Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030563.1| protein shisa-5 precursor [Bos taurus]. 120 3e-27
>ref|NP_001030563.1| protein shisa-5 precursor [Bos taurus].
Length = 216
Score = 120 bits (301), Expect = 3e-27
Identities = 61/135 (45%), Positives = 73/135 (54%)
Frame = +1
Query: 112 FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXX 291
FGT +A+G+T+FV++VVT+I+C TCSCC LYKMCRRP+P H
Sbjct: 94 FGTVIAIGVTLFVIAVVTVIVCCTCSCCCLYKMCRRPQPVVTTTMATTVTHT----PYLQ 149
Query: 292 XXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQ 471
TYQGYH HETMAGGAA+PYPASQ
Sbjct: 150 PPSYPGPTYQGYH--------SVVPQPGMPTAPYPTQPTGPPAYHETMAGGAALPYPASQ 201
Query: 472 PPYNPAYVDPPKAAP 516
PPYNPAY++PPKA P
Sbjct: 202 PPYNPAYMEPPKAVP 216
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,418,032
Number of extensions: 1754986
Number of successful extensions: 7394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7361
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,207,134
Effective search space: 4574697148
Effective search space used: 4574697148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis f... 139 4e-33
>ref|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis familiaris].
Length = 160
Score = 139 bits (351), Expect = 4e-33
Identities = 72/144 (50%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Frame = +1
Query: 88 LKAEANMGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRR-PRPXXXXXXXXXXXH 264
L ++ GFGTTVA+GLTIFVL+VVT+I+CFTCSCC LYKMCRR PRP H
Sbjct: 17 LDSDPMSGFGTTVAIGLTIFVLAVVTLIVCFTCSCCCLYKMCRRPPRPVVTTTTATTVVH 76
Query: 265 AXXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGG 444
TYQGYH HET+AGG
Sbjct: 77 TPYPQPPSVPPGYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYPAQPMGPPAYHETLAGG 136
Query: 445 AAMPYPASQPPYNPAYVDPPKAAP 516
AAMPYPASQPPYNPAY+DPPKAAP
Sbjct: 137 AAMPYPASQPPYNPAYMDPPKAAP 160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,605,111
Number of extensions: 1788627
Number of successful extensions: 7320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7297
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 321
Effective length of database: 15,340,888
Effective search space: 4924425048
Effective search space used: 4924425048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057563.3| protein shisa-5 precursor [Homo sapiens]. 132 5e-31
Alignment gi|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapien... 117 2e-26
Alignment gi|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapien... 117 2e-26
>ref|NP_057563.3| protein shisa-5 precursor [Homo sapiens].
Length = 240
Score = 132 bits (333), Expect = 5e-31
Identities = 69/135 (51%), Positives = 73/135 (54%)
Frame = +1
Query: 109 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXX 288
GFG T+AVGLTIFVLSVVTIIICFTCSCC LYK CRRPRP HA
Sbjct: 105 GFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPS 164
Query: 289 XXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPAS 468
+YQGYH HET+AGGAA PYPAS
Sbjct: 165 VPPSYPGPSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPAS 224
Query: 469 QPPYNPAYVDPPKAA 513
QPPYNPAY+D PKAA
Sbjct: 225 QPPYNPAYMDAPKAA 239
>ref|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapiens].
Length = 145
Score = 117 bits (294), Expect = 2e-26
Identities = 63/141 (44%), Positives = 70/141 (49%)
Frame = +1
Query: 124 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 303
VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP HA
Sbjct: 5 VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 64
Query: 304 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 483
+YQGY+ ET+AGGA PYP SQPPYN
Sbjct: 65 PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 124
Query: 484 PAYVDPPKAAP*AHLCISGCH 546
PAY+ PKAAP A +SGCH
Sbjct: 125 PAYIYAPKAAPGACPGLSGCH 145
>ref|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapiens].
Length = 154
Score = 117 bits (294), Expect = 2e-26
Identities = 63/141 (44%), Positives = 70/141 (49%)
Frame = +1
Query: 124 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 303
VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP HA
Sbjct: 14 VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 73
Query: 304 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 483
+YQGY+ ET+AGGA PYP SQPPYN
Sbjct: 74 PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 133
Query: 484 PAYVDPPKAAP*AHLCISGCH 546
PAY+ PKAAP A +SGCH
Sbjct: 134 PAYIYAPKAAPGACPGLSGCH 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,687,484
Number of extensions: 1772498
Number of successful extensions: 7246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7185
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,835,944
Effective search space: 4777173968
Effective search space used: 4777173968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus]. 91 1e-18
Alignment gi|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus]. 89 6e-18
>ref|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus].
Length = 132
Score = 91.3 bits (225), Expect = 1e-18
Identities = 54/139 (38%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 106 MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHA--XXXX 279
MGFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC RP HA
Sbjct: 1 MGFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCCPQRPVVTNTTTTTVVHAPYPQPQ 60
Query: 280 XXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPY 459
TYQGYH HE++AG
Sbjct: 61 PQPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQPTGPPPYHESLAG------ 114
Query: 460 PASQPPYNPAYVDPPKAAP 516
ASQPPYNP Y+D K P
Sbjct: 115 -ASQPPYNPTYMDSLKTIP 132
>ref|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus].
Length = 235
Score = 89.4 bits (220), Expect = 6e-18
Identities = 53/138 (38%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +1
Query: 109 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHA--XXXXX 282
GFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC RP HA
Sbjct: 105 GFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCCPQRPVVTNTTTTTVVHAPYPQPQP 164
Query: 283 XXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYP 462
TYQGYH HE++AG
Sbjct: 165 QPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQPTGPPPYHESLAG------- 217
Query: 463 ASQPPYNPAYVDPPKAAP 516
ASQPPYNP Y+D K P
Sbjct: 218 ASQPPYNPTYMDSLKTIP 235
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,903,422
Number of extensions: 1484731
Number of successful extensions: 6097
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6050
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 323
Effective length of database: 12,493,815
Effective search space: 4035502245
Effective search space used: 4035502245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430... 155 5e-38
Alignment gi|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa]. 151 9e-37
>ref|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430 [Sus scrofa].
Length = 137
Score = 155 bits (392), Expect = 5e-38
Identities = 80/137 (58%), Positives = 80/137 (58%)
Frame = +1
Query: 106 MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXX 285
MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP HA
Sbjct: 1 MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQPP 60
Query: 286 XXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPA 465
TYQGYH HETMAGGAAMPYPA
Sbjct: 61 SVPPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPYPA 120
Query: 466 SQPPYNPAYVDPPKAAP 516
SQPPYNPAYVDPPKAAP
Sbjct: 121 SQPPYNPAYVDPPKAAP 137
>ref|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa].
Length = 161
Score = 151 bits (381), Expect = 9e-37
Identities = 78/135 (57%), Positives = 78/135 (57%)
Frame = +1
Query: 112 FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXX 291
FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP HA
Sbjct: 27 FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQPPSV 86
Query: 292 XXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQ 471
TYQGYH HETMAGGAAMPYPASQ
Sbjct: 87 PPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPYPASQ 146
Query: 472 PPYNPAYVDPPKAAP 516
PPYNPAYVDPPKAAP
Sbjct: 147 PPYNPAYVDPPKAAP 161
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,403,933
Number of extensions: 1129173
Number of successful extensions: 4574
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4562
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 325
Effective length of database: 8,804,438
Effective search space: 2861442350
Effective search space used: 2861442350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007558
(1281 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1635 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1635 bits (825), Expect = 0.0
Identities = 838/843 (99%)
Strand = Plus / Plus
Query: 439 ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560573 ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 34560632
Query: 499 cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560633 cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 34560692
Query: 559 gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560693 gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 34560752
Query: 619 tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttcccagagttaatt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560753 tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttcccagagttaatt 34560812
Query: 679 gggaccatagcttgttcccttcctgacttgaaattatgcttctgaaatctcaagcaaaac 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560813 gggaccatagcttgttcccttcctgacttgaaattatgcttctgaaatctcaagcaaaac 34560872
Query: 739 tgaaagaatggttctcttccagacagcccagggaggccaaatgggggttgtcacactagg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560873 tgaaagaatggttctcttccagacagcccagggaggccaaatgggggttgtcacactagg 34560932
Query: 799 atagcacagctttttgtgggcacactgcacccgtgttccagtttctgaggaatgctggcc 858
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 34560933 atagcacagctttttgtgggcacagtgcacccgtgttccagtttctgaggaatgctggcc 34560992
Query: 859 actgctcaaggccatggcttgtccccagacttgccttcaaagaaccagagccgtgatgca 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560993 actgctcaaggccatggcttgtccccagacttgccttcaaagaaccagagccgtgatgca 34561052
Query: 919 aagtgggtgaggtgaggcttgggagcccgccagaggtgggtttcaacccttgtggcagac 978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 34561053 aagtgggtgaggtgaggcttgggagccagccagaggtgggtttcaacccttgtggcagac 34561112
Query: 979 agcccacagctcccacagcctgtgccttgcccattggagggagggtagcctcctgatatc 1038
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 34561113 agcccacagctcccacagcctgtgccttgcccattggagggagggcagcctcctgatatc 34561172
Query: 1039 aaaacatctcaggcagagccgcaccctccctcgagcactctctgcctggactcttgcatc 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561173 aaaacatctcaggcagagccgcaccctccctcgagcactctctgcctggactcttgcatc 34561232
Query: 1099 cttcctgggaccacctggaaagccacatttacccatggttctggctgccctgactcccgc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561233 cttcctgggaccacctggaaagccacatttacccatggttctggctgccctgactcccgc 34561292
Query: 1159 cacagatgcacangctggcctctgtctacctacacactcangtgtcatccctgcagtgtt 1218
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 34561293 cacagatgcacaggctggcctctgtctacctacacactcaggtgtcatccctgcagtgtt 34561352
Query: 1219 ttttgagctaaacattttacctgctttgtttcaaagtgtgtgttataattgctgtgaggc 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561353 ttttgagctaaacattttacctgctttgtttcaaagtgtgtgttataattgctgtgaggc 34561412
Query: 1279 tga 1281
|||
Sbjct: 34561413 tga 34561415
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 227 cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560277 cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 34560336
Query: 287 gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560337 gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 34560396
Query: 347 cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560397 cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 34560456
Query: 407 tgggtccccccgcctaccacgaaacaatggctgg 440
||||||||||||||||||||||||||||||||||
Sbjct: 34560457 tgggtccccccgcctaccacgaaacaatggctgg 34560490
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 110 ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560004 ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 34560063
Query: 170 tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 226
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Sbjct: 34560064 tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 34560120
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 ctttacttttcctggaaaggggaggagattgaaactgagtggccccatgatggaaagggg 60
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Sbjct: 34558543 ctttacttttcctggaaaggggaggagattgaaactgagtggccccatgatggaaagggg 34558602
Query: 61 aagtccaggggtataagaggcccctgactgaaggcggaggctaacatggggt 112
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Sbjct: 34558603 aagtccaggggtataagaggcccctgactgaaggcggaggctaacatggggt 34558654
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,831,966
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 4
Length of query: 1281
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1260
Effective length of database: 2,808,413,156
Effective search space: 3538600576560
Effective search space used: 3538600576560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)