Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094629.1| dTDP-D-glucose 4,6-dehydratase [Bos taurus]. 524 e-149
Alignment gi|NP_001193137.1| UDP-glucose 4-epimerase [Bos taurus]. 87 3e-17
Alignment gi|XP_002685758.1| PREDICTED: UDP-galactose-4-epimerase [Bos ta... 87 3e-17
Alignment gi|NP_001192993.1| UDP-glucuronic acid decarboxylase 1 [Bos tau... 85 1e-16
Alignment gi|XP_002691390.1| PREDICTED: UDP-glucuronate decarboxylase 1-l... 85 1e-16
Alignment gi|NP_776768.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4... 60 2e-09
Alignment gi|NP_001073800.1| GDP-mannose 4,6 dehydratase [Bos taurus]. 59 5e-09
Alignment gi|NP_001029868.1| 3 beta-hydroxysteroid dehydrogenase type 7 [... 50 3e-06
Alignment gi|NP_001030559.1| sterol-4-alpha-carboxylate 3-dehydrogenase, ... 49 9e-06
>ref|NP_001094629.1| dTDP-D-glucose 4,6-dehydratase [Bos taurus].
Length = 355
Score = 524 bits (1349), Expect = e-149
Identities = 256/267 (95%), Positives = 264/267 (98%)
Frame = +2
Query: 47 MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN 226
M+ A RAE LGPP+SFAKRVLVTGGAGFIASH+IVSLVEDYPNYMI+NLDKLDYCASLKN
Sbjct: 1 MSVAGRAESLGPPDSFAKRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKN 60
Query: 227 LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 406
LETIS+KQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY
Sbjct: 61 LETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 120
Query: 407 GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 586
GTHVL+SAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY
Sbjct: 121 GTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 180
Query: 587 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
WE+YKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHG+GLQTRNFLYATDVVE
Sbjct: 181 WEQYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVE 240
Query: 767 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 847
AFLTVLKKGKPGEIYNIGTNFEMSVLQ
Sbjct: 241 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 267
Score = 86.7 bits (213), Expect = 3e-17
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +3
Query: 816 LGPILKCQFSSLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMESEKIH 977
+G + LAKELIQLIKET SESEMENWVDYV+DRPTNDMRYPM+SEKIH
Sbjct: 257 IGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIH 310
>ref|NP_001193137.1| UDP-glucose 4-epimerase [Bos taurus].
Length = 348
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 29/283 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVE-DYPNYMIVNLDKL-----DYCASLKNLETISDKQNY 256
A++VLVTGGAG+I SH ++ L+E Y +I N SL+ ++ ++ + +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYSPMVIDNFHNAIRGGGSMPESLRRVQDLTGR-SV 60
Query: 257 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAH 436
+F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 61 EFEEMDILDQAALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMR 120
Query: 437 EARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-FPV 610
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAWNA 180
Query: 611 VITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQTR 736
V+ R N G H P ++P ++S + R+ ++ G R
Sbjct: 181 VLLRYFNPIGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREVLNVFGNDYDTEDGTGVR 239
Query: 737 NFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
++++ D+ + + L+K K IYN+GT SVLQ Q
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQ 282
>ref|XP_002685758.1| PREDICTED: UDP-galactose-4-epimerase [Bos taurus].
Length = 348
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 29/283 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVE-DYPNYMIVNLDKL-----DYCASLKNLETISDKQNY 256
A++VLVTGGAG+I SH ++ L+E Y +I N SL+ ++ ++ + +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYSPMVIDNFHNAIRGGGSMPESLRRVQDLTGR-SV 60
Query: 257 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAH 436
+F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 61 EFEEMDILDQAALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMR 120
Query: 437 EARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-FPV 610
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAWNA 180
Query: 611 VITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQTR 736
V+ R N G H P ++P ++S + R+ ++ G R
Sbjct: 181 VLLRYFNPIGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREVLNVFGNDYDTEDGTGVR 239
Query: 737 NFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
++++ D+ + + L+K K IYN+GT SVLQ Q
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQ 282
>ref|NP_001192993.1| UDP-glucuronic acid decarboxylase 1 [Bos taurus].
Length = 420
Score = 84.7 bits (208), Expect = 1e-16
Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+LVTGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 89 KRILVTGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 198 LLASTSEVYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 318 SSPV-NLGNPEEHTILEFAQ 336
>ref|XP_002691390.1| PREDICTED: UDP-glucuronate decarboxylase 1-like [Bos taurus].
Length = 420
Score = 84.7 bits (208), Expect = 1e-16
Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+LVTGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 89 KRILVTGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 198 LLASTSEVYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 318 SSPV-NLGNPEEHTILEFAQ 336
>ref|NP_776768.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase [Bos
taurus].
Length = 373
Score = 60.5 bits (145), Expect = 2e-09
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTGG GF+ +I LVE+ I LDK+ + + K ++GDI D
Sbjct: 7 LVTGGGGFLGQRIICLLVEEKDLQEIRVLDKVFRPEVREEFSKLQSKIKLTLLEGDILDE 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+K + +V+H A+ V + R VNV GT +LL A +A V FI+
Sbjct: 67 QCLK--GACQGTSVVIHTASVIDVRNAVPRE-TIMNVNVKGTQLLLEACVQASVPVFIHT 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
ST EV G + +E +E ++PY SK AE
Sbjct: 124 STIEVAGPNSYREIIQDGREEEHHESAWSSPYPYSKKLAE 163
>ref|NP_001073800.1| GDP-mannose 4,6 dehydratase [Bos taurus].
Length = 372
Score = 59.3 bits (142), Expect = 5e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Frame = +2
Query: 251 NYKFIQGDICDSH-FVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLS 427
N K GD+ DS VK++ E + +I + AQ+HV +SF A V+ GT LL
Sbjct: 79 NMKLHYGDLTDSTCLVKIINEVKPTEIY-NLGAQSHVKISFDLAEYTADVDGVGTLRLLD 137
Query: 428 AAHEARV---EKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERY 598
A + +F ST E+YG + E++P P +PY ++K A V ++ E Y
Sbjct: 138 AVKTCGLISSVRFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY 197
Query: 599 KF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
++ S G + K+ + +C G+ R++ +A D VE
Sbjct: 198 NLFAVNGILFNHESPRRGANFVTRKISRSVAKIHLGQLECFSLGNLDAKRDWGHAKDYVE 257
Query: 767 AFLTVLKKGKP-------GEIYNIGTNFEMSVL 844
A +L+K +P GE++++ E S L
Sbjct: 258 AMWLMLQKDEPEDFVIATGEVHSVREFVEKSFL 290
>ref|NP_001029868.1| 3 beta-hydroxysteroid dehydrogenase type 7 [Bos taurus].
Length = 368
Score = 50.1 bits (118), Expect = 3e-06
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTGG GF+ HV+ L++ P + + L L+ L+T IQGD+ +
Sbjct: 13 LVTGGCGFLGEHVVRMLLQREPRLRELRIFDLHLGPWLEELKT--GPVQVTAIQGDVTQA 70
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY--VNVYGTHVLLSAAHEARVEKFI 460
H ++ +V+H A V F + T VNV GT ++ A + I
Sbjct: 71 H--EVAAAVAGAHVVIHTAGLVDV---FGKTSPETIHEVNVQGTQNVIEACVQTGTRFLI 125
Query: 461 YVSTDEVYGGSLDKE----FDESSPKQPT--NPYASSKAAAECFV 577
Y S+ EV G ++ + +E++P + +PY SKA AE V
Sbjct: 126 YTSSMEVVGPNIKGQPFYRGNENTPYEAVHRHPYPCSKALAEQLV 170
>ref|NP_001030559.1| sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating [Bos
taurus].
Length = 356
Score = 48.5 bits (114), Expect = 9e-06
Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 5/232 (2%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGD 274
AKR V GG GF+ H++ L+ Y ++ ++ D +F GD
Sbjct: 20 AKRCTVIGGCGFLGQHMVEQLL------------ARGYAVNVFDIRQGFDNPRVQFFLGD 67
Query: 275 ICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVYGTHVLLSAAHEARVE 451
+C L + + V H A+ F E Y VN GT ++ EA V+
Sbjct: 68 LCSQQ--DLYPALKGVSTVFHCASPP----PFNNNKELFYRVNYIGTKNVIETCKEAGVQ 121
Query: 452 KFIYVSTDEVYGGSLD-KEFDESSP--KQPTNPYASSKAAAECFVQSYWERYK-FPVVIT 619
K I S+ V +D K E P +P + Y +K E V + K F
Sbjct: 122 KLILTSSASVIFEGVDIKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEKNFLTTAI 181
Query: 620 RSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFL 775
R ++GP +++P I + + + G+G +F + +VV +
Sbjct: 182 RPHGIFGPRD--PQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHI 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,400,452
Number of extensions: 891225
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 10
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542640.2| PREDICTED: similar to dTDP-D-glucose 4,6-dehydr... 538 e-153
Alignment gi|XP_544499.1| PREDICTED: similar to UDP-galactose-4-epimerase... 87 2e-17
Alignment gi|XP_538439.2| PREDICTED: similar to UDP-glucuronate decarboxy... 84 2e-16
Alignment gi|NP_001010954.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 60 4e-09
Alignment gi|XP_545311.2| PREDICTED: similar to GDP-mannose 4,6-dehydrata... 59 5e-09
Alignment gi|XP_547037.1| PREDICTED: similar to 3 beta-hydroxy-delta 5-C2... 54 2e-07
Alignment gi|XP_546811.2| PREDICTED: similar to NAD(P) dependent steroid ... 53 4e-07
>ref|XP_542640.2| PREDICTED: similar to dTDP-D-glucose 4,6-dehydratase [Canis
familiaris].
Length = 514
Score = 538 bits (1387), Expect = e-153
Identities = 266/282 (94%), Positives = 274/282 (97%), Gaps = 5/282 (1%)
Frame = +2
Query: 17 YGAQAL-----LSWEMTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYM 181
YGA AL LSWEM++A RAEPLGPP+SFAKR+LVTGGAGFIASHVIVSLVEDYPNYM
Sbjct: 145 YGAGALRRRAQLSWEMSSAGRAEPLGPPSSFAKRLLVTGGAGFIASHVIVSLVEDYPNYM 204
Query: 182 IVNLDKLDYCASLKNLETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVD 361
I+NLDKLDYCASLKNLETIS+KQNYKFIQGDIC+SHFVKLLFETEKIDIVLHFAAQTHVD
Sbjct: 205 IINLDKLDYCASLKNLETISNKQNYKFIQGDICNSHFVKLLFETEKIDIVLHFAAQTHVD 264
Query: 362 LSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNP 541
LSFVRAFEFTYVNVYGTHVL+SAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNP
Sbjct: 265 LSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNP 324
Query: 542 YASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGS 721
YASSKAAAECFVQSYWERYKFP VITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGS
Sbjct: 325 YASSKAAAECFVQSYWERYKFPAVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGS 384
Query: 722 GLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQ 847
GLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQ
Sbjct: 385 GLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQ 426
Score = 83.2 bits (204), Expect = 3e-16
Identities = 40/53 (75%), Positives = 43/53 (81%)
Frame = +3
Query: 816 LGPILKCQFSSLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMESEKI 974
+G + LAKELIQLIKET SESEME WVDYVNDRPTNDMRYPM+SEKI
Sbjct: 416 IGTNFEMSVLQLAKELIQLIKETSSESEMETWVDYVNDRPTNDMRYPMKSEKI 468
>ref|XP_544499.1| PREDICTED: similar to UDP-galactose-4-epimerase [Canis familiaris].
Length = 348
Score = 87.0 bits (214), Expect = 2e-17
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 29/280 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVE-DYPNYMIVNLD-----KLDYCASLKNLETISDKQNY 256
A++VLVTGGAG+I SH ++ L+E Y +I N K SL+ ++ ++ + +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGKGSMPESLQRVQELTGR-SV 60
Query: 257 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAH 436
+F + DI D ++ LFE V+HFA V S + ++ VN+ G+ LL
Sbjct: 61 EFEEMDILDQAALQRLFEKHSFTAVIHFAGLKAVGESVQKPLDYYRVNLTGSIQLLEIMR 120
Query: 437 EARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-FPV 610
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKYFIEEMIRDLCQADKAWNA 180
Query: 611 VITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQTR 736
V+ R N G H P ++P ++S + R+ ++ G R
Sbjct: 181 VLLRYFNPIGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREVLNVFGNDYDTEDGTGVR 239
Query: 737 NFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQ 847
++++ D+ + + L+K K IYN+GT SVLQ
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQ 279
>ref|XP_538439.2| PREDICTED: similar to UDP-glucuronate decarboxylase 1 [Canis
familiaris].
Length = 531
Score = 84.0 bits (206), Expect = 2e-16
Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+L+TGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 200 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 256
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 257 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 308
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 309 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 368
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 369 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 428
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 429 SSPV-NLGNPEEHTILEFAQ 447
>ref|NP_001010954.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase [Canis
lupus familiaris].
Length = 373
Score = 59.7 bits (143), Expect = 4e-09
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ ++ L E+ I LDK L+ + K ++GDI D
Sbjct: 7 LVTGAGGFLGQRIVHLLAEEKELQEIRALDKAFRPELLEEFSKLQSKTKLTMVEGDILDE 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+K + +V+H A+ V ++ + VN+ GT +LL A +A V FIY
Sbjct: 67 QCLKR--ACQGTSVVIHTASVIDV-MNVIHRETIMNVNLKGTQLLLEACAQASVPIFIYT 123
Query: 467 STDEVYGGSLDKEFDESSPKQP------TNPYASSKAAAE 568
ST EV G + ++ +++ ++ + PY SK AE
Sbjct: 124 STIEVAGPNSYRDIIQNAHEEEHLESTWSAPYPYSKKLAE 163
>ref|XP_545311.2| PREDICTED: similar to GDP-mannose 4,6-dehydratase [Canis
familiaris].
Length = 382
Score = 59.3 bits (142), Expect = 5e-09
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 15/213 (7%)
Frame = +2
Query: 251 NYKFIQGDICDSH-FVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLS 427
N K GD+ DS VK++ E + +I + AQ+HV +SF A V+ GT LL
Sbjct: 99 NMKLHYGDLTDSTCLVKIINEVKPTEIY-NLGAQSHVKISFDLAEYTADVDGVGTLRLLD 157
Query: 428 AAHEARV---EKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERY 598
A + KF ST E+YG + E++P P +PY ++K A V ++ E Y
Sbjct: 158 AVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY 217
Query: 599 KF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
++ S G + K+ + +C G+ R++ +A D VE
Sbjct: 218 NLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 277
Query: 767 AFLTVLKKGKP-------GEIYNIGTNFEMSVL 844
A +L+ +P GE++++ E S L
Sbjct: 278 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFL 310
>ref|XP_547037.1| PREDICTED: similar to 3 beta-hydroxy-delta 5-C27-steroid
oxidoreductase [Canis familiaris].
Length = 369
Score = 54.3 bits (129), Expect = 2e-07
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTGG GF+ HV+ L++ P + + + L A L+ L+T IQGD+ +
Sbjct: 13 LVTGGCGFLGEHVVRMLLQREPRLLELRVFDLHLGAWLEELKT--GPVQVTAIQGDVTQA 70
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY--VNVYGTHVLLSAAHEARVEKFI 460
H ++ +V+H A V F RA T VNV GT ++ A + +
Sbjct: 71 H--EVAAAVAGAHVVIHTAGLVDV---FGRASPETIYEVNVQGTKNVIEACVQTGTRFLV 125
Query: 461 YVSTDEVYGGSLDKEF----DESSPKQPT--NPYASSKAAAECFV 577
Y S+ EV G ++ +E +P + +PY SKA AE V
Sbjct: 126 YTSSMEVVGPNIKGHHFYRGNEDTPYEAVHRHPYPCSKAQAERLV 170
>ref|XP_546811.2| PREDICTED: similar to NAD(P) dependent steroid dehydrogenase-like
[Canis familiaris].
Length = 393
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 11/235 (4%)
Frame = +2
Query: 104 VLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICD 283
VL+TGG G+ + +L + + ++ ++ T S + +FI+GDI
Sbjct: 11 VLITGGGGYFGFRLGCALNQKGFHVILFDISS----------PTHSIPEGIEFIRGDIRH 60
Query: 284 SHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIY 463
V+ F+ + V H A+ + VNV GT +L V + +Y
Sbjct: 61 LSDVEKAFQDADVTCVFHIASYGMSGREQLNRSLIEEVNVGGTDNILQVCRRRGVPRLVY 120
Query: 464 VST-DEVYGGSLDKEFDESSPKQP----TNPYASSKAAAECFV--QSYWERYKFPVVI-- 616
ST + ++GG + + DES P P + Y+ +K+ AE V S + V+
Sbjct: 121 TSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEASGTTLLRSDGVLRT 180
Query: 617 --TRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFL 775
R + +YGP + ++ +P+ +S ++ ++G F++ ++V+A +
Sbjct: 181 CALRPAGIYGPGE--QRHLPRIVSYIERGLFKFVYGDPRSLVEFVHVDNLVQAHI 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,784,506
Number of extensions: 912903
Number of successful extensions: 2634
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2623
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055120.1| dTDP-D-glucose 4,6-dehydratase [Homo sapiens]. 514 e-146
Alignment gi|NP_001008217.1| UDP-glucose 4-epimerase [Homo sapiens]. 87 3e-17
Alignment gi|NP_000394.2| UDP-glucose 4-epimerase [Homo sapiens]. 87 3e-17
Alignment gi|NP_001121093.1| UDP-glucose 4-epimerase [Homo sapiens]. 87 3e-17
Alignment gi|NP_079352.2| UDP-glucuronic acid decarboxylase 1 [Homo sapie... 84 2e-16
Alignment gi|NP_660151.2| short-chain dehydrogenase/reductase family 42E ... 64 2e-10
Alignment gi|NP_000853.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4... 60 3e-09
Alignment gi|NP_001491.1| GDP-mannose 4,6 dehydratase [Homo sapiens]. 60 3e-09
Alignment gi|NP_001159592.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 59 5e-09
Alignment gi|NP_000189.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4... 59 5e-09
>ref|NP_055120.1| dTDP-D-glucose 4,6-dehydratase [Homo sapiens].
Length = 350
Score = 514 bits (1325), Expect = e-146
Identities = 252/267 (94%), Positives = 259/267 (97%)
Frame = +2
Query: 47 MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN 226
M+ A EP G P FAKRVLVTGGAGFIASH+IVSLVEDYPNYMI+NLDKLDYCASLKN
Sbjct: 1 MSAACWEEPWGLPGGFAKRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKN 60
Query: 227 LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 406
LETIS+KQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY
Sbjct: 61 LETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 120
Query: 407 GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 586
GTHVL+SAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY
Sbjct: 121 GTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 180
Query: 587 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
WE+YKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE
Sbjct: 181 WEQYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 240
Query: 767 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 847
AFLTVLKKGKPGEIYNIGTNFEMSV+Q
Sbjct: 241 AFLTVLKKGKPGEIYNIGTNFEMSVVQ 267
Score = 88.6 bits (218), Expect = 8e-18
Identities = 42/54 (77%), Positives = 45/54 (83%)
Frame = +3
Query: 816 LGPILKCQFSSLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMESEKIH 977
+G + LAKELIQLIKET SESEMENWVDYVNDRPTNDMRYPM+SEKIH
Sbjct: 257 IGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIH 310
>ref|NP_001008217.1| UDP-glucose 4-epimerase [Homo sapiens].
Length = 348
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 31/285 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYC--------ASLKNLETISDKQ 250
A++VLVTGGAG+I SH ++ L+E Y+ V +D SL+ ++ ++ +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR- 58
Query: 251 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSA 430
+ +F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 431 AHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-F 604
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 605 PVVITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQ 730
V+ R N G H P ++P ++S + R+ ++ G
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 731 TRNFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
R++++ D+ + + L+K K IYN+GT SVLQ Q
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQ 282
>ref|NP_000394.2| UDP-glucose 4-epimerase [Homo sapiens].
Length = 348
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 31/285 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYC--------ASLKNLETISDKQ 250
A++VLVTGGAG+I SH ++ L+E Y+ V +D SL+ ++ ++ +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR- 58
Query: 251 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSA 430
+ +F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 431 AHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-F 604
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 605 PVVITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQ 730
V+ R N G H P ++P ++S + R+ ++ G
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 731 TRNFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
R++++ D+ + + L+K K IYN+GT SVLQ Q
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQ 282
>ref|NP_001121093.1| UDP-glucose 4-epimerase [Homo sapiens].
Length = 348
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 31/285 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYC--------ASLKNLETISDKQ 250
A++VLVTGGAG+I SH ++ L+E Y+ V +D SL+ ++ ++ +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR- 58
Query: 251 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSA 430
+ +F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 431 AHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-F 604
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 605 PVVITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQ 730
V+ R N G H P ++P ++S + R+ ++ G
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 731 TRNFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
R++++ D+ + + L+K K IYN+GT SVLQ Q
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQ 282
>ref|NP_079352.2| UDP-glucuronic acid decarboxylase 1 [Homo sapiens].
Length = 420
Score = 84.0 bits (206), Expect = 2e-16
Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+L+TGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 198 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 318 SSPV-NLGNPEEHTILEFAQ 336
>ref|NP_660151.2| short-chain dehydrogenase/reductase family 42E member 1 [Homo
sapiens].
Length = 393
Score = 63.9 bits (154), Expect = 2e-10
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 14/248 (5%)
Frame = +2
Query: 74 LGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQN 253
+ P S + VL+TGG+G+ + +L ++ + ++ ++ +TI +
Sbjct: 1 MDPKRSQKESVLITGGSGYFGFRLGCALNQNGVHVILFDISS--------PAQTIPE--G 50
Query: 254 YKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAA 433
KFIQGDI V+ F+ + V H A+ + VNV GT +L
Sbjct: 51 IKFIQGDIRHLSDVEKAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVC 110
Query: 434 HEARVEKFIYVST-DEVYGGSLDKEFDESSPKQP----TNPYASSKAAAECFVQSYWERY 598
RV + +Y ST + ++GG + + DES P P + Y+ +K+ AE Q E
Sbjct: 111 QRRRVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAE---QKVLEAN 167
Query: 599 KFPV---------VITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYA 751
P+ R + +YGP + ++ +P+ +S ++ ++G F++
Sbjct: 168 ATPLDRGDGVLRTCALRPAGIYGPGE--QRHLPRIVSYIEKGLFKFVYGDPRSLVEFVHV 225
Query: 752 TDVVEAFL 775
++V+A +
Sbjct: 226 DNLVQAHI 233
>ref|NP_000853.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1
[Homo sapiens].
Length = 373
Score = 60.1 bits (144), Expect = 3e-09
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK + + +K ++GDI D
Sbjct: 7 LVTGAGGFLGQRIIRLLVKEKELKEIRVLDKAFGPELREEFSKLQNKTKLTVLEGDILDE 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
F+K + + +++H A V VNV GT +LL A +A V FIY
Sbjct: 67 PFLKRA--CQDVSVIIHTACIIDV-FGVTHRESIMNVNVKGTQLLLEACVQASVPVFIYT 123
Query: 467 STDEVYGGSLDKEF----DESSPKQPT--NPYASSKAAAE 568
S+ EV G + KE E P + T PY SK AE
Sbjct: 124 SSIEVAGPNSYKEIIQNGHEEEPLENTWPAPYPHSKKLAE 163
>ref|NP_001491.1| GDP-mannose 4,6 dehydratase [Homo sapiens].
Length = 372
Score = 60.1 bits (144), Expect = 3e-09
Identities = 72/276 (26%), Positives = 118/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 74 LGPPNSFAKRVLVTGGAGFIASHVIVSLVED-YPNYMIVNLDKLDYCASLKNLETISDKQ 250
+G P + A L+TG G S++ L+E Y + IV +++L
Sbjct: 19 MGKPRNVA---LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH 75
Query: 251 ---NYKFIQGDICDSH-FVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV 418
N K GD+ DS VK++ E + +I + AQ+HV +SF A V+ GT
Sbjct: 76 IEGNMKLHYGDLTDSTCLVKIINEVKPTEIY-NLGAQSHVKISFDLAEYTADVDGVGTLR 134
Query: 419 LLSAAHEARV---EKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYW 589
LL A + KF ST E+YG + E++P P +PY ++K A V ++
Sbjct: 135 LLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFR 194
Query: 590 ERYKF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATD 757
E Y ++ S G + K+ + +C G+ R++ +A D
Sbjct: 195 EAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKD 254
Query: 758 VVEAFLTVLKKGKP-------GEIYNIGTNFEMSVL 844
VEA +L+ +P GE++++ E S L
Sbjct: 255 YVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFL 290
>ref|NP_001159592.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2
[Homo sapiens].
Length = 372
Score = 59.3 bits (142), Expect = 5e-09
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG G + ++ LVE+ I LDK + + ++ ++GDI D
Sbjct: 6 LVTGAGGLLGQRIVRLLVEEKELKEIRALDKAFRPELREEFSKLQNRTKLTVLEGDILDE 65
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
F+K + + +V+H A V VNV GT +LL A +A V FIY
Sbjct: 66 PFLKRA--CQDVSVVIHTACIIDV-FGVTHRESIMNVNVKGTQLLLEACVQASVPVFIYT 122
Query: 467 STDEVYGGSLDKEF----DESSPKQPT--NPYASSKAAAE 568
S+ EV G + KE E P + T PY SK AE
Sbjct: 123 SSIEVAGPNSYKEIIQNGHEEEPLENTWPTPYPYSKKLAE 162
>ref|NP_000189.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2
[Homo sapiens].
Length = 372
Score = 59.3 bits (142), Expect = 5e-09
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG G + ++ LVE+ I LDK + + ++ ++GDI D
Sbjct: 6 LVTGAGGLLGQRIVRLLVEEKELKEIRALDKAFRPELREEFSKLQNRTKLTVLEGDILDE 65
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
F+K + + +V+H A V VNV GT +LL A +A V FIY
Sbjct: 66 PFLKRA--CQDVSVVIHTACIIDV-FGVTHRESIMNVNVKGTQLLLEACVQASVPVFIYT 122
Query: 467 STDEVYGGSLDKEF----DESSPKQPT--NPYASSKAAAE 568
S+ EV G + KE E P + T PY SK AE
Sbjct: 123 SSIEVAGPNSYKEIIQNGHEEEPLENTWPTPYPYSKKLAE 162
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,339,784
Number of extensions: 911067
Number of successful extensions: 2461
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2444
Number of HSP's successfully gapped: 13
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083854.3| dTDP-D-glucose 4,6-dehydratase [Mus musculus]. 500 e-142
Alignment gi|NP_848476.1| UDP-glucose 4-epimerase [Mus musculus]. 86 3e-17
Alignment gi|NP_080706.1| UDP-glucuronic acid decarboxylase 1 [Mus muscul... 84 2e-16
Alignment gi|NP_666153.1| GDP-mannose 4,6 dehydratase [Mus musculus]. 59 6e-09
Alignment gi|NP_032319.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4... 54 1e-07
Alignment gi|NP_694873.2| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4... 54 1e-07
Alignment gi|NP_001155217.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 53 3e-07
Alignment gi|NP_001155216.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 53 3e-07
Alignment gi|NP_001155215.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 53 3e-07
Alignment gi|NP_001155214.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 53 3e-07
>ref|NP_083854.3| dTDP-D-glucose 4,6-dehydratase [Mus musculus].
Length = 355
Score = 500 bits (1287), Expect = e-142
Identities = 245/267 (91%), Positives = 255/267 (95%)
Frame = +2
Query: 47 MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN 226
M+ A R E GPP SFAKRVLVTGGAGFIASHVIVSLVEDYP+YMIVNLDKLDYCASLKN
Sbjct: 1 MSAASREERSGPPGSFAKRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKN 60
Query: 227 LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 406
LE +S+KQNYKFIQGDICDSHFVKLLFE EKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY
Sbjct: 61 LEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 120
Query: 407 GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 586
GTHVL++AA+EA VEKFIYVSTDEVYGGSLD+EFDESSPKQPTNPYASSKAAAECFVQSY
Sbjct: 121 GTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFVQSY 180
Query: 587 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQ RNFLYA DVVE
Sbjct: 181 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVE 240
Query: 767 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 847
AFLTVL KG+PGEIYNIGTNFEMSV+Q
Sbjct: 241 AFLTVLTKGEPGEIYNIGTNFEMSVVQ 267
Score = 79.7 bits (195), Expect = 3e-15
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 816 LGPILKCQFSSLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMESEKIH 977
+G + LAKELIQLIKET SESE E+WVDYV+DRP NDMRYPM+SEKIH
Sbjct: 257 IGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIH 310
>ref|NP_848476.1| UDP-glucose 4-epimerase [Mus musculus].
Length = 347
Score = 86.3 bits (212), Expect = 3e-17
Identities = 78/284 (27%), Positives = 126/284 (44%), Gaps = 31/284 (10%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCA--------SLKNLETISDKQN 253
++VLVTGGAG+I SH ++ L+E Y V +D SL+ ++ ++ + +
Sbjct: 2 EKVLVTGGAGYIGSHTVLELLE--AGYSPVVIDNFHNAIRGEDSMPESLRRVQELTGR-S 58
Query: 254 YKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAA 433
+F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 59 VEFEEMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 118
Query: 434 HEARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAE------CFVQSYWE 592
V+ ++ S+ VYG DE+ P TNPY SK E C + W
Sbjct: 119 RAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCRADTAWN 178
Query: 593 ----RYKFPVVITRSSNV-YGPHQYPEKVIPKFISLLQHNRKCCIH--------GSGLQT 733
RY P+ S + P P ++P ++S + R+ ++ G
Sbjct: 179 AVLLRYFNPIGAHASGRIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGDDYATEDGTGV 237
Query: 734 RNFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQPCQ 856
R++++ D+ + + LKK K YN+GT SVLQ Q
Sbjct: 238 RDYIHVVDLAKGHIAALKKLKEQCGCRTYNLGTGTGYSVLQMVQ 281
>ref|NP_080706.1| UDP-glucuronic acid decarboxylase 1 [Mus musculus].
Length = 420
Score = 84.0 bits (206), Expect = 2e-16
Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+L+TGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 198 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 318 SSPV-NLGNPEEHTILEFAQ 336
>ref|NP_666153.1| GDP-mannose 4,6 dehydratase [Mus musculus].
Length = 372
Score = 58.9 bits (141), Expect = 6e-09
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 19/275 (6%)
Frame = +2
Query: 77 GPPNSFAKRVLVTGGAGFIASHVIVSLVED-YPNYMIVNLDKLDYCASLKNLETISDKQ- 250
G K L+TG G S++ L+E Y + IV +++L
Sbjct: 17 GEMGKLRKVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHI 76
Query: 251 --NYKFIQGDICDSH-FVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVL 421
N K GD+ DS VK++ E + +I + AQ+HV +SF A V+ GT L
Sbjct: 77 EGNMKLHYGDLTDSTCLVKIINEVKPTEIY-NLGAQSHVKISFDLAEYTADVDGVGTLRL 135
Query: 422 LSAAHEARV---EKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWE 592
L A + KF ST E+YG + E++P P +PY ++K A V ++ E
Sbjct: 136 LDAIKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFRE 195
Query: 593 RYKF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDV 760
Y ++ S G + K+ + +C G+ R++ +A D
Sbjct: 196 AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 255
Query: 761 VEAFLTVLKKGKP-------GEIYNIGTNFEMSVL 844
VEA +L+ +P GE++++ E S +
Sbjct: 256 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFM 290
>ref|NP_032319.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1
[Mus musculus].
Length = 373
Score = 54.3 bits (129), Expect = 1e-07
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ + LDK+ + + + K ++GDI D+
Sbjct: 7 LVTGAGGFVGQRIIKMLVQEKELQEVRALDKVFRPETKEEFSKLQTKTKVTVLEGDILDA 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QCLRR--ACQGISVVIHTAAVIDV-TGVIPRQTILDVNLKGTQNLLEACVQASVPAFIFC 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + K+ +++ ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKKIVLNGHEEQNHESTWSDPYPYSKKMAE 163
>ref|NP_694873.2| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2
[Mus musculus].
Length = 373
Score = 54.3 bits (129), Expect = 1e-07
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK+ + K + ++GDI D+
Sbjct: 7 LVTGAGGFLGQRIIQLLVQEEDLEEIRVLDKVFRPETRKEFFNLETSIKVTVLEGDILDT 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QYLRR--ACQGISVVIHTAAIIDV-TGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFS 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + KE +E ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKEIVLNGHEEECHESTWSDPYPYSKKMAE 163
>ref|NP_001155217.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 3
isoform 1 [Mus musculus].
Length = 373
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK+ + + + ++GDI D+
Sbjct: 7 LVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDT 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QYLRR--ACQGISVVIHTAAIIDV-TGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFS 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + K+ DE ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKDIVLNGHEDEHRESTWSDPYPYSKKMAE 163
>ref|NP_001155216.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 3
isoform 1 [Mus musculus].
Length = 373
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK+ + + + ++GDI D+
Sbjct: 7 LVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDT 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QYLRR--ACQGISVVIHTAAIIDV-TGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFS 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + K+ DE ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKDIVLNGHEDEHRESTWSDPYPYSKKMAE 163
>ref|NP_001155215.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 3
isoform 1 [Mus musculus].
Length = 373
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK+ + + + ++GDI D+
Sbjct: 7 LVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDT 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QYLRR--ACQGISVVIHTAAIIDV-TGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFS 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + K+ DE ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKDIVLNGHEDEHRESTWSDPYPYSKKMAE 163
>ref|NP_001155214.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 3
isoform 1 [Mus musculus].
Length = 373
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTG GF+ +I LV++ I LDK+ + + + ++GDI D+
Sbjct: 7 LVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDT 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+++ + I +V+H AA V + VN+ GT LL A +A V FI+
Sbjct: 67 QYLRR--ACQGISVVIHTAAIIDV-TGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFS 123
Query: 467 STDEVYGGSLDKEF------DESSPKQPTNPYASSKAAAE 568
S+ +V G + K+ DE ++PY SK AE
Sbjct: 124 SSVDVAGPNSYKDIVLNGHEDEHRESTWSDPYPYSKKMAE 163
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,195,638
Number of extensions: 783021
Number of successful extensions: 2165
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 22
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131096.2| PREDICTED: dTDP-D-glucose 4,6-dehydratase-li... 542 e-155
Alignment gi|XP_003356250.1| PREDICTED: UDP-glucose 4-epimerase [Sus scro... 85 7e-17
Alignment gi|XP_003124905.2| PREDICTED: UDP-glucuronic acid decarboxylase... 85 7e-17
Alignment gi|NP_001004049.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-... 55 6e-08
Alignment gi|XP_003124535.1| PREDICTED: 3 beta-hydroxysteroid dehydrogena... 54 2e-07
>ref|XP_003131096.2| PREDICTED: dTDP-D-glucose 4,6-dehydratase-like [Sus scrofa].
Length = 355
Score = 542 bits (1397), Expect = e-155
Identities = 267/267 (100%), Positives = 267/267 (100%)
Frame = +2
Query: 47 MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN 226
MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN
Sbjct: 1 MTTAVRAEPLGPPNSFAKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKN 60
Query: 227 LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 406
LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY
Sbjct: 61 LETISDKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVY 120
Query: 407 GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 586
GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY
Sbjct: 121 GTHVLLSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSY 180
Query: 587 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 766
WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE
Sbjct: 181 WERYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVE 240
Query: 767 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 847
AFLTVLKKGKPGEIYNIGTNFEMSVLQ
Sbjct: 241 AFLTVLKKGKPGEIYNIGTNFEMSVLQ 267
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/54 (79%), Positives = 46/54 (85%)
Frame = +3
Query: 816 LGPILKCQFSSLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMESEKIH 977
+G + LAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPM+SEKIH
Sbjct: 257 IGTNFEMSVLQLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRYPMKSEKIH 310
>ref|XP_003356250.1| PREDICTED: UDP-glucose 4-epimerase [Sus scrofa].
Length = 348
Score = 84.7 bits (208), Expect = 7e-17
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 31/282 (10%)
Frame = +2
Query: 95 AKRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCA--------SLKNLETISDKQ 250
A++VLVTGGAG+I SH ++ L+E Y V +D SL+ ++ ++ +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLE--AGYSPVVIDNFHNAIRGGSSMPESLRRVQELTGR- 58
Query: 251 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSA 430
+ +F + DI D ++ LF+ V+HFA V S + ++ VN+ GT LL
Sbjct: 59 SVEFEEMDILDQAALQRLFKKYHFVAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 431 AHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQP-TNPYASSKAAAECFVQSYWERYK-F 604
V+ ++ S+ VYG DE+ P TNPY SK E ++ + K +
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAW 178
Query: 605 PVVITRSSNVYGPHQ----------YPEKVIPKFISLLQHNRKCCIH--------GSGLQ 730
V+ R N G H P ++P ++S + R+ ++ G
Sbjct: 179 NAVLLRYFNPIGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 731 TRNFLYATDVVEAFLTVLKKGKPG---EIYNIGTNFEMSVLQ 847
R++++ D+ + + L+K K IYN+GT SVLQ
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQ 279
>ref|XP_003124905.2| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Sus scrofa].
Length = 420
Score = 84.7 bits (208), Expect = 7e-17
Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Frame = +2
Query: 98 KRVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDI 277
KR+L+TGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 278 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 457
+ ++ ++D + H A+ + N GT +L A +
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
Query: 458 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 622
+ ST EVYG + + +P P Y K AE +Y ++ V + R
Sbjct: 198 LLASTSEVYGDPEVHPQTEDYWGHVNPVGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
Query: 623 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 796
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
Query: 797 PGEIYNIGTNFEMSVLQPCQ 856
+ N+G E ++L+ Q
Sbjct: 318 SSPV-NLGNPEEHTILEFAQ 336
>ref|NP_001004049.1| 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase [Sus
scrofa].
Length = 373
Score = 55.1 bits (131), Expect = 6e-08
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTGG GF+ ++ L+E+ I LDK+ + + K ++GDI D
Sbjct: 7 LVTGGGGFLGQRIVHLLLEEKDLQEIRVLDKVFKPEVREEFSKLQSKIKLTMLEGDILDE 66
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKFIYV 466
+K + +V+H A+ V ++ V VNV GT +LL A +A V FI+
Sbjct: 67 QCLK--GACQGASVVIHTASIIDV-VNAVGRETVMKVNVKGTQLLLEACVQASVPVFIHT 123
Query: 467 STDEVYGGSLDKEFDESSPKQP------TNPYASSKAAAE 568
S+ EV G + +E +++ ++ + PY SK AE
Sbjct: 124 SSIEVAGPNSYREVIQNACEEDRLETAWSAPYPLSKKLAE 163
>ref|XP_003124535.1| PREDICTED: 3 beta-hydroxysteroid dehydrogenase type 7 [Sus scrofa].
Length = 369
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Frame = +2
Query: 107 LVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDICDS 286
LVTGG GF+ HV+ L++ P + + L L+ LET IQGD+ +
Sbjct: 13 LVTGGCGFLGEHVVRMLLQQEPRLCELRVFDLHLGPWLEELET--GPVQVTAIQGDVTQA 70
Query: 287 HFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY--VNVYGTHVLLSAAHEARVEKFI 460
H ++ +V+H A V F RA T VNV GT ++ A + +
Sbjct: 71 H--EVAAAVAGAHVVIHTAGLVDV---FGRASPETIHEVNVQGTQNVIEACVQNGTRFLV 125
Query: 461 YVSTDEVYGGSLDKE----FDESSPKQPT--NPYASSKAAAECFV 577
Y S+ EV G ++ + +E++P + +PY SKA AE V
Sbjct: 126 YTSSMEVVGPNIKGQPFYRGNENTPYEAAHRHPYPRSKALAERLV 170
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,673,847
Number of extensions: 567108
Number of successful extensions: 1466
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007542
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 317 6e-84
Sscrofa_Chr18 92 7e-16
>Sscrofa_Chr11
|| Length = 87690581
Score = 317 bits (160), Expect = 6e-84
Identities = 167/168 (99%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 705 gctgcattcatggatcagggcttcaaacaagaaatttcctttatgctaccgatgtagtgg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69878098 gctgcattcatggatcagggcttcaaacaagaaatttcctttatgctaccgatgtagtgg 69878157
Query: 765 aagcatttctcactgtcctcaaaaagggaaaacctggtgaaatttataacattgggacca 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69878158 aagcatttctcactgtcctcaaaaagggaaaacctggtgaaatttataacattgggacca 69878217
Query: 825 attttgaaatgtcagttctccagccttgccaaagaactaatacaactg 872
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 69878218 attttgaaatgtcagttctccag-cttgccaaagaactaatacaactg 69878264
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 357 tagatctttcatttgtccgtgcctttgaatttacctatgttaatgtttacggcactcacg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69871202 tagatctttcatttgtccgtgcctttgaatttacctatgttaatgtttacggcactcacg 69871261
Query: 417 ttttgctaagtgctgcacatgaagccagagtggagaaatttatttatgtcagcacagatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69871262 ttttgctaagtgctgcacatgaagccagagtggagaaatttatttatgtcagcacagatg 69871321
Query: 477 aggtgtatggaggcagccttgataagg 503
|||||||||||||||||||||||||||
Sbjct: 69871322 aggtgtatggaggcagccttgataagg 69871348
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 ctacaacctggcgctttacggtgcccaagcactgctgagctgggagatgacgactgcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69863245 ctacaacctggcgctttacggtgcccaagcactgctgagctgggagatgacgactgcagt 69863304
Query: 61 ccgggctgagcccttgggtcctcctaacagctttgcgaagcgggtcctggtgaccggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69863305 ccgggctgagcccttgggtcctcctaacagctttgcgaagcgggtcctggtgaccggggg 69863364
Query: 121 tgctggtttcat 132
||||||||||||
Sbjct: 69863365 tgctggtttcat 69863376
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 501 aggaatttgatgaatcttcgcccaaacaacctacaaatccttatgcctcatctaaagcag 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69873670 aggaatttgatgaatcttcgcccaaacaacctacaaatccttatgcctcatctaaagcag 69873729
Query: 561 ctgctgagtgttttgtacagtcttactgggaacgatataag 601
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 69873730 ctgctgagtgttttgtacagtcttactgggaacgatataag 69873770
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 260 tttatacagggtgacatatgtgattctcactttgtgaaactactttttgaaacagaaaaa 319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69868661 tttatatagggtgacatatgtgattctcactttgtgaaactactttttgaaacagaaaaa 69868720
Query: 320 atagacatagtgctacattttgctgcgcaaacacatgtag 359
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69868721 atagacatagtgctacattttgctgcgcaaacacatgtag 69868760
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 197 aagctggattactgtgcaagcctgaagaaccttgaaaccatttctgataaacaaaattac 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69866655 aagctggattactgtgcaagcctgaagaaccttgaaaccatttctgataaacaaaattac 69866714
Query: 257 aaatttatacagg 269
|||||||||||||
Sbjct: 69866715 aaatttatacagg 69866727
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 133 tgcatcacatgtgattgtctctctagtagaagattatccaaactatatgatcgtaaatct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69865349 tgcatcacatgtgattgtctctctagtagaagattatccaaactatatgatcgtaaatct 69865408
Query: 193 agacaag 199
|||||||
Sbjct: 69865409 agacaag 69865415
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 598 taagtttccagttgtcatcacccgaagcagtaatgtttatggaccccatcaatatccaga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69874961 taagtttccagttgtcatcacccgaagcagtaatgtttatggaccccatcaatatccaga 69875020
Query: 658 aaaggt 663
||||||
Sbjct: 69875021 aaaggt 69875026
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 872 gatcaaagagaccaaatcagagtccgaaatggaaaactgggtagattatgttaatgacag 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69879926 gatcaaagagaccaaatcagagtccgaaatggaaaactgggtagattatgttaatgacag 69879985
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 660 aggttattccaaaatttatatctttactacaacacaacaggaaatg 705
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69877022 aggttattccaaaatttatatctttactacaacacaacaggaaatg 69877067
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 930 agacctaccaatgacatgagatatccaatggagtccgagaaaatacatgg 979
|||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 69880867 agacctaccaatgacatgagatatccaatgaagtcagagaaaatacatgg 69880916
>Sscrofa_Chr18
|| Length = 61220071
Score = 91.7 bits (46), Expect = 7e-16
Identities = 89/102 (87%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 260 tttatacagggtgacatatgtgattctcactttgtgaaactactttttgaaacagaaaaa 319
|||||| ||||||| |||||||||||||| || |||||||||||||| |||||| | |||
Sbjct: 23018121 tttatatagggtgatatatgtgattctcagttagtgaaactacttttcgaaacaaagaaa 23018062
Query: 320 atagacatagtgctacattttgctgcgcaaacacatgtagat 361
||||||||||| | |||||| || ||||||||||||||||
Sbjct: 23018061 atagacatagtaccacatttgtct-tgcaaacacatgtagat 23018021
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,183,925
Number of extensions: 248
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 12
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)