVRAVLYP- 179
Query: 809 PTRPQKRPCSIL 844
T+ + C +L
Sbjct: 180 ATKKSTKKCVLL 191
>ref|XP_858543.1| PREDICTED: similar to cell division cycle 42 isoform 3 [Canis
familiaris].
Length = 193
Score = 269 bits (688), Expect = 7e-72
Identities = 132/195 (67%), Positives = 156/195 (80%), Gaps = 3/195 (1%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYMPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC--PSTPIILVGTKLD 622
QEDYDRLRPLSYPQTDVFL+CFS+VSP+SYENV+ KW PE+ HHC P TP +LVGT++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSYENVKEKWVPEITHHCQKPKTPFLLVGTQID 120
Query: 623 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 802
LRDD TIEKL + K PIT LA+++ +VKY++CSALTQ+GLK VFDEAI A L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVKCSALTQKGLKNVFDEAILAAL- 179
Query: 803 PQPTRPQK-RPCSIL 844
+P P+K R C +L
Sbjct: 180 -EPPEPKKSRRCVLL 193
>ref|XP_849344.1| PREDICTED: similar to cell division cycle 42 isoform 2 [Canis
familiaris].
Length = 193
Score = 269 bits (688), Expect = 7e-72
Identities = 132/195 (67%), Positives = 156/195 (80%), Gaps = 3/195 (1%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYMPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC--PSTPIILVGTKLD 622
QEDYDRLRPLSYPQTDVFL+CFS+VSP+SYENV+ KW PE+ HHC P TP +LVGT++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSYENVKEKWVPEITHHCQKPKTPFLLVGTQID 120
Query: 623 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 802
LRDD TIEKL + K PIT LA+++ +VKY++CSALTQ+GLK VFDEAI A L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVKCSALTQKGLKNVFDEAILAAL- 179
Query: 803 PQPTRPQK-RPCSIL 844
+P P+K R C +L
Sbjct: 180 -EPPEPKKSRRCVLL 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 83,077,760
Number of extensions: 2361024
Number of successful extensions: 12036
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 11552
Number of HSP's successfully gapped: 148
Length of query: 691
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 581
Effective length of database: 15,207,544
Effective search space: 8835583064
Effective search space used: 8835583064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002863.1| ras-related C3 botulinum toxin substrate 2 prec... 388 e-107
Alignment gi|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isof... 367 e-101
Alignment gi|NP_005043.1| ras-related C3 botulinum toxin substrate 3 prec... 359 6e-99
Alignment gi|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isof... 355 7e-98
Alignment gi|NP_426359.1| cell division control protein 42 homolog isofor... 281 2e-75
Alignment gi|NP_001034891.1| cell division control protein 42 homolog iso... 275 1e-73
Alignment gi|NP_001782.1| cell division control protein 42 homolog isofor... 275 1e-73
Alignment gi|NP_001656.2| rho-related GTP-binding protein RhoG precursor ... 273 3e-73
Alignment gi|NP_036381.2| rho-related GTP-binding protein RhoQ precursor ... 244 3e-64
Alignment gi|NP_065714.1| rho-related GTP-binding protein RhoJ precursor ... 233 5e-61
>ref|NP_002863.1| ras-related C3 botulinum toxin substrate 2 precursor [Homo
sapiens].
Length = 192
Score = 388 bits (996), Expect = e-107
Identities = 189/192 (98%), Positives = 190/192 (98%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 809 PTRPQKRPCSIL 844
PTR QKR CS+L
Sbjct: 181 PTRQQKRACSLL 192
>ref|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isoform Rac1 [Homo
sapiens].
Length = 192
Score = 367 bits (942), Expect = e-101
Identities = 176/192 (91%), Positives = 184/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|NP_005043.1| ras-related C3 botulinum toxin substrate 3 precursor [Homo
sapiens].
Length = 192
Score = 359 bits (921), Expect = 6e-99
Identities = 170/191 (89%), Positives = 182/191 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP TPI+LVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIE+L++KKLAPITYPQGLA+A+EI SVKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSI 841
P + + C++
Sbjct: 181 PVKKPGKKCTV 191
>ref|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isoform Rac1b [Homo
sapiens].
Length = 211
Score = 355 bits (912), Expect = 7e-98
Identities = 176/211 (83%), Positives = 184/211 (87%), Gaps = 19/211 (9%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQT-------------------DVFLICFSLVSPASYENVRAKWFPEV 571
QEDYDRLRPLSYPQT DVFLICFSLVSPAS+ENVRAKW+PEV
Sbjct: 61 QEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV 120
Query: 572 RHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALT 751
RHHCP+TPIILVGTKLDLRDDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALT
Sbjct: 121 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 180
Query: 752 QRGLKTVFDEAIRAVLCPQPTRPQKRPCSIL 844
QRGLKTVFDEAIRAVLCP P + +KR C +L
Sbjct: 181 QRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 211
>ref|NP_426359.1| cell division control protein 42 homolog isoform 2 [Homo sapiens].
Length = 191
Score = 281 bits (719), Expect = 2e-75
Identities = 131/189 (69%), Positives = 155/189 (82%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQRGLK VFDEAI A L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP 180
Query: 809 PTRPQKRPC 835
T+P+++ C
Sbjct: 181 ETQPKRKCC 189
>ref|NP_001034891.1| cell division control protein 42 homolog isoform 1 [Homo sapiens].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|NP_001782.1| cell division control protein 42 homolog isoform 1 [Homo sapiens].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|NP_001656.2| rho-related GTP-binding protein RhoG precursor [Homo sapiens].
Length = 191
Score = 273 bits (699), Expect = 3e-73
Identities = 136/192 (70%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ+IKCVVVGDGAVGKTCLLI YTTNAFP EYIPTVFDNYSA VD + VNL LWDTAG
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT+VF+ICFS+ SP SYENVR KW PEV HHCP PI+LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DT+ +LKE+ APIT QG ALAK+I +V+YLECSAL Q G+K VF EA+RAVL P
Sbjct: 121 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT 180
Query: 809 PTRPQKRPCSIL 844
P + + R C +L
Sbjct: 181 PIK-RGRSCILL 191
>ref|NP_036381.2| rho-related GTP-binding protein RhoQ precursor [Homo sapiens].
Length = 205
Score = 244 bits (622), Expect = 3e-64
Identities = 115/184 (62%), Positives = 146/184 (79%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V K LGL+DTAGQED
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
YDRLRPLSYP TDVFLICFS+V+PAS++NV+ +W PE++ + P+ P +L+GT++DLRDD
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L + K PI QG LAKEI + Y+ECSALTQ+GLKTVFDEAI A+L P+
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT 189
Query: 818 PQKR 829
+KR
Sbjct: 190 VKKR 193
>ref|NP_065714.1| rho-related GTP-binding protein RhoJ precursor [Homo sapiens].
Length = 214
Score = 233 bits (594), Expect = 5e-61
Identities = 113/195 (57%), Positives = 145/195 (74%)
Frame = +2
Query: 254 QASDAMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGL 433
+ +D + +KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL
Sbjct: 14 RGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGL 73
Query: 434 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGT 613
+DTAGQEDY++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE++ P P +L+GT
Sbjct: 74 YDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGT 133
Query: 614 KLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRA 793
++DLRDD T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI
Sbjct: 134 QIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILT 193
Query: 794 VLCPQPTRPQKRPCS 838
+ P + +K+ CS
Sbjct: 194 IFHP---KKKKKRCS 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 81,244,030
Number of extensions: 2300254
Number of successful extensions: 10920
Number of sequences better than 1.0e-05: 170
Number of HSP's gapped: 10408
Number of HSP's successfully gapped: 170
Length of query: 691
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 582
Effective length of database: 14,704,088
Effective search space: 8557779216
Effective search space used: 8557779216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033034.1| ras-related C3 botulinum toxin substrate 2 prec... 390 e-108
Alignment gi|NP_033033.1| ras-related C3 botulinum toxin substrate 1 prec... 367 e-101
Alignment gi|NP_573486.1| ras-related C3 botulinum toxin substrate 3 prec... 359 5e-99
Alignment gi|NP_001230698.1| cell division control protein 42 homolog iso... 281 1e-75
Alignment gi|NP_033991.1| cell division control protein 42 homolog isofor... 275 1e-73
Alignment gi|NP_062512.1| rho-related GTP-binding protein RhoG precursor ... 273 3e-73
Alignment gi|NP_663466.2| rho-related GTP-binding protein RhoQ precursor ... 243 3e-64
Alignment gi|NP_075764.1| rho-related GTP-binding protein RhoJ precursor ... 229 6e-60
Alignment gi|NP_598716.1| rho-related GTP-binding protein RhoU [Mus muscu... 216 5e-56
Alignment gi|NP_001155245.1| ras homolog gene family, member A [Mus muscu... 215 9e-56
>ref|NP_033034.1| ras-related C3 botulinum toxin substrate 2 precursor [Mus
musculus].
Length = 192
Score = 390 bits (1001), Expect = e-108
Identities = 189/192 (98%), Positives = 191/192 (99%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKLAPITYPQGLALAK+IDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 809 PTRPQKRPCSIL 844
PTR QKRPCS+L
Sbjct: 181 PTRQQKRPCSLL 192
>ref|NP_033033.1| ras-related C3 botulinum toxin substrate 1 precursor [Mus
musculus].
Length = 192
Score = 367 bits (942), Expect = e-101
Identities = 176/192 (91%), Positives = 184/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|NP_573486.1| ras-related C3 botulinum toxin substrate 3 precursor [Mus
musculus].
Length = 192
Score = 359 bits (921), Expect = 5e-99
Identities = 170/191 (89%), Positives = 182/191 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP TPI+LVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIE+L++KKLAPITYPQGLA+A+EI SVKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSI 841
P + + C++
Sbjct: 181 PVKKPGKKCTV 191
>ref|NP_001230698.1| cell division control protein 42 homolog isoform 2 [Mus musculus].
Length = 191
Score = 281 bits (719), Expect = 1e-75
Identities = 131/189 (69%), Positives = 155/189 (82%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQRGLK VFDEAI A L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP 180
Query: 809 PTRPQKRPC 835
T+P+++ C
Sbjct: 181 ETQPKRKCC 189
>ref|NP_033991.1| cell division control protein 42 homolog isoform 1 precursor [Mus
musculus].
Length = 191
Score = 275 bits (703), Expect = 1e-73
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|NP_062512.1| rho-related GTP-binding protein RhoG precursor [Mus musculus].
Length = 191
Score = 273 bits (699), Expect = 3e-73
Identities = 136/192 (70%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ+IKCVVVGDGAVGKTCLLI YTTNAFP EYIPTVFDNYSA VD + VNL LWDTAG
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT+VF+ICFS+ SP SYENVR KW PEV HHCP PI+LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DT+ +LKE+ APIT QG ALAK+I +V+YLECSAL Q G+K VF EA+RAVL P
Sbjct: 121 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT 180
Query: 809 PTRPQKRPCSIL 844
P + + R C +L
Sbjct: 181 PIK-RGRSCILL 191
>ref|NP_663466.2| rho-related GTP-binding protein RhoQ precursor [Mus musculus].
Length = 205
Score = 243 bits (621), Expect = 3e-64
Identities = 114/184 (61%), Positives = 146/184 (79%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V K LGL+DTAGQED
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
YDRLRPLSYP TDVFLICFS+V+PAS++NV+ +W PE++ + P+ P +L+GT++DLRDD
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L + K P+ QG LAKEI + Y+ECSALTQ+GLKTVFDEAI A+L P+
Sbjct: 130 KTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT 189
Query: 818 PQKR 829
+KR
Sbjct: 190 VKKR 193
>ref|NP_075764.1| rho-related GTP-binding protein RhoJ precursor [Mus musculus].
Length = 214
Score = 229 bits (584), Expect = 6e-60
Identities = 111/186 (59%), Positives = 140/186 (75%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 22 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 81
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE++ P P +L+GT++DLRDD
Sbjct: 82 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDP 141
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI + P +
Sbjct: 142 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHP---K 198
Query: 818 PQKRPC 835
+K+ C
Sbjct: 199 KKKKGC 204
>ref|NP_598716.1| rho-related GTP-binding protein RhoU [Mus musculus].
Length = 261
Score = 216 bits (550), Expect = 5e-56
Identities = 105/189 (55%), Positives = 136/189 (71%), Gaps = 1/189 (0%)
Frame = +2
Query: 230 PAVTTTASQASDAM-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 406
P V+ +A A + +KCV+VGDGAVGKT L++SYTTN +P EYIPT FDN+SA V V
Sbjct: 36 PGVSGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV 95
Query: 407 DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 586
D +PV L L DTAGQ+++D+LRPL Y TD+FL+CFS+VSP S++NV KW PE+R HCP
Sbjct: 96 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPEIRRHCP 155
Query: 587 STPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 766
PIILVGT+ DLR+D + +L + K P+ A+E+ +V Y+ECSALTQ+ LK
Sbjct: 156 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEVKAVSYIECSALTQKNLK 215
Query: 767 TVFDEAIRA 793
VFD AI A
Sbjct: 216 EVFDAAIVA 224
>ref|NP_001155245.1| ras homolog gene family, member A [Mus musculus].
Length = 193
Score = 215 bits (548), Expect = 9e-56
Identities = 104/183 (56%), Positives = 136/183 (74%)
Frame = +2
Query: 281 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 460
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 461 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 640
DRLRPLSYP TDV L+CFS+ +P S+ N+ KW PEV+H CP+ PIILVG+K DLR+D
Sbjct: 67 DRLRPLSYPDTDVLLLCFSIGNPDSFGNIPHKWIPEVKHFCPNVPIILVGSKKDLRNDFY 126
Query: 641 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRP 820
TI++L ++K AP+ QG LA I + +Y+ECSA T+ G++ VF++A RA L Q R
Sbjct: 127 TIQELAKRKQAPVRPEQGQGLANSIGAFEYVECSAKTKDGVRRVFEKATRAAL--QTNRV 184
Query: 821 QKR 829
+K+
Sbjct: 185 KKK 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,432,300
Number of extensions: 1904826
Number of successful extensions: 8594
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 8203
Number of HSP's successfully gapped: 133
Length of query: 691
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 583
Effective length of database: 12,373,671
Effective search space: 7213850193
Effective search space used: 7213850193
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin su... 395 e-110
Alignment gi|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (... 367 e-101
Alignment gi|NP_001072148.1| cell division control protein 42 homolog pre... 280 2e-75
Alignment gi|XP_003356236.1| PREDICTED: cell division control protein 42 ... 275 7e-74
Alignment gi|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus sc... 274 1e-73
Alignment gi|XP_003362241.1| PREDICTED: rho-related GTP-binding protein R... 270 2e-72
Alignment gi|XP_003135221.2| PREDICTED: rho-related GTP-binding protein R... 270 2e-72
Alignment gi|NP_001161889.1| rho-related GTP-binding protein RhoJ [Sus sc... 230 3e-60
Alignment gi|XP_003125894.1| PREDICTED: rho-related GTP-binding protein R... 210 2e-54
Alignment gi|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus sc... 207 1e-53
>ref|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin substrate 2-like [Sus
scrofa].
Length = 192
Score = 395 bits (1014), Expect = e-110
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 809 PTRPQKRPCSIL 844
PTRPQKRPCSIL
Sbjct: 181 PTRPQKRPCSIL 192
>ref|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP
binding protein Rac1) [Sus scrofa].
Length = 192
Score = 367 bits (942), Expect = e-101
Identities = 176/192 (91%), Positives = 184/192 (95%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFLICFSLVSPAS+ENVRAKW+PEVRHHCP+TPIILVGTKLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DDKDTIEKLKEKKL PITYPQGLA+AKEI +VKYLECSALTQRGLKTVFDEAIRAVLCP
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 809 PTRPQKRPCSIL 844
P + +KR C +L
Sbjct: 181 PVKKRKRKCLLL 192
>ref|NP_001072148.1| cell division control protein 42 homolog precursor [Sus scrofa].
Length = 191
Score = 280 bits (716), Expect = 2e-75
Identities = 130/189 (68%), Positives = 155/189 (82%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQRGLK VFDEAI + L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILSALEPP 180
Query: 809 PTRPQKRPC 835
T+P+++ C
Sbjct: 181 ETQPKRKCC 189
>ref|XP_003356236.1| PREDICTED: cell division control protein 42 homolog [Sus scrofa].
Length = 191
Score = 275 bits (703), Expect = 7e-74
Identities = 132/193 (68%), Positives = 156/193 (80%), Gaps = 1/193 (0%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHCP TP +LVGT++DLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DD TIEKL + K PIT LA+++ +VKY+ECSALTQ+GLK VFDEAI A L +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--E 178
Query: 809 PTRPQK-RPCSIL 844
P P+K R C +L
Sbjct: 179 PPEPKKSRRCVLL 191
>ref|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus scrofa].
Length = 191
Score = 274 bits (701), Expect = 1e-73
Identities = 136/192 (70%), Positives = 154/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ+IKCVVVGDGAVGKTCLLI YTTNAFP EYIPTVFDNYSA VD + VNL LWDTAG
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT+VF+ICFS+ SP SYENVR KW PEV HHCP PI+LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
DT+ +LKE+ APIT QG ALAK+I +V+YLECSAL Q G+K VF EA+RAVL P
Sbjct: 121 SQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT 180
Query: 809 PTRPQKRPCSIL 844
P + + R C +L
Sbjct: 181 PIK-RGRSCVLL 191
>ref|XP_003362241.1| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 270 bits (691), Expect = 2e-72
Identities = 129/192 (67%), Positives = 155/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTNAFP EYIPTVFDNYSA VD + V+L LWDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT++F+ICFS+ +P+SY NVR KW+PEV HHCP+ P++LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
D +T++KLKE+ L P T QG +LAK++ +VKYLECSAL Q G+ VF EA+RAVL P
Sbjct: 121 SDLETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALMQDGVHEVFSEAVRAVLYP- 179
Query: 809 PTRPQKRPCSIL 844
T+ + C +L
Sbjct: 180 ATKKNTKKCVLL 191
>ref|XP_003135221.2| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 270 bits (691), Expect = 2e-72
Identities = 129/192 (67%), Positives = 155/192 (80%)
Frame = +2
Query: 269 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 448
MQ IKCVVVGDGAVGKTCLLISYTTNAFP EYIPTVFDNYSA VD + V+L LWDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAG 60
Query: 449 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 628
QE+YDRLR LSYPQT++F+ICFS+ +P+SY NVR KW+PEV HHCP+ P++LVGTK DLR
Sbjct: 61 QEEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLR 120
Query: 629 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 808
D +T++KLKE+ L P T QG +LAK++ +VKYLECSAL Q G+ VF EA+RAVL P
Sbjct: 121 SDLETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALMQDGVHEVFSEAVRAVLYP- 179
Query: 809 PTRPQKRPCSIL 844
T+ + C +L
Sbjct: 180 ATKKNTKKCVLL 191
>ref|NP_001161889.1| rho-related GTP-binding protein RhoJ [Sus scrofa].
Length = 213
Score = 230 bits (586), Expect = 3e-60
Identities = 112/187 (59%), Positives = 140/187 (74%)
Frame = +2
Query: 278 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 457
+ CVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 21 LNCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 80
Query: 458 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 637
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE+R P P +L+GT++DLRDD
Sbjct: 81 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 140
Query: 638 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 817
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI + P +
Sbjct: 141 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHP---K 197
Query: 818 PQKRPCS 838
+K+ CS
Sbjct: 198 KKKKRCS 204
>ref|XP_003125894.1| PREDICTED: rho-related GTP-binding protein RhoC-like [Sus scrofa].
Length = 193
Score = 210 bits (535), Expect = 2e-54
Identities = 104/188 (55%), Positives = 132/188 (70%)
Frame = +2
Query: 281 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 460
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 461 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 640
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 641 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRP 820
T +L + K P+ +G +A I + YLECSA T+ G++ VF+ A RA L + +
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNK- 185
Query: 821 QKRPCSIL 844
++R C IL
Sbjct: 186 RRRGCPIL 193
>ref|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus scrofa].
Length = 193
Score = 207 bits (528), Expect = 1e-53
Identities = 104/189 (55%), Positives = 133/189 (70%), Gaps = 1/189 (0%)
Frame = +2
Query: 281 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 460
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 461 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 640
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILVG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 641 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRP 820
T +L + K P+ +G +A I + Y+ECSA T+ G++ VF+ A RA L Q R
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL--QARRG 184
Query: 821 QKRP-CSIL 844
+K+ C +L
Sbjct: 185 KKKSGCLVL 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,474,656
Number of extensions: 1483185
Number of successful extensions: 7572
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 7129
Number of HSP's successfully gapped: 113
Length of query: 691
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 585
Effective length of database: 8,704,850
Effective search space: 5092337250
Effective search space used: 5092337250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007531
(2073 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 2250 0.0
Sscrofa_Chr09 111 2e-21
Sscrofa_Chr03 90 6e-15
gb|GL896504.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 88 2e-14
Sscrofa_ChrX 88 2e-14
Sscrofa_Chr04 76 9e-11
gb|GL896322.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 74 3e-10
gb|GL895440.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 62 1e-06
>Sscrofa_Chr05
|| Length = 111506441
Score = 2250 bits (1135), Expect = 0.0
Identities = 1202/1218 (98%), Gaps = 6/1218 (0%)
Strand = Plus / Plus
Query: 849 ggacgagcccagcccttgcagccagatggttctgaccctccaggacccccgatggcaccc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165696 ggacgagcccagcccttgcagccagatggttctgaccctccaggacccccgatggcaccc 8165755
Query: 909 tggctgtcccctccttgtggcgtttcccagcaagatggctgctgagcttggtcttctccg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165756 tggctgtcccctccttgtggcgtttcccagcaagatggctgctgagcttggtcttctccg 8165815
Query: 969 tgctagaggcccccacccccggggcccaaggggtgtgaatctgtaggcgctgcatccccc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165816 tgctagaggcccccacccccggggcccaaggggtgtgaatctgtaggcgctgcatccccc 8165875
Query: 1029 tccccttgtgctcctatctggaaccagaggggaaccctaggacctgataagccgcccctg 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165876 tccccttgtgctcctatctggaaccagaggggaaccctaggacctgataagccgcccctg 8165935
Query: 1089 cgttgctgtggtcagatgccacacatggcattatctgcctgtttacccctctggaaactt 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165936 cgttgctgtggtcagatgccacacatggcattatctgcctgtttacccctctggaaactt 8165995
Query: 1149 cgggccagatggtcgccgatcaccactcgtccaccttcagggacgggtctctcggtcgac 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165996 cgggccagatggtcgccgatcaccactcgtccaccttcagggacgggtctctcggtcgac 8166055
Query: 1209 tctactgttgatgattctacttatctgagcgttctcctcctgagctgaattaagggtctc 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166056 tctactgttgatgattctacttatctgagcgttctcctcctgagctgaattaagggtctc 8166115
Query: 1269 agaacctttactcctctggtcttagtcctccttggggggacaatataaaatatttgtttt 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166116 agaacctttactcctctggtcttagtcctccttggggggacaatataaaatatttgtttt 8166175
Query: 1329 ctaaacctctatggacacctacccagccaattgaaaagctgggtccagctgactcctgcc 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166176 ctaaacctctatggacacctacccagccaattgaaaagctgggtccagctgactcctgcc 8166235
Query: 1389 atctcttgtctttctgctccactcacaggatcctgagctgcatttacctgcgagggtctt 1448
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8166236 atctcttgtctttctgctccactcacaggatcctgagctgcatttacctgtgagggtctt 8166295
Query: 1449 aaaactttcagcccttgccagtcaggactatgccattgcccacagaaatccaatacaacc 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8166296 aaaactttcagcccttgccagtcaggactatgccattgcccacagaaatccaattcaacc 8166355
Query: 1509 tgcttaagcagaaaataaatttattaattcaagtctgaaaatttcatgacttcaggtgca 1568
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166356 tgcttaaacagaaaataaatttattaattcaagtctgaaaatttcatgacttcaggtgca 8166415
Query: 1569 gcttgatcaagggggcacaaatgatgacatcaaggctcattttcctgtccttctttgctc 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166416 gcttgatcaagggggcacaaatgatgacatcaaggctcattttcctgtccttctttgctc 8166475
Query: 1629 taccttctgctgtctggttcattcttaggcaggtaactctccaggtttcatctttccaat 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166476 taccttctgctgtctggttcattcttaggcaggtaactctccaggtttcatctttccaat 8166535
Query: 1689 ttcaagttcagcaaaaaagagcaagcgtctgcccccaggcaaagttgtattgaaggttta 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166536 ttcaagttcagcaaaaaagagcaagcgtctgcccccaggcaaagttgtattgaaggttta 8166595
Query: 1749 ctctgattggaccagcctaggtcttggggctcccttcaaccaatcatatctgtcaggaga 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166596 ctctgattggaccagcctaggtcttggggctcccttcaaccaatcatatctgtcaggaga 8166655
Query: 1809 aagctgtgctctgattggtcaagcttagactacatgccagcctagaacatggagtcgagg 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166656 aagctgtgctctgattggtcaagcttagactacatgccagcctagaacatggagtcgagg 8166715
Query: 1869 cagccctttc-aaaccacacaccctanggaggagggaaggggtggnttctcaaatggaga 1927
|||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 8166716 cagccctttcaaaaccacacaccctagggaggagggaaggggttggttctcaaatggaga 8166775
Query: 1928 gccctgccaggattngggaaggtggttgttgaaaacatgag-aacccacagtctctacca 1986
|||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 8166776 gccctgccaggatttgggaaggtggttgttgaaca-atgagaaacccacagtctctacca 8166834
Query: 1987 ttggaggtcccangaaagtgtcccnactgggtaagg-agcagtgctggtccca-ggggca 2044
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct: 8166835 ttggaggtcccaggaaagtgtcccaactgggtaaggaagcagtgctggtcccagggggca 8166894
Query: 2045 ct-agcacaggggaagtt 2061
|| |||||||||||||||
Sbjct: 8166895 ctaagcacaggggaagtt 8166912
Score = 321 bits (162), Expect = 9e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 555 agtggttccccgaggtgcggcatcattgccccagcacgcccatcatcctggtgggcacca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160927 agtggttccccgaggtgcggcatcattgccccagcacgcccatcatcctggtgggcacca 8160986
Query: 615 agctggacctgcgggatgacaaggacaccatcgagaagctgaaggagaagaagctcgcgc 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160987 agctggacctgcgggatgacaaggacaccatcgagaagctgaaggagaagaagctcgcgc 8161046
Query: 675 ctattacctacccacagggcctggcgctggccaaggagatcg 716
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8161047 ctattacctacccacagggcctggcgctggccaaggagatcg 8161088
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 716 gactcggtgaaatacctggagtgctcggcccttacccagcgaggcctgaaaaccgtcttt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8164742 gactcggtgaaatacctggagtgctcggcccttacccagcgaggcctgaaaaccgtcttt 8164801
Query: 776 gacgaagcgatccgggccgtcctgtgcccccagcccacgcggccgcagaaacgcccctgc 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8164802 gacgaagcgatccgggccgtcctgtgcccccagcccacgcggccgcagaaacgcccctgc 8164861
Query: 836 agcatcctctagggg 850
|||||||||||||||
Sbjct: 8164862 agcatcctctagggg 8164876
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 376 gtttgacaactattcagccaatgtgatggtggacagcaagcccgtgaacctggggctgtg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8159593 gtttgacaactattcagccaatgtgatggtggacagcaagcccgtgaacctggggctgtg 8159652
Query: 436 ggacacggcggggcaggaggactacgaccgccttcggccgctctcctacccgcagacgg 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8159653 ggacacggcggggcaggaggactacgaccgccttcggccgctctcctacccgcagacgg 8159711
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 196 acagccccggtgcctgcagaagcgctccgcgcccccagctgtcaccaccaccgcctccca 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149610 acagccccggtgcctgcagaagcgctccgcgcccccagctgtcaccaccaccgcctccca 8149669
Query: 256 ggcctcagacgccatgcaggccatcaagtgtgtggtggtgggagatgg 303
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149670 ggcctcagacgccatgcaggccatcaagtgtgtggtggtgggagatgg 8149717
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 303 gagccgtgggcaagacctgccttctcatcagctacaccaccaacgccttcccgggagagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8151786 gagccgtgggcaagacctgccttctcatcagctacaccaccaacgccttcccgggagagt 8151845
Query: 363 acatccccactgtgt 377
|||||||||||||||
Sbjct: 8151846 acatccccactgtgt 8151860
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 64 cagaccgcatgctccgccttctgcaaacggccgcgggggcagcagcttgggtaagttccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149478 cagaccgcatgctccgccttctgcaaacggccgcgggggcagcagcttgggtaagttccc 8149537
Query: 124 cttccgct 131
||||||||
Sbjct: 8149538 cttccgct 8149545
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 ccccttgtccctggagctggaagggcgctgggcgtggagagcagtggcggcgaagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8148549 ccccttgtccctggagctggaagggcgctgggcgtggagagcagtggcggcgaagagaaa 8148608
Query: 61 gagcag 66
||||||
Sbjct: 8148609 gagcag 8148614
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 493 ggacgtcttcctcatctgcttctctcttgtcagcccagcctcctatgagaatgtacgagc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160433 ggacgtcttcctcatctgcttctctcttgtcagcccagcctcctatgagaatgtacgagc 8160492
Query: 553 caag 556
||||
Sbjct: 8160493 caag 8160496
>Sscrofa_Chr09
|| Length = 153670197
Score = 111 bits (56), Expect = 2e-21
Identities = 95/108 (87%)
Strand = Plus / Minus
Query: 277 catcaagtgtgtggtggtgggagatggagccgtgggcaagacctgccttctcatcagcta 336
||||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 7081302 catcaagtgcgtggtggtgggcgatggcgccgtgggcaagacgtgcctgctcatctgcta 7081243
Query: 337 caccaccaacgccttcccgggagagtacatccccactgtgtttgacaa 384
||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 7081242 cacgaccaacgccttccccaaggagtacatccccacagtgttcgacaa 7081195
>Sscrofa_Chr03
|| Length = 144787322
Score = 89.7 bits (45), Expect = 6e-15
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 404 gtggacagcaagcccgtgaacctggggctgtgggacacggcggggcaggaggactacgac 463
|||||| |||||| ||| | |||| |||||||||||| ||||| ||||||||||||||
Sbjct: 125747720 gtggacggcaagcaggtggagctggcgctgtgggacacagcgggccaggaggactacgat 125747661
Query: 464 cgccttcggccgctctcctacccgcagacggacgtcttcctcatctgcttctc 516
||||| |||||||||||||||||| | || ||||| |||| || ||||||||
Sbjct: 125747660 cgcctgcggccgctctcctacccggacaccgacgtgatccttatgtgcttctc 125747608
>gb|GL896504.1| Sus scrofa unplaced genomic scaffold chrU_scaffold838
Length = 72301
Score = 87.7 bits (44), Expect = 2e-14
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 269 atgcaggccatcaagtgtgtggtggtgggagatggagccgtgggcaagacctgccttctc 328
|||||| | ||||| |||||||| ||||| ||||| || || || |||||||| || |||
Sbjct: 7609 atgcagacgatcaaatgtgtggttgtgggggatggggctgtaggtaagacctgtctcctc 7668
Query: 329 atcagctacaccaccaacgccttcccgggagagtacatccccactgtgtttgacaactat 388
||||| |||||||| || ||||| || | ||||| ||||||||||||||||||||||||
Sbjct: 7669 atcagttacaccacaaatgcctttcctgaggagtatatccccactgtgtttgacaactat 7728
>Sscrofa_ChrX
|| Length = 144288218
Score = 87.7 bits (44), Expect = 2e-14
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 269 atgcaggccatcaagtgtgtggtggtgggagatggagccgtgggcaagacctgccttctc 328
|||||| | ||||| |||||||| ||||| ||||| || || || |||||||| || |||
Sbjct: 64781999 atgcagacgatcaaatgtgtggttgtgggggatggggctgtaggtaagacctgtctcctc 64781940
Query: 329 atcagctacaccaccaacgccttcccgggagagtacatccccactgtgtttgacaactat 388
||||| |||||||| || ||||| || | ||||| ||||||||||||||||||||||||
Sbjct: 64781939 atcagttacaccacaaatgcctttcctgaggagtatatccccactgtgtttgacaactat 64781880
>Sscrofa_Chr04
|| Length = 143465943
Score = 75.8 bits (38), Expect = 9e-11
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 431 ctgtgggacacggcggggcaggaggactacgaccgccttcggccgctctcctacccgcag 490
||||||||||| || |||||||| ||||| || ||||| ||||| |||||||||||| |
Sbjct: 117850741 ctgtgggacacagcagggcaggaagactatgatcgcctgcggcctctctcctacccggac 117850682
Query: 491 acggacgtcttcctcatctgcttctc 516
|| |||||| ||||||| ||||||||
Sbjct: 117850681 actgacgtcatcctcatgtgcttctc 117850656
>gb|GL896322.1| Sus scrofa unplaced genomic scaffold chrU_scaffold674
Length = 4182
Score = 73.8 bits (37), Expect = 3e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 728 tacctggagtgctcggcccttacccagcgaggcctgaaaaccgtctttgacgaagcgatc 787
|||||||||||||||||||| |||||||| |||||||| || || |||||||| || |||
Sbjct: 4113 tacctggagtgctcggccctgacccagcggggcctgaagacagtgtttgacgaggccatc 4172
Query: 788 cgggc 792
|||||
Sbjct: 4173 cgggc 4177
>gb|GL895440.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4004
Length = 26690
Score = 61.9 bits (31), Expect = 1e-06
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 638 gacaccatcgagaagctgaaggagaagaagctcgcgcctattacctacccacagggcctg 697
||||| |||||||| ||||||||||||||||| | || || |||||||| |||||| ||
Sbjct: 25040 gacacgatcgagaaactgaaggagaagaagctgactcccatcacctacccgcagggcttg 25099
Query: 698 gcgctggccaaggagatcg 716
|| |||| ||||||||||
Sbjct: 25100 gccatggcgaaggagatcg 25118
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,240,099
Number of extensions: 494
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 17
Length of query: 2073
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2051
Effective length of database: 2,808,408,574
Effective search space: 5760045985274
Effective search space used: 5760045985274
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)