Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014895.1| delta-aminolevulinic acid dehydratase [Bos t... 393 e-121
>ref|NP_001014895.1| delta-aminolevulinic acid dehydratase [Bos taurus].
Length = 329
Score = 393 bits (1010), Expect(2) = e-121
Identities = 194/204 (95%), Positives = 198/204 (97%)
Frame = +2
Query: 293 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 472
M PQSVLHSGYFHPLLR WQTAATSLSASNLIYPIFVTD PDDKQP+ASLPGVARYGVNR
Sbjct: 1 MHPQSVLHSGYFHPLLRNWQTAATSLSASNLIYPIFVTDVPDDKQPIASLPGVARYGVNR 60
Query: 473 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 652
LEEMLKPLVEEGLRCVLIFGVPSR+PKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD
Sbjct: 61 LEEMLKPLVEEGLRCVLIFGVPSRVPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 120
Query: 653 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 832
VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 833 ALMAHGFGNRVSVMSYSAQFRFLF 904
ALMAHGFGNRVSVMSYSA+F F
Sbjct: 181 ALMAHGFGNRVSVMSYSAKFASCF 204
Score = 59.7 bits (143), Expect(2) = e-121
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 913 PFRDAAQSSPAFGDRRCYQLPPGPRGL 993
PFRDAAQSSPAFGDRRCYQLPPG RGL
Sbjct: 207 PFRDAAQSSPAFGDRRCYQLPPGARGL 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,119,441
Number of extensions: 1420518
Number of successful extensions: 6165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6161
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855370.1| PREDICTED: similar to Delta-aminolevulinic acid... 382 e-117
>ref|XP_855370.1| PREDICTED: similar to Delta-aminolevulinic acid dehydratase
(Porphobilinogen synthase) (ALADH) [Canis familiaris].
Length = 330
Score = 382 bits (980), Expect(2) = e-117
Identities = 187/204 (91%), Positives = 196/204 (96%)
Frame = +2
Query: 293 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 472
MQPQSVLHSGYFHPLLRTWQTAAT+LSASNLIYPIFVTD PDD QP++SLPGVARYGVNR
Sbjct: 1 MQPQSVLHSGYFHPLLRTWQTAATTLSASNLIYPIFVTDVPDDVQPISSLPGVARYGVNR 60
Query: 473 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 652
LEEMLKPLVEEGLRCVL+FGVPSR+PKDERGSAADSEDSPAIEAIRLLRK FPSLLVACD
Sbjct: 61 LEEMLKPLVEEGLRCVLVFGVPSRVPKDERGSAADSEDSPAIEAIRLLRKTFPSLLVACD 120
Query: 653 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 832
VCLCPYTSHGHCGLLS+NG+F AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSKNGAFLAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 833 ALMAHGFGNRVSVMSYSAQFRFLF 904
ALMAHG GNRVSVMSYSA+F F
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCF 204
Score = 59.7 bits (143), Expect(2) = e-117
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 913 PFRDAAQSSPAFGDRRCYQLPPGPRGL 993
PFRDAAQSSPAFGDRRCYQLPPG RGL
Sbjct: 207 PFRDAAQSSPAFGDRRCYQLPPGARGL 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,039,275
Number of extensions: 1466876
Number of successful extensions: 6212
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6205
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000022.3| delta-aminolevulinic acid dehydratase [Homo sap... 371 e-113
>ref|NP_000022.3| delta-aminolevulinic acid dehydratase [Homo sapiens].
Length = 330
Score = 371 bits (953), Expect(2) = e-113
Identities = 181/204 (88%), Positives = 192/204 (94%)
Frame = +2
Query: 293 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 472
MQPQSVLHSGYFHPLLR WQTA T+L+ASNLIYPIFVTD PDD QP+ SLPGVARYGV R
Sbjct: 1 MQPQSVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR 60
Query: 473 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 652
LEEML+PLVEEGLRCVLIFGVPSR+PKDERGSAADSE+SPAIEAI LLRK FP+LLVACD
Sbjct: 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120
Query: 653 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 832
VCLCPYTSHGHCGLLSENG+F+AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 833 ALMAHGFGNRVSVMSYSAQFRFLF 904
ALMAHG GNRVSVMSYSA+F F
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCF 204
Score = 58.2 bits (139), Expect(2) = e-113
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 913 PFRDAAQSSPAFGDRRCYQLPPGPRGL 993
PFRDAA+SSPAFGDRRCYQLPPG RGL
Sbjct: 207 PFRDAAKSSPAFGDRRCYQLPPGARGL 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,977,888
Number of extensions: 1424364
Number of successful extensions: 5690
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5681
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032551.3| delta-aminolevulinic acid dehydratase [Mus musc... 361 e-111
>ref|NP_032551.3| delta-aminolevulinic acid dehydratase [Mus musculus].
Length = 330
Score = 361 bits (927), Expect(2) = e-111
Identities = 176/204 (86%), Positives = 190/204 (93%)
Frame = +2
Query: 293 MQPQSVLHSGYFHPLLRTWQTAATSLSASNLIYPIFVTDGPDDKQPVASLPGVARYGVNR 472
M QSVLHSGYFHPLLR+WQTAA+++SASNLIYPIFVTD PDD QP+ASLPGVARYGVN+
Sbjct: 1 MHHQSVLHSGYFHPLLRSWQTAASTVSASNLIYPIFVTDVPDDVQPIASLPGVARYGVNQ 60
Query: 473 LEEMLKPLVEEGLRCVLIFGVPSRIPKDERGSAADSEDSPAIEAIRLLRKNFPSLLVACD 652
LEEML+PLVE GLRCVLIFGVPSR+PKDE+GSAADSEDSP IEA+RLLRK FPSLLVACD
Sbjct: 61 LEEMLRPLVEAGLRCVLIFGVPSRVPKDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACD 120
Query: 653 VCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKE 832
VCLCPYTSHGHCGLLSENG+F AEESRQRLAEVALAYAKAGCQV+APSDMMDGRVEAIK
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFLAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKA 180
Query: 833 ALMAHGFGNRVSVMSYSAQFRFLF 904
AL+ HG GNRVSVMSYSA+F F
Sbjct: 181 ALLKHGLGNRVSVMSYSAKFASCF 204
Score = 59.7 bits (143), Expect(2) = e-111
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 913 PFRDAAQSSPAFGDRRCYQLPPGPRGL 993
PFRDAAQSSPAFGDRRCYQLPPG RGL
Sbjct: 207 PFRDAAQSSPAFGDRRCYQLPPGARGL 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,712,457
Number of extensions: 1175875
Number of successful extensions: 4543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4534
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361778.1| PREDICTED: delta-aminolevulinic acid dehydra... 227 6e-61
>ref|XP_003361778.1| PREDICTED: delta-aminolevulinic acid dehydratase-like, partial [Sus
scrofa].
Length = 122
Score = 227 bits (578), Expect(2) = 6e-61
Identities = 113/117 (96%), Positives = 114/117 (97%)
Frame = +2
Query: 554 DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR 733
DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR
Sbjct: 1 DERGSAADSEDSPAIEAIRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESR 60
Query: 734 QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAQFRFLF 904
QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSA+F F
Sbjct: 61 QRLAEVALAYAKAGCQVIAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAKFASCF 117
Score = 25.8 bits (55), Expect(2) = 6e-61
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 891 FASCFYGPF 917
FASCFYGPF
Sbjct: 113 FASCFYGPF 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,207,933
Number of extensions: 922863
Number of successful extensions: 3837
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3833
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007539
(1028 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895334.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 276 2e-71
gb|GL896495.1| Sus scrofa unplaced genomic scaffold chrU_scaffold83 228 5e-57
gb|GL894346.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 198 4e-48
gb|GL893401.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 196 2e-47
gb|GL893668.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 190 1e-45
gb|GL893446.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 2e-25
>gb|GL895334.1| Sus scrofa unplaced genomic scaffold chrU_scaffold391
Length = 971
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 552 aggatgagcggggctctgcagccgactctgaggactccccagctatcgaggcgatccgtc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aggatgagcggggctctgcagccgactctgaggactccccagctatcgaggcgatccgtc 176
Query: 612 tgctgcgcaagaacttcccgagcctcctggtggcctgcgatgtctgcctgtgcccctaca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgctgcgcaagaacttcccgagcctcctggtggcctgcgatgtctgcctgtgcccctaca 236
Query: 672 cctcccacggtcactgcgg 690
|||||||||||||||||||
Sbjct: 237 cctcccacggtcactgcgg 255
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 771 caggatgtcaggtgatagccccgtcggacatgatggatggacgcgtggaagccattaagg 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caggatgtcaggtgatagccccgtcggacatgatggatggacgcgtggaagccattaagg 587
Query: 831 aggctctgatggcacatggattcggcaaccgggta 865
|||||||||||||||||||||||||||||||||||
Sbjct: 588 aggctctgatggcacatggattcggcaaccgggta 622
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 689 gggcttctgagtgagaatgggtccttccaagctgaggagagccgccagcggctggcggag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gggcttctgagtgagaatgggtccttccaagctgaggagagccgccagcggctggcggag 405
Query: 749 gtggcactggcctatgccaaggcagg 774
||||||||||||||||||||||||||
Sbjct: 406 gtggcactggcctatgccaaggcagg 431
Score = 79.8 bits (40), Expect = 3e-12
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 862 ggtatcagtgatgagctatagcgcccaatttcgcttcctgtttctacggacc 913
||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 841 ggtatcagtgatgagctatagcg-ccaaattcgcttcctgtttctacggacc 891
>gb|GL896495.1| Sus scrofa unplaced genomic scaffold chrU_scaffold83
Length = 135
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 218 agctgagcacgaagcagaacccccaggagccctccattccaaccagctggctgctctctg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 agctgagcacgaagcagaacccccaggagccctccattccaaccagctggctgctctctg 80
Query: 278 tgccccctgcccaccatgcagccacagtcagtcctgcacagcggctacttccacc 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgccccctgcccaccatgcagccacagtcagtcctgcacagcggctacttccacc 135
>gb|GL894346.1| Sus scrofa unplaced genomic scaffold chrU_scaffold302
Length = 444
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1 gcttccgggtgagctgccccgcccccgcgtgggcccaagagaccagagctcgcgactgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gcttccgggtgagctgccccgcccccgcgtgggcccaagagaccagagctcgcgactgtg 105
Query: 61 gtggcgggagtagcggcgtggattccttacgaaagccggt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gtggcgggagtagcggcgtggattccttacgaaagccggt 65
>gb|GL893401.1| Sus scrofa unplaced genomic scaffold chrU_scaffold217
Length = 273
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 308 gtcctgcacagcggctacttccacccactgcttcggacctggcagacagccgccaccagc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtcctgcacagcggctacttccacccactgcttcggacctggcagacagccgccaccagc 214
Query: 368 cttagtgcctccaacctcatctaccccatctttgtcacg 406
|||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cttagtgcctccaacctcatctaccccatctttgtcacg 175
>gb|GL893668.1| Sus scrofa unplaced genomic scaffold chrU_scaffold241
Length = 309
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 455 agatatggcgtgaaccgtctggaagagatgctgaagcccctggtggaagagggcctgcgc 514
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 100 agatatggcgtgaaccgtctggaagagatgctgaagccgctggtggaagagggcctgcgc 41
Query: 515 tgcgtcctgatcttcggtgtccccagcagaattcccaagg 554
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tgcgtcctgatcttcggtgtccccagcagaattcccaagg 1
>gb|GL893446.1| Sus scrofa unplaced genomic scaffold chrU_scaffold221
Length = 282
Score = 123 bits (62), Expect = 2e-25
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 932 aatcaagcccagcttttggagatcgccgctgctaccagctgccgcctggaccacgaggcc 991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 aatcaagcccagcttttggagatcgccgctgctaccagctgccgcctggagcacgaggcc 60
Query: 992 t-gccctccgagca 1004
| ||||||||||||
Sbjct: 61 tggccctccgagca 74
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,977,601
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 9
Length of query: 1028
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1007
Effective length of database: 2,808,413,156
Effective search space: 2828072048092
Effective search space used: 2828072048092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)