Animal-Genome cDNA 20110601C-007558


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030563.1| protein shisa-5 precursor [Bos taurus].           120   3e-27

>ref|NP_001030563.1| protein shisa-5 precursor [Bos taurus].
          Length = 216

 Score =  120 bits (301), Expect = 3e-27
 Identities = 61/135 (45%), Positives = 73/135 (54%)
 Frame = +1

Query: 112 FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXX 291
           FGT +A+G+T+FV++VVT+I+C TCSCC LYKMCRRP+P           H         
Sbjct: 94  FGTVIAIGVTLFVIAVVTVIVCCTCSCCCLYKMCRRPQPVVTTTMATTVTHT----PYLQ 149

Query: 292 XXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQ 471
                  TYQGYH                               HETMAGGAA+PYPASQ
Sbjct: 150 PPSYPGPTYQGYH--------SVVPQPGMPTAPYPTQPTGPPAYHETMAGGAALPYPASQ 201

Query: 472 PPYNPAYVDPPKAAP 516
           PPYNPAY++PPKA P
Sbjct: 202 PPYNPAYMEPPKAVP 216


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,418,032
Number of extensions: 1754986
Number of successful extensions: 7394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7361
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,207,134
Effective search space: 4574697148
Effective search space used: 4574697148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis f...   139   4e-33

>ref|XP_851338.1| PREDICTED: similar to scotin isoform 1 [Canis familiaris].
          Length = 160

 Score =  139 bits (351), Expect = 4e-33
 Identities = 72/144 (50%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
 Frame = +1

Query: 88  LKAEANMGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRR-PRPXXXXXXXXXXXH 264
           L ++   GFGTTVA+GLTIFVL+VVT+I+CFTCSCC LYKMCRR PRP           H
Sbjct: 17  LDSDPMSGFGTTVAIGLTIFVLAVVTLIVCFTCSCCCLYKMCRRPPRPVVTTTTATTVVH 76

Query: 265 AXXXXXXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGG 444
                           TYQGYH                               HET+AGG
Sbjct: 77  TPYPQPPSVPPGYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYPAQPMGPPAYHETLAGG 136

Query: 445 AAMPYPASQPPYNPAYVDPPKAAP 516
           AAMPYPASQPPYNPAY+DPPKAAP
Sbjct: 137 AAMPYPASQPPYNPAYMDPPKAAP 160


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,605,111
Number of extensions: 1788627
Number of successful extensions: 7320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7297
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 321
Effective length of database: 15,340,888
Effective search space: 4924425048
Effective search space used: 4924425048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057563.3| protein shisa-5 precursor [Homo sapiens].            132   5e-31
Alignment   gi|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapien...   117   2e-26
Alignment   gi|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapien...   117   2e-26

>ref|NP_057563.3| protein shisa-5 precursor [Homo sapiens].
          Length = 240

 Score =  132 bits (333), Expect = 5e-31
 Identities = 69/135 (51%), Positives = 73/135 (54%)
 Frame = +1

Query: 109 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXX 288
           GFG T+AVGLTIFVLSVVTIIICFTCSCC LYK CRRPRP           HA       
Sbjct: 105 GFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPS 164

Query: 289 XXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPAS 468
                   +YQGYH                               HET+AGGAA PYPAS
Sbjct: 165 VPPSYPGPSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPAS 224

Query: 469 QPPYNPAYVDPPKAA 513
           QPPYNPAY+D PKAA
Sbjct: 225 QPPYNPAYMDAPKAA 239


>ref|XP_003118874.2| PREDICTED: protein shisa-5-like [Homo sapiens].
          Length = 145

 Score =  117 bits (294), Expect = 2e-26
 Identities = 63/141 (44%), Positives = 70/141 (49%)
 Frame = +1

Query: 124 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 303
           VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP           HA            
Sbjct: 5   VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 64

Query: 304 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 483
              +YQGY+                                ET+AGGA  PYP SQPPYN
Sbjct: 65  PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 124

Query: 484 PAYVDPPKAAP*AHLCISGCH 546
           PAY+  PKAAP A   +SGCH
Sbjct: 125 PAYIYAPKAAPGACPGLSGCH 145


>ref|XP_003120356.2| PREDICTED: protein shisa-5-like [Homo sapiens].
          Length = 154

 Score =  117 bits (294), Expect = 2e-26
 Identities = 63/141 (44%), Positives = 70/141 (49%)
 Frame = +1

Query: 124 VAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXXXXXX 303
           VA+ LT FVLSV+TIIICFTCSCC LYKMCRR RP           HA            
Sbjct: 14  VAISLTNFVLSVITIIICFTCSCCCLYKMCRRTRPVVTSITFTTVVHAPYTQPPSVPPSY 73

Query: 304 XXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQPPYN 483
              +YQGY+                                ET+AGGA  PYP SQPPYN
Sbjct: 74  PGSSYQGYYPMLPQPGMTAAPYPTQYPPPYSAQPMGPPAYQETLAGGATAPYPTSQPPYN 133

Query: 484 PAYVDPPKAAP*AHLCISGCH 546
           PAY+  PKAAP A   +SGCH
Sbjct: 134 PAYIYAPKAAPGACPGLSGCH 154


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,687,484
Number of extensions: 1772498
Number of successful extensions: 7246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7185
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,835,944
Effective search space: 4777173968
Effective search space used: 4777173968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus].             91   1e-18
Alignment   gi|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus].             89   6e-18

>ref|NP_080657.1| protein shisa-5 isoform 2 [Mus musculus].
          Length = 132

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 54/139 (38%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
 Frame = +1

Query: 106 MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHA--XXXX 279
           MGFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC   RP           HA      
Sbjct: 1   MGFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCCPQRPVVTNTTTTTVVHAPYPQPQ 60

Query: 280 XXXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPY 459
                      TYQGYH                               HE++AG      
Sbjct: 61  PQPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQPTGPPPYHESLAG------ 114

Query: 460 PASQPPYNPAYVDPPKAAP 516
            ASQPPYNP Y+D  K  P
Sbjct: 115 -ASQPPYNPTYMDSLKTIP 132


>ref|NP_080134.1| protein shisa-5 isoform 1 [Mus musculus].
          Length = 235

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 53/138 (38%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
 Frame = +1

Query: 109 GFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHA--XXXXX 282
           GFG TVA+G+TIFV+ + TIIICFTCSCC LYKMC   RP           HA       
Sbjct: 105 GFGATVAIGVTIFVVFIATIIICFTCSCCCLYKMCCPQRPVVTNTTTTTVVHAPYPQPQP 164

Query: 283 XXXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYP 462
                     TYQGYH                               HE++AG       
Sbjct: 165 QPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQPTGPPPYHESLAG------- 217

Query: 463 ASQPPYNPAYVDPPKAAP 516
           ASQPPYNP Y+D  K  P
Sbjct: 218 ASQPPYNPTYMDSLKTIP 235


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,903,422
Number of extensions: 1484731
Number of successful extensions: 6097
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6050
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 323
Effective length of database: 12,493,815
Effective search space: 4035502245
Effective search space used: 4035502245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430...   155   5e-38
Alignment   gi|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa].     151   9e-37

>ref|XP_001927092.1| PREDICTED: hypothetical protein LOC100154430 [Sus scrofa].
          Length = 137

 Score =  155 bits (392), Expect = 5e-38
 Identities = 80/137 (58%), Positives = 80/137 (58%)
 Frame = +1

Query: 106 MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXX 285
           MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP           HA      
Sbjct: 1   MGFGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQPP 60

Query: 286 XXXXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPA 465
                    TYQGYH                               HETMAGGAAMPYPA
Sbjct: 61  SVPPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPYPA 120

Query: 466 SQPPYNPAYVDPPKAAP 516
           SQPPYNPAYVDPPKAAP
Sbjct: 121 SQPPYNPAYVDPPKAAP 137


>ref|XP_003358475.1| PREDICTED: protein shisa-5-like [Sus scrofa].
          Length = 161

 Score =  151 bits (381), Expect = 9e-37
 Identities = 78/135 (57%), Positives = 78/135 (57%)
 Frame = +1

Query: 112 FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPXXXXXXXXXXXHAXXXXXXXX 291
           FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRP           HA        
Sbjct: 27  FGTTVAVGLTIFVLSVVTIIICFTCSCCYLYKMCRRPRPVVTTTTATTVVHAPYPQPPSV 86

Query: 292 XXXXXXXTYQGYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETMAGGAAMPYPASQ 471
                  TYQGYH                               HETMAGGAAMPYPASQ
Sbjct: 87  PPSYPGPTYQGYHSMPSQPAMPAAPYPTQYPPPYPAQPMGPPAYHETMAGGAAMPYPASQ 146

Query: 472 PPYNPAYVDPPKAAP 516
           PPYNPAYVDPPKAAP
Sbjct: 147 PPYNPAYVDPPKAAP 161


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,403,933
Number of extensions: 1129173
Number of successful extensions: 4574
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4562
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 325
Effective length of database: 8,804,438
Effective search space: 2861442350
Effective search space used: 2861442350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007558
         (1281 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1635   0.0  

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1635 bits (825), Expect = 0.0
 Identities = 838/843 (99%)
 Strand = Plus / Plus

                                                                            
Query: 439      ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 498
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560573 ggaggtgcggccatgccctaccctgccagtcagcctccttacaatccggcctacgtggat 34560632

                                                                            
Query: 499      cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 558
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560633 cccccgaaggcagctccctgagcacacctttgcatctctggctgccacttgatctgtcat 34560692

                                                                            
Query: 559      gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 618
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560693 gtgtgtatgtgaatgggtatgcaggcacggtcttgtttcttcccgtgcgtggtgtgtgtg 34560752

                                                                            
Query: 619      tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttcccagagttaatt 678
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560753 tcctatttgtacacgaagtttcttgtgaggggtgggggacaatccttcccagagttaatt 34560812

                                                                            
Query: 679      gggaccatagcttgttcccttcctgacttgaaattatgcttctgaaatctcaagcaaaac 738
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560813 gggaccatagcttgttcccttcctgacttgaaattatgcttctgaaatctcaagcaaaac 34560872

                                                                            
Query: 739      tgaaagaatggttctcttccagacagcccagggaggccaaatgggggttgtcacactagg 798
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560873 tgaaagaatggttctcttccagacagcccagggaggccaaatgggggttgtcacactagg 34560932

                                                                            
Query: 799      atagcacagctttttgtgggcacactgcacccgtgttccagtttctgaggaatgctggcc 858
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 34560933 atagcacagctttttgtgggcacagtgcacccgtgttccagtttctgaggaatgctggcc 34560992

                                                                            
Query: 859      actgctcaaggccatggcttgtccccagacttgccttcaaagaaccagagccgtgatgca 918
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560993 actgctcaaggccatggcttgtccccagacttgccttcaaagaaccagagccgtgatgca 34561052

                                                                            
Query: 919      aagtgggtgaggtgaggcttgggagcccgccagaggtgggtttcaacccttgtggcagac 978
                ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 34561053 aagtgggtgaggtgaggcttgggagccagccagaggtgggtttcaacccttgtggcagac 34561112

                                                                            
Query: 979      agcccacagctcccacagcctgtgccttgcccattggagggagggtagcctcctgatatc 1038
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 34561113 agcccacagctcccacagcctgtgccttgcccattggagggagggcagcctcctgatatc 34561172

                                                                            
Query: 1039     aaaacatctcaggcagagccgcaccctccctcgagcactctctgcctggactcttgcatc 1098
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561173 aaaacatctcaggcagagccgcaccctccctcgagcactctctgcctggactcttgcatc 34561232

                                                                            
Query: 1099     cttcctgggaccacctggaaagccacatttacccatggttctggctgccctgactcccgc 1158
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561233 cttcctgggaccacctggaaagccacatttacccatggttctggctgccctgactcccgc 34561292

                                                                            
Query: 1159     cacagatgcacangctggcctctgtctacctacacactcangtgtcatccctgcagtgtt 1218
                |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 34561293 cacagatgcacaggctggcctctgtctacctacacactcaggtgtcatccctgcagtgtt 34561352

                                                                            
Query: 1219     ttttgagctaaacattttacctgctttgtttcaaagtgtgtgttataattgctgtgaggc 1278
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34561353 ttttgagctaaacattttacctgctttgtttcaaagtgtgtgttataattgctgtgaggc 34561412

                   
Query: 1279     tga 1281
                |||
Sbjct: 34561413 tga 34561415



 Score =  424 bits (214), Expect = e-116
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                            
Query: 227      cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 286
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560277 cagtcgtgactaccaccacggccactacagtggtacacgccccttacccgcaacctccaa 34560336

                                                                            
Query: 287      gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560337 gtgtgccacccagctatccaggaccgacgtaccagggctaccattccatgccctcccagc 34560396

                                                                            
Query: 347      cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 406
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560397 cagcgatgccagctgcaccctacccgacgcagtacccaccaccctacccagcccagccca 34560456

                                                  
Query: 407      tgggtccccccgcctaccacgaaacaatggctgg 440
                ||||||||||||||||||||||||||||||||||
Sbjct: 34560457 tgggtccccccgcctaccacgaaacaatggctgg 34560490



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 110      ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560004 ggtttggaacgactgtagctgtcggcctgactatctttgtgctgtctgttgtcaccatca 34560063

                                                                         
Query: 170      tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 226
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34560064 tcatctgcttcacctgctcctgctgctatttgtacaagatgtgccgccgaccacgtc 34560120



 Score =  222 bits (112), Expect = 4e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctttacttttcctggaaaggggaggagattgaaactgagtggccccatgatggaaagggg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558543 ctttacttttcctggaaaggggaggagattgaaactgagtggccccatgatggaaagggg 34558602

                                                                    
Query: 61       aagtccaggggtataagaggcccctgactgaaggcggaggctaacatggggt 112
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558603 aagtccaggggtataagaggcccctgactgaaggcggaggctaacatggggt 34558654


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,831,966
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 4
Length of query: 1281
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1260
Effective length of database: 2,808,413,156
Effective search space: 3538600576560
Effective search space used: 3538600576560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)