Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030563.1| protein shisa-5 precursor [Bos taurus]. 199 3e-51
Alignment gi|XP_002702828.1| PREDICTED: protein shisa-5-like [Bos taurus]. 80 5e-15
>ref|NP_001030563.1| protein shisa-5 precursor [Bos taurus].
Length = 216
Score = 199 bits (507), Expect = 3e-51
Identities = 99/217 (45%), Positives = 123/217 (56%)
Frame = +3
Query: 168 GAHSEVCMVSTGRSLFPKFCSDFCCGTCNYQYCCSDVLEKFVWSKDECDVPEASVPASVE 347
GA SE+CM+S GR + P C DFCCG CN QYCCSDVL++ +W +++C PEAS+
Sbjct: 23 GAQSELCMISHGRKVDPWVCPDFCCGNCNDQYCCSDVLKQVMWIEEDCHAPEASILTD-- 80
Query: 348 PGEQLGSALRFRSSLDSDPMSGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPR 527
F S DSDP++ FGT +A+G+T+FV++VVT+I+C TCSCC LYKMCRRP+
Sbjct: 81 ---------DFDSGFDSDPVARFGTVIAIGVTLFVIAVVTVIVCCTCSCCCLYKMCRRPQ 131
Query: 528 PXXXXXXXXXXXHAXXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXX 707
P H TYQGYH
Sbjct: 132 PVVTTTMATTVTHT----PYLQPPSYPGPTYQGYH--------SVVPQPGMPTAPYPTQP 179
Query: 708 XXXXXXHETMAGGAAMPYPASQPPYNPAYVDPPKAAP 818
HETMAGGAA+PYPASQPPYNPAY++PPKA P
Sbjct: 180 TGPPAYHETMAGGAALPYPASQPPYNPAYMEPPKAVP 216
>ref|XP_002702828.1| PREDICTED: protein shisa-5-like [Bos taurus].
Length = 209
Score = 79.7 bits (195), Expect = 5e-15
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +3
Query: 168 GAHSEVCMVSTGRSLFPKFCSDFCCGTCNYQYCCSDVLEKFVWSKDECDVPEA 326
GA SE+CM+S GR + P C DFCCG CN QYCCSDVL++ +W +++C PEA
Sbjct: 23 GAQSELCMISHGRKVDPWVCPDFCCGNCNDQYCCSDVLKQVMWIEEDCHAPEA 75
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,444,472
Number of extensions: 1346643
Number of successful extensions: 5622
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5595
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 291
Effective length of database: 14,240,222
Effective search space: 4143904602
Effective search space used: 4143904602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis f... 172 7e-43
>ref|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis familiaris].
Length = 160
Score = 172 bits (435), Expect = 7e-43
Identities = 90/160 (56%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Frame = +3
Query: 342 VEPGEQLGSALRFRSSLDSDPMSGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRR 521
+E EQLGSALRF SSLDSDPMSGFGTTVA+GLTIFVL+VVT+I+CFTCSCC LYKMCRR
Sbjct: 1 MESLEQLGSALRFYSSLDSDPMSGFGTTVAIGLTIFVLAVVTLIVCFTCSCCCLYKMCRR 60
Query: 522 -PRPXXXXXXXXXXXHAXXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXX 698
PRP H TYQGYH
Sbjct: 61 PPRPVVTTTTATTVVHTPYPQPPSVPPGYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYP 120
Query: 699 XXXXXXXXXHETMAGGAAMPYPASQPPYNPAYVDPPKAAP 818
HET+AGGAAMPYPASQPPYNPAY+DPPKAAP
Sbjct: 121 AQPMGPPAYHETLAGGAAMPYPASQPPYNPAYMDPPKAAP 160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,981,751
Number of extensions: 1327801
Number of successful extensions: 5661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5644
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 290
Effective length of database: 15,374,224
Effective search space: 4458524960
Effective search space used: 4458524960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057563.3| protein shisa-5 precursor [Homo sapiens]. 258 1e-68
Alignment gi|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapien... 117 2e-26
Alignment gi|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapien... 117 2e-26
>ref|NP_057563.3| protein shisa-5 precursor [Homo sapiens].
Length = 240
Score = 258 bits (658), Expect = 1e-68
Identities = 130/217 (59%), Positives = 140/217 (64%)
Frame = +3
Query: 165 PGAHSEVCMVSTGRSLFPKFCSDFCCGTCNYQYCCSDVLEKFVWSKDECDVPEASVPASV 344
PGA EVCM S G SLFP+ C DFCCGTC+ QYCCSDVL+KFVWS++ C VPEASVPASV
Sbjct: 24 PGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDVLKKFVWSEERCAVPEASVPASV 83
Query: 345 EPGEQLGSALRFRSSLDSDPMSGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRP 524
EP EQLGSALRFR +DPMSGFG T+AVGLTIFVLSVVTIIICFTCSCC LYK CRRP
Sbjct: 84 EPVEQLGSALRFRPGY-NDPMSGFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRP 142
Query: 525 RPXXXXXXXXXXXHAXXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXX 704
RP HA +YQGYH
Sbjct: 143 RPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQ 202
Query: 705 XXXXXXXHETMAGGAAMPYPASQPPYNPAYVDPPKAA 815
HET+AGGAA PYPASQPPYNPAY+D PKAA
Sbjct: 203 PMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAA 239
>ref|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapiens].
Length = 145
Score = 117 bits (294), Expect = 2e-26
Identities = 63/141 (44%), Positives = 70/141 (49%)
Frame = +3
Query: 426 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 605
VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP HA
Sbjct: 5 VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 64
Query: 606 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 785
+YQGY+ ET+AGGA PYP SQPPYN
Sbjct: 65 PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 124
Query: 786 PAYVDPPKAAP*AHLCISGCH 848
PAY+ PKAAP A +SGCH
Sbjct: 125 PAYIYAPKAAPGACPGLSGCH 145
>ref|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapiens].
Length = 154
Score = 117 bits (294), Expect = 2e-26
Identities = 63/141 (44%), Positives = 70/141 (49%)
Frame = +3
Query: 426 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 605
VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP HA
Sbjct: 14 VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 73
Query: 606 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 785
+YQGY+ ET+AGGA PYP SQPPYN
Sbjct: 74 PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 133
Query: 786 PAYVDPPKAAP*AHLCISGCH 848
PAY+ PKAAP A +SGCH
Sbjct: 134 PAYIYAPKAAPGACPGLSGCH 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,272,581
Number of extensions: 1323020
Number of successful extensions: 5645
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5604
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 290
Effective length of database: 14,835,944
Effective search space: 4302423760
Effective search space used: 4302423760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus]. 185 7e-47
Alignment gi|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus]. 89 5e-18
>ref|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus].
Length = 235
Score = 185 bits (469), Expect = 7e-47
Identities = 101/222 (45%), Positives = 117/222 (52%), Gaps = 4/222 (1%)
Frame = +3
Query: 165 PGAHSEVCMVSTGRSLFPKFCSDFCCGTCNYQYCCSDVLEKFVWSKDECDVPEA--SVPA 338
PGAH E+C + P FC DFCCG+C+ QYCCSDVL K W+++ C PE+ S PA
Sbjct: 22 PGAHGELCRPFGEDNSIPVFCPDFCCGSCSNQYCCSDVLRKIQWNEEMCPEPESRFSTPA 81
Query: 339 SVEPGEQLGSALRFRSSLDSDPMSGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCR 518
P E LGSAL+FRSS DSDPMSGFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC
Sbjct: 82 EETP-EHLGSALKFRSSFDSDPMSGFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCC 140
Query: 519 RPRPXXXXXXXXXXXHA--XXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXX 692
RP HA TYQGYH
Sbjct: 141 PQRPVVTNTTTTTVVHAPYPQPQPQPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPP 200
Query: 693 XXXXXXXXXXXHETMAGGAAMPYPASQPPYNPAYVDPPKAAP 818
HE++AG ASQPPYNP Y+D K P
Sbjct: 201 YLAQPTGPPPYHESLAG-------ASQPPYNPTYMDSLKTIP 235
>ref|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus].
Length = 132
Score = 89.4 bits (220), Expect = 5e-18
Identities = 53/138 (38%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +3
Query: 411 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHA--XXXXX 584
GFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC RP HA
Sbjct: 2 GFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCCPQRPVVTNTTTTTVVHAPYPQPQP 61
Query: 585 XXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYP 764
TYQGYH HE++AG
Sbjct: 62 QPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQPTGPPPYHESLAG------- 114
Query: 765 ASQPPYNPAYVDPPKAAP 818
ASQPPYNP Y+D K P
Sbjct: 115 ASQPPYNPTYMDSLKTIP 132
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,137,304
Number of extensions: 1118075
Number of successful extensions: 4965
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4932
Number of HSP's successfully gapped: 2
Length of query: 395
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 292
Effective length of database: 12,523,851
Effective search space: 3656964492
Effective search space used: 3656964492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa]. 154 1e-37
Alignment gi|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430... 153 2e-37
Alignment gi|XP_003130656.1| PREDICTED: protein shisa-4-like [Sus scrofa]. 51 1e-06
>ref|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa].
Length = 161
Score = 154 bits (388), Expect = 1e-37
Identities = 79/139 (56%), Positives = 80/139 (57%)
Frame = +3
Query: 402 PMSGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXX 581
P+ FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP HA
Sbjct: 23 PLETFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQ 82
Query: 582 XXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPY 761
TYQGYH HETMAGGAAMPY
Sbjct: 83 PPSVPPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPY 142
Query: 762 PASQPPYNPAYVDPPKAAP 818
PASQPPYNPAYVDPPKAAP
Sbjct: 143 PASQPPYNPAYVDPPKAAP 161
>ref|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430 [Sus scrofa].
Length = 137
Score = 153 bits (387), Expect = 2e-37
Identities = 79/136 (58%), Positives = 79/136 (58%)
Frame = +3
Query: 411 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXX 590
GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP HA
Sbjct: 2 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQPPS 61
Query: 591 XXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPAS 770
TYQGYH HETMAGGAAMPYPAS
Sbjct: 62 VPPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPYPAS 121
Query: 771 QPPYNPAYVDPPKAAP 818
QPPYNPAYVDPPKAAP
Sbjct: 122 QPPYNPAYVDPPKAAP 137
>ref|XP_003130656.1| PREDICTED: protein shisa-4-like [Sus scrofa].
Length = 197
Score = 51.2 bits (121), Expect = 1e-06
Identities = 32/94 (34%), Positives = 39/94 (41%)
Frame = +3
Query: 228 SDFCCGTCNYQYCCSDVLEKFVWSKDECDVPEASVPASVEPGEQLGSALRFRSSLDSDPM 407
S FCCGTC +YCC D P + Q L F P
Sbjct: 50 STFCCGTCYQRYCCRD-------------------PTLLITERQQKHCLAF------SPK 84
Query: 408 SGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYK 509
+ G +A + +FV V T I CF CSCCYLY+
Sbjct: 85 TIAG--IASAVILFVAVVATTICCFLCSCCYLYR 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,386,353
Number of extensions: 929639
Number of successful extensions: 3606
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3597
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,829,335
Effective search space: 2595824490
Effective search space used: 2595824490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007557
(1185 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 662 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 662 bits (334), Expect = 0.0
Identities = 420/446 (94%), Gaps = 2/446 (0%)
Strand = Plus / Plus
Query: 741 ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560573 ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 34560632
Query: 801 cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560633 cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 34560692
Query: 861 gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560693 gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 34560752
Query: 921 tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttccca-aattaatt 979
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 34560753 tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttcccagagttaatt 34560812
Query: 980 gggaacatagcttgttcccttcctgaactgaaattatgcttctgaaatctcaagcaaaac 1039
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 34560813 gggaccatagcttgttcccttcctgacttgaaattatgcttctgaaatctcaagcaaaac 34560872
Query: 1040 tggaaagaatggttctcctccaaaacgccccaggaagccaaatgggggttgtcacactag 1099
| ||||||||||||||| |||| | |||| ||| ||||||||||||||||||||||||
Sbjct: 34560873 t-gaaagaatggttctcttccagacagcccagggaggccaaatgggggttgtcacactag 34560931
Query: 1100 aaaagcacagctttttgtgggaacattgcaccccggttccaatttcggaagaatggcggg 1159
| |||||||||||||||||| ||| ||||||| |||||| |||| || ||||| ||
Sbjct: 34560932 gatagcacagctttttgtgggcacagtgcacccgtgttccagtttctgaggaatgctggc 34560991
Query: 1160 cactgcttaaggccatggcttgtccc 1185
||||||| ||||||||||||||||||
Sbjct: 34560992 cactgctcaaggccatggcttgtccc 34561017
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 529 cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560277 cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 34560336
Query: 589 gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560337 gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 34560396
Query: 649 cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560397 cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 34560456
Query: 709 tgggtccccccgcctaccacgaaacaatggctgg 742
||||||||||||||||||||||||||||||||||
Sbjct: 34560457 tgggtccccccgcctaccacgaaacaatggctgg 34560490
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 171 gcccacagtgaggtgtgtatggtttctactggacgcagcctcttccccaagttctgctct 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34444676 gcccacagtgaggtgtgtatggtttctactggacgcagcctcttccccaagttctgctct 34444617
Query: 231 gatttctgctgtggcacctgtaactaccagtactgctgctctgatgtgctggagaaattt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34444616 gatttctgctgtggcacctgtaactaccagtactgctgctctgatgtgctggagaaattt 34444557
Query: 291 gtgtggagcaaggatgagtgtgatgttccagaggccag 328
||||||||||||||||||||||||||||||||||||||
Sbjct: 34444556 gtgtggagcaaggatgagtgtgatgttccagaggccag 34444519
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 412 ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560004 ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 34560063
Query: 472 tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560064 tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 34560120
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 326 cagtgtccccgccagtgtggagccaggagagcagctgggctcagcactgaggttccgctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34433730 cagtgtccccgccagtgtggagccaggagagcagctgggctcagcactgaggttccgctc 34433671
Query: 386 cagcttggacagcgaccccatgtcagggt 414
|||||||||||||||||||||||||||||
Sbjct: 34433670 cagcttggacagcgaccccatgtcagggt 34433642
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 47 tcgcagaggctgaggccgcaccgcgaccgtcagtccgcccgccagcccagccatggccac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34449525 tcgcagaggctgaggccgcaccgcgaccgtcagtccgcccgccagcccagccatggccac 34449466
Query: 107 ttcagcccccgcgcctcggatc 128
||||||||||||||||||||||
Sbjct: 34449465 ttcagcccccgcgcctcggatc 34449444
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,253,274
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 6
Length of query: 1185
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1164
Effective length of database: 2,808,413,156
Effective search space: 3268992913584
Effective search space used: 3268992913584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)