Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus]. 889 0.0
Alignment gi|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus]. 803 0.0
Alignment gi|NP_001069707.1| glutamate-rich WD repeat-containing protein ... 122 1e-27
Alignment gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li... 94 3e-19
Alignment gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part... 94 3e-19
Alignment gi|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus]. 89 1e-17
Alignment gi|NP_001178407.1| transcription initiation factor TFIID subuni... 88 2e-17
Alignment gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 88 2e-17
Alignment gi|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos tauru... 81 2e-15
Alignment gi|NP_001193007.1| WD repeat-containing protein 33 [Bos taurus]. 80 7e-15
>ref|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus].
Length = 425
Score = 889 bits (2297), Expect = 0.0
Identities = 423/425 (99%), Positives = 424/425 (99%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTT +L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTPEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
>ref|NP_001069707.1| glutamate-rich WD repeat-containing protein 1 [Bos taurus].
Length = 446
Score = 122 bits (305), Expect = 1e-27
Identities = 100/357 (28%), Positives = 159/357 (44%), Gaps = 27/357 (7%)
Frame = +1
Query: 499 WLVLGTHT-SDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK-IN 672
+L GT S + N L++ R+H + D E+ E K + E+ +
Sbjct: 88 YLCAGTQAESSQSNRLMMLRMHNLHGTKPPPPEGSDDEEEEDDEEDEEERKPQLELAMVP 147
Query: 673 HEGEVNRAR--YMPQNPHIIATKTPSSDVLVFDYTKH-PAKPDPSG----------ECNP 813
H G +NR R ++ + P + + V VF + DP P
Sbjct: 148 HYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFLRDEQTRMKP 206
Query: 814 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI--VDAKAIFTGHS 987
GH EG+ L W+ + G LL+ + LW P +G VD + F GH+
Sbjct: 207 IFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWT----PTDGGSWHVDQRP-FVGHT 261
Query: 988 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDA--HTAEVNCLSFNPYS 1161
VED+ W +++F S + D + IWD R+ SK L A H +VN ++++
Sbjct: 262 RSVEDLQWSPTEDTVFASCSADASIRIWDIRA-APSKACMLTTATAHDGDVNVINWSHRE 320
Query: 1162 EFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 1335
F+L+ G D + +WDLR K + TF+ H + V W P + + A+SG D ++
Sbjct: 321 PFLLSGGD-DGALKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQIT 379
Query: 1336 VWDLSKIGEEQSAEDAE------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 1488
WDL+ + + A DAE D P +LLF+H G T + + W+P P V+ S +
Sbjct: 380 QWDLA-VERDPEAGDAETDPGLADLPQQLLFVHQGET-DLKELHWHPQCPGVLVSTA 434
>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
Length = 589
Score = 94.0 bits (232), Expect = 3e-19
Identities = 73/251 (29%), Positives = 122/251 (48%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGH Y + ++ SG LLS S+D ++ WD+ + ++ GH+ V D
Sbjct: 338 LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ H F S + D+ +W S + P + H A+V+C+ F+P S + LATG
Sbjct: 390 LDISP-HSLYFASASHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 444
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 1362
S DKTV LW + + F H+ + + +SP N LAS+G D+RL +WDL+
Sbjct: 445 STDKTVRLWSTQQGN-SVRLFTGHRGPVLSLAFSP-NGKYLASAGEDQRLKLWDLAS--- 499
Query: 1363 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 1542
L GHT I+ +++P+ ++ S S DN +++W + + +
Sbjct: 500 -----------GTLYKELRGHTDNITSLTFSPDSS-LVASASMDNSVRVWDIRSS-HCST 546
Query: 1543 ESDVTTSDLEG 1575
+D ++S+L G
Sbjct: 547 PADGSSSELVG 557
>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
Length = 265
Score = 94.0 bits (232), Expect = 3e-19
Identities = 73/251 (29%), Positives = 122/251 (48%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGH Y + ++ SG LLS S+D ++ WD+ + ++ GH+ V D
Sbjct: 14 LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 65
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ H F S + D+ +W S + P + H A+V+C+ F+P S + LATG
Sbjct: 66 LDISP-HSLYFASASHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 120
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 1362
S DKTV LW + + F H+ + + +SP N LAS+G D+RL +WDL+
Sbjct: 121 STDKTVRLWSTQQGN-SVRLFTGHRGPVLSLAFSP-NGKYLASAGEDQRLKLWDLAS--- 175
Query: 1363 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 1542
L GHT I+ +++P+ ++ S S DN +++W + + +
Sbjct: 176 -----------GTLYKELRGHTDNITSLTFSPDSS-LVASASMDNSVRVWDIRSS-HCST 222
Query: 1543 ESDVTTSDLEG 1575
+D ++S+L G
Sbjct: 223 PADGSSSELVG 233
>ref|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus].
Length = 323
Score = 89.0 bits (219), Expect = 1e-17
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 1/215 (0%)
Frame = +1
Query: 712 NPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL- 888
N H++ T + + ++D + P + H +E Y + W+ L+
Sbjct: 79 NEHVLVTCSGDGSLQLWDTAR---------ATGPLQVFKEHTQEVYSVDWSQTRGEQLVV 129
Query: 889 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMI 1068
S S D TV LWD P GK + F GH +V+ W F S + DQ L I
Sbjct: 130 SGSWDQTVKLWD----PTVGKSL---CTFRGHESVIYSTIWSPHIPGCFASSSGDQTLRI 182
Query: 1069 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE 1248
WD + T+ +V AH AE+ + Y+E ++ TG+ D ++ WDLRN++ +
Sbjct: 183 WDVK---TTGVRIVVPAHQAEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVQQPVFELL 239
Query: 1249 SHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 1353
H I +V +SP + ++LAS D + W+ SK
Sbjct: 240 GHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSK 274
Score = 72.8 bits (177), Expect = 8e-13
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 3/229 (1%)
Frame = +1
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLL 1020
+ ++W+ N L++ S D ++ LWD GP + +F H+ V V W
Sbjct: 71 FDVTWSENNEHVLVTCSGDGSLQLWDTARATGPLQ--------VFKEHTQEVYSVDWSQT 122
Query: 1021 H-ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 1197
E L S + DQ + +WD T K H + + ++P+ A+ S D+T
Sbjct: 123 RGEQLVVSGSWDQTVKLWDP---TVGKSLCTFRGHESVIYSTIWSPHIPGCFASSSGDQT 179
Query: 1198 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 1377
+ +WD++ +++ +H+ EI W +NE ++ + D L WDL + +
Sbjct: 180 LRIWDVKTTGVRI-VVPAHQAEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVQQPVF-- 236
Query: 1378 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 1524
ELL GHT I ++P V+ S S D ++ W ++
Sbjct: 237 -------ELL----GHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSK 274
Score = 70.1 bits (170), Expect = 5e-12
Identities = 45/173 (26%), Positives = 76/173 (43%)
Frame = +1
Query: 826 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 1005
RGH+ Y W+ ++ G S+S D T+ +WD+ K + + H A +
Sbjct: 152 RGHESVIYSTIWSPHIPGCFASSSGDQTLRIWDV-------KTTGVRIVVPAHQAEILSC 204
Query: 1006 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 1185
W +E+L + A D L WD R+ +P + HT + + F+P+ +LA+ S
Sbjct: 205 DWCKYNENLVVTGAVDCSLRGWDLRN--VQQPVFELLGHTYAIRRVKFSPFHASVLASCS 262
Query: 1186 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 1344
D TV W+ L T E H + + S + T +A D + ++D
Sbjct: 263 YDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCAWDETIKIYD 315
Score = 69.7 bits (169), Expect = 7e-12
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDH-------TVCLWDIN-AGPKEGKIVDAK-AIF 975
LR + GY ++ L G L A+ H T+ + D N +G + + D +F
Sbjct: 12 LRVPGRHGYAAEFSPYLPGRLACAASQHYGIAGSGTLLILDQNESGLRLFRSFDWNDGLF 71
Query: 976 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 1155
DV W +E + + + D L +WDT T P + HT EV + ++
Sbjct: 72 --------DVTWSENNEHVLVTCSGDGSLQLWDTARATG--PLQVFKEHTQEVYSVDWSQ 121
Query: 1156 Y-SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 1332
E ++ +GS D+TV LWD + L TF H+ I+ WSPH ASS D+ L
Sbjct: 122 TRGEQLVVSGSWDQTVKLWD-PTVGKSLCTFRGHESVIYSTIWSPHIPGCFASSSGDQTL 180
Query: 1333 NVWDLSKIG 1359
+WD+ G
Sbjct: 181 RIWDVKTTG 189
>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
Length = 800
Score = 88.2 bits (217), Expect = 2e-17
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L GH YG S++ + + +LLS+S+D TV LW + + GH+ V D
Sbjct: 539 LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSLQT-------FTCLVGYKGHNYPVWD 590
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S D+ +W T +P + H A+VNC F+P S ++ ATG
Sbjct: 591 TQFSP-YGYYFVSGGHDRVARLWATDHY---QPLRIFAGHLADVNCTRFHPNSNYV-ATG 645
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS---K 1353
SAD+TV LWD+ N + F HK I + +SP N LA+ TD R+ +WD+
Sbjct: 646 SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSP-NGRFLATGATDGRVLLWDIGHGLM 703
Query: 1354 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 1533
+GE + GHT + ++ + ++ S S DN +++W +
Sbjct: 704 VGELK-----------------GHTDTVCSLRFS-RDGEILASGSMDNTVRLWDAVKAFE 745
Query: 1534 NDEESDVTTS 1563
+ E D TT+
Sbjct: 746 DVETDDFTTA 755
>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 88.2 bits (217), Expect = 2e-17
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L GH YG S++ + + +LLS+S+D TV LW + + GH+ V D
Sbjct: 539 LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSLQT-------FTCLVGYKGHNYPVWD 590
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S D+ +W T +P + H A+VNC F+P S ++ ATG
Sbjct: 591 TQFSP-YGYYFVSGGHDRVARLWATDHY---QPLRIFAGHLADVNCTRFHPNSNYV-ATG 645
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS---K 1353
SAD+TV LWD+ N + F HK I + +SP N LA+ TD R+ +WD+
Sbjct: 646 SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSP-NGRFLATGATDGRVLLWDIGHGLM 703
Query: 1354 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 1533
+GE + GHT + ++ + ++ S S DN +++W +
Sbjct: 704 VGELK-----------------GHTDTVCSLRFS-RDGEILASGSMDNTVRLWDAVKAFE 745
Query: 1534 NDEESDVTTS 1563
+ E D TT+
Sbjct: 746 DVETDDFTTA 755
>ref|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos taurus].
Length = 423
Score = 81.3 bits (199), Expect = 2e-15
Identities = 52/174 (29%), Positives = 90/174 (51%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH++ + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 249 PIVTLSGHKEAISSVLWSD--AEEICSASWDHTIKVWDVESG-------SLKSTLTGNK- 298
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 299 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 1332
L +GS D V LWD R+ K L+ +H+D++ V W+ + +L S G D +L
Sbjct: 358 LISGSLDNMVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--DSGLLLSGGADNKL 409
Score = 58.2 bits (139), Expect = 2e-08
Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 26/254 (10%)
Frame = +1
Query: 829 GHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
GH ++W +LS LLSAS D T+ LW+ N E V A GH+ V+
Sbjct: 138 GHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNV---ERNKVKALHCCRGHAGSVDS 194
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDT-----------------------RSNTTSKPSHLV 1113
+A F S + D+ L IW T + T P +
Sbjct: 195 IAVDSTGTK-FCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTL 253
Query: 1114 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ-VHWSPH 1290
H ++ + ++ E + + S D T+ +WD+ + LK T +K +F + +SP
Sbjct: 254 SGHKEAISSVLWSDAEE--ICSASWDHTIKVWDVESGSLK-STLTGNK--VFNCISYSPL 308
Query: 1291 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 1470
+ LAS TDR + +WD +DG L + HT ++ W+P
Sbjct: 309 CKR-LASGSTDRHIRLWD----------PRTKDGSLVSLSLTS-HTGWVTSVKWSPTHEQ 356
Query: 1471 VICSVSEDNIMQIW 1512
+ S S DN++++W
Sbjct: 357 QLISGSLDNMVKLW 370
Score = 57.4 bits (137), Expect = 4e-08
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Frame = +1
Query: 976 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 1155
+GH + V W E S + D + +WD S + NC+S++P
Sbjct: 254 SGHKEAISSVLWSDAEEIC--SASWDHTIKVWDVESGSLKSTL----TGNKVFNCISYSP 307
Query: 1156 YSEFILATGSADKTVALWDLRNLKLKLHTFE--SHKDEIFQVHWSPHNETILASSGTDRR 1329
+ LA+GS D+ + LWD R L + SH + V WSP +E L S D
Sbjct: 308 LCKR-LASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNM 366
Query: 1330 LNVWD-------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP 1458
+ +WD L + + + D L + GG K+ + ++P
Sbjct: 367 VKLWDTRSCKAPLYDLAAHEDKVLSVDWTDSGLLLSGGADNKLYSYRYSP 416
>ref|NP_001193007.1| WD repeat-containing protein 33 [Bos taurus].
Length = 1336
Score = 79.7 bits (195), Expect = 7e-15
Identities = 65/209 (31%), Positives = 92/209 (44%), Gaps = 1/209 (0%)
Frame = +1
Query: 889 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQKLM 1065
+ SDD TV +WD +E I GH A V+ V WH + GS Q +
Sbjct: 219 TCSDDGTVRIWDFLRCHEE-------RILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIK 271
Query: 1066 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 1245
WD ++ + H AH V + N ++L T S D L+D+RNLK +L F
Sbjct: 272 FWDPKTGQSLATLH---AHKNTVMEVKLNLNGNWLL-TASRDHLCKLFDIRNLKEELQVF 327
Query: 1246 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 1425
HK E V W P +E + AS G+D L W +G E+ E G E+ H
Sbjct: 328 RGHKKEATAVAWHPVHEGLFASGGSDGSLLFW---HVGVEK-----EVGGMEM-----AH 374
Query: 1426 TAKISDFSWNPNEPWVICSVSEDNIMQIW 1512
I +W+P ++CS S D+ + W
Sbjct: 375 EGMIWSLAWHP-LGHILCSGSNDHTSKFW 402
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/234 (19%), Positives = 99/234 (42%), Gaps = 2/234 (0%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L+ H ++W+ N +L+A V W N ++ +F H + +
Sbjct: 157 LQAHDSPVRAMTWSHN-DMWMLTADHGGYVKYWQSN--------MNNVKMFQAHKEAIRE 207
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
++ ++ F + +DD + IWD ++ H A+V C+ ++P ++ ++ +G
Sbjct: 208 ASFSPT-DNKFATCSDDGTVRIWDF---LRCHEERILRGHGADVKCVDWHP-TKGLVVSG 262
Query: 1183 SAD--KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 1356
S D + + WD + + L T +HK+ + +V + + +L +S D ++D+ +
Sbjct: 263 SKDSQQPIKFWDPKTGQ-SLATLHAHKNTVMEVKLNLNGNWLLTAS-RDHLCKLFDIRNL 320
Query: 1357 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 1518
EE L + GH + + +W+P + S D + W +
Sbjct: 321 KEE-------------LQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHV 361
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,350,967
Number of extensions: 1753929
Number of successful extensions: 8113
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 7477
Number of HSP's successfully gapped: 166
Length of query: 532
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,140,958
Effective search space: 6009907150
Effective search space used: 6009907150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857851.1| PREDICTED: similar to retinoblastoma binding pr... 891 0.0
Alignment gi|XP_858100.1| PREDICTED: similar to retinoblastoma binding pr... 886 0.0
Alignment gi|XP_849201.1| PREDICTED: similar to retinoblastoma binding pr... 883 0.0
Alignment gi|XP_857969.1| PREDICTED: similar to retinoblastoma binding pr... 879 0.0
Alignment gi|XP_858055.1| PREDICTED: similar to retinoblastoma binding pr... 865 0.0
Alignment gi|XP_537971.2| PREDICTED: similar to retinoblastoma binding pr... 849 0.0
Alignment gi|XP_858215.1| PREDICTED: similar to retinoblastoma binding pr... 823 0.0
Alignment gi|XP_858015.1| PREDICTED: similar to retinoblastoma binding pr... 822 0.0
Alignment gi|XP_864445.1| PREDICTED: similar to retinoblastoma binding pr... 803 0.0
Alignment gi|XP_864423.1| PREDICTED: similar to retinoblastoma binding pr... 803 0.0
>ref|XP_857851.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 4
[Canis familiaris].
Length = 425
Score = 891 bits (2302), Expect = 0.0
Identities = 424/425 (99%), Positives = 425/425 (100%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|XP_858100.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 9
[Canis familiaris].
Length = 426
Score = 886 bits (2290), Expect = 0.0
Identities = 424/426 (99%), Positives = 425/426 (99%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKG-EFGGFGSVTGKIECEIK 666
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKG EFGGFGSVTGKIECEIK
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGAEFGGFGSVTGKIECEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE
Sbjct: 181 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
Sbjct: 301 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSE 420
Query: 1567 LEGQGS 1584
LEGQGS
Sbjct: 421 LEGQGS 426
>ref|XP_849201.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 3
[Canis familiaris].
Length = 469
Score = 883 bits (2282), Expect = 0.0
Identities = 421/436 (96%), Positives = 425/436 (97%)
Frame = +1
Query: 277 GGGEGQTTRRKMASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWL 456
G G G + + +FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWL
Sbjct: 34 GVGRGAPAQMGRHLRTVFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWL 93
Query: 457 PEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGS 636
PEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGS
Sbjct: 94 PEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGS 153
Query: 637 VTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD 816
VTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD
Sbjct: 154 VTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD 213
Query: 817 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 996
LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV
Sbjct: 214 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 273
Query: 997 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 1176
EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA
Sbjct: 274 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 333
Query: 1177 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 1356
TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI
Sbjct: 334 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 393
Query: 1357 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 1536
GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN
Sbjct: 394 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 453
Query: 1537 DEESDVTTSDLEGQGS 1584
DEESDVTTS+LEGQGS
Sbjct: 454 DEESDVTTSELEGQGS 469
>ref|XP_857969.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 6
[Canis familiaris].
Length = 425
Score = 879 bits (2271), Expect = 0.0
Identities = 419/425 (98%), Positives = 421/425 (99%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPE + GKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEKSAISGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|XP_858055.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 8
[Canis familiaris].
Length = 416
Score = 865 bits (2234), Expect = 0.0
Identities = 415/425 (97%), Positives = 416/425 (97%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKG GKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKG---------GKIECEIKI 111
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 112 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 171
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 172 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 231
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 232 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 291
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 292 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 351
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 352 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 411
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 412 EGQGS 416
>ref|XP_537971.2| PREDICTED: similar to retinoblastoma binding protein 7 isoform 1
[Canis familiaris].
Length = 405
Score = 849 bits (2194), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 1518
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 403
>ref|XP_858215.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 11
[Canis familiaris].
Length = 399
Score = 823 bits (2127), Expect = 0.0
Identities = 398/425 (93%), Positives = 399/425 (93%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK----- 295
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 296 ---------------------VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 334
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 335 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 394
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 395 EGQGS 399
>ref|XP_858015.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 7
[Canis familiaris].
Length = 391
Score = 822 bits (2123), Expect = 0.0
Identities = 390/391 (99%), Positives = 391/391 (100%)
Frame = +1
Query: 412 MTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDA 591
MTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDA
Sbjct: 1 MTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDA 60
Query: 592 SHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYT 771
SHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYT
Sbjct: 61 SHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYT 120
Query: 772 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 951
KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK
Sbjct: 121 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 180
Query: 952 IVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE 1131
IVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE
Sbjct: 181 IVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE 240
Query: 1132 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 1311
VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS
Sbjct: 241 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 300
Query: 1312 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 1491
SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE
Sbjct: 301 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 360
Query: 1492 DNIMQIWQMAENIYNDEESDVTTSDLEGQGS 1584
DNIMQIWQMAENIYNDEESDVTTS+LEGQGS
Sbjct: 361 DNIMQIWQMAENIYNDEESDVTTSELEGQGS 391
>ref|XP_864445.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 8
[Canis familiaris].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
>ref|XP_864423.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 7
[Canis familiaris].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,251,966
Number of extensions: 1823136
Number of successful extensions: 8835
Number of sequences better than 1.0e-05: 165
Number of HSP's gapped: 7874
Number of HSP's successfully gapped: 264
Length of query: 532
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 424
Effective length of database: 15,274,216
Effective search space: 6476267584
Effective search space used: 6476267584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033057.3| histone-binding protein RBBP7 [Mus musculus]. 888 0.0
Alignment gi|NP_033056.2| histone-binding protein RBBP4 [Mus musculus]. 803 0.0
Alignment gi|NP_700468.2| glutamate-rich WD repeat-containing protein 1 [... 121 1e-27
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated... 92 2e-18
Alignment gi|NP_032848.1| peroxisomal biogenesis factor 7 isoform 1 [Mus ... 88 2e-17
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 88 2e-17
Alignment gi|NP_001185989.1| ribosome biogenesis protein WDR12 [Mus muscu... 80 6e-15
Alignment gi|NP_001185990.1| ribosome biogenesis protein WDR12 [Mus muscu... 80 6e-15
Alignment gi|NP_067287.1| ribosome biogenesis protein WDR12 [Mus musculus]. 80 6e-15
Alignment gi|NP_083142.2| WD repeat domain 33 isoform 1 [Mus musculus]. 80 6e-15
>ref|NP_033057.3| histone-binding protein RBBP7 [Mus musculus].
Length = 425
Score = 888 bits (2294), Expect = 0.0
Identities = 422/425 (99%), Positives = 424/425 (99%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDS+KGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVT S+L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTASEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|NP_033056.2| histone-binding protein RBBP4 [Mus musculus].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
>ref|NP_700468.2| glutamate-rich WD repeat-containing protein 1 [Mus musculus].
Length = 446
Score = 121 bits (304), Expect = 1e-27
Identities = 98/356 (27%), Positives = 156/356 (43%), Gaps = 26/356 (7%)
Frame = +1
Query: 499 WLVLGTHTSDEQ-NHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK-IN 672
+L GT Q N L++ R+H + + D ++ + K + E+ +
Sbjct: 88 YLCAGTQAESAQSNRLMMLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQLELAMVP 147
Query: 673 HEGEVNRAR--YMPQNPHIIATKTPSSDVLVFDYTK------HPAK-----PDPSGECNP 813
H G +NR R ++ + P + + V VF + P D P
Sbjct: 148 HYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKP 206
Query: 814 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI--VDAKAIFTGHS 987
GH EG+ L W+ + G LL+ V LW P EG VD + F GH+
Sbjct: 207 IFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWT----PTEGGSWNVDQRP-FVGHT 261
Query: 988 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDA--HTAEVNCLSFNPYS 1161
VED+ W +++F S + D + IWD R+ K L A H +VN +S++
Sbjct: 262 RSVEDLQWSPTEDTVFASCSADASIRIWDIRA-APGKACMLTTATAHDGDVNVISWSRRE 320
Query: 1162 EFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 1335
F+L+ G D + +WDLR K + TF+ H + V W P + + A+SG D ++
Sbjct: 321 PFLLSGGD-DGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQIT 379
Query: 1336 VWDLSKIGEEQSAEDAEDG-----PPELLFIHGGHTAKISDFSWNPNEPWVICSVS 1488
WDL+ + +S E D P +LLF+H G T + + W+P P V+ S +
Sbjct: 380 QWDLAVERDPESGETETDPGLAALPQQLLFVHQGET-DLKELHWHPQCPGVLISTA 434
>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L [Mus musculus].
Length = 589
Score = 91.7 bits (226), Expect = 2e-18
Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 1/252 (0%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGH Y + ++ SG LLS S+D ++ WD+ + ++ GH+ V D
Sbjct: 338 LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389
Query: 1003 VAWHLLHESL-FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 1179
V + SL F S + D+ +W S + P + H A+V+C+ F+P S + LAT
Sbjct: 390 V--DISPFSLYFASGSHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LAT 443
Query: 1180 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 1359
GS DKTV LW + + F H+ + + +SP N LAS+G D+RL +WDL+
Sbjct: 444 GSTDKTVRLWSAQQGN-SVRLFTGHRGPVLSLSFSP-NGKYLASAGEDQRLKLWDLAS-- 499
Query: 1360 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYND 1539
L GHT I+ +++P + +I S S DN +++W + N
Sbjct: 500 ------------GTLFKELRGHTDSITSLAFSP-DSGLIASASMDNSVRVWDIRSTCCN- 545
Query: 1540 EESDVTTSDLEG 1575
+D ++ +L G
Sbjct: 546 TPADGSSGELVG 557
>ref|NP_032848.1| peroxisomal biogenesis factor 7 isoform 1 [Mus musculus].
Length = 318
Score = 87.8 bits (216), Expect = 2e-17
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 1/215 (0%)
Frame = +1
Query: 712 NPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL- 888
N H++ T + + ++D K P + H +E Y + W+ L+
Sbjct: 74 NEHVLVTCSGDGSLQLWDTAK---------ATGPLQVYKEHTQEVYSVDWSQTRGEQLVV 124
Query: 889 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMI 1068
S S D TV +WD G ++ F GH +V+ W F S + DQ L I
Sbjct: 125 SGSWDQTVKVWDPTVG-------NSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRI 177
Query: 1069 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE 1248
WD + T+ ++ AH E+ + Y+E ++ TG+ D ++ WDLRN++ +
Sbjct: 178 WDVK---TTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELL 234
Query: 1249 SHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 1353
H I +V +SP + ++LAS D + W+ SK
Sbjct: 235 GHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSK 269
Score = 72.0 bits (175), Expect = 1e-12
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 1/227 (0%)
Frame = +1
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLH- 1023
+ ++W+ N L++ S D ++ LWD K ++ H+ V V W
Sbjct: 66 FDVTWSENNEHVLVTCSGDGSLQLWDT------AKATGPLQVYKEHTQEVYSVDWSQTRG 119
Query: 1024 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 1203
E L S + DQ + +WD T H + + ++P+ A+ S D+T+
Sbjct: 120 EQLVVSGSWDQTVKVWDP---TVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLR 176
Query: 1204 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA 1383
+WD++ +++ +H+ EI W +NE ++ + D L WDL + +
Sbjct: 177 IWDVKTTGVRI-VIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVF---- 231
Query: 1384 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 1524
ELL GHT I ++P V+ S S D ++ W ++
Sbjct: 232 -----ELL----GHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSK 269
Score = 69.7 bits (169), Expect = 6e-12
Identities = 45/173 (26%), Positives = 75/173 (43%)
Frame = +1
Query: 826 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 1005
RGH+ Y W+ ++ G SAS D T+ +WD+ K + + H +
Sbjct: 147 RGHESVIYSTIWSPHIPGCFASASGDQTLRIWDV-------KTTGVRIVIPAHQTEILSC 199
Query: 1006 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 1185
W +E+L + A D L WD R+ +P + HT + + F+P+ +LA+ S
Sbjct: 200 DWCKYNENLVVTGAVDCSLRGWDLRN--VRQPVFELLGHTYAIRRVKFSPFHASVLASCS 257
Query: 1186 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 1344
D TV W+ L T E H + + S + T +A D + ++D
Sbjct: 258 YDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCSWDETIKIYD 310
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 87.8 bits (216), Expect = 2e-17
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L GH YG S++ + + +LLS+S+D TV LW + + GH+ V D
Sbjct: 540 LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSLQT-------FTCLVGYKGHNYPVWD 591
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S D+ +W T +P + H A+VNC F+P S ++ ATG
Sbjct: 592 TQFSP-YGYYFVSGGHDRVARLWATDHY---QPLRIFAGHLADVNCTRFHPNSNYV-ATG 646
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS---K 1353
SAD+TV LWD+ N + F HK I + +SP N LA+ TD R+ +WD+
Sbjct: 647 SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSP-NGRFLATGATDGRVLLWDIGHGLM 704
Query: 1354 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 1533
+GE + GHT + ++ + ++ S S DN +++W +
Sbjct: 705 VGELK-----------------GHTDTVCSLRFS-RDGEILASGSMDNTVRLWDAVKAFE 746
Query: 1534 NDEESDVTTS 1563
+ E D TT+
Sbjct: 747 DLETDDFTTA 756
>ref|NP_001185989.1| ribosome biogenesis protein WDR12 [Mus musculus].
Length = 423
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH + + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 249 PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 299 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 1350
L +GS D V LWD R+ K L+ +H+D++ V W+ + +L S G D +L + S
Sbjct: 358 LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--DTGLLLSGGADNKLYSYSYS 415
Score = 59.3 bits (142), Expect = 8e-09
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Frame = +1
Query: 829 GHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
GH ++W +LS LL+AS D TV LW+ N E V A GH+ V+
Sbjct: 138 GHTDVVKDVAWVKKDSLSCLLLTASMDQTVLLWEWNV---EKNKVKALHCCRGHAGSVDA 194
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDT-----------------------RSNTTSKPSHLV 1113
+A + F S + D+ L IW T + T P +
Sbjct: 195 IAVDS-SGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTPLVTL 253
Query: 1114 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ-VHWSPH 1290
HT ++ + ++ E + + S D T+ +WD+ + LK T +K +F + +SP
Sbjct: 254 SGHTEAISSVLWSDAEE--ICSASWDHTIRVWDVESGGLK-STLTGNK--VFNCISYSPL 308
Query: 1291 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 1470
+ LAS TDR + +WD +DG L + HT ++ W+P
Sbjct: 309 CKR-LASGSTDRHIRLWD----------PRTKDGSLVSLSLTS-HTGWVTSVKWSPTHEQ 356
Query: 1471 VICSVSEDNIMQIW 1512
+ S S DNI+++W
Sbjct: 357 QLISGSLDNIVKLW 370
>ref|NP_001185990.1| ribosome biogenesis protein WDR12 [Mus musculus].
Length = 423
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH + + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 249 PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 299 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 1350
L +GS D V LWD R+ K L+ +H+D++ V W+ + +L S G D +L + S
Sbjct: 358 LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--DTGLLLSGGADNKLYSYSYS 415
Score = 59.3 bits (142), Expect = 8e-09
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Frame = +1
Query: 829 GHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
GH ++W +LS LL+AS D TV LW+ N E V A GH+ V+
Sbjct: 138 GHTDVVKDVAWVKKDSLSCLLLTASMDQTVLLWEWNV---EKNKVKALHCCRGHAGSVDA 194
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDT-----------------------RSNTTSKPSHLV 1113
+A + F S + D+ L IW T + T P +
Sbjct: 195 IAVDS-SGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTPLVTL 253
Query: 1114 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ-VHWSPH 1290
HT ++ + ++ E + + S D T+ +WD+ + LK T +K +F + +SP
Sbjct: 254 SGHTEAISSVLWSDAEE--ICSASWDHTIRVWDVESGGLK-STLTGNK--VFNCISYSPL 308
Query: 1291 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 1470
+ LAS TDR + +WD +DG L + HT ++ W+P
Sbjct: 309 CKR-LASGSTDRHIRLWD----------PRTKDGSLVSLSLTS-HTGWVTSVKWSPTHEQ 356
Query: 1471 VICSVSEDNIMQIW 1512
+ S S DNI+++W
Sbjct: 357 QLISGSLDNIVKLW 370
>ref|NP_067287.1| ribosome biogenesis protein WDR12 [Mus musculus].
Length = 423
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH + + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 249 PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 299 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 1350
L +GS D V LWD R+ K L+ +H+D++ V W+ + +L S G D +L + S
Sbjct: 358 LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--DTGLLLSGGADNKLYSYSYS 415
Score = 59.3 bits (142), Expect = 8e-09
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Frame = +1
Query: 829 GHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
GH ++W +LS LL+AS D TV LW+ N E V A GH+ V+
Sbjct: 138 GHTDVVKDVAWVKKDSLSCLLLTASMDQTVLLWEWNV---EKNKVKALHCCRGHAGSVDA 194
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDT-----------------------RSNTTSKPSHLV 1113
+A + F S + D+ L IW T + T P +
Sbjct: 195 IAVDS-SGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTPLVTL 253
Query: 1114 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ-VHWSPH 1290
HT ++ + ++ E + + S D T+ +WD+ + LK T +K +F + +SP
Sbjct: 254 SGHTEAISSVLWSDAEE--ICSASWDHTIRVWDVESGGLK-STLTGNK--VFNCISYSPL 308
Query: 1291 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 1470
+ LAS TDR + +WD +DG L + HT ++ W+P
Sbjct: 309 CKR-LASGSTDRHIRLWD----------PRTKDGSLVSLSLTS-HTGWVTSVKWSPTHEQ 356
Query: 1471 VICSVSEDNIMQIW 1512
+ S S DNI+++W
Sbjct: 357 QLISGSLDNIVKLW 370
>ref|NP_083142.2| WD repeat domain 33 isoform 1 [Mus musculus].
Length = 1330
Score = 79.7 bits (195), Expect = 6e-15
Identities = 65/209 (31%), Positives = 92/209 (44%), Gaps = 1/209 (0%)
Frame = +1
Query: 889 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQKLM 1065
+ SDD TV +WD +E I GH A V+ V WH + GS Q +
Sbjct: 219 TCSDDGTVRIWDFLRCHEE-------RILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIK 271
Query: 1066 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 1245
WD ++ + H AH V + N ++L T S D L+D+RNLK +L F
Sbjct: 272 FWDPKTGQSLATLH---AHKNTVMEVKLNLNGNWLL-TASRDHLCKLFDIRNLKEELQVF 327
Query: 1246 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 1425
HK E V W P +E + AS G+D L W +G E+ E G E+ H
Sbjct: 328 RGHKKEATAVAWHPVHEGLFASGGSDGSLLFW---HVGVEK-----EVGGMEM-----AH 374
Query: 1426 TAKISDFSWNPNEPWVICSVSEDNIMQIW 1512
I +W+P ++CS S D+ + W
Sbjct: 375 EGMIWSLAWHP-LGHILCSGSNDHTSKFW 402
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/234 (19%), Positives = 99/234 (42%), Gaps = 2/234 (0%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L+ H ++W+ N +L+A V W N ++ +F H + +
Sbjct: 157 LQAHDSPVRAMTWSHN-DMWMLTADHGGYVKYWQSN--------MNNVKMFQAHKEAIRE 207
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
++ ++ F + +DD + IWD ++ H A+V C+ ++P ++ ++ +G
Sbjct: 208 ASFSPT-DNKFATCSDDGTVRIWDF---LRCHEERILRGHGADVKCVDWHP-TKGLVVSG 262
Query: 1183 SAD--KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 1356
S D + + WD + + L T +HK+ + +V + + +L +S D ++D+ +
Sbjct: 263 SKDSQQPIKFWDPKTGQ-SLATLHAHKNTVMEVKLNLNGNWLLTAS-RDHLCKLFDIRNL 320
Query: 1357 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 1518
EE L + GH + + +W+P + S D + W +
Sbjct: 321 KEE-------------LQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHV 361
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,177,060
Number of extensions: 1503783
Number of successful extensions: 6917
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 6323
Number of HSP's successfully gapped: 167
Length of query: 532
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 426
Effective length of database: 12,433,743
Effective search space: 5296774518
Effective search space used: 5296774518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo s... 890 0.0
Alignment gi|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Hom... 880 0.0
Alignment gi|NP_001128727.1| histone-binding protein RBBP4 isoform b [Hom... 807 0.0
Alignment gi|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo s... 803 0.0
Alignment gi|NP_001128728.1| histone-binding protein RBBP4 isoform c [Hom... 745 0.0
Alignment gi|NP_113673.3| glutamate-rich WD repeat-containing protein 1 [... 124 2e-28
Alignment gi|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated... 94 3e-19
Alignment gi|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens]. 92 2e-18
Alignment gi|NP_008882.2| transcription initiation factor TFIID subunit 5... 87 3e-17
Alignment gi|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens]. 81 3e-15
>ref|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo sapiens].
Length = 425
Score = 890 bits (2299), Expect = 0.0
Identities = 423/425 (99%), Positives = 425/425 (100%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDS+KGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Homo sapiens].
Length = 469
Score = 880 bits (2274), Expect = 0.0
Identities = 419/434 (96%), Positives = 423/434 (97%)
Frame = +1
Query: 283 GEGQTTRRKMASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPE 462
G R + +FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPE
Sbjct: 36 GRAAPVRTGRHLRTVFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPE 95
Query: 463 VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVT 642
VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDS+KGEFGGFGSVT
Sbjct: 96 VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVT 155
Query: 643 GKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR 822
GKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR
Sbjct: 156 GKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR 215
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED
Sbjct: 216 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 275
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG
Sbjct: 276 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 335
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 1362
SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE
Sbjct: 336 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 395
Query: 1363 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 1542
EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE
Sbjct: 396 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 455
Query: 1543 ESDVTTSDLEGQGS 1584
ESDVTTS+LEGQGS
Sbjct: 456 ESDVTTSELEGQGS 469
>ref|NP_001128727.1| histone-binding protein RBBP4 isoform b [Homo sapiens].
Length = 424
Score = 807 bits (2085), Expect = 0.0
Identities = 382/425 (89%), Positives = 403/425 (94%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD+
Sbjct: 1 MADKEAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDF 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIKI
Sbjct: 61 SIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHES
Sbjct: 181 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAED
Sbjct: 301 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-DP 419
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 420 EGQGS 424
>ref|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo sapiens].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
>ref|NP_001128728.1| histone-binding protein RBBP4 isoform c [Homo sapiens].
Length = 390
Score = 745 bits (1924), Expect = 0.0
Identities = 352/391 (90%), Positives = 372/391 (95%)
Frame = +1
Query: 412 MTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDA 591
MTHAL+WPSLT QWLP+VT+PEGKD+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDA
Sbjct: 1 MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60
Query: 592 SHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYT 771
SH DSEKGEFGGFGSV+GKIE EIKINHEGEVNRARYMPQNP IIATKTPSSDVLVFDYT
Sbjct: 61 SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT 120
Query: 772 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 951
KHP+KPDPSGECNPDLRLRGHQKEGYGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK
Sbjct: 121 KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 180
Query: 952 IVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE 1131
+VDAK IFTGH+AVVEDV+WHLLHESLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAE
Sbjct: 181 VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 240
Query: 1132 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 1311
VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILAS
Sbjct: 241 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 300
Query: 1312 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 1491
SGTDRRLNVWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE
Sbjct: 301 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 360
Query: 1492 DNIMQIWQMAENIYNDEESDVTTSDLEGQGS 1584
DNIMQ+WQMAENIYNDE+ + + D EGQGS
Sbjct: 361 DNIMQVWQMAENIYNDEDPEGSV-DPEGQGS 390
>ref|NP_113673.3| glutamate-rich WD repeat-containing protein 1 [Homo sapiens].
Length = 446
Score = 124 bits (311), Expect = 2e-28
Identities = 97/356 (27%), Positives = 160/356 (44%), Gaps = 26/356 (7%)
Frame = +1
Query: 499 WLVLGTHTSDEQ-NHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK-IN 672
+L GT Q N L++ R+H + + D E+ E K + E+ +
Sbjct: 88 YLCAGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVP 147
Query: 673 HEGEVNRAR--YMPQNPHIIATKTPSSDVLVF------DYTKHPAK-----PDPSGECNP 813
H G +NR R ++ + P + + V VF + P D + P
Sbjct: 148 HYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKP 206
Query: 814 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI--VDAKAIFTGHS 987
GH EG+ L W+ ++G LL+ + LW P +G VD + F GH+
Sbjct: 207 IFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWT----PTDGGSWHVDQRP-FVGHT 261
Query: 988 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDA--HTAEVNCLSFNPYS 1161
VED+ W ++F S + D + IWD R+ SK L A H +VN +S++
Sbjct: 262 RSVEDLQWSPTENTVFASCSADASIRIWDIRA-APSKACMLTTATAHDGDVNVISWSRRE 320
Query: 1162 EFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 1335
F+L+ G D + +WDLR K + TF+ H + V W P + + A+SG D ++
Sbjct: 321 PFLLSGGD-DGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQIT 379
Query: 1336 VWDLS-----KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 1488
WDL+ + G+ ++ D P +LLF+H G T ++ + W+P P ++ S +
Sbjct: 380 QWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGET-ELKELHWHPQCPGLLVSTA 434
>ref|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L isoform a [Homo sapiens].
Length = 589
Score = 94.4 bits (233), Expect = 3e-19
Identities = 75/251 (29%), Positives = 122/251 (48%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGH Y + ++ SG LLS S+D ++ WD+ + ++ GH+ V D
Sbjct: 338 LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S + D+ +W S + P + H A+V+C+ F+P S + LATG
Sbjct: 390 LDISP-YSLYFASGSHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 444
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 1362
S DKTV LW + + F H+ + + +SP N LAS+G D+RL +WDL+
Sbjct: 445 STDKTVRLWSAQQGN-SVRLFTGHRGPVLSLAFSP-NGKYLASAGEDQRLKLWDLAS--- 499
Query: 1363 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 1542
L GHT I+ +++P + +I S S DN +++W + N Y
Sbjct: 500 -----------GTLYKELRGHTDNITSLTFSP-DSGLIASASMDNSVRVWDI-RNTYCSA 546
Query: 1543 ESDVTTSDLEG 1575
+D ++S+L G
Sbjct: 547 PADGSSSELVG 557
>ref|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens].
Length = 323
Score = 91.7 bits (226), Expect = 2e-18
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 1/271 (0%)
Frame = +1
Query: 712 NPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL- 888
N H++ T + + ++D K P + H +E Y + W+ L+
Sbjct: 79 NEHVLITCSGDGSLQLWDTAK---------AAGPLQVYKEHAQEVYSVDWSQTRGEQLVV 129
Query: 889 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMI 1068
S S D TV LWD P GK + F GH +++ W F S + DQ L I
Sbjct: 130 SGSWDQTVKLWD----PTVGKSL---CTFRGHESIIYSTIWSPHIPGCFASASGDQTLRI 182
Query: 1069 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE 1248
WD ++ + ++ AH AE+ + Y+E +L TG+ D ++ WDLRN++ +
Sbjct: 183 WDVKA---AGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELL 239
Query: 1249 SHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHT 1428
H I +V +SP + ++LAS D + W+ SK P LL HT
Sbjct: 240 GHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSK-------------PDSLLETVEHHT 286
Query: 1429 AKISDFSWNPNEPWVICSVSEDNIMQIWQMA 1521
++ P + S D ++I+ A
Sbjct: 287 EFTCGLDFSLQSPTQVADCSWDETIKIYDPA 317
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = +1
Query: 1141 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETILASSG 1317
++++ +E +L T S D ++ LWD L ++ H E++ V WS E ++ S
Sbjct: 73 VTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGS 132
Query: 1318 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 1497
D+ + +WD +G+ L GH + I W+P+ P S S D
Sbjct: 133 WDQTVKLWD-PTVGKS-------------LCTFRGHESIIYSTIWSPHIPGCFASASGDQ 178
Query: 1498 IMQIWQM 1518
++IW +
Sbjct: 179 TLRIWDV 185
>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
Length = 800
Score = 87.4 bits (215), Expect = 3e-17
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L GH YG S++ + + +LLS+S+D TV LW + + GH+ V D
Sbjct: 539 LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSLQT-------FTCLVGYKGHNYPVWD 590
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S D+ +W T +P + H A+VNC F+P S ++ ATG
Sbjct: 591 TQFSP-YGYYFVSGGHDRVARLWATDHY---QPLRIFAGHLADVNCTRFHPNSNYV-ATG 645
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS---K 1353
SAD+TV LWD+ N + F HK I + +SP N LA+ TD R+ +WD+
Sbjct: 646 SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSP-NGRFLATGATDGRVLLWDIGHGLM 703
Query: 1354 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 1533
+GE + GHT + ++ + ++ S S DN +++W +
Sbjct: 704 VGELK-----------------GHTDTVCSLRFS-RDGEILASGSMDNTVRLWDAIKAFE 745
Query: 1534 NDEESDVTTS 1563
+ E D TT+
Sbjct: 746 DLETDDFTTA 755
>ref|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens].
Length = 423
Score = 80.9 bits (198), Expect = 3e-15
Identities = 52/174 (29%), Positives = 89/174 (51%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH + + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 249 PIVTLSGHMEAVSSVLWSD--AEEICSASWDHTIRVWDVESG-------SLKSTLTGNK- 298
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 299 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 1332
L +GS D V LWD R+ K L+ +H+D++ V W+ + +L S G D +L
Sbjct: 358 LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--DTGLLLSGGADNKL 409
Score = 58.9 bits (141), Expect = 1e-08
Identities = 67/254 (26%), Positives = 106/254 (41%), Gaps = 26/254 (10%)
Frame = +1
Query: 829 GHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
GH ++W +LS LLSAS D T+ LW+ N E V A GH+ V+
Sbjct: 138 GHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNV---ERNKVKALHCCRGHAGSVDS 194
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDT-----------------------RSNTTSKPSHLV 1113
+A + F S + D+ L IW T + T P +
Sbjct: 195 IAVDG-SGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTL 253
Query: 1114 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ-VHWSPH 1290
H V+ + ++ E + + S D T+ +WD+ + LK T +K +F + +SP
Sbjct: 254 SGHMEAVSSVLWSDAEE--ICSASWDHTIRVWDVESGSLK-STLTGNK--VFNCISYSPL 308
Query: 1291 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 1470
+ LAS TDR + +WD +DG L + HT ++ W+P
Sbjct: 309 CKR-LASGSTDRHIRLWD----------PRTKDGSLVSLSLTS-HTGWVTSVKWSPTHEQ 356
Query: 1471 VICSVSEDNIMQIW 1512
+ S S DNI+++W
Sbjct: 357 QLISGSLDNIVKLW 370
Score = 56.2 bits (134), Expect = 8e-08
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Frame = +1
Query: 976 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 1155
+GH V V W E S + D + +WD S + NC+S++P
Sbjct: 254 SGHMEAVSSVLWSDAEEIC--SASWDHTIRVWDVESGSLKSTL----TGNKVFNCISYSP 307
Query: 1156 YSEFILATGSADKTVALWDLRNLKLKLHTFE--SHKDEIFQVHWSPHNETILASSGTDRR 1329
+ LA+GS D+ + LWD R L + SH + V WSP +E L S D
Sbjct: 308 LCKR-LASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNI 366
Query: 1330 LNVWD-------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP 1458
+ +WD L + + + D L + GG K+ + ++P
Sbjct: 367 VKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYRYSP 416
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,036,407
Number of extensions: 1787977
Number of successful extensions: 8367
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 7650
Number of HSP's successfully gapped: 196
Length of query: 532
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,770,016
Effective search space: 6277256800
Effective search space used: 6277256800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-lik... 891 0.0
Alignment gi|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-lik... 883 0.0
Alignment gi|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-lik... 803 0.0
Alignment gi|XP_003127319.1| PREDICTED: glutamate-rich WD repeat-containi... 117 2e-26
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 94 2e-19
Alignment gi|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 re... 91 2e-18
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 89 7e-18
Alignment gi|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12... 83 5e-16
Alignment gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p... 77 3e-14
Alignment gi|XP_003354996.1| PREDICTED: protein TSSC1-like [Sus scrofa]. 77 3e-14
>ref|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-like isoform 1 [Sus scrofa].
Length = 425
Score = 891 bits (2302), Expect = 0.0
Identities = 424/425 (99%), Positives = 425/425 (100%)
Frame = +1
Query: 310 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 489
MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
Sbjct: 1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY 60
Query: 490 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 669
ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI
Sbjct: 61 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKI 120
Query: 670 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 849
NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
Sbjct: 121 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY 180
Query: 850 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 1029
GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240
Query: 1030 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1209
LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
Sbjct: 241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Query: 1210 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 1389
DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
Sbjct: 301 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 360
Query: 1390 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDL 1569
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+L
Sbjct: 361 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL 420
Query: 1570 EGQGS 1584
EGQGS
Sbjct: 421 EGQGS 425
>ref|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-like [Sus scrofa].
Length = 469
Score = 883 bits (2281), Expect = 0.0
Identities = 431/469 (91%), Positives = 436/469 (92%), Gaps = 1/469 (0%)
Frame = +1
Query: 181 GAEASRAGSV*RAW-ERQERLPLGCSWLARGVRGGGEGQTTRRKMASKEMFEDTVEERVI 357
GAEAS G W ER + L R G G + + +FEDTVEERVI
Sbjct: 9 GAEASPGGG----WRERADGFLLHVD----SSRRVGRGASLHTARHLRTVFEDTVEERVI 60
Query: 358 NEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQN 537
NEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQN
Sbjct: 61 NEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQN 120
Query: 538 HLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP 717
HLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP
Sbjct: 121 HLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP 180
Query: 718 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 897
HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS
Sbjct: 181 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 240
Query: 898 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 1077
DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT
Sbjct: 241 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 300
Query: 1078 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 1257
RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK
Sbjct: 301 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 360
Query: 1258 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 1437
DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI
Sbjct: 361 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 420
Query: 1438 SDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSDLEGQGS 1584
SDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTS+LEGQGS
Sbjct: 421 SDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQGS 469
>ref|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-like [Sus scrofa].
Length = 425
Score = 803 bits (2073), Expect = 0.0
Identities = 382/426 (89%), Positives = 403/426 (94%), Gaps = 1/426 (0%)
Frame = +1
Query: 310 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 486
MA KE F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 487 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 666
+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120
Query: 667 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 846
INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 1026
YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1027 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1206
SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 1207 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 1386
WDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRLNVWDLSKIGEEQS EDAE
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 1387 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSD 1566
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ+WQMAENIYNDE+ + + D
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSV-D 419
Query: 1567 LEGQGS 1584
EGQGS
Sbjct: 420 PEGQGS 425
>ref|XP_003127319.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Sus
scrofa].
Length = 445
Score = 117 bits (292), Expect = 2e-26
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 11/244 (4%)
Frame = +1
Query: 790 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD-INAGPKEGKIVDAK 966
D P GH EG+ L W+ + G LL+ + LW ++G VD +
Sbjct: 198 DEQARVKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDSGSWH---VDQR 254
Query: 967 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD--AHTAEVNC 1140
F GH+ VED+ W +++F S + D + IWD R+ SK L AH +VN
Sbjct: 255 P-FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRA-APSKACMLTTPAAHNGDVNV 312
Query: 1141 LSFNPYSEFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNETILASS 1314
+S++ F+L+ G D + +WDLR K + TF+ H + V W P + + A+S
Sbjct: 313 ISWSRQEPFLLSGGD-DGALKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAAS 371
Query: 1315 GTDRRLNVWDLSKIGEEQSAEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWVI 1476
G D ++ WDL+ + + A D E P +LLF+H G T + + W+P P V+
Sbjct: 372 GADNQITQWDLA-VERDPEAGDTETDPGLVGLPQQLLFVHQGET-DLKELHWHPQCPGVL 429
Query: 1477 CSVS 1488
S +
Sbjct: 430 VSTA 433
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 94.4 bits (233), Expect = 2e-19
Identities = 75/251 (29%), Positives = 122/251 (48%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
LRGH Y + ++ SG LLS S+D ++ WD+ + ++ GH+ V D
Sbjct: 338 LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
V + F S + D+ +W S + P + H A+V+C+ F+P S + LATG
Sbjct: 390 VDISP-YSLYFASGSHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 444
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 1362
S DKTV LW + + F H+ + + +SP N LAS+G D+RL +WDL+
Sbjct: 445 STDKTVRLWSAQQGN-SVRLFTGHRGPVLSLAFSP-NGKYLASAGEDQRLKLWDLAS--- 499
Query: 1363 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 1542
L GHT I+ +++P+ +I S S DN +++W + N +
Sbjct: 500 -----------GTLFKELRGHTDNITSLTFSPDSS-LIASASMDNSVRVWDI-RNTHCSA 546
Query: 1543 ESDVTTSDLEG 1575
+D ++S+L G
Sbjct: 547 PTDGSSSELVG 557
>ref|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 receptor-like [Sus scrofa].
Length = 335
Score = 90.9 bits (224), Expect = 2e-18
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 1/189 (0%)
Frame = +1
Query: 790 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAK 966
D +G P + H +E Y + W+ L+ S S D TV LWD G +
Sbjct: 96 DTAGAAGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGR-------SL 148
Query: 967 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLS 1146
F GH +++ W F S + DQ L IWD + T+ +V AH AE+
Sbjct: 149 CTFKGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVK---TTGVRIVVPAHQAEILSCD 205
Query: 1147 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 1326
+ Y+E +L TG+ D ++ WDLRN++ + H I +V +SP ++LAS D
Sbjct: 206 WCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFYASVLASCSYDF 265
Query: 1327 RLNVWDLSK 1353
+ W+ SK
Sbjct: 266 TVRFWNFSK 274
Score = 72.4 bits (176), Expect = 7e-13
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 3/229 (1%)
Frame = +1
Query: 847 YGLSWNSNLSGHLLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLL 1020
+ ++W+ N L++ S D ++ LWD AGP + ++ H+ V V W
Sbjct: 71 FDVTWSENNEHVLVTCSGDGSLQLWDTAGAAGPLQ--------VYKEHTQEVYSVDWSQT 122
Query: 1021 H-ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 1197
E L S + DQ + +WD T + H + + ++P+ A+ S D+T
Sbjct: 123 RGEQLVVSGSWDQTVKLWDP---TVGRSLCTFKGHESIIYSTIWSPHIPGCFASASGDQT 179
Query: 1198 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 1377
+ +WD++ +++ +H+ EI W +NE +L + D L WDL + +
Sbjct: 180 LRIWDVKTTGVRI-VVPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVF-- 236
Query: 1378 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 1524
ELL GHT I ++P V+ S S D ++ W ++
Sbjct: 237 -------ELL----GHTYAIRRVKFSPFYASVLASCSYDFTVRFWNFSK 274
Score = 69.7 bits (169), Expect = 4e-12
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDH-------TVCLWDIN-AGPKEGKIVD-AKAIF 975
LR + GY ++ L G L A+ H T+ + D N +G + + D A+F
Sbjct: 12 LRVPGRHGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLILDHNESGLRIFRSFDWTDALF 71
Query: 976 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 1155
DV W +E + + + D L +WDT + P + HT EV + ++
Sbjct: 72 --------DVTWSENNEHVLVTCSGDGSLQLWDTAG--AAGPLQVYKEHTQEVYSVDWSQ 121
Query: 1156 Y-SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 1332
E ++ +GS D+TV LWD + L TF+ H+ I+ WSPH AS+ D+ L
Sbjct: 122 TRGEQLVVSGSWDQTVKLWD-PTVGRSLCTFKGHESIIYSTIWSPHIPGCFASASGDQTL 180
Query: 1333 NVWDLSKIG 1359
+WD+ G
Sbjct: 181 RIWDVKTTG 189
Score = 64.7 bits (156), Expect = 1e-10
Identities = 40/145 (27%), Positives = 65/145 (44%)
Frame = +1
Query: 826 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 1005
+GH+ Y W+ ++ G SAS D T+ +WD+ K + + H A +
Sbjct: 152 KGHESIIYSTIWSPHIPGCFASASGDQTLRIWDV-------KTTGVRIVVPAHQAEILSC 204
Query: 1006 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 1185
W +E+L + A D L WD R+ +P + HT + + F+P+ +LA+ S
Sbjct: 205 DWCKYNENLLVTGAVDCSLRGWDLRN--VRQPVFELLGHTYAIRRVKFSPFYASVLASCS 262
Query: 1186 ADKTVALWDLRNLKLKLHTFESHKD 1260
D TV W+ L T E H +
Sbjct: 263 YDFTVRFWNFSKPNPLLETVEHHTE 287
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 89.0 bits (219), Expect = 7e-18
Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 1002
L GH YG S++ + + +LLS+S+D TV LW + + GH+ V D
Sbjct: 401 LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSLQT-------FTCLVGYKGHNYPVWD 452
Query: 1003 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 1182
+ + F S D+ +W T +P + H A+VNC F+P S ++ ATG
Sbjct: 453 TQFSP-YGYYFVSGGHDRVARLWATDHY---QPLRIFAGHLADVNCTRFHPNSNYV-ATG 507
Query: 1183 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS---K 1353
SAD+TV LWD+ N + F HK I + +SP N LA+ TD R+ +WD+
Sbjct: 508 SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSP-NGRFLATGATDGRVLLWDIGHGLM 565
Query: 1354 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 1533
+GE + GHT + ++ + ++ S S DN +++W +
Sbjct: 566 VGELK-----------------GHTDTVCSLRFS-RDGEILASGSMDNTVRLWDAVKAFE 607
Query: 1534 NDEESDVTT 1560
+ E D+TT
Sbjct: 608 DLETDDITT 616
>ref|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12-like [Sus scrofa].
Length = 220
Score = 82.8 bits (203), Expect = 5e-16
Identities = 53/174 (30%), Positives = 90/174 (51%)
Frame = +1
Query: 811 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 990
P + L GH++ + W+ + + SAS DHT+ +WD+ +G K+ TG+
Sbjct: 46 PIVTLSGHKEAISSVLWSD--AEEICSASWDHTIGVWDVESG-------SLKSTLTGNK- 95
Query: 991 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 1170
V +++ L + L S + D+ + +WD R+ S S + +HT V + ++P E
Sbjct: 96 VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 154
Query: 1171 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 1332
L +GS D V LWD R+ K L+ +H+D++ V W+ N +L S G D +L
Sbjct: 155 LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT--NTGLLLSGGADNKL 206
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Frame = +1
Query: 976 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 1155
+GH + V W E S + D + +WD S + NC+S++P
Sbjct: 51 SGHKEAISSVLWSDAEEIC--SASWDHTIGVWDVESGSLKSTL----TGNKVFNCISYSP 104
Query: 1156 YSEFILATGSADKTVALWDLRNLKLKLHTFE--SHKDEIFQVHWSPHNETILASSGTDRR 1329
+ LA+GS D+ + LWD R L + SH + V WSP +E L S D
Sbjct: 105 LCKR-LASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNI 163
Query: 1330 LNVWD-------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP 1458
+ +WD L + + + D L + GG K+ + ++P
Sbjct: 164 VKLWDTRSCKAPLYDLAAHEDKVLSVDWTNTGLLLSGGADNKLYSYRYSP 213
>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
scrofa].
Length = 529
Score = 77.0 bits (188), Expect = 3e-14
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +1
Query: 832 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 1011
H+ + L WN ++LSA D T +WD + G +AK F HSA DV W
Sbjct: 280 HKGPIFALKWNKK-GNYILSAGVDKTTIIWDAHTG-------EAKQQFPFHSAPALDVDW 331
Query: 1012 HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 1191
+ + F S + D + + + +P HT EVN + ++P S +LA+ S D
Sbjct: 332 Q--NNTTFASCSTDMCIHVCRLGCD---RPVKTFQGHTNEVNAIKWDP-SGMLLASCSDD 385
Query: 1192 KTVALWDLRNLKLKLHTFESHKDEIFQVHWS--------PHNETILASSGTDRRLNVWDL 1347
T+ +W ++ +H ++H EI+ + WS P++ +LAS+ D + +WD+
Sbjct: 386 MTLKIWSMKQ-DTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDV 444
Query: 1348 SK 1353
+
Sbjct: 445 ER 446
Score = 68.2 bits (165), Expect = 1e-11
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 7/242 (2%)
Frame = +1
Query: 823 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAV- 993
LRGH+ E + +WN +S L S S D T +W++N G ++V I G V
Sbjct: 180 LRGHESEVFICAWNP-VSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVP 238
Query: 994 ----VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 1161
V + W+ +L + + D IW N S + H + L +N
Sbjct: 239 SNKDVTSLDWN-SDGTLLATGSYDGFARIWTEDGNLAS----TLGQHKGPIFALKWNKKG 293
Query: 1162 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 1341
+IL+ G DKT +WD + K F H V W N T AS TD ++V
Sbjct: 294 NYILSAG-VDKTTIIWDAHTGEAK-QQFPFHSAPALDVDW--QNNTTFASCSTDMCIHV- 348
Query: 1342 DLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 1521
++G ++ + + GHT +++ W+P+ ++ S S+D ++IW M
Sbjct: 349 --CRLGCDRPVKTFQ-----------GHTNEVNAIKWDPS-GMLLASCSDDMTLKIWSMK 394
Query: 1522 EN 1527
++
Sbjct: 395 QD 396
>ref|XP_003354996.1| PREDICTED: protein TSSC1-like [Sus scrofa].
Length = 387
Score = 77.0 bits (188), Expect = 3e-14
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 35/317 (11%)
Frame = +1
Query: 649 IECEIKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD 816
I + ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 55 INKNVLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPE 114
Query: 817 -----------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 957
L H G ++W G + + D+ + LWD+ + +
Sbjct: 115 DAASPAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDLQESSSQALLA 174
Query: 958 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 1137
+ ++ W H + A+D + WDTR T S+ + +AH V
Sbjct: 175 SSASLEGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVR 232
Query: 1138 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 1317
L FNP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++
Sbjct: 233 DLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTAS 292
Query: 1318 TDRRLNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISD 1443
+D R+ + +++ I EE+ E+ PP+ ++ + H +
Sbjct: 293 SDSRVILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYA 352
Query: 1444 FSWNPNEPWVICSVSED 1494
W +PW+ S+S D
Sbjct: 353 VEWAAADPWLFASLSYD 369
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,782,048
Number of extensions: 1128686
Number of successful extensions: 5187
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 4765
Number of HSP's successfully gapped: 119
Length of query: 532
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 428
Effective length of database: 8,754,644
Effective search space: 3746987632
Effective search space used: 3746987632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007562
(1598 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 541 e-151
Sscrofa_Chr06 74 3e-10
>Sscrofa_ChrX
|| Length = 144288218
Score = 541 bits (273), Expect = e-151
Identities = 308/325 (94%)
Strand = Plus / Minus
Query: 1 cttttcccagggcggatgcgcctgcgctcagctgcctgggcgggctgggaggcgcgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14312579 cttttcccagggcggatgcgcctgcgctcagctgcctgggcgggctgggaggcgcgggtt 14312520
Query: 61 gaaaagtctcgttccaagtttgnnnnnnnnnnnnnnnncgtctcagacctcggtacccgc 120
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14312519 gaaaagtctcgttccaagtttggagagagagagaagagcgtctcagacctcggtacccgc 14312460
Query: 121 aatcggggaggaggtaggagagaaggacgcggcgtctggggagcacccaggctgaaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14312459 aatcggggaggaggtaggagagaaggacgcggcgtctggggagcacccaggctgaaagac 14312400
Query: 181 ggagctgaggcttcgagagctggaagtgtgtgacgcgcctgggaaaggcaggagcgccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14312399 ggagctgaggcttcgagagctggaagtgtgtgacgcgcctgggaaaggcaggagcgccta 14312340
Query: 241 ccgttgggctgctcttggctagcgaggggagtccgaggcggcggcgaggggcaaacgacc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14312339 ctgttgggctgctcttggctagcgaggggagtccgaggcggcggcgaggggcaaacgacc 14312280
Query: 301 cgacgcaagatggcgagtaaagaga 325
|||||||||||||||||||||||||
Sbjct: 14312279 cgacgcaagatggcgagtaaagaga 14312255
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 616 gaatttggtggctttggttctgtaacaggaaaaattgaatgtgaaattaaaattaaccac 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14302173 gaatttggtggctttggttctgtaacaggaaaaattgaatgtgaaattaaaattaaccac 14302114
Query: 676 gaaggagaagtaaaccgtgctcgatacatgccgcagaatcctcacatcattgctacaaaa 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14302113 gaaggagaagtaaaccgtgctcgatacatgccgcagaatcctcacatcattgctacaaaa 14302054
Query: 736 acaccgtcttctgacgtgctggtttttgactatacaaagcaccctgctaaaccag 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14302053 acaccgtcttctgacgtgctggtttttgactatacaaagcaccctgctaaaccag 14301999
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 907 actgtctgtctgtgggatatcaatgcaggaccaaaggaaggcaaaattgtggatgctaaa 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296000 actgtctgtctgtgggatatcaatgcaggaccaaaggaaggcaaaattgtggatgctaaa 14295941
Query: 967 gcgatttttactggccactcggctgttgtagaggatgtggcctggcacctgctgcatgag 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295940 gcgatttttactggccactcggctgttgtagaggatgtggcctggcacctgctgcatgag 14295881
Query: 1027 tcattgtttggatctgttgctgatgatcagaaacttatgat 1067
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295880 tcattgtttggatctgttgctgatgatcagaaacttatgat 14295840
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 471 accggaaggaaaggattatgcccttcattggctagtgctggggactcacacatctgatga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14306541 accggaaggaaaggattatgcccttcattggctagtgctggggactcacacatctgatga 14306482
Query: 531 gcagaatcatctcgtggttgctcgggtccatattccgaatgatgatgcacagtttgatgc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14306481 gcagaatcatctcgtggttgctcgggtccatattccgaatgatgatgcacagtttgatgc 14306422
Query: 591 ttcccactgtgacagtgagaagggtg 616
||||||||||||||||||||||||||
Sbjct: 14306421 ttcccactgtgacagtgagaagggtg 14306396
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 326 tgtttgaagatactgtggaggagcgtgtcatcaatgaagaatataaaatctggaagaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14311425 tgtttgaagatactgtggaggagcgtgtcatcaatgaagaatataaaatctggaagaaga 14311366
Query: 386 atacaccgtttctgtatgacctggttatgacccatgctcttcagtggccgagtcttaccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14311365 atacaccgtttctgtatgacctggttatgacccatgctcttcagtggccgagtcttaccg 14311306
Query: 446 ttcagtggcttcctgaagtgactaa 470
|||||||||||||||||||||||||
Sbjct: 14311305 ttcagtggcttcctgaagtgactaa 14311281
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1068 atgggacaccaggtccaataccacctccaagccgagccacctggtggatgcacacaccgc 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295079 atgggacaccaggtccaataccacctccaagccgagccacctggtggatgcacacaccgc 14295020
Query: 1128 cgaggtcaattgcctgtcgttcaatccctacagcgagttcattctcgccactggctctgc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295019 cgaggtcaattgcctgtcgttcaatccctacagcgagttcattctcgccactggctctgc 14294960
Query: 1188 ggataag 1194
|||||||
Sbjct: 14294959 ggataag 14294953
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 789 agacccaagtggagaatgtaatcctgatcttcggctaagaggccaccaaaaggaaggcta 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14300765 agacccaagtggagaatgtaatcctgatcttcggctaagaggccaccaaaaggaaggcta 14300706
Query: 849 tggtctttcctggaattcgaacttgagtggacatctcctaagtgcatctgacgaccat 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14300705 tggtctttcctggaattcgaacttgagtggacatctcctaagtgcatctgacgaccat 14300648
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1407 gttcattcatggaggacacactgccaagatatcagattttagctggaaccccaatgagcc 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14290106 gttcattcatggaggacacactgccaagatatcagattttagctggaaccccaatgagcc 14290047
Query: 1467 ttgggtcatttgctcagtgtcggaggataacatcatgcagatatggcaaatgg 1519
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14290046 ttgggtcatttgctcagtgtcggaggataacatcatgcagatatggcaaatgg 14289994
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1193 agactgtagctttatgggacctgcgtaatttaaaattgaaactccataccttcgaatctc 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14294842 agactgtagctttatgggacctgcgtaatttaaaattgaaactccataccttcgaatctc 14294783
Query: 1253 ataaagatgaaattttccaggt 1274
||||||||||||||||||||||
Sbjct: 14294782 ataaagatgaaattttccaggt 14294761
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1270 caggtccactggtctccacataatgaaactattctggcttcaagtggtactgatcgccgt 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14294198 caggtccactggtctccacataatgaaactattctggcttcaagtggtactgatcgccgt 14294139
Query: 1330 ctgaacgtgtgggatttaag 1349
||||||||||||||||||||
Sbjct: 14294138 ctgaacgtgtgggatttaag 14294119
Score = 137 bits (69), Expect = 2e-29
Identities = 78/81 (96%)
Strand = Plus / Minus
Query: 1518 ggctgaaaatatttacaatgatgaagagtcagatgtcacaacatccgacctggaggggca 1577
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 14289275 ggctgaaaatatttacaatgatgaagagtcagatgtcacaacatcggaactggaggggca 14289216
Query: 1578 aggatcttaaaccccaagtac 1598
|||||||||||||| ||||||
Sbjct: 14289215 aggatcttaaacccaaagtac 14289195
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1348 agcaaaattggagaagaacagtcggcagaagacgcagaagatgggcctccagaactcctg 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14292829 agcaaaattggagaagaacagtcggcagaagacgcagaagatgggcctccagaactcctg 14292770
>Sscrofa_Chr06
|| Length = 157765593
Score = 73.8 bits (37), Expect = 3e-10
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 1411 attcatggaggacacactgccaagatatcagattttagctggaaccccaatgagccttgg 1470
|||||||| || ||||||||||||||||| ||||| |||||| |||||||| ||||||
Sbjct: 83028860 attcatggtggtcacactgccaagatatctgatttctcctggaatcccaatgaaccttgg 83028919
Query: 1471 gtcatttgctcagtgtcggaggataacatcatgcagatatggcaaatgg 1519
|| ||||| || || || || || || ||||||||| | ||||||||||
Sbjct: 83028920 gtgatttgttctgtatcagaagacaatatcatgcaggtgtggcaaatgg 83028968
Score = 65.9 bits (33), Expect = 6e-08
Identities = 126/157 (80%)
Strand = Plus / Plus
Query: 911 tctgtctgtgggatatcaatgcaggaccaaaggaaggcaaaattgtggatgctaaagcga 970
|||| |||||||| |||| ||||| ||||| ||||| ||| | |||||||| || | |
Sbjct: 83026580 tctgcctgtgggacatcagtgcagttccaaaagaaggaaaagtggtggatgcgaagacca 83026639
Query: 971 tttttactggccactcggctgttgtagaggatgtggcctggcacctgctgcatgagtcat 1030
| ||||| || || |||| || ||||| ||||| ||||||| ||||| || || ||
Sbjct: 83026640 tctttacagggcatacggcagtagtagaagatgtctcctggcatctgctccacgaatctc 83026699
Query: 1031 tgtttggatctgttgctgatgatcagaaacttatgat 1067
||||||| || ||||||||||||||||||||||||||
Sbjct: 83026700 tgtttgggtcagttgctgatgatcagaaacttatgat 83026736
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,927,857
Number of extensions: 260
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 15
Length of query: 1598
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1576
Effective length of database: 2,808,408,574
Effective search space: 4426051912624
Effective search space used: 4426051912624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)