Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus]. 388 e-129
Alignment gi|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos t... 275 3e-85
Alignment gi|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14... 275 3e-85
Alignment gi|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing... 238 6e-75
Alignment gi|NP_001179692.1| probable palmitoyltransferase ZDHHC5 [Bos ta... 147 2e-35
Alignment gi|XP_002683803.1| PREDICTED: zinc finger, DHHC domain containi... 147 2e-35
Alignment gi|NP_001069139.1| probable palmitoyltransferase ZDHHC19 [Bos t... 103 2e-22
Alignment gi|XP_002684846.1| PREDICTED: zinc finger, DHHC-type containing... 103 2e-22
Alignment gi|XP_001787486.1| PREDICTED: zinc finger, DHHC-type containing... 103 2e-22
Alignment gi|NP_001075003.1| probable palmitoyltransferase ZDHHC21 [Bos t... 75 1e-13
>ref|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus].
Length = 363
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos taurus].
Length = 488
Score = 275 bits (703), Expect(2) = 3e-85
Identities = 129/196 (65%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +1
Query: 412 RKKVT--RKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQL 585
+KK+ RKWE PGRN F C+GR+MMARQ G+FYLTL LIL T LFFAF+C YLAV++
Sbjct: 31 KKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFDCPYLAVKI 90
Query: 586 SPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPP 765
+PAIPV +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG G RPPP
Sbjct: 91 TPAIPVVGGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPP 150
Query: 766 RIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXX 945
R K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCVGKRNYR
Sbjct: 151 RTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFF 210
Query: 946 XXXXXXXXXXXXYVFA 993
++FA
Sbjct: 211 YMFILSLSFLTVFIFA 226
Score = 59.7 bits (143), Expect(2) = 3e-85
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK++P +VLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 229 ITHVILRSQQAGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSN 279
>ref|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14 isoform 2 [Bos
taurus].
Length = 473
Score = 275 bits (703), Expect(2) = 3e-85
Identities = 129/196 (65%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +1
Query: 412 RKKVT--RKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQL 585
+KK+ RKWE PGRN F C+GR+MMARQ G+FYLTL LIL T LFFAF+C YLAV++
Sbjct: 31 KKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFDCPYLAVKI 90
Query: 586 SPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPP 765
+PAIPV +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG G RPPP
Sbjct: 91 TPAIPVVGGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPP 150
Query: 766 RIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXX 945
R K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCVGKRNYR
Sbjct: 151 RTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFF 210
Query: 946 XXXXXXXXXXXXYVFA 993
++FA
Sbjct: 211 YMFILSLSFLTVFIFA 226
Score = 59.7 bits (143), Expect(2) = 3e-85
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK++P +VLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 229 ITHVILRSQQAGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSN 279
>ref|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing 18-like [Bos taurus].
Length = 430
Score = 238 bits (607), Expect(2) = 6e-75
Identities = 110/193 (56%), Positives = 136/193 (70%)
Frame = +1
Query: 415 KKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPA 594
++ RKWE PGRN F C GR+M+A G+F LTL LIL T LFF F+C +LA L+ A
Sbjct: 79 RRPRRKWEVFPGRNRFYCGGRLMLAGHGGVFALTLLLILTTTVLFFVFDCPFLARHLTLA 138
Query: 595 IPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIK 774
IP+ AA+LF F M+ LL+TSF+DPG++PRA EAA +E +I+ T + RPPPR +
Sbjct: 139 IPIIAAILFFFVMSCLLQTSFTDPGILPRATVCEAAALEKQIDNTGSST---YRPPPRTR 195
Query: 775 NFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXXXXX 954
IN Q+VKLKYC+TCK+FRPPR SHCS+CDNCVERFDHHCPWVGNCVGKRNYR
Sbjct: 196 EVMINGQVVKLKYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGKRNYRFFYAF 255
Query: 955 XXXXXXXXXYVFA 993
++FA
Sbjct: 256 ILSLSFLTAFIFA 268
Score = 62.4 bits (150), Expect(2) = 6e-75
Identities = 27/51 (52%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
+ ++ L+S FL TLKETP +VLE++ICFF++WS+ GL+GF +LVA N
Sbjct: 271 VTHLTLRSQGSNFLSTLKETPASVLELVICFFSIWSILGLSGFHTYLVASN 321
>ref|NP_001179692.1| probable palmitoyltransferase ZDHHC5 [Bos taurus].
Length = 714
Score = 147 bits (371), Expect = 2e-35
Identities = 68/138 (49%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+PV+ A++FLF +A +F DPGV PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLSVSPAVPVYNAVVFLFVLANFSMATFMDPGVFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
>ref|XP_002683803.1| PREDICTED: zinc finger, DHHC domain containing 5-like [Bos taurus].
Length = 714
Score = 147 bits (371), Expect = 2e-35
Identities = 68/138 (49%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+PV+ A++FLF +A +F DPGV PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLSVSPAVPVYNAVVFLFVLANFSMATFMDPGVFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
>ref|NP_001069139.1| probable palmitoyltransferase ZDHHC19 [Bos taurus].
Length = 365
Score = 103 bits (258), Expect = 2e-22
Identities = 51/132 (38%), Positives = 72/132 (54%)
Frame = +1
Query: 544 LFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIE 723
LFFAF CR+LA A PV +LF+ + +L+ +FSDPG++ +
Sbjct: 44 LFFAFPCRWLAQNGEWAFPVITGLLFILTFFSLISLNFSDPGILHQ-------------- 89
Query: 724 ATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCP 903
G+ QG P + +N++ +L++C C RPPR HC C+ CVE FDHHC
Sbjct: 90 ---GSNEQG---PLMVHVVWVNHRAFRLQWCQKCCFHRPPRTYHCPWCNICVEDFDHHCK 143
Query: 904 WVGNCVGKRNYR 939
WV NC+G RN+R
Sbjct: 144 WVNNCIGHRNFR 155
>ref|XP_002684846.1| PREDICTED: zinc finger, DHHC-type containing 19 [Bos taurus].
Length = 365
Score = 103 bits (258), Expect = 2e-22
Identities = 51/132 (38%), Positives = 72/132 (54%)
Frame = +1
Query: 544 LFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIE 723
LFFAF CR+LA A PV +LF+ + +L+ +FSDPG++ +
Sbjct: 44 LFFAFPCRWLAQNGEWAFPVITGLLFILTFFSLISLNFSDPGILHQ-------------- 89
Query: 724 ATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCP 903
G+ QG P + +N++ +L++C C RPPR HC C+ CVE FDHHC
Sbjct: 90 ---GSNEQG---PLMVHVVWVNHRAFRLQWCQKCCFHRPPRTYHCPWCNICVEDFDHHCK 143
Query: 904 WVGNCVGKRNYR 939
WV NC+G RN+R
Sbjct: 144 WVNNCIGHRNFR 155
>ref|XP_001787486.1| PREDICTED: zinc finger, DHHC-type containing 19 [Bos taurus].
Length = 365
Score = 103 bits (258), Expect = 2e-22
Identities = 51/132 (38%), Positives = 72/132 (54%)
Frame = +1
Query: 544 LFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIE 723
LFFAF CR+LA A PV +LF+ + +L+ +FSDPG++ +
Sbjct: 44 LFFAFPCRWLAQNGEWAFPVITGLLFILTFFSLISLNFSDPGILHQ-------------- 89
Query: 724 ATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCP 903
G+ QG P + +N++ +L++C C RPPR HC C+ CVE FDHHC
Sbjct: 90 ---GSNEQG---PLMVHVVWVNHRAFRLQWCQKCCFHRPPRTYHCPWCNICVEDFDHHCK 143
Query: 904 WVGNCVGKRNYR 939
WV NC+G RN+R
Sbjct: 144 WVNNCIGHRNFR 155
>ref|NP_001075003.1| probable palmitoyltransferase ZDHHC21 [Bos taurus].
Length = 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/159 (28%), Positives = 71/159 (44%)
Frame = +1
Query: 460 FCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMAT 639
+CC G ++ +L F ++ LF +E ++ L I +F + +F +
Sbjct: 14 WCCMGLIVFV------WLYNFFLIPKIVLFPHYEEGHIPGIL---IIIFYGIA-MFCLVA 63
Query: 640 LLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCY 819
L+R S +DPG +P N +P G+R + C
Sbjct: 64 LVRASITDPGRLPE----------------NPKIPHGERE--------------FWELCN 93
Query: 820 TCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNY 936
C + RP R+ HCS C +CV R DHHCPW+ NCVG+ N+
Sbjct: 94 KCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVGEDNH 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,652,176
Number of extensions: 1331813
Number of successful extensions: 6219
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 6176
Number of HSP's successfully gapped: 40
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain c... 388 e-129
Alignment gi|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain c... 357 e-120
Alignment gi|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain c... 388 e-117
Alignment gi|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain c... 388 e-115
Alignment gi|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain c... 388 e-108
Alignment gi|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain c... 388 e-108
Alignment gi|XP_865624.1| PREDICTED: similar to Zinc finger DHHC domain c... 338 7e-93
Alignment gi|XP_854971.1| PREDICTED: similar to NEW1 domain containing pr... 208 3e-65
Alignment gi|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain c... 187 8e-60
Alignment gi|NP_001041570.1| probable palmitoyltransferase ZDHHC5 [Canis ... 145 7e-35
>ref|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 2 [Canis familiaris].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 7 [Canis familiaris].
Length = 361
Score = 357 bits (916), Expect(2) = e-120
Identities = 175/200 (87%), Positives = 175/200 (87%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEI
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEI---GDEFLSTY 117
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 118 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 177
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 178 YRYFYLFILSLSLLTIYVFA 197
Score = 94.4 bits (233), Expect(2) = e-120
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 200 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 250
>ref|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 4 [Canis familiaris].
Length = 365
Score = 388 bits (996), Expect(2) = e-117
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 53.1 bits (126), Expect(2) = e-117
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +3
Query: 1065 TVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
TVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 226 TVLEVLICFFTLWSVVGLTGFHTFLVALN 254
>ref|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 1 [Canis familiaris].
Length = 335
Score = 388 bits (996), Expect(2) = e-115
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 47.8 bits (112), Expect(2) = e-115
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGT 1067
IVYVALKSLKIGFLETLKETPGT
Sbjct: 203 IVYVALKSLKIGFLETLKETPGT 225
>ref|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 6 [Canis familiaris].
Length = 381
Score = 388 bits (996), Expect = e-108
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3
Query: 1068 VLEVLICFFTLWSLRGLTGFKLFLVALN 1151
VLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 243 VLEVLICFFTLWSVVGLTGFHTFLVALN 270
>ref|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 5 [Canis familiaris].
Length = 311
Score = 388 bits (996), Expect = e-108
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
>ref|XP_865624.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 3 [Canis familiaris].
Length = 318
Score = 338 bits (866), Expect = 7e-93
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 163
Score = 82.8 bits (203), Expect = 6e-16
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3
Query: 1014 LKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
++SLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 162 VESLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 207
>ref|XP_854971.1| PREDICTED: similar to NEW1 domain containing protein isoform 1
[Canis familiaris].
Length = 420
Score = 208 bits (530), Expect(2) = 3e-65
Identities = 95/144 (65%), Positives = 107/144 (74%)
Frame = +1
Query: 562 CRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAV 741
C YLAV+++PAIPV +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG
Sbjct: 15 CPYLAVKITPAIPVVGGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTS 74
Query: 742 PQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCV 921
G RPPPR K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCV
Sbjct: 75 SGGYRPPPRTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCV 134
Query: 922 GKRNYRXXXXXXXXXXXXXXYVFA 993
GKRNYR ++FA
Sbjct: 135 GKRNYRFFYMFILSLSFLTVFIFA 158
Score = 59.7 bits (143), Expect(2) = 3e-65
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK++P +VLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 161 ITHVILRSQQTGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSN 211
>ref|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 18
[Canis familiaris].
Length = 293
Score = 187 bits (476), Expect(2) = 8e-60
Identities = 84/144 (58%), Positives = 103/144 (71%)
Frame = +1
Query: 562 CRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAV 741
C +LA QL+ AIP+ AA+LF F M+ LL+TSF+DPG++PRA EAA +E +IE N
Sbjct: 7 CPFLARQLTLAIPIIAAILFFFVMSCLLQTSFTDPGILPRATVCEAAALEKQIEVENNTG 66
Query: 742 PQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCV 921
RPPPR + IN Q+VKLKYC+TCK+FRPPR SHCS+CDNCVERFDHHCPWVGNCV
Sbjct: 67 SSTYRPPPRTREVMINGQMVKLKYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCV 126
Query: 922 GKRNYRXXXXXXXXXXXXXXYVFA 993
G+RNYR ++FA
Sbjct: 127 GRRNYRFFYAFILSLSFLTAFIFA 150
Score = 62.4 bits (150), Expect(2) = 8e-60
Identities = 27/51 (52%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
+ ++ L+S FL TLKETP +VLE++ICFF++WS+ GL+GF +LVA N
Sbjct: 153 VTHLTLRSQGSNFLSTLKETPASVLELVICFFSIWSILGLSGFHTYLVASN 203
>ref|NP_001041570.1| probable palmitoyltransferase ZDHHC5 [Canis lupus familiaris].
Length = 715
Score = 145 bits (366), Expect = 7e-35
Identities = 66/138 (47%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+P++ A++FLF +A +F DPG+ PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLCVSPAVPIYNAIVFLFVLANFSMATFMDPGIFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,726,356
Number of extensions: 1385007
Number of successful extensions: 6501
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 6465
Number of HSP's successfully gapped: 46
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens]. 388 e-129
Alignment gi|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens]. 388 e-129
Alignment gi|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1... 275 3e-85
Alignment gi|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2... 275 3e-85
Alignment gi|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens]. 236 4e-74
Alignment gi|NP_056272.2| probable palmitoyltransferase ZDHHC5 [Homo sapi... 146 3e-35
Alignment gi|NP_001171953.1| probable palmitoyltransferase ZDHHC8 isoform... 145 9e-35
Alignment gi|NP_037505.1| probable palmitoyltransferase ZDHHC8 isoform 2 ... 145 9e-35
Alignment gi|NP_001034706.1| probable palmitoyltransferase ZDHHC19 [Homo ... 101 1e-21
Alignment gi|NP_001139020.1| palmitoyltransferase ZDHHC7 isoform 1 [Homo ... 75 1e-13
>ref|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1 [Homo sapiens].
Length = 488
Score = 275 bits (703), Expect(2) = 3e-85
Identities = 129/196 (65%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +1
Query: 412 RKKVT--RKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQL 585
+KK+ RKWE PGRN F C+GR+MMARQ G+FYLTL LIL T LFFAF+C YLAV++
Sbjct: 31 KKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFDCPYLAVKI 90
Query: 586 SPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPP 765
+PAIP A +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG G RPPP
Sbjct: 91 TPAIPAVAGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPP 150
Query: 766 RIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXX 945
R K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCVGKRNYR
Sbjct: 151 RTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFF 210
Query: 946 XXXXXXXXXXXXYVFA 993
++FA
Sbjct: 211 YMFILSLSFLTVFIFA 226
Score = 59.7 bits (143), Expect(2) = 3e-85
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK++P +VLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 229 ITHVILRSQQTGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSN 279
>ref|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2 [Homo sapiens].
Length = 473
Score = 275 bits (703), Expect(2) = 3e-85
Identities = 129/196 (65%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +1
Query: 412 RKKVT--RKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQL 585
+KK+ RKWE PGRN F C+GR+MMARQ G+FYLTL LIL T LFFAF+C YLAV++
Sbjct: 31 KKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFDCPYLAVKI 90
Query: 586 SPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPP 765
+PAIP A +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG G RPPP
Sbjct: 91 TPAIPAVAGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPP 150
Query: 766 RIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXX 945
R K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCVGKRNYR
Sbjct: 151 RTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFF 210
Query: 946 XXXXXXXXXXXXYVFA 993
++FA
Sbjct: 211 YMFILSLSFLTVFIFA 226
Score = 59.7 bits (143), Expect(2) = 3e-85
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK++P +VLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 229 ITHVILRSQQTGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSN 279
>ref|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens].
Length = 388
Score = 236 bits (603), Expect(2) = 4e-74
Identities = 110/193 (56%), Positives = 137/193 (70%)
Frame = +1
Query: 415 KKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPA 594
++ RKWE PGRN F C GR+M+A G+F LTL LIL T LFF F+C YLA +L+ A
Sbjct: 64 RRPRRKWEVFPGRNRFYCGGRLMLAGHGGVFALTLLLILTTTGLFFVFDCPYLARKLTLA 123
Query: 595 IPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIK 774
IP+ AA+LF F M+ LL+TSF+DPG++PRA EAA +E +I+ T + RPPPR +
Sbjct: 124 IPIIAAILFFFVMSCLLQTSFTDPGILPRATVCEAAALEKQIDNTGSST---YRPPPRTR 180
Query: 775 NFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXXXXX 954
IN Q+VKLKYC+TCK+FRPPR SHCS+CDNCVERFDHHCPWVGNCVG+RNYR
Sbjct: 181 EVLINGQMVKLKYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGRRNYRFFYAF 240
Query: 955 XXXXXXXXXYVFA 993
++FA
Sbjct: 241 ILSLSFLTAFIFA 253
Score = 61.2 bits (147), Expect(2) = 4e-74
Identities = 26/51 (50%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
+ ++ L++ FL TLKETP +VLE++ICFF++WS+ GL+GF +LVA N
Sbjct: 256 VTHLTLRAQGSNFLSTLKETPASVLELVICFFSIWSILGLSGFHTYLVASN 306
>ref|NP_056272.2| probable palmitoyltransferase ZDHHC5 [Homo sapiens].
Length = 715
Score = 146 bits (369), Expect = 3e-35
Identities = 66/138 (47%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+P++ A++FLF +A +F DPG+ PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLYVSPAVPIYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
>ref|NP_001171953.1| probable palmitoyltransferase ZDHHC8 isoform 1 [Homo sapiens].
Length = 778
Score = 145 bits (365), Expect = 9e-35
Identities = 67/139 (48%), Positives = 87/139 (62%)
Frame = +1
Query: 523 LILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAA 702
L++G+ TLFF F C +L +SPA+PV+ ++FLF +A +F DPGV PRA DE
Sbjct: 23 LLVGSSTLFFVFTCPWLTRAVSPAVPVYNGIIFLFVLANFSMATFMDPGVFPRADEDEDK 82
Query: 703 FIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
E + A P KN + V++K+C TC +RPPR SHCS+CDNCVE
Sbjct: 83 --EDDFRA------------PLYKNVDVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVE 128
Query: 883 RFDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 129 DFDHHCPWVNNCIGRRNYR 147
>ref|NP_037505.1| probable palmitoyltransferase ZDHHC8 isoform 2 [Homo sapiens].
Length = 765
Score = 145 bits (365), Expect = 9e-35
Identities = 67/139 (48%), Positives = 87/139 (62%)
Frame = +1
Query: 523 LILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAA 702
L++G+ TLFF F C +L +SPA+PV+ ++FLF +A +F DPGV PRA DE
Sbjct: 23 LLVGSSTLFFVFTCPWLTRAVSPAVPVYNGIIFLFVLANFSMATFMDPGVFPRADEDEDK 82
Query: 703 FIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
E + A P KN + V++K+C TC +RPPR SHCS+CDNCVE
Sbjct: 83 --EDDFRA------------PLYKNVDVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVE 128
Query: 883 RFDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 129 DFDHHCPWVNNCIGRRNYR 147
>ref|NP_001034706.1| probable palmitoyltransferase ZDHHC19 [Homo sapiens].
Length = 309
Score = 101 bits (251), Expect = 1e-21
Identities = 51/132 (38%), Positives = 70/132 (53%)
Frame = +1
Query: 544 LFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIE 723
LFFAF CR+LA A PV LF+ + +L+ +FSDPG++ +
Sbjct: 44 LFFAFPCRWLAQNGEWAFPVITGSLFVLTFFSLVSLNFSDPGILHQ-------------- 89
Query: 724 ATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCP 903
G+ QG P + +N+ +L++C C RPPR HC C+ CVE FDHHC
Sbjct: 90 ---GSAEQG---PLTVHVVWVNHGAFRLQWCPKCCFHRPPRTYHCPWCNICVEDFDHHCK 143
Query: 904 WVGNCVGKRNYR 939
WV NC+G RN+R
Sbjct: 144 WVNNCIGHRNFR 155
>ref|NP_001139020.1| palmitoyltransferase ZDHHC7 isoform 1 [Homo sapiens].
Length = 345
Score = 74.7 bits (182), Expect = 1e-13
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1
Query: 733 GAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVG 912
GAVP+G +++ Q+ V K C C +P RA HCSIC C+ + DHHCPWV
Sbjct: 143 GAVPKGNATKEYMESLQLKPGEVIYK-CPKCCCIKPERAHHCSICKRCIRKMDHHCPWVN 201
Query: 913 NCVGKRNYR 939
NCVG++N R
Sbjct: 202 NCVGEKNQR 210
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,597,060
Number of extensions: 1338657
Number of successful extensions: 5826
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 5769
Number of HSP's successfully gapped: 42
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus]. 388 e-129
Alignment gi|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musc... 275 2e-84
Alignment gi|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus]. 236 5e-73
Alignment gi|NP_659136.1| probable palmitoyltransferase ZDHHC5 [Mus muscu... 147 2e-35
Alignment gi|NP_742163.4| probable palmitoyltransferase ZDHHC8 [Mus muscu... 146 3e-35
Alignment gi|NP_955013.1| probable palmitoyltransferase ZDHHC19 [Mus musc... 101 1e-21
Alignment gi|NP_001032851.1| probable palmitoyltransferase ZDHHC12 isofor... 77 3e-14
Alignment gi|NP_079704.2| probable palmitoyltransferase ZDHHC12 isoform a... 77 3e-14
Alignment gi|NP_598728.1| palmitoyltransferase ZDHHC7 [Mus musculus]. 75 1e-13
Alignment gi|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musc... 74 2e-13
>ref|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musculus].
Length = 489
Score = 275 bits (702), Expect(2) = 2e-84
Identities = 128/196 (65%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +1
Query: 412 RKKVT--RKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQL 585
+KK+ RKWE PGRN F C+GR+MMARQ G+FYLTL LIL T LFFAF+CRYLA ++
Sbjct: 31 KKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLILILVTSGLFFAFDCRYLAEKI 90
Query: 586 SPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPP 765
+PAIPV +LF F M TLLRTSFSDPGV+PRA PDEAA +E +I+ NG G RPPP
Sbjct: 91 TPAIPVVGGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPP 150
Query: 766 RIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXX 945
R K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVE+FDHHCPWVGNCVGKRNYR
Sbjct: 151 RTKEVVINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVEQFDHHCPWVGNCVGKRNYRFF 210
Query: 946 XXXXXXXXXXXXYVFA 993
++FA
Sbjct: 211 YMFILSLSFLTVFIFA 226
Score = 57.4 bits (137), Expect(2) = 2e-84
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V +S + GFL+ LK++P +VLE +ICFF++WS+ GL+GF +L++ N
Sbjct: 229 ITHVIHRSQQKGFLDALKDSPASVLEAVICFFSVWSIIGLSGFHTYLISSN 279
>ref|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus].
Length = 380
Score = 236 bits (603), Expect(2) = 5e-73
Identities = 110/193 (56%), Positives = 135/193 (69%)
Frame = +1
Query: 415 KKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPA 594
++ RKWE PGRN F C GR+M+A G+F LTL LIL T LFF F+C YLA L+ A
Sbjct: 56 RRPRRKWEVFPGRNRFYCGGRLMLAGHGGVFALTLLLILSTTILFFVFDCPYLARTLTLA 115
Query: 595 IPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIK 774
IP+ AA+LF F M+ LL+TSF+DPG++PRA EAA +E +I+ T + RPPPR +
Sbjct: 116 IPIIAAILFFFVMSCLLQTSFTDPGILPRATICEAAALEKQIDNTGSST---YRPPPRTR 172
Query: 775 NFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXXXXX 954
IN Q VKLKYC+TCK+FRPPR SHCS+CDNCVERFDHHCPWVGNCVG+RNYR
Sbjct: 173 EVMINGQTVKLKYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGRRNYRFFYAF 232
Query: 955 XXXXXXXXXYVFA 993
++FA
Sbjct: 233 ILSLSFLTAFIFA 245
Score = 57.4 bits (137), Expect(2) = 5e-73
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
+ ++ L S FL LK+TP +VLE++ICFF++WS+ GL+GF +LVA N
Sbjct: 248 VTHLTLLSQGSNFLSALKKTPASVLELVICFFSIWSILGLSGFHTYLVASN 298
>ref|NP_659136.1| probable palmitoyltransferase ZDHHC5 [Mus musculus].
Length = 715
Score = 147 bits (370), Expect = 2e-35
Identities = 66/138 (47%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+P++ A++FLF +A +F DPG+ PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLNVSPAVPIYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
>ref|NP_742163.4| probable palmitoyltransferase ZDHHC8 [Mus musculus].
Length = 762
Score = 146 bits (368), Expect = 3e-35
Identities = 69/139 (49%), Positives = 87/139 (62%)
Frame = +1
Query: 523 LILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAA 702
L++G+ TLFF F C +L +SPAIPV+ +LFLF +A +F DPGV PRA DE
Sbjct: 23 LLVGSSTLFFVFTCPWLTRAVSPAIPVYNGILFLFVLANFSMATFMDPGVFPRADEDEDK 82
Query: 703 FIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
E + A P KN + V++K+C TC +RPPR SHCS+CDNCVE
Sbjct: 83 --EDDFRA------------PLYKNVDVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVE 128
Query: 883 RFDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 129 DFDHHCPWVNNCIGRRNYR 147
>ref|NP_955013.1| probable palmitoyltransferase ZDHHC19 [Mus musculus].
Length = 347
Score = 101 bits (251), Expect = 1e-21
Identities = 52/145 (35%), Positives = 71/145 (48%)
Frame = +1
Query: 505 FYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRA 684
F +TL L L LFF F CR+L A P LF+ + +L+ +FSDPG++ R
Sbjct: 33 FNVTLLLFLSG--LFFGFPCRWLVQNGEWAFPAITGPLFILTFFSLVSLNFSDPGILHRG 90
Query: 685 LPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSI 864
E P + ++N + +L++C C RPPR HC
Sbjct: 91 STKE--------------------DPMTVHVVRVNQRAFRLEWCPKCLFHRPPRTYHCPW 130
Query: 865 CDNCVERFDHHCPWVGNCVGKRNYR 939
C+ CVE FDHHC WV NC+G RN+R
Sbjct: 131 CNICVEDFDHHCKWVNNCIGHRNFR 155
>ref|NP_001032851.1| probable palmitoyltransferase ZDHHC12 isoform b [Mus musculus].
Length = 267
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/114 (35%), Positives = 56/114 (49%)
Frame = +1
Query: 595 IPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIK 774
+P+ +L L S+ L S DPG + T PQG+ P+ +
Sbjct: 46 LPLTFLLLVLSSLLLYLAVSLMDPGYV-----------------TTQPQPQGE---PKEE 85
Query: 775 NFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNY 936
+ Q V L+ C C + +P RA HC C CV R+DHHCPW+ NCVG+RN+
Sbjct: 86 QAAMVPQAVPLRRCRHCLVLQPLRARHCRDCRRCVRRYDHHCPWMENCVGERNH 139
>ref|NP_079704.2| probable palmitoyltransferase ZDHHC12 isoform a [Mus musculus].
Length = 281
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/114 (35%), Positives = 56/114 (49%)
Frame = +1
Query: 595 IPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIK 774
+P+ +L L S+ L S DPG + T PQG+ P+ +
Sbjct: 60 LPLTFLLLVLSSLLLYLAVSLMDPGYV-----------------TTQPQPQGE---PKEE 99
Query: 775 NFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNY 936
+ Q V L+ C C + +P RA HC C CV R+DHHCPW+ NCVG+RN+
Sbjct: 100 QAAMVPQAVPLRRCRHCLVLQPLRARHCRDCRRCVRRYDHHCPWMENCVGERNH 153
>ref|NP_598728.1| palmitoyltransferase ZDHHC7 [Mus musculus].
Length = 308
Score = 74.7 bits (182), Expect = 1e-13
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1
Query: 733 GAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVG 912
GAVP+G +++ Q+ V K C C +P RA HCSIC C+ + DHHCPWV
Sbjct: 106 GAVPKGNATKEYMESLQLKPGEVIYK-CPKCCCIKPERAHHCSICKRCIRKMDHHCPWVN 164
Query: 913 NCVGKRNYR 939
NCVG++N R
Sbjct: 165 NCVGEKNQR 173
>ref|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musculus].
Length = 368
Score = 74.3 bits (181), Expect = 2e-13
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 805 LKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYR 939
++YC C++ +P RA HCS CD CV + DHHCPWV NCVG NY+
Sbjct: 125 IRYCEKCQLIKPDRAHHCSACDRCVLKMDHHCPWVNNCVGFTNYK 169
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,095,827
Number of extensions: 1099101
Number of successful extensions: 4914
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4885
Number of HSP's successfully gapped: 28
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isofo... 388 e-129
Alignment gi|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus ... 388 e-129
Alignment gi|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus... 239 5e-75
Alignment gi|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDH... 136 1e-45
Alignment gi|XP_003122761.1| PREDICTED: probable palmitoyltransferase ZDH... 146 2e-35
Alignment gi|XP_001929688.1| PREDICTED: probable palmitoyltransferase ZDH... 145 3e-35
Alignment gi|XP_003353898.1| PREDICTED: probable palmitoyltransferase ZDH... 107 1e-23
Alignment gi|XP_003132663.1| PREDICTED: probable palmitoyltransferase ZDH... 102 4e-22
Alignment gi|XP_003126871.1| PREDICTED: palmitoyltransferase ZDHHC7-like ... 74 1e-13
Alignment gi|XP_003358449.1| PREDICTED: palmitoyltransferase ZDHHC3-like ... 74 2e-13
>ref|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isoform 2 [Sus scrofa].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus scrofa].
Length = 364
Score = 388 bits (996), Expect(2) = e-129
Identities = 186/200 (93%), Positives = 186/200 (93%)
Frame = +1
Query: 394 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 573
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL
Sbjct: 1 MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYL 60
Query: 574 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 753
AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ
Sbjct: 61 AVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQ 120
Query: 754 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 933
RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN
Sbjct: 121 RPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRN 180
Query: 934 YRXXXXXXXXXXXXXXYVFA 993
YR YVFA
Sbjct: 181 YRYFYLFILSLSLLTIYVFA 200
Score = 94.4 bits (233), Expect(2) = e-129
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWS+ GLTGF FLVALN
Sbjct: 203 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALN 253
>ref|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus scrofa].
Length = 345
Score = 239 bits (610), Expect(2) = 5e-75
Identities = 110/195 (56%), Positives = 138/195 (70%)
Frame = +1
Query: 409 VRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLS 588
+ ++ RKWE PGRN F C GR+M+A G+F LTL LIL T LFF F+C +LA QL+
Sbjct: 19 IGRRPRRKWEVFPGRNRFYCGGRLMLAGHGGVFALTLLLILTTTVLFFVFDCPFLARQLT 78
Query: 589 PAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPR 768
AIP+ AA+LF F M+ LL+TSF+DPG++PRA EAA +E +I+ T + RPPPR
Sbjct: 79 LAIPIIAAILFFFVMSCLLQTSFTDPGILPRATVCEAAALEKQIDNTGSST---YRPPPR 135
Query: 769 IKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRXXX 948
+ IN Q+VKLKYC+TCK+FRPPR SHCS+CDNCVERFDHHCPWVGNCVG+RNYR
Sbjct: 136 TREVMINGQVVKLKYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGRRNYRFFY 195
Query: 949 XXXXXXXXXXXYVFA 993
++FA
Sbjct: 196 AFILSLSFLTAFIFA 210
Score = 60.8 bits (146), Expect(2) = 5e-75
Identities = 26/51 (50%), Positives = 38/51 (74%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
+ ++ L+S FL TLKETP +VLE++ICFF++WS+ GL+GF +LV N
Sbjct: 213 VTHLTLRSQGSNFLSTLKETPASVLELVICFFSIWSILGLSGFHTYLVTSN 263
>ref|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDHHC14-like [Sus scrofa].
Length = 410
Score = 136 bits (343), Expect(2) = 1e-45
Identities = 59/91 (64%), Positives = 64/91 (70%)
Frame = +1
Query: 721 EATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHC 900
+ NG G RPPPR K IN Q VKLKYC+TCKIFRPPRASHCS+CDNCVERFDHHC
Sbjct: 58 DIANGTSSGGYRPPPRTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHC 117
Query: 901 PWVGNCVGKRNYRXXXXXXXXXXXXXXYVFA 993
PWVGNCVGKRNYR ++FA
Sbjct: 118 PWVGNCVGKRNYRFFYMFILSLSFLTVFIFA 148
Score = 65.5 bits (158), Expect(2) = 1e-45
Identities = 27/51 (52%), Positives = 40/51 (78%)
Frame = +3
Query: 999 IVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSLRGLTGFKLFLVALN 1151
I +V L+S + GFL LK+TPGTVLE ++CFF++WS+ GL+GF +L++ N
Sbjct: 151 ITHVTLRSQQAGFLNALKDTPGTVLEAVVCFFSVWSIVGLSGFHTYLISSN 201
>ref|XP_003122761.1| PREDICTED: probable palmitoyltransferase ZDHHC5 isoform 1 [Sus
scrofa].
Length = 715
Score = 146 bits (369), Expect = 2e-35
Identities = 66/138 (47%), Positives = 89/138 (64%)
Frame = +1
Query: 526 ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAF 705
++G TLFFAF C L++ +SPA+P++ A++FLF +A +F DPG+ PRA DE
Sbjct: 24 LVGATTLFFAFTCPGLSLSVSPAVPIYNAIVFLFVLANFSMATFMDPGIFPRAEEDEDK- 82
Query: 706 IEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVER 885
E + A P K +I V++K+C TC+ +RPPR SHCS+CDNCVE
Sbjct: 83 -EDDFRA------------PLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEE 129
Query: 886 FDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 130 FDHHCPWVNNCIGRRNYR 147
>ref|XP_001929688.1| PREDICTED: probable palmitoyltransferase ZDHHC8 [Sus scrofa].
Length = 764
Score = 145 bits (367), Expect = 3e-35
Identities = 68/139 (48%), Positives = 87/139 (62%)
Frame = +1
Query: 523 LILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAA 702
L++G+ TLFF F C +L +SPA+PV+ +LFLF +A +F DPGV PRA DE
Sbjct: 23 LLVGSSTLFFVFTCPWLTRAVSPAVPVYNGILFLFVLANFSMATFMDPGVFPRADEDEDK 82
Query: 703 FIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
E + A P KN + V++K+C TC +RPPR SHCS+CDNCVE
Sbjct: 83 --EDDFRA------------PLYKNVDVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVE 128
Query: 883 RFDHHCPWVGNCVGKRNYR 939
FDHHCPWV NC+G+RNYR
Sbjct: 129 DFDHHCPWVNNCIGRRNYR 147
>ref|XP_003353898.1| PREDICTED: probable palmitoyltransferase ZDHHC5 isoform 2 [Sus
scrofa].
Length = 652
Score = 107 bits (268), Expect = 1e-23
Identities = 48/96 (50%), Positives = 60/96 (62%)
Frame = +1
Query: 652 SFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKI 831
+F DPG+ PRA DE E + A P K +I V++K+C TC+
Sbjct: 3 TFMDPGIFPRAEEDEDK--EDDFRA------------PLYKTVEIKGIQVRMKWCATCRF 48
Query: 832 FRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYR 939
+RPPR SHCS+CDNCVE FDHHCPWV NC+G+RNYR
Sbjct: 49 YRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYR 84
>ref|XP_003132663.1| PREDICTED: probable palmitoyltransferase ZDHHC19-like [Sus scrofa].
Length = 392
Score = 102 bits (254), Expect = 4e-22
Identities = 51/139 (36%), Positives = 75/139 (53%)
Frame = +1
Query: 523 LILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAA 702
L++ LFFAF CR+LA + A P+ +LF+ + +L+ +FSDPG++ R
Sbjct: 37 LLITFSGLFFAFPCRWLAQKGEWAFPIVTGLLFVLTFFSLISLNFSDPGILHR------- 89
Query: 703 FIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVE 882
G+ QG P + +N++ +L++C C PPR HC C+ CVE
Sbjct: 90 ----------GSNEQG---PMVVHVVWVNHRAFRLQWCQKCCFHCPPRTHHCPSCNICVE 136
Query: 883 RFDHHCPWVGNCVGKRNYR 939
FDHHC WV NC+G RN+R
Sbjct: 137 DFDHHCKWVNNCIGHRNFR 155
>ref|XP_003126871.1| PREDICTED: palmitoyltransferase ZDHHC7-like [Sus scrofa].
Length = 308
Score = 74.3 bits (181), Expect = 1e-13
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1
Query: 733 GAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVG 912
GAVP+G +++ Q+ V K C C +P RA HCSIC C+ + DHHCPWV
Sbjct: 106 GAVPKGNATKEFMESLQLKPGEVIYK-CPKCCCIKPERAHHCSICKRCIRKMDHHCPWVN 164
Query: 913 NCVGKRNYR 939
NCVG++N R
Sbjct: 165 NCVGEKNQR 173
>ref|XP_003358449.1| PREDICTED: palmitoyltransferase ZDHHC3-like [Sus scrofa].
Length = 247
Score = 73.9 bits (180), Expect = 2e-13
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +1
Query: 724 ATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCP 903
A+ GAVP+G I++ Q+ V K C C +P RA HCS+C C+ + DHHCP
Sbjct: 16 ASVGAVPKGNATKEFIESLQLKPGQVVYK-CPKCCSIKPDRAHHCSVCKRCIRKMDHHCP 74
Query: 904 WVGNCVGKRNYR 939
WV NCVG+ N +
Sbjct: 75 WVNNCVGENNQK 86
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,524,913
Number of extensions: 863827
Number of successful extensions: 4049
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4015
Number of HSP's successfully gapped: 25
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007535
(1152 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 609 e-171
Sscrofa_Chr06 68 1e-08
Sscrofa_Chr01 60 3e-06
>Sscrofa_ChrX
|| Length = 144288218
Score = 609 bits (307), Expect = e-171
Identities = 307/307 (100%)
Strand = Plus / Minus
Query: 257 agggctggaaattggacttttgatgatgtttgacccggcggcaacaatagcaggcaacgt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122203244 agggctggaaattggacttttgatgatgtttgacccggcggcaacaatagcaggcaacgt 122203185
Query: 317 gatttcaaagctgggctcaacttctgtttcttcccgcttgtaatcataaagcccattttg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122203184 gatttcaaagctgggctcaacttctgtttcttcccgcttgtaatcataaagcccattttg 122203125
Query: 377 gaccaggaattccaatcatgtctgtgatggtggtgagaaagaaggtgacacggaaatggg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122203124 gaccaggaattccaatcatgtctgtgatggtggtgagaaagaaggtgacacggaaatggg 122203065
Query: 437 agaaactcccaggcaggaacaccttctgctgtgatggccgagtcatgatggcccggcaaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122203064 agaaactcccaggcaggaacaccttctgctgtgatggccgagtcatgatggcccggcaaa 122203005
Query: 497 agggcatcttctacttgaccctcttcctcatcctggggacgtgtacgctcttcttcgctt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122203004 agggcatcttctacttgaccctcttcctcatcctggggacgtgtacgctcttcttcgctt 122202945
Query: 557 tcgagtg 563
|||||||
Sbjct: 122202944 tcgagtg 122202938
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 1 ccattcggccagcggtgggcggttgccacagctggtttagggcccggaccattggggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205025 ccattcggccagcggtgggcggttgccacagctggtttagggcccggaccattggggccc 122204966
Query: 61 cttgtcaggaggaggcagccttcgggctggggagtagtcgctgccacctcgggcggccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122204965 cttgtcaggaggaggcagccttcgggctggggagtagtcgctgccacctcgggcggccga 122204906
Query: 121 cgcggtcccctgggatagtgcacttcctggcctcgtttccccgctgagttcgctctccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122204905 cgcggtcccctgggatagtgcacttcctggcctcgtttccccgctgagttcgctctccgg 122204846
Query: 181 ggttcagg 188
||||||||
Sbjct: 122204845 ggttcagg 122204838
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 720 agaagctaccaatggtgcggtcccccaaggccagcgaccaccccctcgcatcaagaattt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122185208 agaagctaccaatggtgcggtcccccaaggccagcgaccaccccctcgcatcaagaattt 122185149
Query: 780 ccagataaacaaccagatcgtgaagctgaagtactgttacacatgcaagatcttccggcc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122185148 ccagataaacaaccagatcgtgaagctgaagtactgttacacatgcaagatcttccggcc 122185089
Query: 840 tccccgggcctctcactgcagcatctgtgacaactgcgtgg 880
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 122185088 tccccgggcctctcactgcagcatctgtgacaactgcgtgg 122185048
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 561 gtgccgctacctggctgtccagctgtctcctgccatccctgtgtttgctgccatgctctt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122192003 gtgccgctacctggctgtccagctgtctcctgccatccctgtgtttgctgccatgctctt 122191944
Query: 621 ccttttctccatggctacactgttgaggaccagcttcagtgaccctggagtgatccctcg 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122191943 ccttttctccatggctacactgttgaggaccagcttcagtgaccctggagtgatccctcg 122191884
Query: 681 ggccctaccagatgaagcagctttcatagaaatggagatag 721
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 122191883 ggccctaccagatgaagcagctttcatagaaatggagatag 122191843
Score = 252 bits (127), Expect = 4e-64
Identities = 137/139 (98%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 880 gagcgcttcgaccatcactgcccctgggtgggtaattgtgttggaaagaggaactaccgc 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122177931 gagcgcttcgaccatcactgcccctgggtgggtaattgtgttggaaagaggaactaccgc 122177872
Query: 940 tacttctacctcttcatcctttctctctccctcctcaccatctacgtcttcgcc-tccac 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 122177871 tacttctacctcttcatcctttctctctccctcctcaccatctacgtcttcgccttcaac 122177812
Query: 999 atcgtctatgtggccctca 1017
|||||||||||||||||||
Sbjct: 122177811 atcgtctatgtggccctca 122177793
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 185 caggcccagctctcctccttcctggtctctctgctcccgctgggctggtttatcaggagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122204492 caggcccagctctcctccttcctggtctctctgctcccgctgggctggtttatcaggagg 122204433
Query: 245 agattgttttccagg 259
|||||||||||||||
Sbjct: 122204432 agattgttttccagg 122204418
Score = 119 bits (60), Expect = 4e-24
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 1065 actgttctagaagtactcatttgcttcttcacactctggtccctccggggactgactgga 1124
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 122175621 actgttctagaagtactcatttgcttcttcacactctggtccgtcgtgggactgactgga 122175562
Query: 1125 ttcaaacttttccttgtggctctcaacc 1152
||| | ||||||||||||||||||||
Sbjct: 122175561 ttccacactttccttgtggctctcaacc 122175534
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 1018 aatccttgaaaattggcttcctggaaacattgaaagaaactcctggaac 1066
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 122176861 aatccttgaaaattggcttcctggagacattgaaagaaactcctggaac 122176813
>Sscrofa_Chr06
|| Length = 157765593
Score = 67.9 bits (34), Expect = 1e-08
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 799 gtgaagctgaagtactgttacacatgcaagatcttccggcctccccgggcctctcactgc 858
||||||||||||||||| | ||| |||||||| || ||||| || ||| |||| ||||||
Sbjct: 77745566 gtgaagctgaagtactgcttcacctgcaagatgtttcggccaccgcggacctcacactgc 77745625
Query: 859 agcatctgtgacaactgcgtgg 880
|| ||||||||||||| ||||
Sbjct: 77745626 agtgtctgtgacaactgtgtgg 77745647
>Sscrofa_Chr01
|| Length = 315321322
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 479 tcatgatggcccggcaaaagggcatcttctacttgaccctcttcctcatcctgg 532
|||||||||||||||| | |||| |||||||| |||| ||| ||||||||||||
Sbjct: 11655150 tcatgatggcccggcagacgggcgtcttctacctgactctcatcctcatcctgg 11655097
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,425,336
Number of extensions: 332
Number of successful extensions: 332
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 10
Length of query: 1152
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1131
Effective length of database: 2,808,413,156
Effective search space: 3176315279436
Effective search space used: 3176315279436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)