Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077194.1| heterogeneous nuclear ribonucleoprotein D-li... 476 e-134
Alignment gi|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [... 285 9e-77
Alignment gi|NP_001035612.1| heterogeneous nuclear ribonucleoprotein A/B ... 281 1e-75
Alignment gi|NP_001074996.1| RNA-binding protein Musashi homolog 1 [Bos t... 168 1e-41
Alignment gi|NP_001193585.1| RNA-binding protein Musashi homolog 2 [Bos t... 159 8e-39
Alignment gi|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [... 150 4e-36
Alignment gi|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus]. 149 5e-36
Alignment gi|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [... 149 6e-36
Alignment gi|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/... 149 8e-36
Alignment gi|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleop... 145 1e-34
>ref|NP_001077194.1| heterogeneous nuclear ribonucleoprotein D-like [Bos taurus].
Length = 420
Score = 476 bits (1226), Expect = e-134
Identities = 248/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS D+ AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRSARQHLPADHSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [Bos taurus].
Length = 306
Score = 285 bits (728), Expect = 9e-77
Identities = 134/201 (66%), Positives = 164/201 (81%), Gaps = 19/201 (9%)
Frame = +1
Query: 187 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 309
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 310 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 489
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 490 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 669
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 670 RYHQIGSGKCEIKVAQPKEVY 732
+YH +G KCEIKVA KE Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY 263
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>ref|NP_001035612.1| heterogeneous nuclear ribonucleoprotein A/B [Bos taurus].
Length = 285
Score = 281 bits (718), Expect = 1e-75
Identities = 131/182 (71%), Positives = 160/182 (87%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKDA SV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 115 FILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELPMD K+N+RRGF FIT+ +EEPVKK+LE ++H I KCEIKVAQPKE
Sbjct: 174 FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKE 233
Query: 727 VY 732
VY
Sbjct: 234 VY 235
>ref|NP_001074996.1| RNA-binding protein Musashi homolog 1 [Bos taurus].
Length = 362
Score = 168 bits (425), Expect = 1e-41
Identities = 86/172 (50%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Frame = +1
Query: 226 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 405
D KMFIGGLSW T+++ L EY +FGEV +C + DP+T RSRGFGFV F D A VDKV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 406 LELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIEN 573
L H+LD K IDPK R K KK+FVGGLS +T+ E +K+YF FG++++
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 574 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV 729
L D TN RGF F+T+ E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/83 (38%), Positives = 54/83 (65%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+F+GGLS +T+ +D+ +Y +FG+V D + D T R RGFGFV F+ V+KV E+
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 415 KEHKLDGKLIDPKRAKALKGKEP 483
H+++ K+++ K+A+ + P
Sbjct: 170 HFHEINNKMVECKKAQPKEVMSP 192
>ref|NP_001193585.1| RNA-binding protein Musashi homolog 2 [Bos taurus].
Length = 354
Score = 159 bits (401), Expect = 8e-39
Identities = 89/199 (44%), Positives = 113/199 (56%), Gaps = 34/199 (17%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
KMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFGFV F D ASVDKVL
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 415 KEHKLDGKLIDPK-----RAKA-----LKGKEP------------------------PKK 492
H+LD K IDPK RA+ +G P KK
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKGTFLTQGSNPRLLHWQADSLPLSHQDPRHAMVTRTKK 137
Query: 493 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESR 672
+FVGGLS +T E +K+YF FG++E+ L D TN RGF F+T+ +E+ V+K+ E
Sbjct: 138 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 197
Query: 673 YHQIGSGKCEIKVAQPKEV 729
+H+I + E K AQPKEV
Sbjct: 198 FHEINNKMVECKKAQPKEV 216
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/84 (39%), Positives = 55/84 (65%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+F+GGLS +T +D+ +Y +FG+V D + D T R RGFGFV F++ V+KV E+
Sbjct: 137 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 196
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP 486
H+++ K+++ K+A+ + PP
Sbjct: 197 HFHEINNKMVECKKAQPKEVMFPP 220
Score = 67.4 bits (163), Expect = 3e-11
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 481 PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 660
P K+F+GGLS TS + +++YF FGEI + D T RGF F+T+ D V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 661 LESRYHQIGSGKCEIKVAQPK 723
L +H++ S + KVA P+
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
>ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
Length = 320
Score = 150 bits (378), Expect = 4e-36
Identities = 68/183 (37%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Frame = +1
Query: 196 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 375
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 376 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 537
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 538 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 717
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 718 PKE 726
K+
Sbjct: 182 SKQ 184
>ref|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus].
Length = 380
Score = 149 bits (377), Expect = 5e-36
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 6/184 (3%)
Frame = +1
Query: 193 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 372
G++ + K + K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV
Sbjct: 22 GAEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Query: 373 LFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQ 534
+ VD + + HK+DG++++PKRA + + P KK+FVGG+ DT E
Sbjct: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 535 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 714
+++YF +G+IE IE+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 715 QPKE 726
K+
Sbjct: 202 LSKQ 205
>ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus].
Length = 380
Score = 149 bits (376), Expect = 6e-36
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Frame = +1
Query: 193 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 372
G + + K + K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV
Sbjct: 22 GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Query: 373 LFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQ 534
+ VD + + HK+DG++++PKRA + + P KK+FVGG+ DT E
Sbjct: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 535 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 714
+++YF +G+IE IE+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 715 QPKE 726
K+
Sbjct: 202 LSKQ 205
>ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus].
Length = 341
Score = 149 bits (375), Expect = 8e-36
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 6/170 (3%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+FIGGLS++T+++ L Y ++G++ DC + DP + RSRGFGFV F A VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 576
+ H +DG++++PKRA A + P KK+FVGG+ DT E +++YF +G+I+ I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 577 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
E+ D ++ ++RGF F+T+ D +PV K++ +YH I E++ A ++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 179
Score = 53.5 bits (127), Expect = 5e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 475 KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 654
KE +K+F+GGLS +T+EE ++ Y+ +G++ + + D + RGF F+T++ V
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Query: 655 KLLESRYHQIGSGKCEIKVAQPKE 726
+ +R H I E K A +E
Sbjct: 65 AAMAARPHSIDGRVVEPKRAVARE 88
>ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
taurus].
Length = 320
Score = 145 bits (365), Expect = 1e-34
Identities = 66/183 (36%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Frame = +1
Query: 196 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 375
SK + K + K+FIGGL ++T + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 376 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 537
+ VD + + HK+DG+ ++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 538 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 717
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + C+++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKAL 181
Query: 718 PKE 726
K+
Sbjct: 182 SKQ 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,722,799
Number of extensions: 906241
Number of successful extensions: 2976
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 2854
Number of HSP's successfully gapped: 110
Length of query: 479
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,174,046
Effective search space: 5286919158
Effective search space used: 5286919158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858477.1| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_858444.1| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_858404.1| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_858166.1| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_858041.1| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_534176.2| PREDICTED: similar to heterogeneous nuclear rib... 478 e-135
Alignment gi|XP_858366.1| PREDICTED: similar to heterogeneous nuclear rib... 474 e-134
Alignment gi|XP_858325.1| PREDICTED: similar to heterogeneous nuclear rib... 426 e-119
Alignment gi|XP_858286.1| PREDICTED: similar to heterogeneous nuclear rib... 426 e-119
Alignment gi|XP_858248.1| PREDICTED: similar to heterogeneous nuclear rib... 426 e-119
>ref|XP_858477.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 14 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_858444.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 13 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_858404.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 12 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_858166.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 6 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_858041.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 3 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_534176.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 1 [Canis familiaris].
Length = 420
Score = 478 bits (1231), Expect = e-135
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|XP_858366.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein D-like
isoform 11 [Canis familiaris].
Length = 413
Score = 474 bits (1220), Expect = e-134
Identities = 249/337 (73%), Positives = 250/337 (74%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY-------RQ 316
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 317 QQQQQKGGRGAAAGGRGGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 376
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 377 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 413
>ref|XP_858325.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
D-like isoform 10 [Canis familiaris].
Length = 363
Score = 426 bits (1094), Expect = e-119
Identities = 213/231 (92%), Positives = 214/231 (92%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 732
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 982 GQQSTYGKASRGGGNHQNNYQPY 1050
GQQSTYGKASRGGGNHQNNYQPY
Sbjct: 341 GQQSTYGKASRGGGNHQNNYQPY 363
>ref|XP_858286.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
D-like isoform 9 [Canis familiaris].
Length = 363
Score = 426 bits (1094), Expect = e-119
Identities = 213/231 (92%), Positives = 214/231 (92%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 732
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 982 GQQSTYGKASRGGGNHQNNYQPY 1050
GQQSTYGKASRGGGNHQNNYQPY
Sbjct: 341 GQQSTYGKASRGGGNHQNNYQPY 363
>ref|XP_858248.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
D-like isoform 8 [Canis familiaris].
Length = 363
Score = 426 bits (1094), Expect = e-119
Identities = 213/231 (92%), Positives = 214/231 (92%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS DN AAMEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADNSAAMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 732
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 982 GQQSTYGKASRGGGNHQNNYQPY 1050
GQQSTYGKASRGGGNHQNNYQPY
Sbjct: 341 GQQSTYGKASRGGGNHQNNYQPY 363
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,737,968
Number of extensions: 943403
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 301
Number of HSP's gapped: 3668
Number of HSP's successfully gapped: 449
Length of query: 479
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 372
Effective length of database: 15,307,552
Effective search space: 5694409344
Effective search space used: 5694409344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112740.1| heterogeneous nuclear ribonucleoprotein D-like ... 473 e-133
Alignment gi|NP_001193929.1| heterogeneous nuclear ribonucleoprotein D-li... 421 e-117
Alignment gi|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isof... 296 3e-80
Alignment gi|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 i... 296 3e-80
Alignment gi|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isof... 285 1e-76
Alignment gi|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isof... 285 1e-76
Alignment gi|NP_004490.2| heterogeneous nuclear ribonucleoprotein A/B iso... 281 1e-75
Alignment gi|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B iso... 281 1e-75
Alignment gi|NP_620412.1| RNA-binding protein Musashi homolog 2 isoform a... 179 4e-45
Alignment gi|NP_733839.1| RNA-binding protein Musashi homolog 2 isoform b... 169 8e-42
>ref|NP_112740.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Homo
sapiens].
Length = 420
Score = 473 bits (1218), Expect = e-133
Identities = 246/337 (72%), Positives = 248/337 (73%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS D+ MEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|NP_001193929.1| heterogeneous nuclear ribonucleoprotein D-like isoform b [Homo
sapiens].
Length = 363
Score = 421 bits (1081), Expect = e-117
Identities = 210/231 (90%), Positives = 212/231 (91%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS D+ MEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 732
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 982 GQQSTYGKASRGGGNHQNNYQPY 1050
GQQSTYGKASRGGGNHQNNYQPY
Sbjct: 341 GQQSTYGKASRGGGNHQNNYQPY 363
>ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo
sapiens].
Length = 336
Score = 296 bits (758), Expect = 3e-80
Identities = 134/182 (73%), Positives = 164/182 (90%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 727 VY 732
Y
Sbjct: 243 QY 244
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo
sapiens].
Length = 287
Score = 296 bits (758), Expect = 3e-80
Identities = 134/182 (73%), Positives = 164/182 (90%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 727 VY 732
Y
Sbjct: 243 QY 244
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>ref|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo
sapiens].
Length = 355
Score = 285 bits (728), Expect = 1e-76
Identities = 134/201 (66%), Positives = 164/201 (81%), Gaps = 19/201 (9%)
Frame = +1
Query: 187 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 309
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 310 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 489
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 490 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 669
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 670 RYHQIGSGKCEIKVAQPKEVY 732
+YH +G KCEIKVA KE Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY 263
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>ref|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo
sapiens].
Length = 306
Score = 285 bits (728), Expect = 1e-76
Identities = 134/201 (66%), Positives = 164/201 (81%), Gaps = 19/201 (9%)
Frame = +1
Query: 187 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 309
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 310 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 489
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 490 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 669
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 670 RYHQIGSGKCEIKVAQPKEVY 732
+YH +G KCEIKVA KE Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY 263
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>ref|NP_004490.2| heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo
sapiens].
Length = 285
Score = 281 bits (719), Expect = 1e-75
Identities = 131/182 (71%), Positives = 160/182 (87%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
Query: 727 VY 732
VY
Sbjct: 234 VY 235
>ref|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo
sapiens].
Length = 332
Score = 281 bits (719), Expect = 1e-75
Identities = 131/182 (71%), Positives = 160/182 (87%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
Query: 727 VY 732
VY
Sbjct: 234 VY 235
>ref|NP_620412.1| RNA-binding protein Musashi homolog 2 isoform a [Homo sapiens].
Length = 328
Score = 179 bits (455), Expect = 4e-45
Identities = 92/185 (49%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
++G+ +A+ +Q D GKMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFG
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQ 534
FV F D ASVDKVL H+LD K IDPK R K KK+FVGGLS +T E
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 535 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 714
+K+YF FG++E+ L D TN RGF F+T+ +E+ V+K+ E +H+I + E K A
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 715 QPKEV 729
QPKEV
Sbjct: 186 QPKEV 190
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/84 (39%), Positives = 55/84 (65%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+F+GGLS +T +D+ +Y +FG+V D + D T R RGFGFV F++ V+KV E+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP 486
H+++ K+++ K+A+ + PP
Sbjct: 171 HFHEINNKMVECKKAQPKEVMFPP 194
>ref|NP_733839.1| RNA-binding protein Musashi homolog 2 isoform b [Homo sapiens].
Length = 251
Score = 169 bits (427), Expect = 8e-42
Identities = 87/169 (51%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
KMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFGFV F D ASVDKVL
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 415 KEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 582
H+LD K IDPK R K KK+FVGGLS +T E +K+YF FG++E+ L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 583 PMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV 729
D TN RGF F+T+ +E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV 186
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/84 (39%), Positives = 55/84 (65%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+F+GGLS +T +D+ +Y +FG+V D + D T R RGFGFV F++ V+KV E+
Sbjct: 107 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 166
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP 486
H+++ K+++ K+A+ + PP
Sbjct: 167 HFHEINNKMVECKKAQPKEVMFPP 190
Score = 67.4 bits (163), Expect = 3e-11
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 481 PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 660
P K+F+GGLS TS + +++YF FGEI + D T RGF F+T+ D V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 661 LESRYHQIGSGKCEIKVAQPK 723
L +H++ S + KVA P+
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,875,293
Number of extensions: 926692
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 2961
Number of HSP's successfully gapped: 139
Length of query: 479
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,802,980
Effective search space: 5521511540
Effective search space used: 5521511540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057899.2| heterogeneous nuclear ribonucleoprotein D-like ... 474 e-134
Alignment gi|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 i... 297 1e-80
Alignment gi|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 i... 297 1e-80
Alignment gi|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 i... 286 4e-77
Alignment gi|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isof... 286 4e-77
Alignment gi|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B iso... 276 3e-74
Alignment gi|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B ... 276 3e-74
Alignment gi|XP_003085337.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical... 243 4e-64
Alignment gi|XP_003086896.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical... 243 4e-64
Alignment gi|NP_083246.1| RNA binding motif 31, Y-linked [Mus musculus]. 242 6e-64
>ref|NP_057899.2| heterogeneous nuclear ribonucleoprotein D-like [Mus musculus].
Length = 420
Score = 474 bits (1221), Expect = e-134
Identities = 247/337 (73%), Positives = 248/337 (73%)
Frame = +1
Query: 40 ELFRRHFKSSSIQRSXXXXXXXXXXXXXXXXDNPAAMEDMNEYSNIEEFAEGSKINASKN 219
+LFRRHFKSSSIQRS D A MEDMNEYSNIEEFAEGSKINASKN
Sbjct: 84 DLFRRHFKSSSIQRSAAAAAGTRTARQHPLADGSATMEDMNEYSNIEEFAEGSKINASKN 143
Query: 220 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 399
QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 400 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 579
KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 263
Query: 580 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXX 759
LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 264 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
Query: 760 XXXXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXX 939
NW SAYGGDQ
Sbjct: 324 GRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN 383
Query: 940 XXXXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 384 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>ref|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus
musculus].
Length = 287
Score = 297 bits (761), Expect = 1e-80
Identities = 135/182 (74%), Positives = 164/182 (90%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 727 VY 732
Y
Sbjct: 243 QY 244
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>ref|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Mus
musculus].
Length = 336
Score = 297 bits (761), Expect = 1e-80
Identities = 135/182 (74%), Positives = 164/182 (90%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 727 VY 732
Y
Sbjct: 243 QY 244
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>ref|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Mus
musculus].
Length = 355
Score = 286 bits (731), Expect = 4e-77
Identities = 135/201 (67%), Positives = 164/201 (81%), Gaps = 19/201 (9%)
Frame = +1
Query: 187 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 309
AEG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 AEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 310 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 489
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 490 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 669
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 670 RYHQIGSGKCEIKVAQPKEVY 732
+YH +G KCEIKVA KE Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY 263
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>ref|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Mus
musculus].
Length = 306
Score = 286 bits (731), Expect = 4e-77
Identities = 135/201 (67%), Positives = 164/201 (81%), Gaps = 19/201 (9%)
Frame = +1
Query: 187 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 309
AEG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 AEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 310 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 489
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 490 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 669
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 670 RYHQIGSGKCEIKVAQPKEVY 732
+YH +G KCEIKVA KE Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY 263
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 429
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>ref|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B isoform 2 [Mus
musculus].
Length = 285
Score = 276 bits (706), Expect = 3e-74
Identities = 127/182 (69%), Positives = 160/182 (87%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 60 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 119
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKD++SV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 120 FILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 178
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELP+D K N+RRGF FIT+ +E+PVKK+LE ++H + KCEIKVAQPKE
Sbjct: 179 FGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
Query: 727 VY 732
VY
Sbjct: 239 VY 240
>ref|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B isoform 1 [Mus
musculus].
Length = 332
Score = 276 bits (706), Expect = 3e-74
Identities = 127/182 (69%), Positives = 160/182 (87%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 60 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 119
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKD++SV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 120 FILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 178
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELP+D K N+RRGF FIT+ +E+PVKK+LE ++H + KCEIKVAQPKE
Sbjct: 179 FGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
Query: 727 VY 732
VY
Sbjct: 239 VY 240
>ref|XP_003085337.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC237030 [Mus
musculus].
Length = 537
Score = 243 bits (619), Expect = 4e-64
Identities = 118/190 (62%), Positives = 151/190 (79%)
Frame = +1
Query: 157 MNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 336
+ +Y+ +F EG KI+A+KNQQD KMFIGGLS + +K+ + EYLS+FGE++D IK D
Sbjct: 8 VKKYNERNQFREGFKIDATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFGEIIDFIIKID 67
Query: 337 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 516
P TG SRGFGFVLFKD+A+V+KVL +KEHK+DGK I+ KRAKAL+ + P KKVFVGGL+P
Sbjct: 68 PNTGLSRGFGFVLFKDSATVEKVLRVKEHKVDGKKIEVKRAKALESQFPIKKVFVGGLNP 127
Query: 517 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 696
SEE+I+ YFG FG+IE IELP+ + T ERR F FI Y DE PV+K+LE+RYH IGS +
Sbjct: 128 RMSEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYKDENPVRKVLETRYHFIGSSR 187
Query: 697 CEIKVAQPKE 726
CE+K+A PKE
Sbjct: 188 CEVKIAYPKE 197
Score = 64.7 bits (156), Expect = 2e-10
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = +1
Query: 406 LELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP 585
L +K++ + + + A K ++ K+F+GGLS + +++ + EY FGEI + +
Sbjct: 6 LAVKKYNERNQFREGFKIDATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFGEIIDFIIK 65
Query: 586 MDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
+D T RGF F+ + D V+K+L + H++ K E+K A+ E
Sbjct: 66 IDPNTGLSRGFGFVLFKDSATVEKVLRVKEHKVDGKKIEVKRAKALE 112
>ref|XP_003086896.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC237030 [Mus
musculus].
Length = 537
Score = 243 bits (619), Expect = 4e-64
Identities = 118/190 (62%), Positives = 151/190 (79%)
Frame = +1
Query: 157 MNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 336
+ +Y+ +F EG KI+A+KNQQD KMFIGGLS + +K+ + EYLS+FGE++D IK D
Sbjct: 8 VKKYNERNQFREGFKIDATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFGEIIDFIIKID 67
Query: 337 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 516
P TG SRGFGFVLFKD+A+V+KVL +KEHK+DGK I+ KRAKAL+ + P KKVFVGGL+P
Sbjct: 68 PNTGLSRGFGFVLFKDSATVEKVLRVKEHKVDGKKIEVKRAKALESQFPIKKVFVGGLNP 127
Query: 517 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 696
SEE+I+ YFG FG+IE IELP+ + T ERR F FI Y DE PV+K+LE+RYH IGS +
Sbjct: 128 RMSEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYKDENPVRKVLETRYHFIGSSR 187
Query: 697 CEIKVAQPKE 726
CE+K+A PKE
Sbjct: 188 CEVKIAYPKE 197
Score = 64.7 bits (156), Expect = 2e-10
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = +1
Query: 406 LELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP 585
L +K++ + + + A K ++ K+F+GGLS + +++ + EY FGEI + +
Sbjct: 6 LAVKKYNERNQFREGFKIDATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFGEIIDFIIK 65
Query: 586 MDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
+D T RGF F+ + D V+K+L + H++ K E+K A+ E
Sbjct: 66 IDPNTGLSRGFGFVLFKDSATVEKVLRVKEHKVDGKKIEVKRAKALE 112
>ref|NP_083246.1| RNA binding motif 31, Y-linked [Mus musculus].
Length = 565
Score = 242 bits (617), Expect = 6e-64
Identities = 122/194 (62%), Positives = 154/194 (79%)
Frame = +1
Query: 145 AMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCT 324
A+E NE E+F EG KI+A+KNQQD KMFIGGLS + SK+ L EYLS+FGE++D
Sbjct: 7 AVEKDNE---TEQFREGFKIDATKNQQDASKMFIGGLSQEMSKQVLLEYLSKFGEIIDFI 63
Query: 325 IKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 504
IKTDP TG SRGFGFVLFKD+A+V+KVL++K+HK+DGK I+ KRAKAL+ + P KK+FVG
Sbjct: 64 IKTDPNTGLSRGFGFVLFKDSATVEKVLQVKDHKVDGKKIEFKRAKALESQFPNKKIFVG 123
Query: 505 GLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQI 684
GL+P SEE+I+ YFG FG+IE IELP+ + T ERR F FI Y DE V+K+LE+RYH I
Sbjct: 124 GLNPRLSEEKIRAYFGTFGQIEAIELPLCSDTRERRAFGFIKYMDENSVRKVLENRYHFI 183
Query: 685 GSGKCEIKVAQPKE 726
GS +CE+K+A PKE
Sbjct: 184 GSSRCEVKMAYPKE 197
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,693,079
Number of extensions: 791726
Number of successful extensions: 2783
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 2628
Number of HSP's successfully gapped: 163
Length of query: 479
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 374
Effective length of database: 12,463,779
Effective search space: 4661453346
Effective search space used: 4661453346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106165.1| heterogeneous nuclear ribonucleoprotein A/B ... 282 3e-76
Alignment gi|XP_003129409.2| PREDICTED: heterogeneous nuclear ribonucleop... 278 7e-75
Alignment gi|XP_003135272.1| PREDICTED: hypothetical protein LOC100511612... 258 8e-69
Alignment gi|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [... 150 2e-36
Alignment gi|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleop... 149 4e-36
Alignment gi|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleop... 149 4e-36
Alignment gi|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleop... 149 4e-36
Alignment gi|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleop... 149 5e-36
Alignment gi|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleop... 149 5e-36
Alignment gi|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleop... 147 1e-35
>ref|NP_001106165.1| heterogeneous nuclear ribonucleoprotein A/B [Sus scrofa].
Length = 302
Score = 282 bits (722), Expect = 3e-76
Identities = 132/182 (72%), Positives = 161/182 (88%)
Frame = +1
Query: 187 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 366
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 71 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 130
Query: 367 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 546
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 131 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 189
Query: 547 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
FG FGEIE IELPMD K+N+RRGF FIT+ +EEPVKK+LE ++H I KCEIKVAQPKE
Sbjct: 190 FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKE 249
Query: 727 VY 732
VY
Sbjct: 250 VY 251
>ref|XP_003129409.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like, partial
[Sus scrofa].
Length = 215
Score = 278 bits (710), Expect = 7e-75
Identities = 145/215 (67%), Positives = 145/215 (67%)
Frame = +1
Query: 406 LELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP 585
LELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP
Sbjct: 1 LELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP 60
Query: 586 MDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYXXXXXXXXXXX 765
MDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY
Sbjct: 61 MDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGR 120
Query: 766 XXXXXXXXXXXXXXXXXXXNWXXXXXXXXXXXXXXXXSAYGGDQXXXXXXXXXXXXXXXX 945
NW SAYGGDQ
Sbjct: 121 GAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYG 180
Query: 946 XXXXXXXXADYSGQQSTYGKASRGGGNHQNNYQPY 1050
ADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 181 NYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 215
Score = 62.4 bits (150), Expect = 6e-10
Identities = 34/115 (29%), Positives = 60/115 (52%)
Frame = +1
Query: 154 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 333
++ E+ + + + A K ++ K+F+GGLS DTS++ + EY FGE+ + +
Sbjct: 2 ELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 61
Query: 334 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVF 498
D T RGF F+ + D V K+LE + H++ + K A+ PK+V+
Sbjct: 62 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ-------PKEVY 109
>ref|XP_003135272.1| PREDICTED: hypothetical protein LOC100511612 [Sus scrofa].
Length = 399
Score = 258 bits (658), Expect = 8e-69
Identities = 126/189 (66%), Positives = 156/189 (82%)
Frame = +1
Query: 157 MNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 336
MN ++F +G I ASKNQ D KMFIGG+S + SK+ L EYL++FGE++D IKT
Sbjct: 8 MNRVDEPQQFPQGFLIKASKNQYDASKMFIGGISRNISKQALLEYLTQFGEILDFIIKTY 67
Query: 337 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 516
P TG SRGFGFVLFKD+ASV+KVL+++EHK+DGK+ID KRAKA++ K PP+KVFVGGL+P
Sbjct: 68 PDTGLSRGFGFVLFKDSASVEKVLQVEEHKVDGKMIDLKRAKAMEVKFPPRKVFVGGLNP 127
Query: 517 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 696
SEE+I+EYFGAFG IENIELP+ + NERR FCFITYTDE+PV+KLLE+RYH IGSG+
Sbjct: 128 RMSEEKIREYFGAFGMIENIELPVCPRMNERRAFCFITYTDEKPVRKLLETRYHLIGSGR 187
Query: 697 CEIKVAQPK 723
CEIK+A PK
Sbjct: 188 CEIKIALPK 196
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Frame = +1
Query: 460 KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 639
KA K + K+F+GG+S + S++ + EY FGEI + + T RGF F+ + D
Sbjct: 24 KASKNQYDASKMFIGGISRNISKQALLEYLTQFGEILDFIIKTYPDTGLSRGFGFVLFKD 83
Query: 640 EEPVKKLLESRYHQIGSGKCEIKVAQPKEV 729
V+K+L+ H++ ++K A+ EV
Sbjct: 84 SASVEKVLQVEEHKVDGKMIDLKRAKAMEV 113
>ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa].
Length = 320
Score = 150 bits (378), Expect = 2e-36
Identities = 68/183 (37%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Frame = +1
Query: 196 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 375
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 376 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 537
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 538 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 717
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 718 PKE 726
K+
Sbjct: 182 SKQ 184
>ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 353
Score = 149 bits (376), Expect = 4e-36
Identities = 69/191 (36%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Frame = +1
Query: 175 IEEFAEGSKINASKNQQDD-GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 351
+E+ E + K +++ K+FIGGLS++T+++ L Y ++G++ DC + DP + R
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 352 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLS 513
SRGFGFV F A VD + + H +DG++++PKRA A + P KK+FVGG+
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 120
Query: 514 PDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 693
DT E +++YF +G+I+ IE+ D ++ ++RGF F+T+ D +PV K++ +YH I
Sbjct: 121 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 180
Query: 694 KCEIKVAQPKE 726
E++ A ++
Sbjct: 181 NAEVRKALSRQ 191
>ref|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Sus scrofa].
Length = 353
Score = 149 bits (376), Expect = 4e-36
Identities = 69/191 (36%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Frame = +1
Query: 175 IEEFAEGSKINASKNQQDD-GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 351
+E+ E + K +++ K+FIGGLS++T+++ L Y ++G++ DC + DP + R
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 352 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLS 513
SRGFGFV F A VD + + H +DG++++PKRA A + P KK+FVGG+
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 120
Query: 514 PDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 693
DT E +++YF +G+I+ IE+ D ++ ++RGF F+T+ D +PV K++ +YH I
Sbjct: 121 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 180
Query: 694 KCEIKVAQPKE 726
E++ A ++
Sbjct: 181 NAEVRKALSRQ 191
>ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa].
Length = 379
Score = 149 bits (376), Expect = 4e-36
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Frame = +1
Query: 193 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 372
G + + K + K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV
Sbjct: 22 GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Query: 373 LFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQ 534
+ VD + + HK+DG++++PKRA + + P KK+FVGG+ DT E
Sbjct: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 535 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 714
+++YF +G+IE IE+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 715 QPKE 726
K+
Sbjct: 202 LSKQ 205
>ref|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Sus scrofa].
Length = 341
Score = 149 bits (375), Expect = 5e-36
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 6/170 (3%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+FIGGLS++T+++ L Y ++G++ DC + DP + RSRGFGFV F A VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 576
+ H +DG++++PKRA A + P KK+FVGG+ DT E +++YF +G+I+ I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 577 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
E+ D ++ ++RGF F+T+ D +PV K++ +YH I E++ A ++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 179
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 475 KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 654
KE +K+F+GGLS +T+EE ++ Y+ +G++ + + D + RGF F+T++ V
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Query: 655 KLLESRYHQIGSGKCEIKVAQPKE 726
+ +R H I E K A +E
Sbjct: 65 AAMAARPHSIDGRVVEPKRAVARE 88
>ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa].
Length = 357
Score = 149 bits (375), Expect = 5e-36
Identities = 68/170 (40%), Positives = 107/170 (62%), Gaps = 6/170 (3%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV + VD +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 576
+ HK+DG++++PKRA + + P KK+FVGG+ DT E +++YF +G+IE I
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 133
Query: 577 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
E+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A K+
Sbjct: 134 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/94 (31%), Positives = 53/94 (56%)
Frame = +1
Query: 445 DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCF 624
DPK + L+ K+F+GGLS +T+++ ++E+F +G + + + D +T RGF F
Sbjct: 5 DPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 58
Query: 625 ITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
+TY+ E V + +R H++ E K A +E
Sbjct: 59 VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 92
>ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 447
Score = 147 bits (371), Expect = 1e-35
Identities = 65/170 (38%), Positives = 108/170 (63%), Gaps = 6/170 (3%)
Frame = +1
Query: 235 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 414
K+FIGGLS++T+++ L Y ++G++ DC + DP + RSRGFGFV F A VD +
Sbjct: 116 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 175
Query: 415 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 576
+ H +DG++++PKRA A + P KK+FVGG+ DT E +++YF +G+++ I
Sbjct: 176 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTI 235
Query: 577 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 726
E+ D ++ ++RGF F T+ D +PV K++ +YH I E++ A ++
Sbjct: 236 EIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 285
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 475 KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 654
KE +K+F+GGLS +T+EE ++ Y+ +G++ + + D + RGF F+T++ V
Sbjct: 111 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 170
Query: 655 KLLESRYHQIGSGKCEIKVAQPKE 726
+ +R H I E K A +E
Sbjct: 171 AAMAARPHSIDGRVVEPKRAVARE 194
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,800,364
Number of extensions: 577310
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 1878
Number of HSP's successfully gapped: 101
Length of query: 479
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 376
Effective length of database: 8,779,541
Effective search space: 3301107416
Effective search space used: 3301107416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007545
(1437 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 862 0.0
Sscrofa_Chr16 486 e-134
Sscrofa_Chr15 396 e-107
gb|JH118625.1| Sus scrofa unplaced genomic scaffold ChrUScaf1348 198 6e-48
Sscrofa_Chr02 141 1e-30
>Sscrofa_Chr08
|| Length = 148491826
Score = 862 bits (435), Expect = 0.0
Identities = 449/456 (98%)
Strand = Plus / Plus
Query: 982 ggccaacagagcacttatggcaaggcatctcgagggggtggcaatcaccaaaataattac 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175649 ggccaacagagcacttatggcaaggcatctcgagggggtggcaatcaccaaaataattac 145175708
Query: 1042 cagccatactaaagggggacattggagaaaacaggtgtgtataagcgttcgagaaaccag 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175709 cagccatactaaagggggacattggagaaaacaggtgtgtataagcgttcgagaaaccag 145175768
Query: 1102 tggaaatgtctaatttaatttaaagatcaatagacaaatgaaaaataagtaaaaacaaaa 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175769 tggaaatgtctaatttaatttaaagatcaatagacaaatgaaaaataagtaaaaacaaaa 145175828
Query: 1162 tatcatgtagtctgtttttactcaattgtttactttttaacttgcattatgagcctgttt 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175829 tatcatgtagtctgtttttactcaattgtttactttttaacttgcattatgagcctgttt 145175888
Query: 1222 tgcctaaagtgtctatagatctttaacttttaaaaagttttatctcacnnnnnnnagtat 1281
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 145175889 tgcctaaagtgtctatagatctttaacttttaaaaagttttatctcactttttttagtat 145175948
Query: 1282 tacagaaaaacttaagagtttttctgtttgctttgtgtaccaggtggtctagaggagtaa 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175949 tacagaaaaacttaagagtttttctgtttgctttgtgtaccaggtggtctagaggagtaa 145176008
Query: 1342 ttaaacttttttagaactattaacaggtaaagtactgaaatgggtacaacttaaggaaaa 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145176009 ttaaacttttttagaactattaacaggtaaagtactgaaatgggtacaacttaaggaaaa 145176068
Query: 1402 caagaatgttgtcttctaactctgacattatacctt 1437
||||||||||||||||||||||||||||||||||||
Sbjct: 145176069 caagaatgttgtcttctaactctgacattatacctt 145176104
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 810 aggtcagggccaaaactggaaccaaggatttaataactattatgatcaaggatatggaaa 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145174269 aggtcagggccaaaactggaaccaaggatttaataactattatgatcaaggatatggaaa 145174328
Query: 870 ttacaatagtgcctatggtggtgatcaaaactatagtggctatggcggctatgattatac 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145174329 ttacaatagtgcctatggtggtgatcaaaactatagtggctatggcggctatgattatac 145174388
Query: 930 tgggtataactatgggaactatggatatggacagggatatgcagactacagtgg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145174389 tgggtataactatgggaactatggatatggacagggatatgcagactacagtgg 145174442
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 810 aggtcagggccaaaactggaaccaaggatttaataactattatgatcaaggatatggaaa 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175146 aggtcagggccaaaactggaaccaaggatttaataactattatgatcaaggatatggaaa 145175205
Query: 870 ttacaatagtgcctatggtggtgatcaaaactatagtggctatggcggctatgattatac 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175206 ttacaatagtgcctatggtggtgatcaaaactatagtggctatggcggctatgattatac 145175265
Query: 930 tgggtataactatgggaactatggatatggacagggatatgcagactacagtgg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145175266 tgggtataactatgggaactatggatatggacagggatatgcagactacagtgg 145175319
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 401 aggttttggaactgaaagaacacaaactggatggcaaattgatagaccctaaaagggcca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145172723 aggttttggaactgaaagaacacaaactggatggcaaattgatagaccctaaaagggcca 145172782
Query: 461 aagctttaaaagggaaggaacccccaaaaaaggtttttgtgggcggattgagcccagata 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145172783 aagctttaaaagggaaggaacccccaaaaaaggtttttgtgggcggattgagcccagata 145172842
Query: 521 cttcagaagaacaaatcaaagaatactttggagcctttggagag 564
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145172843 cttcagaagaacaaatcaaagaatactttggagcctttggagag 145172886
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 563 agattgaaaatattgaacttcccatggatacaaaaacaaatgaaagaagaggtttttgtt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145173366 agattgaaaatattgaacttcccatggatacaaaaacaaatgaaagaagaggtttttgtt 145173425
Query: 623 ttattacgtacacagacgaagagccagtaaagaaattgttagaaagccgatatcatcaaa 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145173426 ttattacgtacacagacgaagagccagtaaagaaattgttagaaagccgatatcatcaaa 145173485
Query: 683 ttggttctgggaag 696
||||||||||||||
Sbjct: 145173486 ttggttctgggaag 145173499
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 695 agtgtgaaatcaaagttgcacaacccaaagaggtgtataggcagcaacagcaacaacaga 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145173628 agtgtgaaatcaaagttgcacaacccaaagaggtgtataggcagcaacagcaacaacaga 145173687
Query: 755 aaggaggaagaggtgctgcagctggcggacgaggtggtactaggggtcgtggacgaggt 813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145173688 aaggaggaagaggtgctgcagctggcggacgaggtggtactaggggtcgtggacgaggt 145173746
Score = 198 bits (100), Expect = 6e-48
Identities = 116/120 (96%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 957 tggacagggatatgcagactacagtggccaacagagcacttatggcaaggcatctcgagg 1016
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 51947158 tggacagggatatgcagactacagtggccaatagagcacttatggcaaggcatctcgagg 51947217
Query: 1017 gggtggcaatcaccaaaataattaccagccatactaaagggggacattggagaaaacagg 1076
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 51947218 gggtggcaatcaccaaaataatcaccagccataataaa-ggggacattggagaaaacagg 51947276
Score = 198 bits (100), Expect = 6e-48
Identities = 116/120 (96%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 957 tggacagggatatgcagactacagtggccaacagagcacttatggcaaggcatctcgagg 1016
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 52249341 tggacagggatatgcagactacagtggccaatagagcacttatggcaaggcatctcgagg 52249282
Query: 1017 gggtggcaatcaccaaaataattaccagccatactaaagggggacattggagaaaacagg 1076
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 52249281 gggtggcaatcaccaaaataatcaccagccataataaa-ggggacattggagaaaacagg 52249223
>Sscrofa_Chr16
|| Length = 86898991
Score = 486 bits (245), Expect = e-134
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 564 gattgaaaatattgaacttcccatggatacaaaaacaaatgaaagaagaggtttttgttt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26854124 gattgaaaatattgaacttcccatggatacaaaaacaaatgaaagaagaggtttttgttt 26854183
Query: 624 tattacgtacacagacgaagagccagtaaagaaattgttagaaagccgatatcatcaaat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26854184 tattacgtacacagacgaagagccagtaaagaaattgttagaaagccgatatcatcaaat 26854243
Query: 684 tggttctgggaagtgtgaaatcaaagttgcacaacccaaagaggtgtataggcagcaaca 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26854244 tggttctgggaagtgtgaaatcaaagttgcacaacccaaagaggtgtataggcagcaaca 26854303
Query: 744 gcaacaacagaaaggaggaagaggtgctgcagctggcggacgaggtggtactaggggtcg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26854304 gcaacaacagaaaggaggaagaggtgctgcagctggcggacgaggtggtactaggggtcg 26854363
Query: 804 tggacgagg 812
|||| ||||
Sbjct: 26854364 tggaagagg 26854372
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 982 ggccaacagagcacttatggcaaggcatctcgagggggtggcaatcaccaaaataattac 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26854371 ggccaacagagcacttatggcaaggcatctcgagggggtggcaatcaccaaaataattac 26854430
Query: 1042 cagccatactaaagggggacattggagaaaacag 1075
||||||||||||||||||||||||||||||||||
Sbjct: 26854431 cagccatactaaagggggacattggagaaaacag 26854464
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 149 tggaggacatgaacgagtacagcaacatagaggagttcgcagaggggtccaagatcaacg 208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 26854040 tggaggacatgaacgagtacagcaacatagaggaattcgcagaggggtccaagatcaacg 26854099
Query: 209 cgagcaaaaatcagcaggatgacgg 233
|||||||||||||||||||||||||
Sbjct: 26854100 cgagcaaaaatcagcaggatgacgg 26854124
>Sscrofa_Chr15
|| Length = 157681621
Score = 396 bits (200), Expect = e-107
Identities = 667/822 (81%), Gaps = 48/822 (5%)
Strand = Plus / Plus
Query: 248 gaggcttgagctgggatacaagcaagaaagatctgactgaatatttgtctcgatttgggg 307
|||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||
Sbjct: 116461488 gaggcttgagctaggatacaagcaaga----tctggatgaatatttgtcttgatttggga 116461543
Query: 308 aagtcgtagactgcacaattaaaacagatccagtcactggaagatcaagaggatttggat 367
||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 116461544 aagctgtagactgcataattaaaacagatccactcactggaagatcaagatgatttggat 116461603
Query: 368 ttgtgcttttcaaagatgctgctagtgttgataaggttttggaactgaaagaacacaaac 427
||||||||||||||||| |||||| || || ||||||||||||||| ||| |
Sbjct: 116461604 ttgtgcttttcaaagatcctgctactgctgctaaggttttggaacttaaa---------c 116461654
Query: 428 tggatggcaaattgatagaccctaaaagggccaaagcttta-------aaagggaaggaa 480
|||||||||||| || ||| | ||||||||||||| ||||| ||||||||| ||
Sbjct: 116461655 tggatggcaaatagacagaacttaaaagggccaaaactttatttttttaaagggaagaaa 116461714
Query: 481 cccccaaaaaaggtttttgtgggcggattgagcccagatactt----cagaagaacaaat 536
|||| ||||| ||||||||| | ||| ||||||||||||||| | ||||||||||
Sbjct: 116461715 cccctaaaaa-ggtttttgttgatggactgagcccagatacttatttctcaagaacaaat 116461773
Query: 537 caaagaatactttggagcctttggagagattgaaaatattgaacttcccatggatacaaa 596
|| |||||||||| ||||||| ||||||||||||| |||||| ||||||||
Sbjct: 116461774 ttct---tattttggagcctacggagagactgaaaatattgaatatcccatagatacaaa 116461830
Query: 597 aacaaatgaaagaagaggtttttgttttattacgtacacagacgaagagccagtaaagaa 656
|||||| | | ||||||||| || ||||| |||| |||||||||
Sbjct: 116461831 aacaaaagga--------------ttttattacatatacagataaagaaccagtaaag-- 116461874
Query: 657 attgttagaaagccgatatcatcaaattggttctgggaagtgtgaaatcaaagttgcaca 716
|||||||||||| || |||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 116461875 -ttgttagaaagcagacatcatcgaattggttctgcaaagtatgaaatcaaagttgcaca 116461933
Query: 717 acccaaagaggtgtataggcagcaacagcaacaacagaaaggaggaagaggtgctgcagc 776
||||||||| | |||||| | || |||||| ||| ||||||||||| |||||
Sbjct: 116461934 acccaaagacatatataggaggtaattacaacaatgtaaatgaggaagaggtactgcatt 116461993
Query: 777 tggcggacgaggtggtactaggggtcgtggacgaggtcagggccaaaactggaaccaagg 836
|| ||| |||||||||||||||| |||| ||||||||| | |||||||||| | |
Sbjct: 116461994 gggttgacaaggtggtactaggggttgtggctgaggtcaggactgaaactggaactagga 116462053
Query: 837 atttaat-aactattatgatcaaggatatggaaattacaatagtgcctatggtggtgatc 895
||| | || || |||| |||| | ||||||||||||||| |||||||||||||||||
Sbjct: 116462054 ccttagttaaatactatg--caagcacatggaaattacaatactgcctatggtggtgatc 116462111
Query: 896 aaaactatagtggctatggcggctatgattatactgggtataactatgggaactatggat 955
| |||||||||||||||||| | ||||| ||||||| |||||||||||||||||| | |
Sbjct: 116462112 agaactatagtggctatggcagttatgactatactgattataactatgggaactatagct 116462171
Query: 956 atggacagggatatgcagactacagtggccaacagagcacttatggcaaggcatctcgag 1015
||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||
Sbjct: 116462172 atggacagggatatgcagactacagtgttcaacagaacacctatggcaaggtatctcgag 116462231
Query: 1016 ggggtggcaatcaccaaaataattaccagccatactaaaggg 1057
|| || ||||||||||| ||||||||||||||||||||||
Sbjct: 116462232 aggatgtaaatcaccaaaacaattaccagccatactaaaggg 116462273
>gb|JH118625.1| Sus scrofa unplaced genomic scaffold ChrUScaf1348
Length = 56726
Score = 198 bits (100), Expect = 6e-48
Identities = 116/120 (96%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 957 tggacagggatatgcagactacagtggccaacagagcacttatggcaaggcatctcgagg 1016
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 52950 tggacagggatatgcagactacagtggccaatagagcacttatggcaaggcatctcgagg 52891
Query: 1017 gggtggcaatcaccaaaataattaccagccatactaaagggggacattggagaaaacagg 1076
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 52890 gggtggcaatcaccaaaataatcaccagccataataaa-ggggacattggagaaaacagg 52832
>Sscrofa_Chr02
|| Length = 162569375
Score = 141 bits (71), Expect = 1e-30
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 1001 gcaaggcatctcgagggggtggcaatcaccaaaataattaccagccatactaaaggggga 1060
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 83445469 gcaaggcatctcgagggggtggcaatcaccgaaataattaccagccatactaaaggggga 83445410
Query: 1061 cattggagaaaacag 1075
|||||||||||||||
Sbjct: 83445409 cattggagaaaacag 83445395
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,556,438
Number of extensions: 632
Number of successful extensions: 632
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 17
Length of query: 1437
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1416
Effective length of database: 2,808,413,156
Effective search space: 3976713028896
Effective search space used: 3976713028896
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)