Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014895.1| delta-aminolevulinic acid dehydratase [Bos t... 544 e-155
>ref|NP_001014895.1| delta-aminolevulinic acid dehydratase [Bos taurus].
Length = 329
Score = 544 bits (1402), Expect = e-155
Identities = 267/276 (96%), Positives = 271/276 (98%)
Frame = +2
Query: 125 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 304
M PQSVLHSGYFHPLLR WQTAATSLSASNLIYPIFVTD PDDKQP+ASLPGVARYGVNR
Sbjct: 1 MHPQSVLHSGYFHPLLRNWQTAATSLSASNLIYPIFVTDVPDDKQPIASLPGVARYGVNR 60
Query: 305 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 484
LEEMLKPLVEEGLRCVLIFGVPSR+PKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD
Sbjct: 61 LEEMLKPLVEEGLRCVLIFGVPSRVPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 120
Query: 485 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 664
VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 665 ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR 844
ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR
Sbjct: 181 ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR 240
Query: 845 DVREGADMLMVKPGMPYLDIVREVKTKHPELPLAVY 952
DVREGAD+LMVKPG PYLDIVREVK KHPELPLAVY
Sbjct: 241 DVREGADLLMVKPGTPYLDIVREVKNKHPELPLAVY 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,228,445
Number of extensions: 1263268
Number of successful extensions: 5307
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5304
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855370.1| PREDICTED: similar to Delta-aminolevulinic acid... 532 e-151
>ref|XP_855370.1| PREDICTED: similar to Delta-aminolevulinic acid dehydratase
(Porphobilinogen synthase) (ALADH) [Canis familiaris].
Length = 330
Score = 532 bits (1371), Expect = e-151
Identities = 260/276 (94%), Positives = 269/276 (97%)
Frame = +2
Query: 125 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 304
MQPQSVLHSGYFHPLLRTWQTAAT+LSASNLIYPIFVTD PDD QP++SLPGVARYGVNR
Sbjct: 1 MQPQSVLHSGYFHPLLRTWQTAATTLSASNLIYPIFVTDVPDDVQPISSLPGVARYGVNR 60
Query: 305 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 484
LEEMLKPLVEEGLRCVL+FGVPSR+PKDERGSAADSEDSPAIEAIRLLRK FPSLLVACD
Sbjct: 61 LEEMLKPLVEEGLRCVLVFGVPSRVPKDERGSAADSEDSPAIEAIRLLRKTFPSLLVACD 120
Query: 485 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 664
VCLCPYTSHGHCGLLS+NG+F AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSKNGAFLAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 665 ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR 844
ALMAHG GNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAV R
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVAR 240
Query: 845 DVREGADMLMVKPGMPYLDIVREVKTKHPELPLAVY 952
DVREGADMLMVKPGMPYLD+VREVK KHPELPLAVY
Sbjct: 241 DVREGADMLMVKPGMPYLDVVREVKDKHPELPLAVY 276
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,864,324
Number of extensions: 1294975
Number of successful extensions: 5447
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5438
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000022.3| delta-aminolevulinic acid dehydratase [Homo sap... 523 e-148
>ref|NP_000022.3| delta-aminolevulinic acid dehydratase [Homo sapiens].
Length = 330
Score = 523 bits (1346), Expect = e-148
Identities = 254/276 (92%), Positives = 266/276 (96%)
Frame = +2
Query: 125 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 304
MQPQSVLHSGYFHPLLR WQTA T+L+ASNLIYPIFVTD PDD QP+ SLPGVARYGV R
Sbjct: 1 MQPQSVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR 60
Query: 305 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 484
LEEML+PLVEEGLRCVLIFGVPSR+PKDERGSAADSE+SPAIEAI LLRK FP+LLVACD
Sbjct: 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120
Query: 485 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 664
VCLCPYTSHGHCGLLSENG+F+AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 665 ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR 844
ALMAHG GNRVSVMSYSAKFASCFYGPFRDAA+SSPAFGDRRCYQLPPGARGLALRAVDR
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR 240
Query: 845 DVREGADMLMVKPGMPYLDIVREVKTKHPELPLAVY 952
DVREGADMLMVKPGMPYLDIVREVK KHP+LPLAVY
Sbjct: 241 DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVY 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,986,033
Number of extensions: 1266065
Number of successful extensions: 5032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5021
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032551.3| delta-aminolevulinic acid dehydratase [Mus musc... 508 e-144
>ref|NP_032551.3| delta-aminolevulinic acid dehydratase [Mus musculus].
Length = 330
Score = 508 bits (1308), Expect = e-144
Identities = 246/276 (89%), Positives = 263/276 (95%)
Frame = +2
Query: 125 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 304
M QSVLHSGYFHPLLR+WQTAA+++SASNLIYPIFVTD PDD QP+ASLPGVARYGVN+
Sbjct: 1 MHHQSVLHSGYFHPLLRSWQTAASTVSASNLIYPIFVTDVPDDVQPIASLPGVARYGVNQ 60
Query: 305 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 484
LEEML+PLVE GLRCVLIFGVPSR+PKDE+GSAADSEDSP IEA+RLLRK FPSLLVACD
Sbjct: 61 LEEMLRPLVEAGLRCVLIFGVPSRVPKDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACD 120
Query: 485 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 664
VCLCPYTSHGHCGLLSENG+F AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIK
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFLAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKA 180
Query: 665 ALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVDR 844
AL+ HG GNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAV R
Sbjct: 181 ALLKHGLGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVAR 240
Query: 845 DVREGADMLMVKPGMPYLDIVREVKTKHPELPLAVY 952
D++EGADMLMVKPG+PYLD+VREVK KHPELPLAVY
Sbjct: 241 DIQEGADMLMVKPGLPYLDMVREVKDKHPELPLAVY 276
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,410,221
Number of extensions: 1049081
Number of successful extensions: 4096
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4086
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361778.1| PREDICTED: delta-aminolevulinic acid dehydra... 248 3e-66
>ref|XP_003361778.1| PREDICTED: delta-aminolevulinic acid dehydratase-like, partial [Sus
scrofa].
Length = 122
Score = 248 bits (634), Expect = 3e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = +2
Query: 386 DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR 565
DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR
Sbjct: 1 DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR 60
Query: 566 QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAKFASCFYGP 745
QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAKFASCFYGP
Sbjct: 61 QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAKFASCFYGP 120
Query: 746 FR 751
FR
Sbjct: 121 FR 122
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,644,138
Number of extensions: 816700
Number of successful extensions: 3430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3424
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007538
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895334.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 276 2e-71
gb|GL896495.1| Sus scrofa unplaced genomic scaffold chrU_scaffold83 230 1e-57
gb|GL893401.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 196 2e-47
gb|GL893668.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 190 1e-45
gb|GL893446.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 174 6e-41
>gb|GL895334.1| Sus scrofa unplaced genomic scaffold chrU_scaffold391
Length = 971
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 384 aggatgagcggggctctgcagccgactctgaggactccccagctatcgaggcgatccgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aggatgagcggggctctgcagccgactctgaggactccccagctatcgaggcgatccgtc 176
Query: 444 tgctgcgcaagaacttcccgagcctcctggtggcctgcgatgtctgcctgtgcccctaca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgctgcgcaagaacttcccgagcctcctggtggcctgcgatgtctgcctgtgcccctaca 236
Query: 504 cctcccacggtcactgcgg 522
|||||||||||||||||||
Sbjct: 237 cctcccacggtcactgcgg 255
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 603 caggatgtcaggtgatagccccgtcggacatgatggatggacgcgtggaagccattaagg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caggatgtcaggtgatagccccgtcggacatgatggatggacgcgtggaagccattaagg 587
Query: 663 aggctctgatggcacatggattcggcaaccgggta 697
|||||||||||||||||||||||||||||||||||
Sbjct: 588 aggctctgatggcacatggattcggcaaccgggta 622
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 521 gggcttctgagtgagaatgggtccttccaagctgaggagagccgccagcggctggcggag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gggcttctgagtgagaatgggtccttccaagctgaggagagccgccagcggctggcggag 405
Query: 581 gtggcactggcctatgccaaggcagg 606
||||||||||||||||||||||||||
Sbjct: 406 gtggcactggcctatgccaaggcagg 431
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 694 ggtatcagtgatgagctatagcgccaaattcgcttcctgtttctacggacctttccgg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggtatcagtgatgagctatagcgccaaattcgcttcctgtttctacggacctttccgg 898
>gb|GL896495.1| Sus scrofa unplaced genomic scaffold chrU_scaffold83
Length = 135
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 49 gagctgagcacgaagcagaacccccaggagccctccattccaaccagctggctgctctct 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gagctgagcacgaagcagaacccccaggagccctccattccaaccagctggctgctctct 79
Query: 109 gtgccccctgcccaccatgcagccacagtcagtcctgcacagcggctacttccacc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gtgccccctgcccaccatgcagccacagtcagtcctgcacagcggctacttccacc 135
>gb|GL893401.1| Sus scrofa unplaced genomic scaffold chrU_scaffold217
Length = 273
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 140 gtcctgcacagcggctacttccacccactgcttcggacctggcagacagccgccaccagc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtcctgcacagcggctacttccacccactgcttcggacctggcagacagccgccaccagc 214
Query: 200 cttagtgcctccaacctcatctaccccatctttgtcacg 238
|||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cttagtgcctccaacctcatctaccccatctttgtcacg 175
>gb|GL893668.1| Sus scrofa unplaced genomic scaffold chrU_scaffold241
Length = 309
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 287 agatatggcgtgaaccgtctggaagagatgctgaagcccctggtggaagagggcctgcgc 346
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 100 agatatggcgtgaaccgtctggaagagatgctgaagccgctggtggaagagggcctgcgc 41
Query: 347 tgcgtcctgatcttcggtgtccccagcagaattcccaagg 386
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tgcgtcctgatcttcggtgtccccagcagaattcccaagg 1
>gb|GL893446.1| Sus scrofa unplaced genomic scaffold chrU_scaffold221
Length = 282
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 838 ggaccgggatgtacgggaaggagccgacatgctcatggtgaagccaggaatgccctacct 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ggaccgggatgtacgggaaggagccgacatgctcatggtgaagccaggaatgccctacct 226
Query: 898 ggacatcgtgcgggaggtaaagaccaag 925
||||||||||||||||||||||||||||
Sbjct: 227 ggacatcgtgcgggaggtaaagaccaag 254
Score = 155 bits (78), Expect = 5e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 762 aatcaagcccagcttttggagatcgccgctgctaccagctgccgcctggagcacgaggcc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatcaagcccagcttttggagatcgccgctgctaccagctgccgcctggagcacgaggcc 60
Query: 822 tggccctccgagcagtgg 839
||||||||||||||||||
Sbjct: 61 tggccctccgagcagtgg 78
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,375,102
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 9
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)