Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095494.1| CD1a molecule [Bos taurus]. 466 e-131
Alignment gi|NP_001068850.1| CD1A antigen [Bos taurus]. 456 e-128
Alignment gi|XP_001249797.1| PREDICTED: CD1A antigen-like [Bos taurus]. 442 e-124
Alignment gi|NP_001039486.1| CD1b molecule [Bos taurus]. 360 2e-99
Alignment gi|NP_001029566.1| T-cell surface glycoprotein CD1e, membrane-a... 348 7e-96
Alignment gi|XP_002685974.1| PREDICTED: similar to CD1b3 [Bos taurus]. 337 2e-92
Alignment gi|XP_001249674.1| PREDICTED: similar to CD1b3 [Bos taurus]. 337 2e-92
Alignment gi|XP_001249700.1| PREDICTED: similar to CD1b3 [Bos taurus]. 337 2e-92
Alignment gi|XP_001253261.1| PREDICTED: CD1b molecule-like, partial [Bos ... 325 6e-89
Alignment gi|NP_001192310.1| CD1D antigen, d polypeptide [Bos taurus]. 322 9e-88
>ref|NP_001095494.1| CD1a molecule [Bos taurus].
Length = 333
Score = 466 bits (1199), Expect = e-131
Identities = 218/313 (69%), Positives = 251/313 (80%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
P GDSE FQEPI+F+II ISSFY++ + + + SAWL ELQTH + SD VIY +PWSK
Sbjct: 14 PCGDSENDFQEPITFKIIRISSFYSQFFAQNLGSAWLDELQTHAWDNNSDRVIYLRPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS E+LM+ E++L FF+R Q NHASQW+L+YPF++QIAGGC+++ + SVGFVR
Sbjct: 74 GNFSNEELMDVENVLHTFFIRLGQVLHNHASQWQLQYPFELQIAGGCEMHIRDASVGFVR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
I YQGSDF SFQK+ W+PSP+GG AQ VC LFNLY+GT EIIHKLLSDTCPRF+L LLD
Sbjct: 134 IGYQGSDFLSFQKDVWVPSPEGGISAQFVCTLFNLYRGTQEIIHKLLSDTCPRFLLSLLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA LQRQVRPEAWLS GP+P PG LMLVCHVSGFYPKPIWVMWMRGEQEQ GTQ+ D+
Sbjct: 194 AGKAYLQRQVRPEAWLSPGPSPGPGQLMLVCHVSGFYPKPIWVMWMRGEQEQQGTQRSDV 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXX 1390
LPNADGTWYLRV+LDV A EASGLSCRV+HSSLGGQDIILYW+ HSS W
Sbjct: 254 LPNADGTWYLRVSLDVEASEASGLSCRVRHSSLGGQDIILYWDHHSSTAWIILAMIVPLV 313
Query: 1391 XXTGLAFWHRKHW 1429
GLAFW RK W
Sbjct: 314 LLAGLAFWLRKSW 326
>ref|NP_001068850.1| CD1A antigen [Bos taurus].
Length = 346
Score = 456 bits (1173), Expect = e-128
Identities = 218/332 (65%), Positives = 256/332 (77%), Gaps = 7/332 (2%)
Frame = +2
Query: 494 GGDSE-------EGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIY 652
GGD+E EGFQEPISF++I + SF+N SW + + S WLGELQTH + S IY
Sbjct: 15 GGDNEQNKNSVPEGFQEPISFEVICVLSFHNSSWVQSLGSGWLGELQTHGWKSNSGTFIY 74
Query: 653 RQPWSKGNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGET 832
PWSKGNFS E+LME ++ L FVRF+QAF++HA +W+ EYPF+VQIA GC+L+ GE
Sbjct: 75 LWPWSKGNFSNEELMELQNYLHTSFVRFLQAFYSHARKWQFEYPFEVQIAKGCELHAGEV 134
Query: 833 SVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRF 1012
VGF+RIAYQGSDF SFQ SW+ SP+GG RAQ++ +LFNL++G EIIHKLLSDTCPRF
Sbjct: 135 PVGFMRIAYQGSDFLSFQNKSWVSSPEGGKRAQVLRRLFNLFRGGQEIIHKLLSDTCPRF 194
Query: 1013 VLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPG 1192
+LGLLDAGKA LQRQVRPEAWLS GP+P PG L LVCH+SGFYPKPIWVMWMRGEQEQ G
Sbjct: 195 LLGLLDAGKAYLQRQVRPEAWLSLGPSPGPGQLTLVCHISGFYPKPIWVMWMRGEQEQQG 254
Query: 1193 TQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXX 1372
TQ+ D+LPN DGT YLRV+LDV A EASGLSCRV+HSSLGGQDIILYW+ HSSVGW
Sbjct: 255 TQRSDVLPNPDGTSYLRVSLDVEASEASGLSCRVRHSSLGGQDIILYWDHHSSVGWIALA 314
Query: 1373 XXXXXXXXTGLAFWHRKHWKHCDPSSALHRLE 1468
GLAFW KHW H + S++ LE
Sbjct: 315 VIVTLVLMAGLAFWLWKHWTHRESPSSVLPLE 346
>ref|XP_001249797.1| PREDICTED: CD1A antigen-like [Bos taurus].
Length = 346
Score = 442 bits (1136), Expect = e-124
Identities = 214/332 (64%), Positives = 252/332 (75%), Gaps = 7/332 (2%)
Frame = +2
Query: 494 GGDSE-------EGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIY 652
GGD+E EGFQEPISF++I + SF+N SW + + S WLGELQTH + S IY
Sbjct: 15 GGDNEQNKNSVPEGFQEPISFKVICVLSFHNSSWVQSLGSGWLGELQTHGWKSNSGTFIY 74
Query: 653 RQPWSKGNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGET 832
PWSKGNFS E+L E ++ L FVRFVQAF++HA + + EY F+VQIA GC+L+ GE
Sbjct: 75 LWPWSKGNFSNEELKELQNYLHTNFVRFVQAFYSHARKCQFEYRFEVQIAKGCELHAGEV 134
Query: 833 SVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRF 1012
VGF+RIAYQGSDF SFQ SW+ SP+GG RAQ++ +LFNL++G EIIHKLLSDTCPRF
Sbjct: 135 PVGFMRIAYQGSDFLSFQNKSWVSSPEGGKRAQVLRRLFNLFRGAQEIIHKLLSDTCPRF 194
Query: 1013 VLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPG 1192
+LGLLDAGKA LQRQVRPEAWLS GP+P PG L LVCH+SGFYPKPIWVMWMRGEQEQ G
Sbjct: 195 LLGLLDAGKAYLQRQVRPEAWLSLGPSPGPGQLTLVCHISGFYPKPIWVMWMRGEQEQQG 254
Query: 1193 TQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXX 1372
TQ+ D+LPN+DGT YLRV+LDV A EA GLSCRV+HSSLGGQDIILYW+ HSSV W
Sbjct: 255 TQRNDVLPNSDGTSYLRVSLDVEAIEAPGLSCRVRHSSLGGQDIILYWDHHSSVSWIALA 314
Query: 1373 XXXXXXXXTGLAFWHRKHWKHCDPSSALHRLE 1468
GLAFW KHW H + S++ LE
Sbjct: 315 VIVTLVLMAGLAFWLWKHWTHHESPSSILPLE 346
>ref|NP_001039486.1| CD1b molecule [Bos taurus].
Length = 333
Score = 360 bits (925), Expect = 2e-99
Identities = 167/289 (57%), Positives = 215/289 (74%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGD+E+ FQ P SF ++ IS+F N +W + S WL +LQ H E S I+ +PWSK
Sbjct: 14 PGGDNEDVFQGPTSFHLMQISTFVNSTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS +++ E + R +F+ F + + ++++LEYPF +Q+ GC+L+ GE +R
Sbjct: 74 GNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S Q +S +P+P G+R Q C L YQG +II +LLS+TCPR++LG+LD
Sbjct: 134 GALGGLDFVSIQNHSCVPAPDSGSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA+LQRQV+PEAWLSSGP P PG L+LVCHVSGFYPKP+ VMWMRGEQEQPGTQQGD+
Sbjct: 194 AGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDL 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVG 1357
+PNAD TWYLRVTL+VAAGEA+GL+CRVKHSSLG QDIILYW +S+G
Sbjct: 254 MPNADWTWYLRVTLNVAAGEAAGLNCRVKHSSLGDQDIILYWGHPTSIG 302
>ref|NP_001029566.1| T-cell surface glycoprotein CD1e, membrane-associated [Bos taurus].
Length = 392
Score = 348 bits (894), Expect = 7e-96
Identities = 159/277 (57%), Positives = 216/277 (77%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E SF++I ISSF N SW + S WLG+LQTH + + + +PWS+GNFS+E+L
Sbjct: 36 EESPSFRLIQISSFANHSWTKTQGSGWLGDLQTHGWDSVLASIRFLRPWSQGNFSKEELK 95
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ L+++ F + +ASQ++ EYPF++Q++ GC ++ G+ F+ AYQG DF
Sbjct: 96 NIQAFLQLYLHSFPREVQAYASQFQFEYPFELQVSFGCLIHSGKALETFLNGAYQGLDFL 155
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ+NSW SP+ G+RA+ VCK+ N Y+ EI+ +LLSDTCPRF+ G+L+AGKA+L++Q
Sbjct: 156 SFQENSWKSSPEAGSRAENVCKVLNHYRVIKEIVQRLLSDTCPRFLAGVLEAGKAELEKQ 215
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAW+S GP+P PG L+LVCHVSGF+PKPIWVMWMRG+Q+ PGT++GD+LPNADGTWY
Sbjct: 216 VKPEAWVSKGPSPGPGRLLLVCHVSGFHPKPIWVMWMRGKQKHPGTRRGDVLPNADGTWY 275
Query: 1238 LRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHS 1348
LRVTLDVAAGEA+GLSC+VKHSSLGGQDII++W +S
Sbjct: 276 LRVTLDVAAGEAAGLSCQVKHSSLGGQDIIIHWGGYS 312
>ref|XP_002685974.1| PREDICTED: similar to CD1b3 [Bos taurus].
Length = 332
Score = 337 bits (864), Expect = 2e-92
Identities = 163/316 (51%), Positives = 213/316 (67%), Gaps = 1/316 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGD+ + FQ P SF ++ IS+F N + + S WL +LQ H E I+ +PWSK
Sbjct: 14 PGGDNADVFQGPTSFHLMQISTFVNNTCAQNQGSGWLDDLQIHGLESDLGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS +++ E + + R + + F + ++++LEYPF +Q+ GC+L+ GE +R
Sbjct: 74 GNFSDDEVTELQDLFRAYLIGFTCGMQDRVNEFQLEYPFVIQLTAGCELHSGEAIGSSLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S Q +S +P+P G R Q C L + I +LLS+TCP+++LG+LD
Sbjct: 134 GALGGLDFVSIQNHSCVPAPDSGFRGQKFCALMT-QNAVISYIERLLSETCPQYLLGVLD 192
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA+LQRQV+PEAWLSSGP P PG L+LVCHVSGFYPKP+ VMWMRGEQEQPGTQQGDI
Sbjct: 193 AGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDI 252
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW-XXXXXXXXX 1387
+PNAD TWYLRVTL+VAAGEA+GL+CRVKHSSLG QDIILYW +S+G
Sbjct: 253 MPNADWTWYLRVTLNVAAGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSL 312
Query: 1388 XXXTGLAFWHRKHWKH 1435
LA W ++W +
Sbjct: 313 ILLICLALWFWRYWSY 328
>ref|XP_001249674.1| PREDICTED: similar to CD1b3 [Bos taurus].
Length = 332
Score = 337 bits (864), Expect = 2e-92
Identities = 163/316 (51%), Positives = 213/316 (67%), Gaps = 1/316 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGD+ + FQ P SF ++ IS+F N + + S WL +LQ H E I+ +PWSK
Sbjct: 14 PGGDNADVFQGPTSFHLMQISTFVNNTCAQNQGSGWLDDLQIHGLESDLGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS +++ E + + R + + F + ++++LEYPF +Q+ GC+L+ GE +R
Sbjct: 74 GNFSDDEVTELQDLFRAYLIGFTCGMQDRVNEFQLEYPFVIQLTAGCELHSGEAIGSSLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S Q +S +P+P G R Q C L + I +LLS+TCP+++LG+LD
Sbjct: 134 GALGGLDFVSIQNHSCVPAPDSGFRGQKFCALMT-QNAVISYIERLLSETCPQYLLGVLD 192
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA+LQRQV+PEAWLSSGP P PG L+LVCHVSGFYPKP+ VMWMRGEQEQPGTQQGDI
Sbjct: 193 AGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDI 252
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW-XXXXXXXXX 1387
+PNAD TWYLRVTL+VAAGEA+GL+CRVKHSSLG QDIILYW +S+G
Sbjct: 253 MPNADWTWYLRVTLNVAAGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSL 312
Query: 1388 XXXTGLAFWHRKHWKH 1435
LA W ++W +
Sbjct: 313 ILLICLALWFWRYWSY 328
>ref|XP_001249700.1| PREDICTED: similar to CD1b3 [Bos taurus].
Length = 332
Score = 337 bits (864), Expect = 2e-92
Identities = 163/316 (51%), Positives = 213/316 (67%), Gaps = 1/316 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGD+ + FQ P SF ++ IS+F N + + S WL +LQ H E I+ +PWSK
Sbjct: 14 PGGDNADVFQGPTSFHLMQISTFVNNTCAQNQGSGWLDDLQIHGLESDLGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS +++ E + + R + + F + ++++LEYPF +Q+ GC+L+ GE +R
Sbjct: 74 GNFSDDEVTELQDLFRAYLIGFTCGMQDRVNEFQLEYPFVIQLTAGCELHSGEAIGSSLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S Q +S +P+P G R Q C L + I +LLS+TCP+++LG+LD
Sbjct: 134 GALGGLDFVSIQNHSCVPAPDSGFRGQKFCALMT-QNAVISYIERLLSETCPQYLLGVLD 192
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA+LQRQV+PEAWLSSGP P PG L+LVCHVSGFYPKP+ VMWMRGEQEQPGTQQGDI
Sbjct: 193 AGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDI 252
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW-XXXXXXXXX 1387
+PNAD TWYLRVTL+VAAGEA+GL+CRVKHSSLG QDIILYW +S+G
Sbjct: 253 MPNADWTWYLRVTLNVAAGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSL 312
Query: 1388 XXXTGLAFWHRKHWKH 1435
LA W ++W +
Sbjct: 313 ILLICLALWFWRYWSY 328
>ref|XP_001253261.1| PREDICTED: CD1b molecule-like, partial [Bos taurus].
Length = 405
Score = 325 bits (834), Expect = 6e-89
Identities = 157/292 (53%), Positives = 204/292 (69%), Gaps = 3/292 (1%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
P GD+++ F P S+ II I +F N SW + S WL +LQ + I+ +PWSK
Sbjct: 15 PRGDNKDVFHWPTSYHIIHIWTFANSSWAQNQGSGWLDDLQIQGWDSDLGTTIFLKPWSK 74
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEY---PFDVQIAGGCDLYHGETSVG 841
GNFS E + E + + +++F+ F + +H S+++LE+ PF +Q GC+L+ GE
Sbjct: 75 GNFSDEAMTELQDLFQVYFIGFTRVVQDHVSEFQLEFEYNPFVIQDIAGCELHSGEAIES 134
Query: 842 FVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLG 1021
+R A DF Q +S +P+P G+R Q C L Y G +II +LLS+TC R++LG
Sbjct: 135 SLRGALGELDFVRIQNHSCVPAPDSGSRGQKFCALTTQYPGISDIIERLLSETCLRYLLG 194
Query: 1022 LLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQ 1201
+LDAGKA+LQ+QV+PEAWLSSGP P PG L+LVCHVSGFYPKP+ VMWMRGEQEQPGTQQ
Sbjct: 195 VLDAGKAELQKQVKPEAWLSSGPTPGPGCLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQ 254
Query: 1202 GDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVG 1357
GDI+PNAD TWYLRVTLDVA G A+GLSC +KHSSLG QDIILYW +S+G
Sbjct: 255 GDIMPNADXTWYLRVTLDVATGGAAGLSCXMKHSSLGDQDIILYWGHRTSIG 306
>ref|NP_001192310.1| CD1D antigen, d polypeptide [Bos taurus].
Length = 415
Score = 322 bits (824), Expect = 9e-88
Identities = 161/311 (51%), Positives = 203/311 (65%), Gaps = 3/311 (0%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
Q P SFQ + ISSF NRSW AWLGELQ + +SD + + +PWS+G FS +
Sbjct: 103 QTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWE 162
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ +H L ++ F + + + +EYP ++QIA GC+L S F+R A+QG D
Sbjct: 163 QLQHTLLVYRSSFTRDIWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVL 222
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ SW+ +P Q V K+ N QGT E +H LL D P V G+L GK++L++Q
Sbjct: 223 SFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHWLLHDIWPELVRGVLQTGKSELEKQ 282
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAWLSSGP+P PG L+LVCHVSGFYPKP+ VMWMRGEQE+PGT+QGD++PNAD TWY
Sbjct: 283 VKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNADSTWY 342
Query: 1238 LRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE-QHSSVGW--XXXXXXXXXXXXTGLA 1408
LRVTLDVAAGE +GLSC+VKHSSLG QDIILYW H S G GL
Sbjct: 343 LRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYWNGNHVSRGLIVILVLLVFVLLFVGGLV 402
Query: 1409 FWHRKHWKHCD 1441
FW RKH ++ D
Sbjct: 403 FWFRKHRRYQD 413
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,294,138
Number of extensions: 1720747
Number of successful extensions: 5256
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 5196
Number of HSP's successfully gapped: 50
Length of query: 588
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,107,870
Effective search space: 6771777600
Effective search space used: 6771777600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853335.1| PREDICTED: similar to T-cell surface glycoprote... 402 e-112
Alignment gi|NP_001122310.1| CD1a8 protein [Canis lupus familiaris]. 399 e-111
Alignment gi|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupu... 393 e-109
Alignment gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote... 384 e-106
Alignment gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote... 375 e-104
Alignment gi|NP_001122308.1| T-cell surface glycoprotein CD1c [Canis lupu... 354 1e-97
Alignment gi|NP_001124302.1| CD1b molecule [Canis lupus familiaris]. 350 3e-96
Alignment gi|XP_545727.2| PREDICTED: similar to T-cell surface glycoprote... 331 1e-90
Alignment gi|XP_853347.1| PREDICTED: similar to T-cell surface glycoprote... 174 2e-43
Alignment gi|XP_853362.1| PREDICTED: similar to T-cell surface glycoprote... 89 1e-17
>ref|XP_853335.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) [Canis familiaris].
Length = 357
Score = 402 bits (1033), Expect = e-112
Identities = 193/334 (57%), Positives = 237/334 (70%), Gaps = 1/334 (0%)
Frame = +2
Query: 494 GGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKG 673
GGDSE+ QEPISF+II +SFY+ S + SAWL ELQTH + K+ Y Q WSKG
Sbjct: 15 GGDSEDDSQEPISFRIILTTSFYSSSSTQNQGSAWLDELQTHGWDNKTGAFRYLQSWSKG 74
Query: 674 NFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRI 853
NFS E+L+E++++ + +R F NH W+LEYPF +Q+ GCD + GE S GF+++
Sbjct: 75 NFSNEELLEAQNLFYTYTIRSPSTFHNHIRDWQLEYPFQIQLVLGCDSHFGEASAGFLQL 134
Query: 854 AYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDA 1033
AYQGSD SFQ SW PSP+GG+RAQ +C LF Y EI+HKLL D+CPRF+LGLLDA
Sbjct: 135 AYQGSDLLSFQNTSWRPSPEGGSRAQKICSLFIEYHVFSEIVHKLLFDSCPRFLLGLLDA 194
Query: 1034 GKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDIL 1213
GKA LQR+VRPEAWLS+G +P PGHL LVCHVSGFYPKP+WV WMRGEQEQ GT DIL
Sbjct: 195 GKAYLQRKVRPEAWLSAGSSPGPGHLRLVCHVSGFYPKPVWVSWMRGEQEQQGTLYSDIL 254
Query: 1214 PNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXXX 1393
PN DGTWYL+V+LDV + EA+GLSCRV+HSSLGGQD++L+WEQ S+G
Sbjct: 255 PNTDGTWYLQVSLDVKSKEAAGLSCRVRHSSLGGQDMVLHWEQPHSMGLVFLVVIVPLVL 314
Query: 1394 XTGLAFWHRKHWK-HCDPSSALHRLE*DPSHPGA 1492
GLA+W K WK H P E +PS PG+
Sbjct: 315 LAGLAWWLWKRWKAHWRPQCTDFPSEQEPSSPGS 348
>ref|NP_001122310.1| CD1a8 protein [Canis lupus familiaris].
Length = 329
Score = 399 bits (1026), Expect = e-111
Identities = 187/313 (59%), Positives = 229/313 (73%)
Frame = +2
Query: 494 GGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKG 673
GGDSE+ QEPISF+II +SFYN S + SAWL ELQTH K+ Y QPWSKG
Sbjct: 15 GGDSEDDSQEPISFRIILTTSFYNSSSTQNQGSAWLDELQTHGWNNKTGAFRYLQPWSKG 74
Query: 674 NFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRI 853
NFS E+L+E +++ + +R F NH W+LEYPF +Q+ GCD + GE S GF+++
Sbjct: 75 NFSNEELLEVQNLFYTYTIRSPSTFHNHIRDWQLEYPFQIQLVLGCDSHFGEASAGFLQL 134
Query: 854 AYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDA 1033
AYQGSD SFQ SW PSP+GG+RAQ VC LFN + EI+ KLL++ CPR +L LLDA
Sbjct: 135 AYQGSDVLSFQNTSWRPSPEGGSRAQKVCSLFNQDHVSHEIVRKLLNEICPRILLSLLDA 194
Query: 1034 GKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDIL 1213
GK DLQRQVRPEAWLS+GP+P GHL LVCHVSGFYPKP+WVMWMRGEQEQ G+Q+GD+L
Sbjct: 195 GKVDLQRQVRPEAWLSTGPSPGSGHLRLVCHVSGFYPKPVWVMWMRGEQEQTGSQRGDVL 254
Query: 1214 PNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXXX 1393
P+ADGTWYL+V+LDV A EA+GLSCRV+HSSLGGQD++L+WEQ S+G
Sbjct: 255 PHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQDMVLHWEQLPSMGLVFLVVIVPLVL 314
Query: 1394 XTGLAFWHRKHWK 1432
GL +W K WK
Sbjct: 315 LAGLVWWLWKRWK 327
>ref|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupus familiaris].
Length = 340
Score = 393 bits (1010), Expect = e-109
Identities = 184/314 (58%), Positives = 225/314 (71%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
P GDSE+ FQEP+SFQ+I +SFYN SW + + SAWL ELQTH + S ++ PW+K
Sbjct: 14 PEGDSEDAFQEPVSFQVILTTSFYNSSWTQNLASAWLDELQTHSWDSDSGTFLFLWPWAK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
G S+E+L+E E F +RF F + S W+LEYPF VQ+A GC LY G+ SVGF++
Sbjct: 74 GKLSKEELIERERTFHTFSIRFPLIFQDSVSDWQLEYPFQVQMAEGCGLYFGKPSVGFMQ 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
IAYQGSD SFQ SW PSPKGG RAQ VCKL N Y IH ++D CP ++LGLLD
Sbjct: 134 IAYQGSDLVSFQNKSWWPSPKGGRRAQQVCKLLNQYHVVNLRIHSHINDFCPHYLLGLLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGK DL RQVRPEAWLS+GP+PS HL LVCHVSGFYPKP+WV WMRGEQEQ G+ +GD+
Sbjct: 194 AGKGDLHRQVRPEAWLSAGPSPSSDHLQLVCHVSGFYPKPVWVTWMRGEQEQQGSWRGDV 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXX 1390
LP+ADGTWYL+V+LDV A E +GLSCRV+HSSLGGQD++L+WE+ S+G
Sbjct: 254 LPHADGTWYLQVSLDVKAKEVAGLSCRVRHSSLGGQDMVLHWERPHSMGLVFLVVIVPLV 313
Query: 1391 XXTGLAFWHRKHWK 1432
GLA+ K WK
Sbjct: 314 LLAGLAWCLWKRWK 327
>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 1 [Canis familiaris].
Length = 357
Score = 384 bits (985), Expect = e-106
Identities = 182/335 (54%), Positives = 232/335 (69%), Gaps = 1/335 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
P GDSE+ QEP+SF++I SS YNRSW + S WL ++Q H + K+ ++R PW++
Sbjct: 14 PEGDSEDDSQEPVSFRVIRTSSLYNRSWTQNQGSVWLDDVQIHAWDNKNRTFVFRWPWAQ 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
G+ S E+ ME++ + ++ + + +H SQW+LEYPF VQ+ GC+L GE GF+R
Sbjct: 74 GDLSNEERMEADQLFYSNYIFYNLVYHDHVSQWQLEYPFQVQMEIGCELRIGEPFSGFMR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
AYQG+D FQ SW PSPKGG+RAQ +FN Y E H+L++ CPR+VL LLD
Sbjct: 134 YAYQGTDLIRFQNTSWRPSPKGGSRAQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
GKADLQRQVRPEAWLS+GP+P PG L LVCHVSGFYPKP+ VMWMRGEQEQ GTQ+GD+
Sbjct: 194 VGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFYPKPVQVMWMRGEQEQQGTQRGDV 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXX 1390
LP+ADGTWYL+V+LDV A EA+GLSCRV+HSSLGGQD++L+WEQ SVG
Sbjct: 254 LPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQDMVLHWEQPHSVGLVFLVVIVPLV 313
Query: 1391 XXTGLAFWHRKHWK-HCDPSSALHRLE*DPSHPGA 1492
GLA+W K WK H P E +PS P +
Sbjct: 314 LLAGLAWWLWKRWKAHWRPQCMDFPSEQEPSSPSS 348
>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 2 [Canis familiaris].
Length = 352
Score = 375 bits (962), Expect = e-104
Identities = 179/334 (53%), Positives = 229/334 (68%), Gaps = 1/334 (0%)
Frame = +2
Query: 494 GGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKG 673
G + E QEP+SF++I SS YNRSW + S WL ++Q H + K+ ++R PW++G
Sbjct: 10 GYRTREYSQEPVSFRVIRTSSLYNRSWTQNQGSVWLDDVQIHAWDNKNRTFVFRWPWAQG 69
Query: 674 NFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRI 853
+ S E+ ME++ + ++ + + +H SQW+LEYPF VQ+ GC+L GE GF+R
Sbjct: 70 DLSNEERMEADQLFYSNYIFYNLVYHDHVSQWQLEYPFQVQMEIGCELRIGEPFSGFMRY 129
Query: 854 AYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDA 1033
AYQG+D FQ SW PSPKGG+RAQ +FN Y E H+L++ CPR+VL LLD
Sbjct: 130 AYQGTDLIRFQNTSWRPSPKGGSRAQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLDV 189
Query: 1034 GKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDIL 1213
GKADLQRQVRPEAWLS+GP+P PG L LVCHVSGFYPKP+ VMWMRGEQEQ GTQ+GD+L
Sbjct: 190 GKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFYPKPVQVMWMRGEQEQQGTQRGDVL 249
Query: 1214 PNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXXX 1393
P+ADGTWYL+V+LDV A EA+GLSCRV+HSSLGGQD++L+WEQ SVG
Sbjct: 250 PHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQDMVLHWEQPHSVGLVFLVVIVPLVL 309
Query: 1394 XTGLAFWHRKHWK-HCDPSSALHRLE*DPSHPGA 1492
GLA+W K WK H P E +PS P +
Sbjct: 310 LAGLAWWLWKRWKAHWRPQCMDFPSEQEPSSPSS 343
>ref|NP_001122308.1| T-cell surface glycoprotein CD1c [Canis lupus familiaris].
Length = 332
Score = 354 bits (909), Expect = 1e-97
Identities = 170/315 (53%), Positives = 216/315 (68%)
Frame = +2
Query: 497 GDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGN 676
GD+ + QE + F II ISSF N+SW + S WLG++QTH + S +I+ WSKGN
Sbjct: 16 GDNAQAIQEHLVFTIIQISSFVNQSWVQHRGSGWLGDMQTHGWDTDSGTIIFLHTWSKGN 75
Query: 677 FSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIA 856
FS E+L++ E + R++ + + + SQ YPF++Q+ GC+L+ S GF+R A
Sbjct: 76 FSDEELLDLELLFRVYLIGLTREAQEYVSQLHFTYPFEIQVVVGCELHSSGFSKGFLRSA 135
Query: 857 YQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAG 1036
Y+GSDF +FQ S +PSP ++AQ VC L N Y+G EI+++L+++TCPRFVLGL DA
Sbjct: 136 YEGSDFVTFQNMSLVPSPGADSKAQSVCYLINQYEGIKEIVYRLITNTCPRFVLGLFDAA 195
Query: 1037 KADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILP 1216
K D +RQVRPEAWLS+GP P PG L LVCHVSGF+PKP+ V WMRGEQEQ GTQ+GDILP
Sbjct: 196 KVDYKRQVRPEAWLSTGPAPGPGRLRLVCHVSGFHPKPVQVTWMRGEQEQQGTQRGDILP 255
Query: 1217 NADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXXXX 1396
+ADGTWYLRVTLDVAA EA+GLSCRVKHSSLGGQDI+LYW H V
Sbjct: 256 HADGTWYLRVTLDVAAREAAGLSCRVKHSSLGGQDIVLYWGHHVPVYLILLAVTVPLVLL 315
Query: 1397 TGLAFWHRKHWKHCD 1441
L W RK + D
Sbjct: 316 IVLGLWFRKRCSYQD 330
>ref|NP_001124302.1| CD1b molecule [Canis lupus familiaris].
Length = 337
Score = 350 bits (897), Expect = 3e-96
Identities = 164/319 (51%), Positives = 222/319 (69%), Gaps = 4/319 (1%)
Frame = +2
Query: 491 PGGDSEEG---FQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQP 661
PGG E Q P S+++I ISSF N SW + S WLG++Q H + + ++ +P
Sbjct: 15 PGGGGEAAPADLQGPTSYRVIQISSFANSSWAQNQGSGWLGDVQIHGWDADAGRAVFLKP 74
Query: 662 WSKGNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVG 841
WSKGNFS E+++E E I++++ F+ +HA +++++YPF++Q GC L+ +
Sbjct: 75 WSKGNFSDEEMVELEEIIQVYLTGFILEVQDHAPEFQMQYPFEIQGVAGCQLHPDSGTES 134
Query: 842 FVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLG 1021
F+R A G DF S + +S +P+P+GG+RAQ +C+L Y+G +I KLL +TCPRF+LG
Sbjct: 135 FLRGALGGLDFLSLKNHSCVPAPEGGSRAQRICELILQYEGIRDIAEKLLFETCPRFLLG 194
Query: 1022 LLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQ 1201
LLDAGKA+L+R VRPEAWLS+GP+P PG L LVCHVSGFYPKP+WV WMRGEQEQ GT++
Sbjct: 195 LLDAGKAELRRPVRPEAWLSAGPSPGPGRLQLVCHVSGFYPKPVWVTWMRGEQEQQGTRR 254
Query: 1202 GDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW-XXXXXX 1378
GD+LP+ADGTWYLR TLDVAA EA+GLSCRVKHSSLGGQD++L+W S+G
Sbjct: 255 GDVLPHADGTWYLRATLDVAAQEAAGLSCRVKHSSLGGQDMVLHWGNSISIGLISLAVIL 314
Query: 1379 XXXXXXTGLAFWHRKHWKH 1435
GL FW + W +
Sbjct: 315 PVLIFLIGLPFWLWRRWSY 333
>ref|XP_545727.2| PREDICTED: similar to T-cell surface glycoprotein CD1e precursor
(CD1e antigen) (R2G1) [Canis familiaris].
Length = 300
Score = 331 bits (849), Expect = 1e-90
Identities = 160/285 (56%), Positives = 205/285 (71%), Gaps = 3/285 (1%)
Frame = +2
Query: 494 GGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKG 673
GG + G +EP SF+++ SSF N SW WLGELQTH + D + + PWS+G
Sbjct: 10 GGLVQRGAKEPPSFRVLQTSSFANYSWAYTQGGGWLGELQTHGWDNVRDTIRFLWPWSRG 69
Query: 674 NFSREDLMESEHILRMFFVRF---VQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGF 844
NFS +L + + ++F F VQAF A ++ EYPF++Q++ GC L+ G+ S F
Sbjct: 70 NFSAVELKNLQSLFALYFHGFAIEVQAF---ARYFQFEYPFELQMSAGCRLHTGKASESF 126
Query: 845 VRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGL 1024
+ AYQGSDF SFQ NSW PSP G+RA+ VC++ N YQ EI+ L+ CP+F+ G+
Sbjct: 127 LNGAYQGSDFLSFQGNSWYPSPGAGSRARKVCEMLNRYQDIKEIVKSLIGYICPQFLAGI 186
Query: 1025 LDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQG 1204
L+AGKA+L RQVRPEAWLS+ P+P PG L LVCHVSGF+PKP+ V WMRGEQEQ GT++G
Sbjct: 187 LEAGKAELGRQVRPEAWLSADPSPGPGRLRLVCHVSGFHPKPVRVTWMRGEQEQRGTRRG 246
Query: 1205 DILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
D LP+ADGTWYLR TLDVAA EA+GLSCRVKHSSLGGQD++L+WE
Sbjct: 247 DFLPHADGTWYLRATLDVAAREAAGLSCRVKHSSLGGQDMVLHWE 291
>ref|XP_853347.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) [Canis familiaris].
Length = 258
Score = 174 bits (441), Expect = 2e-43
Identities = 87/145 (60%), Positives = 98/145 (67%)
Frame = +2
Query: 995 DTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRG 1174
D+CP F+LGLLDAGK LQRQVRPEAWLS+GP+P PG L LVCHVSGFYPKP+WV WMR
Sbjct: 124 DSCPPFLLGLLDAGKTHLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFYPKPVWVTWMRS 183
Query: 1175 EQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSV 1354
EQEQ GTQ LP+ADG WY +V+LDV E +GLSC V HSSLGG EQ S+
Sbjct: 184 EQEQQGTQ----LPHADGMWYRQVSLDVKVKETAGLSCWVTHSSLGGH------EQPPSM 233
Query: 1355 GWXXXXXXXXXXXXTGLAFWHRKHW 1429
G GLA+W K W
Sbjct: 234 GLVFLVVIVPLVLLAGLAWWLWKRW 258
Score = 104 bits (259), Expect = 3e-22
Identities = 65/166 (39%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Frame = +2
Query: 491 PGGDSEEG-------FQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVI 649
PGGD E+ FQEPISFQII +SFY+RSW + V SAWL ELQT+ + S
Sbjct: 14 PGGDREDVYLSFPTYFQEPISFQIILTTSFYSRSWTQNVGSAWLDELQTYGWDSDSGTFT 73
Query: 650 YRQPWSKGNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGE 829
PWS+GNFS ++LME + F +RF F +H S+W+LE ++ G
Sbjct: 74 CMWPWSRGNFSNKELMEEQRSFHTFSIRFPLIFQDHFSEWQLECTSSKRLDSCPPFLLGL 133
Query: 830 TSVGFVRIAYQGSDFASFQKNSWL---PSPKGGTRAQLVCKLFNLY 958
G + Q + +WL PSP G R QLVC + Y
Sbjct: 134 LDAGKTHLQRQ------VRPEAWLSAGPSP-GPGRLQLVCHVSGFY 172
>ref|XP_853362.1| PREDICTED: similar to T-cell surface glycoprotein CD1b precursor
(CD1b antigen) [Canis familiaris].
Length = 197
Score = 89.0 bits (219), Expect = 1e-17
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = +2
Query: 494 GGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKG 673
GGDSE+ FQ P+SFQ+I SS YN S + SAWL ELQTH + K I+ PWS G
Sbjct: 15 GGDSEDAFQGPVSFQVILTSSLYNHSSTQNQGSAWLDELQTHGWDSKMGAFIFLWPWSTG 74
Query: 674 NFSREDLMESEHILRMFFVRFVQAFFNHASQWKLE 778
N S E+L+ +E ++ F N++S W+LE
Sbjct: 75 NLSNEELIIAEESFHSSTIQLPLCFHNYSSDWQLE 109
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,699,109
Number of extensions: 1711348
Number of successful extensions: 5840
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5802
Number of HSP's successfully gapped: 21
Length of query: 588
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 480
Effective length of database: 15,274,216
Effective search space: 7331623680
Effective search space used: 7331623680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031665.2| antigen-presenting glycoprotein CD1d1 precursor... 291 9e-79
Alignment gi|NP_031666.2| antigen-presenting glycoprotein CD1d2 precursor... 276 4e-74
Alignment gi|NP_032235.1| major histocompatibility complex class I-relate... 72 2e-12
Alignment gi|NP_001020379.1| MHC class I family member [Mus musculus]. 68 2e-11
Alignment gi|NP_034554.2| hereditary hemochromatosis protein homolog prec... 67 3e-11
Alignment gi|NP_038506.2| zinc-alpha-2-glycoprotein precursor [Mus muscul... 66 1e-10
Alignment gi|NP_032225.2| histocompatibility 2, blastocyst [Mus musculus]. 65 1e-10
Alignment gi|NP_001108547.1| histocompatibility 2, M region locus 5 [Mus ... 65 2e-10
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 64 5e-10
Alignment gi|XP_001003852.3| PREDICTED: h-2 class I histocompatibility an... 63 8e-10
>ref|NP_031665.2| antigen-presenting glycoprotein CD1d1 precursor [Mus musculus].
Length = 336
Score = 291 bits (746), Expect = 9e-79
Identities = 139/280 (49%), Positives = 185/280 (66%), Gaps = 3/280 (1%)
Frame = +2
Query: 509 EGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSRE 688
E Q+ +F+ + +SSF NRSW WLG+LQTHR S + + +PWS+G S +
Sbjct: 20 EAQQKNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQ 79
Query: 689 DLMESEHILRMF---FVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAY 859
+ +H+ +++ F R +Q S K +YP ++Q++ GC++Y G S F+ +A+
Sbjct: 80 QWEKLQHMFQVYRVSFTRDIQELVKMMSP-KEDYPIEIQLSAGCEMYPGNASESFLHVAF 138
Query: 860 QGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGK 1039
QG F SW P + L K+ N QGT + LL+DTCP FV GLL+AGK
Sbjct: 139 QGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGK 198
Query: 1040 ADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPN 1219
+DL++Q +P AWLSS P+ + GH LVCHVSGFYPKP+WVMWMRG+QEQ GT +GD LPN
Sbjct: 199 SDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPN 258
Query: 1220 ADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
AD TWYL+ TLDV AGE +GL+CRVKHSSLGGQDIILYW+
Sbjct: 259 ADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWD 298
>ref|NP_031666.2| antigen-presenting glycoprotein CD1d2 precursor [Mus musculus].
Length = 336
Score = 276 bits (706), Expect = 4e-74
Identities = 135/277 (48%), Positives = 181/277 (65%), Gaps = 3/277 (1%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
Q+ +F+ + SSF N SW LG+LQTHR S I+ + +PWS+G S +
Sbjct: 23 QKNYTFRCLQTSSFANISWSRTDSLILLGDLQTHRWSNDSAIISFTKPWSQGKLSNQQWE 82
Query: 698 ESEHILRMF---FVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGS 868
+ +H+ +++ F R +Q S K +YP ++Q++ GC++Y G S F +A+QG
Sbjct: 83 KLQHMFQVYRVSFTRDIQELVKMMSP-KEDYPIEIQLSTGCEMYPGNASESFFHVAFQGK 141
Query: 869 DFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADL 1048
F+ SW + L K+ N QGT + LL+DT P+F GLL+AGK+DL
Sbjct: 142 YAVRFRGTSWQRVLGAPSWLDLPIKVLNADQGTSATVQTLLNDTWPQFARGLLEAGKSDL 201
Query: 1049 QRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADG 1228
++Q +P AWLSS P+ + GHL LVCHVSGFYPKP+WVMWMRG+QEQ GT +GD LPNAD
Sbjct: 202 EKQEKPVAWLSSVPSSAHGHLQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADE 261
Query: 1229 TWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
TWYL+ TLDV AGE +GL+CRVKHSSLGGQDIILYW+
Sbjct: 262 TWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWD 298
>ref|NP_032235.1| major histocompatibility complex class I-related gene protein
precursor [Mus musculus].
Length = 341
Score = 71.6 bits (174), Expect = 2e-12
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 11/227 (4%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILRMFF------VRFVQAFFNHASQWKLEYPFDVQIAGGCD 814
+ PW N + + +LR + +R +Q +NH+ + GC+
Sbjct: 64 KAPWMAENLAPDHWERYTQLLRGWQQTFKAELRHLQRHYNHSGLHTYQRMI------GCE 117
Query: 815 LYHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKL 988
L ++ GF++ AY G DF F K+ SWL A + + + L+
Sbjct: 118 LLEDGSTTGFLQYAYDGQDFIIFNKDTLSWLAM---DYVAHITKQAWEANLHELQYQKNW 174
Query: 989 LSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWM 1168
L + C ++ L+ G+ L+R P ++ PG C GFYP I + WM
Sbjct: 175 LEEECIAWLKRFLEYGRDTLERTEHPVV-RTTRKETFPGITTFFCRAHGFYPPEISMTWM 233
Query: 1169 R-GEQEQPGTQQGDILPNADGTW--YLRVTLDVAAGEASGLSCRVKH 1300
+ GE+ G +LP+ DGT+ +L V LD + + SC V+H
Sbjct: 234 KNGEEIAQEVDYGGVLPSGDGTYQTWLSVNLDPQSNDV--YSCHVEH 278
>ref|NP_001020379.1| MHC class I family member [Mus musculus].
Length = 382
Score = 68.2 bits (165), Expect = 2e-11
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 2/184 (1%)
Frame = +2
Query: 794 QIAGGCDL-YHGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTL 970
Q GCDL G G+++ AY+G D+ + ++ L + A L+ + G
Sbjct: 117 QRLSGCDLGSDGRLLRGYLQFAYEGQDYIALNED--LKTWTAADMAALITRRKWEQAGAA 174
Query: 971 EIIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKP 1150
E+ L C ++ L+ GK L R P+A ++ P P G + L C GFYP
Sbjct: 175 ELYKAYLEGECVEWLRRYLERGKETLLRTDPPKAHVTHHPRPE-GDVTLRCWALGFYPAD 233
Query: 1151 IWVMW-MRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDII 1327
I + W + GE+ + + P DGT+ ++ V G+ +C V H L + +
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVHHEGL-PEPLT 292
Query: 1328 LYWE 1339
L WE
Sbjct: 293 LRWE 296
>ref|NP_034554.2| hereditary hemochromatosis protein homolog precursor [Mus musculus].
Length = 359
Score = 67.4 bits (163), Expect = 3e-11
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 18/247 (7%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILR----MFFVRF--VQAFFNHASQWKLEYPFD---VQIAG 805
R PW S + + L+ MF V F + +NH+ KL + +Q+
Sbjct: 75 RAPWILEQTSSQLWLHLSQSLKGWDYMFIVDFWTIMGNYNHSKVTKLGVVSESHILQVVL 134
Query: 806 GCDLYHGETSVGFVRIAYQGSDFASF--QKNSWLPSPKGGTRAQLVCKLFNLYQGTLEII 979
GC+++ ++ GF R Y G D F + +W + G ++ ++ ++ +
Sbjct: 135 GCEVHEDNSTSGFWRYGYDGQDHLEFCPKTLNWSAAEPGAWATKVE---WDEHKIRAKQN 191
Query: 980 HKLLSDTCPRFVLGLLDAGKADLQRQVRP-----EAWLSSGPNPSPGHLMLVCHVSGFYP 1144
L CP + LL+ G+ L +QV W S+G + L C F+P
Sbjct: 192 RDYLEKDCPEQLKRLLELGRGVLGQQVPTLVKVTRHWASTGTS-------LRCQALDFFP 244
Query: 1145 KPIWVMWMRGEQ--EQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQ 1318
+ I + W++ Q + +LPN D T+ +TL VA G+ + +C+V+H L Q
Sbjct: 245 QNITMRWLKDNQPLDAKDVNPEKVLPNGDETYQGWLTLAVAPGDETRFTCQVEHPGL-DQ 303
Query: 1319 DIILYWE 1339
+ WE
Sbjct: 304 PLTASWE 310
>ref|NP_038506.2| zinc-alpha-2-glycoprotein precursor [Mus musculus].
Length = 307
Score = 65.9 bits (159), Expect = 1e-10
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 2/185 (1%)
Frame = +2
Query: 806 GCDLYHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEII 979
GC++ + +S R AY G DF F K +W+P +L + +Y ++
Sbjct: 117 GCEITNNRSSGAVWRYAYDGEDFIEFNKEIPAWIPLDPAAANTKLKWEAEKVY---VQRA 173
Query: 980 HKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWV 1159
L + CP + L+ ++ L R P ++S P G+ + C GFYP+ I +
Sbjct: 174 KAYLEEECPEMLKRYLNYSRSHLDRIDPPTVTITSRVIPG-GNRIFKCLAYGFYPQRISL 232
Query: 1160 MWMRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
W + ++ + + PN +GT+ ++V+ + C + H Q + + W+
Sbjct: 233 HWNKANKKLAFEPERGVFPNGNGTYLSWAEVEVSPQDIDPFFCLIDHRGF-SQSLSVQWD 291
Query: 1340 QHSSV 1354
+ V
Sbjct: 292 RTRKV 296
>ref|NP_032225.2| histocompatibility 2, blastocyst [Mus musculus].
Length = 357
Score = 65.5 bits (158), Expect = 1e-10
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 2/190 (1%)
Frame = +2
Query: 794 QIAGGCDL-YHGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTL 970
Q GCD+ G G+++ AY G D+ + ++ L + L+ + G
Sbjct: 125 QRLSGCDMGLDGRLLRGYLQFAYDGRDYITLNED--LKTWMAADLVALITRRKWEQAGAA 182
Query: 971 EIIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKP 1150
E+ L C ++ L GK L R P+A ++ P P+ G + L C GFYP
Sbjct: 183 ELYKFYLEAECVEWLRRYLQLGKETLLRTDPPKAHVTHHPRPA-GDVTLRCWALGFYPAD 241
Query: 1151 IWVMW-MRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDII 1327
I + W + GE+ + + P DGT+ + V G+ +C V H L + +
Sbjct: 242 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVYHEGL-PEPLT 300
Query: 1328 LYWEQHSSVG 1357
L WE S G
Sbjct: 301 LRWEPPPSTG 310
>ref|NP_001108547.1| histocompatibility 2, M region locus 5 [Mus musculus].
Length = 348
Score = 65.1 bits (157), Expect = 2e-10
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 5/172 (2%)
Frame = +2
Query: 839 GFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRF 1012
G + AY G D+ + + SW+ G T AQ+ + + G E L C
Sbjct: 137 GHEKHAYDGRDYLTLSPDLHSWVA---GDTAAQITLRRWEK-SGVSEQRQSFLKGECVES 192
Query: 1013 VLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPG 1192
+ L+ GK L R P+A ++ P P G + L C GFYP I + W E++
Sbjct: 193 LRTYLEIGKETLLRTDPPKAHVTHHPRPE-GEVTLRCWALGFYPANIILTWQWDEEDL-- 249
Query: 1193 TQQGDIL---PNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
TQ D++ P DGT+ ++ V +GE +C V+H L Q ++L W+
Sbjct: 250 TQDMDLIETRPAGDGTFQKWASVVVPSGEEQRYTCHVQHEGL-TQPLVLKWD 300
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 63.5 bits (153), Expect = 5e-10
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 5/187 (2%)
Frame = +2
Query: 806 GCDL-YHGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNL---YQGTLE 973
GCDL G G+ + AY GSD+ + ++ K T A L ++ G E
Sbjct: 125 GCDLGSDGRLLRGYWQFAYDGSDYIALNQDL-----KTWTAADLAAQITRRRWEQGGVAE 179
Query: 974 IIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPI 1153
+ L D C ++ L+ GK L R P+ ++ P S + L C GFYP I
Sbjct: 180 TLRAYLEDPCLEWLRRYLELGKETLLRTDPPKVHVTHHPR-SEDDVTLRCWALGFYPADI 238
Query: 1154 WVMW-MRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIIL 1330
+ W + GE+ + + P DGT+ ++ V G+ +C V H L + + L
Sbjct: 239 TLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGL-PEPLTL 297
Query: 1331 YWEQHSS 1351
WE S
Sbjct: 298 RWEPRPS 304
>ref|XP_001003852.3| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
isoform 9 [Mus musculus].
Length = 385
Score = 62.8 bits (151), Expect = 8e-10
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 4/186 (2%)
Frame = +2
Query: 794 QIAGGCDL-YHGETSVGFVRIAYQGSDFASFQK--NSWLPSPKGGTRAQLVCKLFNLYQG 964
Q+ GCD+ G G+++ AY G D+ + + N+W + A L+ + G
Sbjct: 117 QLLFGCDVGSDGRLLRGYLQFAYDGRDYIALNEDLNTWTAADL----AALITRRKWEQAG 172
Query: 965 TLEIIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYP 1144
E L C + L GK L R P+A ++ P S G + L C GFYP
Sbjct: 173 AAEHYKAYLEGECVESLRRYLQLGKETLLRTDPPKAHVTHHPR-SEGDVTLRCWALGFYP 231
Query: 1145 KPIWVMW-MRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQD 1321
I + W + GE+ + + P DGT+ + V G+ +C V+H L +
Sbjct: 232 ADITLTWQLNGEELTQDIELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVEHEGL-PEH 290
Query: 1322 IILYWE 1339
+ L WE
Sbjct: 291 LTLRWE 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,912,769
Number of extensions: 1437259
Number of successful extensions: 4645
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 4587
Number of HSP's successfully gapped: 94
Length of query: 588
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 481
Effective length of database: 12,403,707
Effective search space: 5966183067
Effective search space used: 5966183067
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001754.2| T-cell surface glycoprotein CD1a precursor [Hom... 407 e-113
Alignment gi|NP_001755.1| T-cell surface glycoprotein CD1b precursor [Hom... 355 1e-97
Alignment gi|NP_001756.2| T-cell surface glycoprotein CD1c precursor [Hom... 349 4e-96
Alignment gi|NP_001036048.1| T-cell surface glycoprotein CD1e, membrane-a... 335 6e-92
Alignment gi|NP_112155.2| T-cell surface glycoprotein CD1e, membrane-asso... 335 6e-92
Alignment gi|NP_001757.1| antigen-presenting glycoprotein CD1d precursor ... 304 2e-82
Alignment gi|NP_001036049.1| T-cell surface glycoprotein CD1e, membrane-a... 276 3e-74
Alignment gi|NP_001172043.1| T-cell surface glycoprotein CD1e, membrane-a... 266 5e-71
Alignment gi|NP_001036050.1| T-cell surface glycoprotein CD1e, membrane-a... 240 3e-63
Alignment gi|NP_001172044.1| T-cell surface glycoprotein CD1e, membrane-a... 179 6e-45
>ref|NP_001754.2| T-cell surface glycoprotein CD1a precursor [Homo sapiens].
Length = 327
Score = 407 bits (1046), Expect = e-113
Identities = 184/311 (59%), Positives = 229/311 (73%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PG + +G +EP+SF + WI+SFYN SW++ + S WL +LQTH + S +++ PWS+
Sbjct: 13 PGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDSNSSTIVFLCPWSR 72
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS E+ E E + R+ +R + +A + + EYPF++Q+ GGC+L+ G+ S F++
Sbjct: 73 GNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGCELHSGKVSGSFLQ 132
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
+AYQGSDF SFQ NSWLP P G A+ CK+ N Q +I H LLSDTCPRF+LGLLD
Sbjct: 133 LAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLLSDTCPRFILGLLD 192
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA LQRQV+PEAWLS GP+P PGHL LVCHVSGFYPKP+WVMWMRGEQEQ GTQ+GDI
Sbjct: 193 AGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGDI 252
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXX 1390
LP+ADGTWYLR TL+VAAGEA+ LSCRVKHSSL GQDI+LYWE HSSVG+
Sbjct: 253 LPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSSVGFIILAVIVPLL 312
Query: 1391 XXTGLAFWHRK 1423
GLA W RK
Sbjct: 313 LLIGLALWFRK 323
>ref|NP_001755.1| T-cell surface glycoprotein CD1b precursor [Homo sapiens].
Length = 333
Score = 355 bits (910), Expect = 1e-97
Identities = 168/289 (58%), Positives = 210/289 (72%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGG+SE FQ P SF +I SSF N +W + S WL +LQ H + S I+ +PWSK
Sbjct: 14 PGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDSDSGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS +++ E E I R++ F + + A ++++YPF++Q GC+L+ G V F+R
Sbjct: 74 GNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S + S +PSP+GG+RAQ C L YQG +E + LL +TCPR++LG+L+
Sbjct: 134 GALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLN 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKADLQRQV+PEAWLSSGP+P PG L LVCHVSGFYPKP+WVMWMRGEQEQ GTQ GDI
Sbjct: 194 AGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDI 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVG 1357
LPNA+ TWYLR TLDVA GEA+GLSCRVKHSSL GQDIILYW +S+G
Sbjct: 254 LPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWRNPTSIG 302
>ref|NP_001756.2| T-cell surface glycoprotein CD1c precursor [Homo sapiens].
Length = 333
Score = 349 bits (896), Expect = 4e-96
Identities = 166/318 (52%), Positives = 212/318 (66%), Gaps = 1/318 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGD+ + QE +SF +I I SF N+SW S WL ELQTH + +S +I+ WSK
Sbjct: 14 PGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHNWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS E+L + E + R + + +HASQ +YPF+VQ+ GC+L+ G++ GF +
Sbjct: 74 GNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGCELHSGKSPEGFFQ 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFN-LYQGTLEIIHKLLSDTCPRFVLGLL 1027
+A+ G D SFQ +W+PSP G+ AQ VC L N Y+G E ++ L+ TCPRF+LGLL
Sbjct: 134 VAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNLIRSTCPRFLLGLL 193
Query: 1028 DAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGD 1207
DAGK + RQVRPEAWLSS P+ G L+LVCH SGFYPKP+WV WMR EQEQ GT+ GD
Sbjct: 194 DAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWMRNEQEQLGTKHGD 253
Query: 1208 ILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXX 1387
ILPNADGTWYL+V L+VA+ E +GLSCRV+HSSLGGQDIILYW H S+ W
Sbjct: 254 ILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHFSMNWIALVVIVPL 313
Query: 1388 XXXTGLAFWHRKHWKHCD 1441
L W +KH + D
Sbjct: 314 VILIVLVLWFKKHCSYQD 331
>ref|NP_001036048.1| T-cell surface glycoprotein CD1e, membrane-associated isoform b
precursor [Homo sapiens].
Length = 376
Score = 335 bits (860), Expect = 6e-92
Identities = 155/277 (55%), Positives = 203/277 (73%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E +SF+++ SSF N SW S WLG+LQTH + + + +PWS GNFS+++L
Sbjct: 32 EEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ + +++F F+Q A Q++LEYPF++QI GC + + F+ +AYQGSDF
Sbjct: 92 NLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRMNAPQI---FLNMAYQGSDFL 148
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ SW PSP G RAQ +CK+ N Y EI+ LL TCPRF+ GL++AG+++L+R+
Sbjct: 149 SFQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRK 208
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAWLS GP+P PG L LVCHVSGFYPKP+WVMWMRGEQEQ GTQ+GD+LPNAD TWY
Sbjct: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWY 268
Query: 1238 LRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHS 1348
LR TLDVAAGEA+GLSCRVKHSSLGG D+I++W +S
Sbjct: 269 LRATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYS 305
>ref|NP_112155.2| T-cell surface glycoprotein CD1e, membrane-associated isoform a
precursor [Homo sapiens].
Length = 388
Score = 335 bits (860), Expect = 6e-92
Identities = 155/277 (55%), Positives = 203/277 (73%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E +SF+++ SSF N SW S WLG+LQTH + + + +PWS GNFS+++L
Sbjct: 32 EEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ + +++F F+Q A Q++LEYPF++QI GC + + F+ +AYQGSDF
Sbjct: 92 NLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRMNAPQI---FLNMAYQGSDFL 148
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ SW PSP G RAQ +CK+ N Y EI+ LL TCPRF+ GL++AG+++L+R+
Sbjct: 149 SFQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRK 208
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAWLS GP+P PG L LVCHVSGFYPKP+WVMWMRGEQEQ GTQ+GD+LPNAD TWY
Sbjct: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWY 268
Query: 1238 LRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHS 1348
LR TLDVAAGEA+GLSCRVKHSSLGG D+I++W +S
Sbjct: 269 LRATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYS 305
>ref|NP_001757.1| antigen-presenting glycoprotein CD1d precursor [Homo sapiens].
Length = 335
Score = 304 bits (779), Expect = 2e-82
Identities = 146/278 (52%), Positives = 186/278 (66%)
Frame = +2
Query: 503 SEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFS 682
S E Q + + ISSF N SW AWLGELQTH SD V +PWS+G FS
Sbjct: 18 SAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFS 77
Query: 683 REDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQ 862
+ +HI R++ F + A +L YP ++Q++ GC+++ G S F +A+Q
Sbjct: 78 DQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQ 137
Query: 863 GSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKA 1042
G D SFQ SW P+ + L ++ N + T E + LL+ TCP+FV GLL++GK+
Sbjct: 138 GKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKS 197
Query: 1043 DLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNA 1222
+L++QV+P+AWLS GP+P PG L+LVCHVSGFYPKP+WV WMRGEQEQ GTQ GDILPNA
Sbjct: 198 ELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNA 257
Query: 1223 DGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYW 1336
D TWYLR TLDV AGEA+GLSCRVKHSSL GQDI+LYW
Sbjct: 258 DETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYW 295
>ref|NP_001036049.1| T-cell surface glycoprotein CD1e, membrane-associated isoform c
precursor [Homo sapiens].
Length = 290
Score = 276 bits (707), Expect = 3e-74
Identities = 126/241 (52%), Positives = 171/241 (70%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E +SF+++ SSF N SW S WLG+LQTH + + + +PWS GNFS+++L
Sbjct: 32 EEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ + +++F F+Q A Q++LEYPF++QI GC + + F+ +AYQGSDF
Sbjct: 92 NLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRMNAPQI---FLNMAYQGSDFL 148
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ SW PSP G RAQ +CK+ N Y EI+ LL TCPRF+ GL++AG+++L+R+
Sbjct: 149 SFQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRK 208
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAWLS GP+P PG L LVCHVSGFYPKP+WVMWMRGEQEQ GTQ+GD+LPNAD TW+
Sbjct: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWW 268
Query: 1238 L 1240
+
Sbjct: 269 I 269
>ref|NP_001172043.1| T-cell surface glycoprotein CD1e, membrane-associated isoform m
precursor [Homo sapiens].
Length = 289
Score = 266 bits (680), Expect = 5e-71
Identities = 122/189 (64%), Positives = 149/189 (78%)
Frame = +2
Query: 782 PFDVQIAGGCDLYHGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQ 961
PF++QI GC + + F+ +AYQGSDF SFQ SW PSP G RAQ +CK+ N Y
Sbjct: 21 PFEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL 77
Query: 962 GTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFY 1141
EI+ LL TCPRF+ GL++AG+++L+R+V+PEAWLS GP+P PG L LVCHVSGFY
Sbjct: 78 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 137
Query: 1142 PKPIWVMWMRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQD 1321
PKP+WVMWMRGEQEQ GTQ+GD+LPNAD TWYLR TLDVAAGEA+GLSCRVKHSSLGG D
Sbjct: 138 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD 197
Query: 1322 IILYWEQHS 1348
+I++W +S
Sbjct: 198 LIIHWGGYS 206
>ref|NP_001036050.1| T-cell surface glycoprotein CD1e, membrane-associated isoform d
precursor [Homo sapiens].
Length = 321
Score = 240 bits (612), Expect = 3e-63
Identities = 110/219 (50%), Positives = 151/219 (68%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E +SF+++ SSF N SW S WLG+LQTH + + + +PWS GNFS+++L
Sbjct: 32 EEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ + +++F F+Q A Q++LEYPF++QI GC + + F+ +AYQGSDF
Sbjct: 92 NLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRMNAPQI---FLNMAYQGSDFL 148
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ SW PSP G RAQ +CK+ N Y EI+ LL TCPRF+ GL++AG+++L+R+
Sbjct: 149 SFQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRK 208
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRG 1174
V+PEAWLS GP+P PG L LVCHVSGFYPKP+WVMWMRG
Sbjct: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRG 247
>ref|NP_001172044.1| T-cell surface glycoprotein CD1e, membrane-associated isoform h
precursor [Homo sapiens].
Length = 286
Score = 179 bits (455), Expect = 6e-45
Identities = 78/109 (71%), Positives = 92/109 (84%)
Frame = +2
Query: 1022 LLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQ 1201
++ A Q +++PEAWLS GP+P PG L LVCHVSGFYPKP+WVMWMRGEQEQ GTQ+
Sbjct: 107 IVQASAGQFQLELKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQR 166
Query: 1202 GDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHS 1348
GD+LPNAD TWYLR TLDVAAGEA+GLSCRVKHSSLGG D+I++W +S
Sbjct: 167 GDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYS 215
Score = 71.2 bits (173), Expect = 3e-12
Identities = 32/87 (36%), Positives = 53/87 (60%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+E +SF+++ SSF N SW S WLG+LQTH + + + +PWS GNFS+++L
Sbjct: 32 EEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLE 778
+ + +++F F+Q A Q++LE
Sbjct: 92 NLQSLFQLYFHSFIQIVQASAGQFQLE 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,700,783
Number of extensions: 1701358
Number of successful extensions: 5414
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 5331
Number of HSP's successfully gapped: 65
Length of query: 588
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,737,052
Effective search space: 7073784960
Effective search space used: 7073784960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998996.1| T-cell surface glycoprotein CD1a precursor [Sus... 662 0.0
Alignment gi|NP_001090960.1| CD1B antigen [Sus scrofa]. 366 e-101
Alignment gi|NP_001090961.1| CD1E antigen [Sus scrofa]. 330 1e-90
Alignment gi|NP_001096150.1| antigen-presenting glycoprotein CD1d [Sus sc... 321 7e-88
Alignment gi|XP_003130402.1| PREDICTED: major histocompatibility complex ... 80 4e-15
Alignment gi|XP_003357614.1| PREDICTED: major histocompatibility complex ... 80 4e-15
Alignment gi|XP_001928005.3| PREDICTED: hereditary hemochromatosis protei... 72 1e-12
Alignment gi|XP_001926657.3| PREDICTED: hereditary hemochromatosis protei... 72 1e-12
Alignment gi|XP_003124355.2| PREDICTED: zinc-alpha-2-glycoprotein-like [S... 70 4e-12
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 69 1e-11
>ref|NP_998996.1| T-cell surface glycoprotein CD1a precursor [Sus scrofa].
Length = 339
Score = 662 bits (1708), Expect = 0.0
Identities = 312/326 (95%), Positives = 312/326 (95%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK
Sbjct: 14 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR
Sbjct: 74 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
IAYQGSDFASFQ NSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD
Sbjct: 134 IAYQGSDFASFQNNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMR EQEQPGTQQGDI
Sbjct: 194 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRDEQEQPGTQQGDI 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXX 1390
LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW
Sbjct: 254 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGWILLAVIVPLV 313
Query: 1391 XXTGLAFWHRKHWKHCDPSSALHRLE 1468
TGLAFWHRKHWKHCDPSSALHRLE
Sbjct: 314 LLTGLAFWHRKHWKHCDPSSALHRLE 339
>ref|NP_001090960.1| CD1B antigen [Sus scrofa].
Length = 333
Score = 366 bits (939), Expect = e-101
Identities = 173/316 (54%), Positives = 222/316 (70%), Gaps = 1/316 (0%)
Frame = +2
Query: 491 PGGDSEEGFQEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSK 670
PGGDSE+ Q P S+ +I IS++ N +W + S WLG+LQ H + S I+ +PWSK
Sbjct: 14 PGGDSEDAVQGPTSYHVIQISTYANSTWAQNQGSGWLGDLQIHGWDSDSGTAIFLKPWSK 73
Query: 671 GNFSREDLMESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVR 850
GNFS E++ E +LR++ + F + + A +++LEYPF +Q GC+L+ G+ F+R
Sbjct: 74 GNFSNEEVTEVVDLLRVYLIGFTREVQDKAKEFQLEYPFVIQGTAGCELHPGKAISSFLR 133
Query: 851 IAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLD 1030
A G DF S + N +P+P+GG++AQ C L YQG L+II LLS+TCPR++LG+LD
Sbjct: 134 GALGGLDFVSLKNNLCVPAPEGGSKAQQFCALIIQYQGILDIIETLLSETCPRYLLGVLD 193
Query: 1031 AGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDI 1210
AGKA+LQRQV+PEAWLSSGP P PG L+LVCHVSGFYPKP+WVMWMRGEQEQP TQ+GDI
Sbjct: 194 AGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPSTQRGDI 253
Query: 1211 LPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWEQHSSVGW-XXXXXXXXX 1387
LP+ADGTWY RVTLDV AGE SGLSCRVKHSSLG QDIILYW +S+
Sbjct: 254 LPHADGTWYFRVTLDVVAGEVSGLSCRVKHSSLGDQDIILYWGHPTSITLIVLAIIVPFL 313
Query: 1388 XXXTGLAFWHRKHWKH 1435
LA W+ + W +
Sbjct: 314 ILLICLALWYWRRWSY 329
>ref|NP_001090961.1| CD1E antigen [Sus scrofa].
Length = 324
Score = 330 bits (847), Expect = 1e-90
Identities = 158/273 (57%), Positives = 199/273 (72%)
Frame = +2
Query: 518 QEPISFQIIWISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLM 697
+EP+SF+I+ ISSF N SW S WLGELQTH + + + PW++GNFS+E+L
Sbjct: 32 EEPLSFRILQISSFANHSWVCTHGSGWLGELQTHSWDNVLGTIRFLLPWAQGNFSKEELK 91
Query: 698 ESEHILRMFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFA 877
+ L+++F F Q +SQ + EYPF++Q++ GC + S F AYQGSDF
Sbjct: 92 NIQAFLKLYFHSFPQEVQAFSSQLQFEYPFELQLSLGCLSRPVKASESFFNGAYQGSDFL 151
Query: 878 SFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQ 1057
SFQ NSW PS G++AQ C + N Y+ EI+ L D PRF+ GLL AGK++L+RQ
Sbjct: 152 SFQGNSWTPSLGAGSQAQNACTVLNHYRVIKEIVEVALYDIRPRFLAGLLQAGKSELERQ 211
Query: 1058 VRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWY 1237
V+PEAWLS GP+P PG L+L+CH+SGF+PKP+WVMWMRGEQEQ TQ+GDILP+ADGTWY
Sbjct: 212 VKPEAWLSKGPSPGPGRLLLICHISGFHPKPVWVMWMRGEQEQQATQRGDILPHADGTWY 271
Query: 1238 LRVTLDVAAGEASGLSCRVKHSSLGGQDIILYW 1336
LRVTLDVAAGEA+GLSCRVKHSSLGG DIILYW
Sbjct: 272 LRVTLDVAAGEATGLSCRVKHSSLGGHDIILYW 304
>ref|NP_001096150.1| antigen-presenting glycoprotein CD1d [Sus scrofa].
Length = 341
Score = 321 bits (823), Expect = 7e-88
Identities = 152/292 (52%), Positives = 194/292 (66%)
Frame = +2
Query: 548 ISSFYNRSWEEEVCSAWLGELQTHRREGKSDIVIYRQPWSKGNFSREDLMESEHILRMFF 727
ISSF N SW W+GELQ + SD +++ +PWS+G S + + +HI + +
Sbjct: 42 ISSFANSSWTRTDGLGWVGELQAYTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYR 101
Query: 728 VRFVQAFFNHASQWKLEYPFDVQIAGGCDLYHGETSVGFVRIAYQGSDFASFQKNSWLPS 907
F + +YPF++QI+ GC++ G +S F+ A+QG+D SFQ SW+ +
Sbjct: 102 SSFTRDIREFVKMLGSDYPFEIQISAGCEVLSGNSSESFLHSAFQGTDIMSFQGTSWVSA 161
Query: 908 PKGGTRAQLVCKLFNLYQGTLEIIHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSG 1087
P Q VC++ N QGT E + LL D CP+FV G+L+ GK++L++QV+PEAWLSSG
Sbjct: 162 PDAPPWMQRVCRVLNEDQGTKETVQWLLYDICPQFVRGVLETGKSELEKQVKPEAWLSSG 221
Query: 1088 PNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAG 1267
P P PG L+LVCHVSGFYPKP+WVMWMRGEQEQPGTQQGDILP+ADGTWYLRVTLDVAAG
Sbjct: 222 PTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPGTQQGDILPHADGTWYLRVTLDVAAG 281
Query: 1268 EASGLSCRVKHSSLGGQDIILYWEQHSSVGWXXXXXXXXXXXXTGLAFWHRK 1423
EASGLSCRVKHSSLG QDIILYW+ + AFW R+
Sbjct: 282 EASGLSCRVKHSSLGDQDIILYWDHSHVLVIVLSVLAFILVLGGSFAFWFRR 333
>ref|XP_003130402.1| PREDICTED: major histocompatibility complex class I-related gene
protein-like isoform 1 [Sus scrofa].
Length = 337
Score = 80.1 bits (196), Expect = 4e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 9/225 (4%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILRMFFVRF------VQAFFNHASQWKLEYPFDVQIAGGCD 814
R PW N + +LR + F +Q +NH+ + GC+
Sbjct: 61 RAPWMAENLEPDHWERYTQLLRGWQQTFKAELKQLQRHYNHSGLHTYQRMI------GCE 114
Query: 815 LYHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKL 988
L ++ GF++ AY G DF F K+ SW+ A + + + L+
Sbjct: 115 LLEDGSTTGFLQYAYDGQDFIIFNKDTLSWMAVDNV---AHITKQAWEANWHELQYQKNW 171
Query: 989 LSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWM 1168
L C ++ L+ GK LQR P + PG L C GFYP I + WM
Sbjct: 172 LEQECVAWLRRFLEYGKDTLQRTEPPLVRVYH-KETVPGITTLYCRAHGFYPPEISMTWM 230
Query: 1169 RGEQEQPGTQQ-GDILPNADGTWYLRVTLDVAAGEASGLSCRVKH 1300
+ E+E GDILP+ DGT+ V++++ + + SC VKH
Sbjct: 231 KNEEEMVQEMDYGDILPSGDGTYQTWVSVELDSQSSDVYSCHVKH 275
>ref|XP_003357614.1| PREDICTED: major histocompatibility complex class I-related gene
protein-like isoform 1 [Sus scrofa].
Length = 337
Score = 80.1 bits (196), Expect = 4e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 9/225 (4%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILRMFFVRF------VQAFFNHASQWKLEYPFDVQIAGGCD 814
R PW N + +LR + F +Q +NH+ + GC+
Sbjct: 61 RAPWMAENLEPDHWERYTQLLRGWQQTFKAELKQLQRHYNHSGLHTYQRMI------GCE 114
Query: 815 LYHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKL 988
L ++ GF++ AY G DF F K+ SW+ A + + + L+
Sbjct: 115 LLEDGSTTGFLQYAYDGQDFIIFNKDTLSWMAVDNV---AHITKQAWEANWHELQYQKNW 171
Query: 989 LSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWM 1168
L C ++ L+ GK LQR P + PG L C GFYP I + WM
Sbjct: 172 LEQECVAWLRRFLEYGKDTLQRTEPPLVRVYH-KETVPGITTLYCRAHGFYPPEISMTWM 230
Query: 1169 RGEQEQPGTQQ-GDILPNADGTWYLRVTLDVAAGEASGLSCRVKH 1300
+ E+E GDILP+ DGT+ V++++ + + SC VKH
Sbjct: 231 KNEEEMVQEMDYGDILPSGDGTYQTWVSVELDSQSSDVYSCHVKH 275
>ref|XP_001928005.3| PREDICTED: hereditary hemochromatosis protein homolog [Sus scrofa].
Length = 347
Score = 71.6 bits (174), Expect = 1e-12
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 6/235 (2%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILR----MFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLY 820
R PW G S + ++ L+ MF V F NH K +Q+ GC++
Sbjct: 71 RAPWLSGKASNQLWLQLSQSLKGWDHMFTVDFWTIMDNHNYSKKSH---TLQVILGCEVQ 127
Query: 821 HGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDT 1000
++ GF + Y G D F + L RA + + + + L
Sbjct: 128 ADNSTRGFWKYGYDGQDHLEFHPET-LDWGAAEPRAWATKLEWEVSKIRAKQNRAYLERD 186
Query: 1001 CPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQ 1180
CP + LL+ G+ L +Q P ++ + + L C FYP+ I + W++ Q
Sbjct: 187 CPEQLRRLLELGRGALDQQAPPLVKVTH--HVASAVTTLRCQALNFYPQNITMRWLKDRQ 244
Query: 1181 --EQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
+ + D+LPN DGT+ V L V GE SC+V+H L Q + WE
Sbjct: 245 PLDAKDIEPRDVLPNGDGTYQSWVALVVLPGEEQRYSCQVEHPGL-DQPLTARWE 298
>ref|XP_001926657.3| PREDICTED: hereditary hemochromatosis protein homolog [Sus scrofa].
Length = 347
Score = 71.6 bits (174), Expect = 1e-12
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 6/235 (2%)
Frame = +2
Query: 653 RQPWSKGNFSREDLMESEHILR----MFFVRFVQAFFNHASQWKLEYPFDVQIAGGCDLY 820
R PW G S + ++ L+ MF V F NH K +Q+ GC++
Sbjct: 71 RAPWLSGKASNQLWLQLSQSLKGWDHMFTVDFWTIMDNHNYSKKSH---TLQVILGCEVQ 127
Query: 821 HGETSVGFVRIAYQGSDFASFQKNSWLPSPKGGTRAQLVCKLFNLYQGTLEIIHKLLSDT 1000
++ GF + Y G D F + L RA + + + + L
Sbjct: 128 ADNSTRGFWKYGYDGQDHLEFHPET-LDWGAAEPRAWATKLEWEVSKIRAKQNRAYLERD 186
Query: 1001 CPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWVMWMRGEQ 1180
CP + LL+ G+ L +Q P ++ + + L C FYP+ I + W++ Q
Sbjct: 187 CPEQLRRLLELGRGALDQQAPPLVKVTH--HVASAVTTLRCQALNFYPQNITMRWLKDRQ 244
Query: 1181 --EQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYWE 1339
+ + D+LPN DGT+ V L V GE SC+V+H L Q + WE
Sbjct: 245 PLDAKDIEPRDVLPNGDGTYQSWVALVVLPGEEQRYSCQVEHPGL-DQPLTARWE 298
>ref|XP_003124355.2| PREDICTED: zinc-alpha-2-glycoprotein-like [Sus scrofa].
Length = 309
Score = 70.1 bits (170), Expect = 4e-12
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 2/179 (1%)
Frame = +2
Query: 806 GCDLYHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEII 979
GC+L + + F R AY G DF F K +W+ +L + +Y ++
Sbjct: 119 GCELRNDQRQAAFWRYAYDGRDFIEFNKEIPAWVALDPAAVNTKLKWEAEAVY---VQRA 175
Query: 980 HKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIWV 1159
L + CP + L+ G+ L +Q P ++ P L C FYP I +
Sbjct: 176 KAYLEEECPGMLRRYLEHGRGHLDQQAPPSVSITRHVAPGQNGT-LKCLAYDFYPGRIGL 234
Query: 1160 MWMRGEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILYW 1336
W Q GD+LP+ +G++ V + V + + SC V+HSSL Q + + W
Sbjct: 235 RWTGAGGAQEAESGGDVLPSGNGSYQSWVVVGVPPQDRAPHSCHVEHSSL-AQPLTVPW 292
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 68.6 bits (166), Expect = 1e-11
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 4/182 (2%)
Frame = +2
Query: 806 GCDL-YHGETSVGFVRIAYQGSDFASFQKN--SWLPSPKGGTRAQLVCKLFNLYQGTLEI 976
GCD+ G G+ + +Y G D+ ++ SW T AQ++ + + +G E
Sbjct: 149 GCDVGSEGRILRGYEQFSYDGDDYIVLNEDLRSWTAI---STVAQIIRRKWEA-EGVAEQ 204
Query: 977 IHKLLSDTCPRFVLGLLDAGKADLQRQVRPEAWLSSGPNPSPGHLMLVCHVSGFYPKPIW 1156
L C ++ L+ GK LQR V P+ ++ P + L C GFYPK I
Sbjct: 205 YRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTRHPFYD-NKVTLRCWALGFYPKEIS 263
Query: 1157 VMWMR-GEQEQPGTQQGDILPNADGTWYLRVTLDVAAGEASGLSCRVKHSSLGGQDIILY 1333
+ W R GE + + + P+ DGT+ L V +GE +C+V+H L + + L
Sbjct: 264 LTWQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQSYTCQVQHEGL-QEPLTLR 322
Query: 1334 WE 1339
WE
Sbjct: 323 WE 324
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,897,989
Number of extensions: 1179768
Number of successful extensions: 3344
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3308
Number of HSP's successfully gapped: 28
Length of query: 588
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 484
Effective length of database: 8,754,644
Effective search space: 4237247696
Effective search space used: 4237247696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007564
(1764 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 569 e-159
>Sscrofa_Chr04
|| Length = 143465943
Score = 569 bits (287), Expect = e-159
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 1 ggacagagtgacagaaaaaagcaggggcatgaggacattaaatagggtgctggagagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905535 ggacagagtgacagaaaaaagcaggggcatgaggacattaaatagggtgctggagagaca 99905594
Query: 61 tttagtttcatgctttgatttatgaatgagaaaaaaggccttataggtaaattggctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905595 tttagtttcatgctttgatttatgaatgagaaaaaaggccttataggtaaattggctttt 99905654
Query: 121 caacactatatgagacatggtccatagcagataaacttggggaaggtgaacaggatagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905655 caacactatatgagacatggtccatagcagataaacttggggaaggtgaacaggatagtc 99905714
Query: 181 actggtgacaaggagagaagttggaagctagagaagagagtcagaattggagggaacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905715 actggtgacaaggagagaagttggaagctagagaagagagtcagaattggagggaacatg 99905774
Query: 241 agcatctgagtaggtggtccagggtttagggaaagaacacattttca 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905775 agcatctgagtaggtggtccagggtttagggaaagaacacattttca 99905821
Score = 567 bits (286), Expect = e-159
Identities = 292/294 (99%)
Strand = Plus / Plus
Query: 1428 ggaaacactgtgacccttcaagtgctcttcaccgcttggaatgagatcccagccacccag 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99908677 ggaaacactgtgacccttcaagtgctcttcaccgcttggaatgagatcccagccacccag 99908736
Query: 1488 gagctcagggatgtatctaaacacagcacagtcactccatcctttcaattctccttgtac 1547
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 99908737 gagctcagggatgtatctaaacacagcacagtcactccatcttttcaattctccttgtac 99908796
Query: 1548 agctttagttattgtttatttttgcttaatgatcaatagtcaacataagctaaatgtgat 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99908797 agctttagttattgtttatttttgcttaatgatcaatagtcaacataagctaaatgtgat 99908856
Query: 1608 tttgcaggatttgttgttctaacctgcattatgggacttgaaaattcaaaatttaaactg 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99908857 tttgcaggatttgttgttctaacctgcattatgggacttgaaaattcaaaatttaaactg 99908916
Query: 1668 tctatggcatgatgtcctagggaactttatgtcttcaaagtcaagtagattatc 1721
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 99908917 tctatggcatgatgtcctagggacctttatgtcttcaaagtcaagtagattatc 99908970
Score = 553 bits (279), Expect = e-154
Identities = 279/279 (100%)
Strand = Plus / Plus
Query: 780 atccctttgatgtacagatagcaggaggctgtgacctgtaccatggtgaaacctcagtag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907297 atccctttgatgtacagatagcaggaggctgtgacctgtaccatggtgaaacctcagtag 99907356
Query: 840 gctttgtgaggattgcttatcaaggatccgactttgccagcttccagaagaattcatggt 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907357 gctttgtgaggattgcttatcaaggatccgactttgccagcttccagaagaattcatggt 99907416
Query: 900 tgccctctccaaaagggggaactagagctcagcttgtctgcaaactgttcaatttgtacc 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907417 tgccctctccaaaagggggaactagagctcagcttgtctgcaaactgttcaatttgtacc 99907476
Query: 960 aaggcaccctggaaataatacacaagttgctcagtgacacttgcccacgtttcgtcttgg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907477 aaggcaccctggaaataatacacaagttgctcagtgacacttgcccacgtttcgtcttgg 99907536
Query: 1020 gtcttcttgatgcagggaaggcagatctccagcgacaag 1058
|||||||||||||||||||||||||||||||||||||||
Sbjct: 99907537 gtcttcttgatgcagggaaggcagatctccagcgacaag 99907575
Score = 549 bits (277), Expect = e-153
Identities = 280/281 (99%)
Strand = Plus / Plus
Query: 1057 agtaagacctgaggcctggctgtcctctggccccaatcccagtcctggccatctgatgct 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907793 agtaagacctgaggcctggctgtcctctggccccaatcccagtcctggccatctgatgct 99907852
Query: 1117 ggtttgtcacgtctctggcttctacccaaaacctatttgggtgatgtggatgcggggtga 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 99907853 ggtttgtcacgtctctggcttctacccaaaacctatttgggtgatgtggatgcgggatga 99907912
Query: 1177 gcaggagcagcctggcactcagcaaggtgacatcctgcccaatgcggatgggacgtggta 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907913 gcaggagcagcctggcactcagcaaggtgacatcctgcccaatgcggatgggacgtggta 99907972
Query: 1237 tcttcgagtaaccctggatgtggcggctggggaggcatctggcttgagttgccgagtgaa 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99907973 tcttcgagtaaccctggatgtggcggctggggaggcatctggcttgagttgccgagtgaa 99908032
Query: 1297 gcacagcagcctaggaggccaggacatcatcctttactggg 1337
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 99908033 gcacagcagcctaggaggccaggacatcatcctttactggg 99908073
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Plus
Query: 512 ggcttccaggagccaatctccttccaaatcatctggatctcatccttttacaaccgttcc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99906351 ggcttccaggagccaatctccttccaaatcatctggatctcatccttttacaaccgttcc 99906410
Query: 572 tgggaagaagaggtttgttcagcttggttgggagagttgcagactcacagacgtgaaggg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99906411 tgggaagaagaggtttgttcagcttggttgggagagttgcagactcacagacgtgaaggg 99906470
Query: 632 aaatctgacatagtcatttaccggcagccttggtccaagggcaacttcagcagggaggat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99906471 aaatctgacatagtcatttaccggcagccttggtccaagggcaacttcagcagggaggat 99906530
Query: 692 ctgatggaatcggaacatatacttcgtatgtttttcgttagatttgttcaggcgtttttc 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99906531 ctgatggaatcggaacatatacttcgtatgtttttcgttagatttgttcaggcgtttttc 99906590
Query: 752 aatcatgccagtcaatggaagcttgaat 779
||||||||||||||||||||||||||||
Sbjct: 99906591 aatcatgccagtcaatggaagcttgaat 99906618
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 314 aatcccacagagtgactaaagggaaggtttgtctgttggtaggagaaggaagtcagaata 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905848 aatcccacagagtgactaaagggaaggtttgtctgttggtaggagaaggaagtcagaata 99905907
Query: 374 gaagttttgtggggtaggtttgtttagaacagaaatcaaagacaaacttttctgagagga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905908 gaagttttgtggggtaggtttgtttagaacagaaatcaaagacaaacttttctgagagga 99905967
Query: 434 agaacatctgcaaatgaaatgctgtttctgcaacttccattgctcctggttctcctccca 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99905968 agaacatctgcaaatgaaatgctgtttctgcaacttccattgctcctggttctcctccca 99906027
Query: 494 ggtggtgacagtgaagaggg 513
||||||||||||||||||||
Sbjct: 99906028 ggtggtgacagtgaagaggg 99906047
Score = 345 bits (174), Expect = 5e-92
Identities = 249/274 (90%)
Strand = Plus / Minus
Query: 1064 cctgaggcctggctgtcctctggccccaatcccagtcctggccatctgatgctggtttgt 1123
||||| || ||||||||| |||||||| ||| | ||||||| |||| |||| || ||
Sbjct: 100439777 cctgaagcttggctgtccagtggccccactcctggacctggccgtctgctgctcgtctgc 100439718
Query: 1124 cacgtctctggcttctacccaaaacctatttgggtgatgtggatgcggggtgagcaggag 1183
|||||||| || |||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 100439717 cacgtctcaggattctaccccaaacccgtgtgggtgatgtggatgcggggtgagcaggag 100439658
Query: 1184 cagcctggcactcagcaaggtgacatcctgcccaatgcggatgggacgtggtatcttcga 1243
||||||||||||||||||||||||||||| ||| |||| || |||||||||||||| |||
Sbjct: 100439657 cagcctggcactcagcaaggtgacatcctcccccatgcagacgggacgtggtatctccga 100439598
Query: 1244 gtaaccctggatgtggcggctggggaggcatctggcttgagttgccgagtgaagcacagc 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100439597 gtaaccctggatgtggcggctggggaggcatctggcttgagttgccgagtgaagcacagc 100439538
Query: 1304 agcctaggaggccaggacatcatcctttactggg 1337
|||||||||| |||||||||||||||||||||||
Sbjct: 100439537 agcctaggagaccaggacatcatcctttactggg 100439504
Score = 297 bits (150), Expect = 1e-77
Identities = 243/274 (88%)
Strand = Plus / Minus
Query: 1064 cctgaggcctggctgtcctctggccccaatcccagtcctggccatctgatgctggtttgt 1123
||||| || ||||||||| |||||||| ||| | ||||| | |||| |||| || ||
Sbjct: 100380531 cctgaagcgtggctgtccagtggccccactcctggacctggtcgtctgctgctcgtctgc 100380472
Query: 1124 cacgtctctggcttctacccaaaacctatttgggtgatgtggatgcggggtgagcaggag 1183
|||||||| || |||||||| ||||| | |||||||||||||||||||||||||| |||
Sbjct: 100380471 cacgtctcaggattctaccccaaacccgtgtgggtgatgtggatgcggggtgagcaagag 100380412
Query: 1184 cagcctggcactcagcaaggtgacatcctgcccaatgcggatgggacgtggtatcttcga 1243
||||| ||||||||| |||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 100380411 cagcccagcactcagcgaggtgacatcctgccccatgcagatgggacgtggtatttccga 100380352
Query: 1244 gtaaccctggatgtggcggctggggaggcatctggcttgagttgccgagtgaagcacagc 1303
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 100380351 gtaaccctggatgtggtggctggggaggtatctggcttgagttgccgagtgaagcacagc 100380292
Query: 1304 agcctaggaggccaggacatcatcctttactggg 1337
|||||||||| |||||||||||||||||||||||
Sbjct: 100380291 agcctaggagaccaggacatcatcctttactggg 100380258
Score = 204 bits (103), Expect = 1e-49
Identities = 166/187 (88%)
Strand = Plus / Minus
Query: 324 agtgactaaagggaaggtttgtctgttggtaggagaaggaagtcagaatagaagttttgt 383
|||||| |||||||| | |||||| | ||||||||| |||| || |||||| || || |
Sbjct: 100412702 agtgacgaaagggaaagattgtctatcggtaggagatggaatccaaaatagaggtattat 100412643
Query: 384 ggggtaggtttgtttagaacagaaatcaaagacaaacttttctgagaggaagaacatctg 443
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 100412642 agggtaggtttgtttagaacagaaatcaaagaccaaattttctgagagaaagaacatctg 100412583
Query: 444 caaatgaaatgctgtttctgcaacttccattgctcctggttctcctcccaggtggtgaca 503
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 100412582 caaacaaaatgctgtttctgcaacttccattgttcctggttttcctcccaggtggtgaca 100412523
Query: 504 gtgaaga 510
||||||
Sbjct: 100412522 atgaaga 100412516
Score = 202 bits (102), Expect = 5e-49
Identities = 204/238 (85%)
Strand = Plus / Minus
Query: 1100 cctggccatctgatgctggtttgtcacgtctctggcttctacccaaaacctatttgggtg 1159
||||||| |||| ||||| | || ||| |||| ||||| | ||||| ||| | ||||||
Sbjct: 100358842 cctggccgtctgctgctgatatgccacatctccggctttcatccaaagcctgtgtgggtg 100358783
Query: 1160 atgtggatgcggggtgagcaggagcagcctggcactcagcaaggtgacatcctgcccaat 1219
|||||||||||||||||||||||||| | | |||||||| |||||||||| ||||| ||
Sbjct: 100358782 atgtggatgcggggtgagcaggagcaacaggccactcagcgaggtgacatcttgccccat 100358723
Query: 1220 gcggatgggacgtggtatcttcgagtaaccctggatgtggcggctggggaggcatctggc 1279
|| || ||||| ||||| || |||||||||||||||||||| |||||||||||| | ||
Sbjct: 100358722 gcagacgggacatggtacctccgagtaaccctggatgtggcagctggggaggcaaccggt 100358663
Query: 1280 ttgagttgccgagtgaagcacagcagcctaggaggccaggacatcatcctttactggg 1337
|||||||||| |||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 100358662 ctgagttgccgggtgaagcacagcagcctaggaggccatgatatcatcctctactggg 100358605
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1337 gaacagcacagctccgtgggctggatcttattggcagtgattgtgcccctggtgctcctg 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99908410 gaacagcacagctccgtgggctggatcttattggcagtgattgtgcccctggtgctcctg 99908469
Query: 1397 acaggtcttgcattttggcataggaagcactgg 1429
|||||||||||||||||||||||||||||||||
Sbjct: 99908470 acaggtcttgcattttggcataggaagcactgg 99908502
Score = 161 bits (81), Expect = 2e-36
Identities = 138/157 (87%)
Strand = Plus / Minus
Query: 1059 taagacctgaggcctggctgtcctctggccccaatcccagtcctggccatctgatgctgg 1118
||||||| |||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct: 100410791 taagaccagaggcctggctgtctcttggccgcagtcttggtcctggccatctgatgctgt 100410732
Query: 1119 tttgtcacgtctctggcttctacccaaaacctatttgggtgatgtggatgcggggtgagc 1178
|||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 100410731 tttgtcacatctctggcttctacccaaagcctatttgggtgatgtggatgcagggtgagt 100410672
Query: 1179 aggagcagcctggcactcagcaaggtgacatcctgcc 1215
||||||||| ||||||||| | |||||||||||||
Sbjct: 100410671 aggagcagcagggcactcagagaagtgacatcctgcc 100410635
Score = 153 bits (77), Expect = 4e-34
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 1339 acagcacagctccgtgggctggatcttattggcagtgattgtgcccctggtgctcctgac 1398
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 100410200 acagcacagctccgtgggctggatcttcttggcagtgattgtgtccctggtgctcctgac 100410141
Query: 1399 aggtcttgcattttggcataggaag 1423
|||||||||||||||||||||||||
Sbjct: 100410140 aggtcttgcattttggcataggaag 100410116
Score = 131 bits (66), Expect = 1e-27
Identities = 177/214 (82%)
Strand = Plus / Minus
Query: 845 gtgaggattgcttatcaaggatccgactttgccagcttccagaagaattcatggttgccc 904
|||||| ||||||||| |||||| || || ||||| ||||| |||||||||||||||
Sbjct: 100411190 gtgagggttgcttatcgaggatcggagttgctgagctttcagaacaattcatggttgccc 100411131
Query: 905 tctccaaaagggggaactagagctcagcttgtctgcaaactgttcaatttgtaccaaggc 964
|||||||| || ||||| || ||||||||| || || ||| || ||||| | || |
Sbjct: 100411130 tctccaaagggtggaacaagggctcagcttatcagcgtactactcgatttgaagtgagtc 100411071
Query: 965 accctggaaataatacacaagttgctcagtgacacttgcccacgtttcgtcttgggtctt 1024
||| ||||||||||||| | | ||||||||||| |||||| ||||| |||||||||||
Sbjct: 100411070 accttggaaataatacataggacactcagtgacacctgcccatgtttcctcttgggtctt 100411011
Query: 1025 cttgatgcagggaaggcagatctccagcgacaag 1058
|||||||| |||||||||||||||||| ||||||
Sbjct: 100411010 cttgatgcggggaaggcagatctccagagacaag 100410977
Score = 91.7 bits (46), Expect = 1e-15
Identities = 127/154 (82%)
Strand = Plus / Minus
Query: 133 agacatggtccatagcagataaacttggggaaggtgaacaggatagtcactggtgacaag 192
|||| ||||||| ||| | |||||| ||||||| |||||| || | |||||||||||
Sbjct: 100412866 agacttggtccacagccgttaaactgggggaagccgaacagaatggaggctggtgacaag 100412807
Query: 193 gagagaagttggaagctagagaagagagtcagaattggagggaacatgagcatctgagta 252
|||||||| ||| ||| || || ||||||||||| | ||||| | |||||||||||| ||
Sbjct: 100412806 gagagaagctggcagccagtgaggagagtcagaactagaggggaaatgagcatctgaata 100412747
Query: 253 ggtggtccagggtttagggaaagaacacattttc 286
|| | |||||||||||||||| || || ||||||
Sbjct: 100412746 ggggatccagggtttagggaaggagcagattttc 100412713
Score = 73.8 bits (37), Expect = 3e-10
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1113 tgctggtttgtcacgtctctggcttctacccaaaacctatttgggtgatgtggatgcggg 1172
||||||||||||| |||||||||||||||||||| | |||||||||||||| ||| ||
Sbjct: 99932367 tgctggtttgtcatgtctctggcttctacccaaagcacatttgggtgatgtgaatgtgga 99932426
Query: 1173 gtgagcagg 1181
|||| ||||
Sbjct: 99932427 gtgaacagg 99932435
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 56,761,974
Number of extensions: 466
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 18
Length of query: 1764
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1742
Effective length of database: 2,808,408,574
Effective search space: 4892247735908
Effective search space used: 4892247735908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)