Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029718.1| ribosome biogenesis protein NSA2 homolog [Bo... 502 e-142
Alignment gi|XP_002696670.1| PREDICTED: NSA2 ribosome biogenesis homolog ... 502 e-142
>ref|NP_001029718.1| ribosome biogenesis protein NSA2 homolog [Bos taurus].
Length = 260
Score = 502 bits (1292), Expect = e-142
Identities = 247/260 (95%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
>ref|XP_002696670.1| PREDICTED: NSA2 ribosome biogenesis homolog [Bos taurus].
Length = 260
Score = 502 bits (1292), Expect = e-142
Identities = 247/260 (95%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,455,998
Number of extensions: 1284985
Number of successful extensions: 4037
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4024
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 341
Effective length of database: 14,207,134
Effective search space: 4844632694
Effective search space used: 4844632694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850805.1| PREDICTED: similar to TGF beta-inducible nuclea... 502 e-142
Alignment gi|XP_535277.2| PREDICTED: similar to TGF beta-inducible nuclea... 431 e-120
Alignment gi|XP_862329.1| PREDICTED: similar to TGF beta-inducible nuclea... 431 e-120
Alignment gi|XP_547599.2| PREDICTED: similar to phosphoinositide-3-kinase... 189 7e-48
>ref|XP_850805.1| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (L-name
related LNR42) isoform 2 [Canis familiaris].
Length = 260
Score = 502 bits (1292), Expect = e-142
Identities = 247/260 (95%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
>ref|XP_535277.2| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (Hairy
cell leukemia protein 1) (HUSSY-29) isoform 1 [Canis
familiaris].
Length = 219
Score = 431 bits (1107), Expect = e-120
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +2
Query: 515 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 694
YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
Sbjct: 9 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 68
Query: 695 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 874
RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
Sbjct: 69 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 128
Query: 875 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL 1054
FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL
Sbjct: 129 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL 188
Query: 1055 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV 1147
VTQGGKVIWGKYAQVTNNPENDGCINAVLLV
Sbjct: 189 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV 219
>ref|XP_862329.1| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (Hairy
cell leukemia protein 1) (HUSSY-29) isoform 3 [Canis
familiaris].
Length = 219
Score = 431 bits (1107), Expect = e-120
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +2
Query: 515 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 694
YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK
Sbjct: 9 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 68
Query: 695 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 874
RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER
Sbjct: 69 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 128
Query: 875 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL 1054
FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL
Sbjct: 129 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL 188
Query: 1055 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV 1147
VTQGGKVIWGKYAQVTNNPENDGCINAVLLV
Sbjct: 189 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV 219
>ref|XP_547599.2| PREDICTED: similar to phosphoinositide-3-kinase, class 3 [Canis
familiaris].
Length = 1258
Score = 189 bits (479), Expect = 7e-48
Identities = 95/117 (81%), Positives = 97/117 (82%)
Frame = +2
Query: 362 VTMPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEK 541
VT PQNEYIELHRKRYGY LDYHEKKRKKEG+EAHE S YHK RHAEK
Sbjct: 117 VTRPQNEYIELHRKRYGYSLDYHEKKRKKEGQEAHECSKKAKKMIGLKAKLYHKPRHAEK 176
Query: 542 IQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAG 712
IQMKKTIKMHEKRNTK KNDEKTPQ AVPAYLLDREGQSRAKVLS+MI QKRKEKAG
Sbjct: 177 IQMKKTIKMHEKRNTKPKNDEKTPQRAVPAYLLDREGQSRAKVLSSMITQKRKEKAG 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,580,150
Number of extensions: 1312794
Number of successful extensions: 4195
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4171
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 340
Effective length of database: 15,340,888
Effective search space: 5215901920
Effective search space used: 5215901920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055701.1| ribosome biogenesis protein NSA2 homolog [Homo ... 499 e-141
>ref|NP_055701.1| ribosome biogenesis protein NSA2 homolog [Homo sapiens].
Length = 260
Score = 499 bits (1286), Expect = e-141
Identities = 246/260 (94%), Positives = 246/260 (94%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKE REAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,611,550
Number of extensions: 1286247
Number of successful extensions: 3985
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3979
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 340
Effective length of database: 14,802,980
Effective search space: 5033013200
Effective search space used: 5033013200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_920204.1| PREDICTED: ribosome biogenesis protein NSA2 hom... 500 e-141
Alignment gi|XP_001479584.1| PREDICTED: ribosome biogenesis protein NSA2 ... 500 e-141
Alignment gi|NP_067527.3| ribosome biogenesis protein NSA2 homolog [Mus m... 500 e-141
Alignment gi|XP_484785.1| PREDICTED: ribosome biogenesis protein NSA2 hom... 498 e-141
>ref|XP_920204.1| PREDICTED: ribosome biogenesis protein NSA2 homolog isoform 1 [Mus
musculus].
Length = 260
Score = 500 bits (1287), Expect = e-141
Identities = 246/260 (94%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQK+DEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
>ref|XP_001479584.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Mus musculus].
Length = 260
Score = 500 bits (1287), Expect = e-141
Identities = 246/260 (94%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQK+DEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
>ref|NP_067527.3| ribosome biogenesis protein NSA2 homolog [Mus musculus].
Length = 260
Score = 500 bits (1287), Expect = e-141
Identities = 246/260 (94%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQK+DEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
>ref|XP_484785.1| PREDICTED: ribosome biogenesis protein NSA2 homolog isoform 1 [Mus
musculus].
Length = 260
Score = 498 bits (1283), Expect = e-141
Identities = 245/260 (94%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQK+DEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVS+LGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSKLGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,290,312
Number of extensions: 1095004
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3352
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 341
Effective length of database: 12,463,779
Effective search space: 4250148639
Effective search space used: 4250148639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123751.1| PREDICTED: ribosome biogenesis protein NSA2 ... 502 e-142
>ref|XP_003123751.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Sus scrofa].
Length = 260
Score = 502 bits (1292), Expect = e-142
Identities = 247/260 (95%), Positives = 247/260 (95%)
Frame = +2
Query: 368 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSXXXXXXXXXXXXXYHKQRHAEKIQ 547
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERS YHKQRHAEKIQ
Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60
Query: 548 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 727
MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
Sbjct: 61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120
Query: 728 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 907
LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180
Query: 908 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 1087
AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240
Query: 1088 YAQVTNNPENDGCINAVLLV 1147
YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,366,868
Number of extensions: 848993
Number of successful extensions: 2636
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,804,438
Effective search space: 3028726672
Effective search space used: 3028726672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007534
(1340 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 910 0.0
Sscrofa_Chr02 424 e-116
>Sscrofa_Chr11
|| Length = 87690581
Score = 910 bits (459), Expect = 0.0
Identities = 889/1023 (86%), Gaps = 17/1023 (1%)
Strand = Plus / Minus
Query: 257 gcctttcctgtcgcggccggcgtggagtcggctggtgaatctctgagatccgaaaattaa 316
|||||| |||| | || ||||||||| |||| | ||||||||||||| | |||||||||
Sbjct: 75428202 gccttttctgttgagggcggcgtggactcggatcatgaatctctgagacctgaaaattaa 75428143
Query: 317 gagtttcttctcgtccccgctgctccgccgggtggctcggcggccgtcaccatgccacaa 376
||| |||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 75428142 gagcttcttctcgtgcccgcggctgtgccgggtggctcggcggctgtcaccatgccacaa 75428083
Query: 377 aatgaatatattgagttacaccgtaagcgctatggatatcgtttggattaccatgagaaa 436
|| || || ||| |||||||||||||||| ||||||| ||| ||||| |||| ||||||
Sbjct: 75428082 aacgagcatcttgggttacaccgtaagcgcgatggataccgtctggatgaccacgagaaa 75428023
Query: 437 aagag-gaagaaggaaggtcgagag--gcccatgaacgttcaaagaaggcaaaaaa-gat 492
| ||| |||||||||||| |||||| | ||| || |||| |||||||||||| |||
Sbjct: 75428022 a-gagagaagaaggaaggccgagagaggtttgtgaccggtcaatgaaggcaaaaaaagat 75427964
Query: 493 gattggtctgaaagctaagctctaccataaacagcgccatgctgagaaaatacaaatgaa 552
|| ||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct: 75427963 gactggtctgaaagctaagctccaccataaacagcgccatgctgagaaaagagagatgag 75427904
Query: 553 aaagactattaagatgcatgaaaagagaaacaccaaacagaagaatgatgaaaagactcc 612
| ||||| ||||||| |||||||||||||||||||||| || |||| || ||||||||
Sbjct: 75427903 gagaactatgaagatgcttgaaaagagaaacaccaaacagcaggatgaggagaagactcc 75427844
Query: 613 acaaggcgcagtacctgcatatctactggacagagagggacagtctcgggctaaagtact 672
|||||||| ||| ||||||| |||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 75427843 acaaggcgaagtccctgcatgtctactggacagagagggacagtctcaggctagagtgct 75427784
Query: 673 ttctaatatgattaaacaaaaacgaaaagagaaagcgggaaaatgggaagtccctctgcc 732
|||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct: 75427783 ttctaatatggttaaacaaaaccgaaaagagaaagcaggaaaatgggaagtcccttggcc 75427724
Query: 733 caaagttcgagcccagggagaaacagaagtattaaaagttattcgaacgggaaagagaaa 792
||| ||| | ||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 75427723 caacgtttgtgcccagggagaaagagaagtattcaaagttattcgaacgggaaggagaaa 75427664
Query: 793 gaa----gaaagcctggaaaaggatggtcactaaagtctgctttgttggagacggcttta 848
||| || ||||| ||| |||||||||||| | || ||||||| ||||||| ||||||
Sbjct: 75427663 gaaagacgacagcctcgaagaggatggtcactgaggtgtgctttgctggagac-gcttta 75427605
Query: 849 ctcgaaaaccccctaaatatgaaagattcattaggccaatgggcttacgtttcaagaagg 908
||| |||||| || ||| ||||||| |||||||||||| ||||| |||| ||||| |||
Sbjct: 75427604 ctcaaaaaccacc-caatgtgaaagactcattaggccaacgggctcacgtctcaaggagg 75427546
Query: 909 cccatgtaacacaccctgaactgaaagccaccttttgcctgccaatacttggggtaaaga 968
|||||| |||||||| | ||||||| |||||||||||||| ||||||| |||||||
Sbjct: 75427545 cccatgcaacacacc-----cggaaagccgccttttgcctgccagtacttggtgtaaaga 75427491
Query: 969 agaatccctcttccccactgtatacaactctgggggttatcaccaaaggtactgtcattg 1028
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 75427490 agaatccctcttcgccaccgaatacaactctgggggttatcaccaaaggtactgtcgttg 75427431
Query: 1029 aggtgaacgtgagtgagttgggccttgtgacacaaggaggcaaggtcatatggggaaaat 1088
|||||| | |||| || ||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 75427430 aggtgagcatgagcaagctgggcctcgtgacacaaggaggcaaggtcatctggggaacat 75427371
Query: 1089 atgcccaggttaccaacaatcctgaaaatgatggatgcataaatgcagtc-ttactggtt 1147
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 75427370 atgcccaggttaccaacaatcctgaaaatgatggatgcataaatgcagtcataactggtt 75427311
Query: 1148 tgacagcaattgaatatagacaactgcttgtaattaatgaagactacacaccatcagcaa 1207
||||||||||| || |||||||||| | |||||| ||| |||||||||||||||||||
Sbjct: 75427310 tgacagcaattacttacagacaactgcgtataattactgaggactacacaccatcagcaa 75427251
Query: 1208 actattagtctcatgtttctgaatcctaacagtcagccttttcagtctgctgtcatcaag 1267
|| |||||||| ||| |||||||| ||| || |||||||| |||||||||||||||||
Sbjct: 75427250 accattagtctgatggttctgaatactaccaatcagccttacaagtctgctgtcatcaag 75427191
Query: 1268 aaa 1270
|||
Sbjct: 75427190 aaa 75427188
Score = 896 bits (452), Expect = 0.0
Identities = 889/1024 (86%), Gaps = 18/1024 (1%)
Strand = Plus / Minus
Query: 257 gcctttcctgtcgcggccggcgtggagtcggctggtgaatctctgagatccgaaaattaa 316
|||||| |||| | || ||||||||| |||| | ||||||||||||| | |||||||||
Sbjct: 75454190 gccttttctgttgagggcggcgtggactcggatcatgaatctctgagacctgaaaattaa 75454131
Query: 317 gagtttcttctcgtccccgctgctccgccgggtggctcggcggccgtcaccatgccacaa 376
||| |||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 75454130 gagcttcttctcgtgcccgcggctgtgccgggtggctcggcggctgtcaccatgccacaa 75454071
Query: 377 aatgaatatattgagttacaccgtaagcgctatggatatcgtttggattaccatgagaaa 436
|| || || ||| |||||||||||||||| ||||||| ||| ||||| |||| ||||||
Sbjct: 75454070 aacgagcatcttgggttacaccgtaagcgcgatggataccgtctggatgaccacgagaaa 75454011
Query: 437 aagag-gaagaaggaaggtcgagag--gcccatgaacgttcaaagaaggcaaaaaa-gat 492
| ||| |||||||||||| |||||| | ||| || |||| |||||||||||| |||
Sbjct: 75454010 a-gagagaagaaggaaggccgagagaggtttgtgaccggtcaatgaaggcaaaaaaagat 75453952
Query: 493 gattggtctgaaagctaagctctaccataaacagcgccatgctgagaaaatacaaatgaa 552
|| ||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct: 75453951 gactggtctgaaagctaagctccaccataaacagcgccatgctgagaaaagagagatgag 75453892
Query: 553 aaagactattaagatgcatgaaaagagaaacaccaaacagaagaatgatgaaaagactcc 612
| ||||| ||||||| |||||||||||||||||||||| || |||| || ||||||||
Sbjct: 75453891 gagaactatgaagatgcttgaaaagagaaacaccaaacagcaggatgaggagaagactcc 75453832
Query: 613 acaaggcgcagtacctgcatatctactggacagagagggacagtctcgggctaaagtact 672
|||||||| ||| ||||||| |||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 75453831 acaaggcgaagtccctgcatgtctactggacagagagggacagtctcaggctagagtgct 75453772
Query: 673 ttctaatatgattaaacaaaaacgaaaagagaaagcgggaaaatgggaagtccctctgcc 732
|||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct: 75453771 ttctaatatggttaaacaaaaccgaaaagagaaagcaggaaaatgggaagtcccttggcc 75453712
Query: 733 caaagttcgagcccagggagaaacagaagtattaaaagttattcgaacgggaaagagaaa 792
||| ||| | ||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 75453711 caacgtttgtgcccagggagaaagagaagtattcaaagttattcgaacgggaaggagaaa 75453652
Query: 793 gaa----gaaagcctggaaaaggatggtcactaaagtctgctttgttggagacggcttta 848
||| || ||||| ||| |||||||||||| | || ||||||| ||||||| ||||||
Sbjct: 75453651 gaaagacgacagcctcgaagaggatggtcactgaggtgtgctttgctggagac-gcttta 75453593
Query: 849 ctcgaaaaccccctaaatatgaaagattcattaggccaatgggcttacgtttcaagaagg 908
||| |||||| || ||| ||||||| |||||||||||| ||||| |||| ||||| |||
Sbjct: 75453592 ctcaaaaaccacc-caatgtgaaagactcattaggccaacgggctcacgtctcaaggagg 75453534
Query: 909 cccatgtaacacaccctgaactgaaagccaccttttgcctgccaatacttggggtaaaga 968
|||||| |||||||| | ||||||| |||||||||||||| ||||||| |||||||
Sbjct: 75453533 cccatgcaacacacc-----cggaaagccgccttttgcctgccagtacttggtgtaaaga 75453479
Query: 969 agaatccctcttccccactgtatacaactctgggggttatcaccaaaggtactgtcattg 1028
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 75453478 agaatccctcttcgccaccgaatacaactctgggggttatcaccaaaggtactgtcgttg 75453419
Query: 1029 aggtgaacgtgagtgagttgggccttgtgacacaaggaggcaaggtcatatggggaaaat 1088
|||||| | |||| || ||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 75453418 aggtgagcatgagcaagctgggcctcgtgacacaaggaggcaaggtcatctggggaacat 75453359
Query: 1089 atgcc-caggttaccaacaatcctgaaaatgatggatgcataaatgcagtc-ttactggt 1146
||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 75453358 atgcctcaggttaccaacaatcctgaaaatgatggatgcataaatgcagtcataactggt 75453299
Query: 1147 ttgacagcaattgaatatagacaactgcttgtaattaatgaagactacacaccatcagca 1206
|||||||||||| || |||||||||| | |||||| ||| ||||||||||||||||||
Sbjct: 75453298 ttgacagcaattacttacagacaactgcgtataattactgaggactacacaccatcagca 75453239
Query: 1207 aactattagtctcatgtttctgaatcctaacagtcagccttttcagtctgctgtcatcaa 1266
||| |||||||| ||| |||||||| ||| || |||||||| ||||||||||||||||
Sbjct: 75453238 aaccattagtctgatggttctgaatactaccaatcagccttacaagtctgctgtcatcaa 75453179
Query: 1267 gaaa 1270
||||
Sbjct: 75453178 gaaa 75453175
>Sscrofa_Chr02
|| Length = 162569375
Score = 424 bits (214), Expect = e-116
Identities = 230/234 (98%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 1082 ggaaaatatgcccaggttaccaacaatcctgaaaatgatggatgcataaatgcagtctta 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85436477 ggaaaatatgcccaggttaccaacaatcctgaaaatgatggatgcataaatgcagtctta 85436536
Query: 1142 ctggtttgacagcaattgaatatagacaactgcttgtaattaatgaagactacacaccat 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85436537 ctggtttgacagcaattgaatatagacaactgcttgtaattaatgaagactacacaccat 85436596
Query: 1202 cagcaaactattagtctcatgtttctgaatcctaacagtcagccttttcagtctgctgtc 1261
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 85436597 cagcaaactattagtctcatgtttctgaatcctaccagtcagcctttcaagtctgctgtc 85436656
Query: 1262 atcaagaaaactatttattgtttacaaaaaaaaa-taaaacagcctcgttttac 1314
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85436657 atcaagaaaactatttattgtttacaaaaaaaaattaaaacagcctcgttttac 85436710
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 889 gggcttacgtttcaagaaggcccatgtaacacaccctgaactgaaagccaccttttgcct 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85435397 gggcttacgtttcaagaaggcccatgtaacacaccctgaactgaaagccaccttttgcct 85435456
Query: 949 gccaatacttggggtaaagaagaatccctcttccccactgtatacaactctgggggttat 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85435457 gccaatacttggggtaaagaagaatccctcttccccactgtatacaactctgggggttat 85435516
Query: 1009 caccaaaggtactgtcattgaggtgaacgtgagtgagttgggccttgtgacacaaggagg 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85435517 caccaaaggtactgtcattgaggtgaacgtgagtgagttgggccttgtgacacaaggagg 85435576
Query: 1069 caaggtcatatgggg 1083
|||||||||||||||
Sbjct: 85435577 caaggtcatatgggg 85435591
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 370 gccacaaaatgaatatattgagttacaccgtaagcgctatggatatcgtttggattacca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85431134 gccacaaaatgaatatattgagttacaccgtaagcgctatggatatcgtttggattacca 85431193
Query: 430 tgagaaaaagaggaagaaggaaggtcgagaggcccatgaacgttcaaagaaggcaaaaaa 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85431194 tgagaaaaagaggaagaaggaaggtcgagaggcccatgaacgttcaaagaaggcaaaaaa 85431253
Query: 490 gatgattggtctgaaagctaagctctaccataaacagcgccatgctgagaaaatacaaat 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85431254 gatgattggtctgaaagctaagctctaccataaacagcgccatgctgagaaaatacaaat 85431313
Query: 550 gaaaaagac 558
|||||||||
Sbjct: 85431314 gaaaaagac 85431322
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 709 gggaaaatgggaagtccctctgcccaaagttcgagcccagggagaaacagaagtattaaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85433406 gggaaaatgggaagtccctctgcccaaagttcgagcccagggagaaacagaagtattaaa 85433465
Query: 769 agttattcgaacgggaaagagaaagaagaaagcctggaaaaggatggtcactaaagtctg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85433466 agttattcgaacgggaaagagaaagaagaaagcctggaaaaggatggtcactaaagtctg 85433525
Query: 829 ctttgttggagacggctttactcgaaaaccccctaaatatgaaagattcattaggccaat 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85433526 ctttgttggagacggctttactcgaaaaccccctaaatatgaaagattcattaggccaat 85433585
Query: 889 gg 890
||
Sbjct: 85433586 gg 85433587
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 559 tattaagatgcatgaaaagagaaacaccaaacagaagaatgatgaaaagactccacaagg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85431415 tattaagatgcatgaaaagagaaacaccaaacagaagaatgatgaaaagactccacaagg 85431474
Query: 619 cgcagtacctgcatatctactggacagagagggacagtctcgggctaaagtactttctaa 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85431475 cgcagtacctgcatatctactggacagagagggacagtctcgggctaaagtactttctaa 85431534
Query: 679 tatgattaaacaaaaacgaaaagagaaagcgg 710
||||||||||||||||||||||||||||||||
Sbjct: 85431535 tatgattaaacaaaaacgaaaagagaaagcgg 85431566
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 258 cctttcctgtcgcggccggcgtggagtcggctggtgaatctctgagatccgaaaattaag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85429447 cctttcctgtcgcggccggcgtggagtcggctggtgaatctctgagatccgaaaattaag 85429506
Query: 318 agtttcttctcgtccccgctgctccgccgggtggctcggcggccgtcaccatg 370
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Sbjct: 85429507 agtttcttctcgtccccgctgctccgccgggtggctcggcggccgtcaccatg 85429559
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,214,686
Number of extensions: 540
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 10
Length of query: 1340
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1319
Effective length of database: 2,808,413,156
Effective search space: 3704296952764
Effective search space used: 3704296952764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)