Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776331.2| decorin precursor [Bos taurus]. 595 e-170
Alignment gi|NP_847888.2| biglycan precursor [Bos taurus]. 330 2e-90
Alignment gi|NP_001029481.1| asporin precursor [Bos taurus]. 300 2e-81
Alignment gi|NP_776859.1| prolargin precursor [Bos taurus]. 141 2e-33
Alignment gi|NP_001029769.1| extracellular matrix protein 2 precursor [Bo... 132 7e-31
Alignment gi|NP_776359.1| lumican precursor [Bos taurus]. 120 4e-27
Alignment gi|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus]. 119 8e-27
Alignment gi|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus]. 119 8e-27
Alignment gi|NP_001179156.1| podocan [Bos taurus]. 117 3e-26
Alignment gi|XP_002686445.1| PREDICTED: podocan [Bos taurus]. 117 3e-26
>ref|NP_776331.2| decorin precursor [Bos taurus].
Length = 360
Score = 595 bits (1535), Expect = e-170
Identities = 294/329 (89%), Positives = 305/329 (92%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 574
MKATIIFLL+AQVSWAGPFQQKGLFDFMLEDEASGIGPE+ FPEVPE+EP+GP+CPFRCQ
Sbjct: 1 MKATIIFLLVAQVSWAGPFQQKGLFDFMLEDEASGIGPEEHFPEVPEIEPMGPVCPFRCQ 60
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGL+KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK
Sbjct: 61 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 120
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK+VFNGLNQMIVV
Sbjct: 121 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 180
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI+KVD
Sbjct: 181 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 240
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
FNSIS VDNGSLANTPHLRELHLNNNKL KVPGGLA+HKYIQVVYL
Sbjct: 241 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 300
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
HNNNISA+GSNDFCPPGY K+ SGVS
Sbjct: 301 HNNNISAIGSNDFCPPGYNTKKASYSGVS 329
>ref|NP_847888.2| biglycan precursor [Bos taurus].
Length = 369
Score = 330 bits (845), Expect = 2e-90
Identities = 169/329 (51%), Positives = 221/329 (67%), Gaps = 9/329 (2%)
Frame = +2
Query: 422 LAQVSWAGPFQQKGLFDFMLED--------EASGIGPEDRFPEVPELEPL-GPMCPFRCQ 574
L +S A PF+QK +DF L+D EASG P++ L P MCPF C
Sbjct: 10 LLALSQALPFEQKAFWDFTLDDGLPMLNDEEASGAETTSGIPDLDSLPPTYSAMCPFGCH 69
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGL VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NNKISK
Sbjct: 70 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 129
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I AF+PL KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +
Sbjct: 130 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 189
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
E+G NPL++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++
Sbjct: 190 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 248
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
N I ++NGSL+ P LRELHL+NNKL++VP GL + K +QVVYL
Sbjct: 249 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 308
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
H NNI+ VG NDFCP G+ KR +G+S
Sbjct: 309 HTNNITKVGVNDFCPVGFGVKRAYYNGIS 337
>ref|NP_001029481.1| asporin precursor [Bos taurus].
Length = 370
Score = 300 bits (769), Expect = 2e-81
Identities = 152/306 (49%), Positives = 203/306 (66%), Gaps = 5/306 (1%)
Frame = +2
Query: 479 LEDEASGIGPEDRFPEVPELEPLGPM-----CPFRCQCHLRVVQCSDLGLDKVPKDLPPD 643
+EDE FP + P P CPF CQC+ RVV CSDLGL VP ++P D
Sbjct: 34 MEDEGDSDADNSLFPTREPINPFFPFDLFSTCPFGCQCYSRVVHCSDLGLSSVPSNIPFD 93
Query: 644 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 823
T ++DLQNNKI EIK+ DFK L +L+ LIL NNK++KI P AF KL RLYLS NQL
Sbjct: 94 TRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLS 153
Query: 824 ELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 1003
E+P +PK+L ELR+H+N++ K++KA F G+N + V+E+ NPL ++GIE GAF+G+ +
Sbjct: 154 EIPLNLPKSLAELRIHDNKVKKIQKATFKGMNALHVLEMSANPLDNNGIEPGAFEGV-TV 212
Query: 1004 SYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDN 1183
+IRIA+ +T+IP+ LP +L ELHLD NKIS V+ N I+ ++N
Sbjct: 213 FHIRIAEAKLTSIPKELPSTLLELHLDYNKISVVELEDFKRYKDLQRLGLGNNRITDIEN 272
Query: 1184 GSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRL 1363
GSLAN P +RE+HL NNKL KVP GL E KY+Q+++LH+N+I+ VG NDFCP K+
Sbjct: 273 GSLANIPRVREIHLENNKLKKVPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKS 332
Query: 1364 LISGVS 1381
L S +S
Sbjct: 333 LYSAIS 338
>ref|NP_776859.1| prolargin precursor [Bos taurus].
Length = 381
Score = 141 bits (355), Expect = 2e-33
Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 7/285 (2%)
Frame = +2
Query: 506 PEDRFPEVPELEP-LGPMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
P D P +P P + P CP C C + C L KVP +P L LQNN
Sbjct: 54 PTDLPPPLPPGPPSVFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPSRIHYLYLQNNF 112
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 853
ITE+ FKN L + L NN+I K+ L L LYL KNQL+E+P +P+ L
Sbjct: 113 ITELPVESFKNATGLRWINLDNNRIRKVDQRVLEKLPSLVFLYLEKNQLEEVPAALPRNL 172
Query: 854 QELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 1033
++LR+ +N+I+++ VF+ L +++++L N L + FQG+K L + +A +
Sbjct: 173 EQLRLSQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNTL 232
Query: 1034 TTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNG---SLANTP 1204
+P +P ++ +L+LD N+I + +N +S D G + N
Sbjct: 233 RKMPPKVPSAIHQLYLDSNRIEAIPSGYFKGFPNLAFIRLNYNQLS--DRGLPKNSFNIS 290
Query: 1205 HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+L LHL++N+++ VP A ++ +YL+NN+I + CP
Sbjct: 291 NLLVLHLSHNRISSVP---AISSRLEHLYLNNNSIEKINGTQICP 332
>ref|NP_001029769.1| extracellular matrix protein 2 precursor [Bos taurus].
Length = 680
Score = 132 bits (332), Expect = 7e-31
Identities = 87/270 (32%), Positives = 130/270 (48%), Gaps = 4/270 (1%)
Frame = +2
Query: 551 PMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 730
P P C + + C L ++P P+ L+L +N IT I D F L NL L
Sbjct: 295 PSLPSMCSLSYKTISCISADLTQIPPLTAPEITSLELIDNSITSIPDEAFNGLPNLERLD 354
Query: 731 LINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
L N I S I P AF L L RL + N L +P ++P TL+EL+++EN++ + +
Sbjct: 355 LSKNNITSSGIGPKAFKFLKNLMRLNMDGNNLVTIPSELPSTLEELKINENKLQVIDEES 414
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 1084
+ LNQ++ +EL N L + + + AF+ +K LSY+R+ IPQGLP S+ EL+L+
Sbjct: 415 LSDLNQLVTLELEGNNLSETNVNSLAFKPLKSLSYLRLGRNKFRIIPQGLPASIEELYLE 474
Query: 1085 GNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLA--NTPHLRELHLNNNKLNKVPGG 1258
N+I ++ +N I LA N +L + L+ NKL VP
Sbjct: 475 NNQIEEITEISFNHTRKINVIGLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVPSY 534
Query: 1259 LAEHKYIQVVYLHNNNISAVGSNDFCPPGY 1348
L K + + L N I + PGY
Sbjct: 535 LP--KSLVHLVLIGNQIERI-------PGY 555
Score = 100 bits (249), Expect = 3e-21
Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 18/295 (6%)
Frame = +2
Query: 506 PEDRFPEVPELEPL------------GPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTA 649
P++ F +P LE L GP F+ +L + L +P +LP
Sbjct: 340 PDEAFNGLPNLERLDLSKNNITSSGIGPKA-FKFLKNLMRLNMDGNNLVTIPSELPSTLE 398
Query: 650 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLK 823
L + NK+ I + +L L TL L N +S+ ++ AF PL L L L +N+ +
Sbjct: 399 ELKINENKLQVIDEESLSDLNQLVTLELEGNNLSETNVNSLAFKPLKSLSYLRLGRNKFR 458
Query: 824 ELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 1003
+P+ +P +++EL + N+I ++ + FN ++ V+ L N ++ + I A+ + L
Sbjct: 459 IIPQGLPASIEELYLENNQIEEITEISFNHTRKINVIGLRYNKIEENRIAPLAWINQENL 518
Query: 1004 SYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXX-FNSI--ST 1174
I ++ + +P LP SL L L GN+I ++ FN +
Sbjct: 519 ESIDLSYNKLYHVPSYLPKSLVHLVLIGNQIERIPGYVFGHMEPGLEYLYLSFNKLVDDG 578
Query: 1175 VDNGSLANTPH-LRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
+D S H LREL L++N+L +P G+ E K + + L+NN I + C
Sbjct: 579 IDRVSFYGAYHSLRELFLDHNELKSIPPGVQEMKALHFLRLNNNKIRNILPEQIC 633
>ref|NP_776359.1| lumican precursor [Bos taurus].
Length = 342
Score = 120 bits (300), Expect = 4e-27
Identities = 84/268 (31%), Positives = 134/268 (50%), Gaps = 6/268 (2%)
Frame = +2
Query: 551 PMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P C C C + + C +L L VP +PP L L+NN+I I D F+N+ +L
Sbjct: 39 PNCAPECNCPESYPSAMYCDELKLKSVPM-VPPGIKYLYLRNNQIDHIDDKAFENVTDLQ 97
Query: 722 TLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
LIL +N + SKI F+ L +L++L+++ N L E +PK+L +L++ N+I+K+
Sbjct: 98 WLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKL- 156
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
F+GL + + L N LK + + A +G+K L Y+ ++ +T +P GLP SL L
Sbjct: 157 -GSFDGLVNLTFIHLQHNQLKEDAV-SAALKGLKSLEYLDLSFNQMTKLPSGLPVSLLTL 214
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVD-NGSLANTPHLRELHLNNNKLNKVP 1252
+LD NKIS + N ++ G+ N L EL L+ NKL +P
Sbjct: 215 YLDNNKISNIPDEYFKRFSALQYLRLSHNELADSGVPGNSFNVSSLLELDLSYNKLKSIP 274
Query: 1253 GGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
++ ++ YL N + FC
Sbjct: 275 ---TVNENLENYYLEVNELEKFDVKSFC 299
>ref|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 119 bits (297), Expect = 8e-27
Identities = 91/304 (29%), Positives = 143/304 (47%), Gaps = 6/304 (1%)
Frame = +2
Query: 416 LLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPEL-EPLGPMCPFRCQC-HLRV 589
LLL + GP G+ ED+AS FP + E +P CP RC C
Sbjct: 42 LLLLLLLLPGPQPALGM-----EDDAS-------FPHLGESSQPPPRACPPRCSCPRPDT 89
Query: 590 VQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISP 763
V C L L P ++ L LQNN++ E+ + L L TL L NN IS +
Sbjct: 90 VDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNELSRLSGLRTLNLHNNLISSEGLPD 149
Query: 764 GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELG 943
AF L +L+ +Y++ N+L P+ +P++L+ + NE+T++ F + V L
Sbjct: 150 EAFESLTQLQHIYVAHNKLSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLH 209
Query: 944 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXX 1123
N L ++G+ AF+G + ++ + ++ ++ +P LPPSL LHL N ISKV
Sbjct: 210 NNQLSNAGLPPDAFRGSEAVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALS 269
Query: 1124 XXXXXXXXXXXFNSI--STVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLH 1297
N + S +D + + L L L++N+L VP GL + + V++L
Sbjct: 270 RQTHLRELYLQHNQLTDSGLDATTFSKLHRLEYLDLSHNQLAAVPAGLP--RTLAVLHLG 327
Query: 1298 NNNI 1309
N I
Sbjct: 328 RNRI 331
Score = 102 bits (253), Expect = 1e-21
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 4/244 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP + DL N++TEI F L ++ L NN++S + P AF
Sbjct: 168 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 227
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+ L LS NQL +P +P +L+ L + N I+KV + + + + L N L S
Sbjct: 228 AVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 287
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++ F + +L Y+ ++ + +P GLP +L LHL N+I V+
Sbjct: 288 GLDATTFSKLHRLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRY 347
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + G+L L LHL N+L++VP L + ++ + L +N ++A+
Sbjct: 348 LLLQHNQLGATGLPAGALRPLRGLHTLHLYGNRLDRVPQALP--RRLRALVLPHNRVAAL 405
Query: 1319 GSND 1330
G+ D
Sbjct: 406 GARD 409
Score = 84.7 bits (208), Expect = 2e-16
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 2/253 (0%)
Frame = +2
Query: 542 PLGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P G + P R L + LD+VP+ LP L L +N++ + D + L
Sbjct: 361 PAGALRPLR---GLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLA 417
Query: 722 TLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
L L N ++ ++ AF L L L L+ NQL +LP +P L LR+ N++ +
Sbjct: 418 ELNLAYNCLASARVHLRAFRRLRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLE 477
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
GL+Q+ + L N L+ GI G + ++ L + ++ ++ +P LP +L EL
Sbjct: 478 PEPLAGLHQLQELSLAHNRLRVGGIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEEL 537
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPG 1255
HL GN+I V + +TP LR L L N+L+
Sbjct: 538 HLQGNRIGHVGPE------------------------AFLSTPRLRALFLRANRLHMT-- 571
Query: 1256 GLAEHKYIQVVYL 1294
+A ++ +++L
Sbjct: 572 SIAPEAFLGLLHL 584
Score = 62.8 bits (151), Expect = 7e-10
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Frame = +2
Query: 581 LRVVQCSDLG---LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-- 745
LR ++ DL L ++P LP L LQ N++ ++ L L L L +N+
Sbjct: 439 LRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLR 498
Query: 746 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQM 925
+ I PG + L L+ L LS N+L +P +P+ L+EL + N I V F ++
Sbjct: 499 VGGIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGPEAFLSTPRL 558
Query: 926 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLPPS 1063
+ L N L + I AF G L ++R+ DT N + LPP+
Sbjct: 559 RALFLRANRLHMTSIAPEAFLG---LLHLRVVDTTGNPEPVLVRLPPT 603
>ref|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 119 bits (297), Expect = 8e-27
Identities = 91/304 (29%), Positives = 143/304 (47%), Gaps = 6/304 (1%)
Frame = +2
Query: 416 LLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPEL-EPLGPMCPFRCQC-HLRV 589
LLL + GP G+ ED+AS FP + E +P CP RC C
Sbjct: 42 LLLLLLLLPGPQPALGM-----EDDAS-------FPHLGESSQPPPRACPPRCSCPRPDT 89
Query: 590 VQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISP 763
V C L L P ++ L LQNN++ E+ + L L TL L NN IS +
Sbjct: 90 VDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNELSRLSGLRTLNLHNNLISSEGLPD 149
Query: 764 GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELG 943
AF L +L+ +Y++ N+L P+ +P++L+ + NE+T++ F + V L
Sbjct: 150 EAFESLTQLQHIYVAHNKLSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLH 209
Query: 944 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXX 1123
N L ++G+ AF+G + ++ + ++ ++ +P LPPSL LHL N ISKV
Sbjct: 210 NNQLSNAGLPPDAFRGSEAVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALS 269
Query: 1124 XXXXXXXXXXXFNSI--STVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLH 1297
N + S +D + + L L L++N+L VP GL + + V++L
Sbjct: 270 RQTHLRELYLQHNQLTDSGLDATTFSKLHRLEYLDLSHNQLAAVPAGLP--RTLAVLHLG 327
Query: 1298 NNNI 1309
N I
Sbjct: 328 RNRI 331
Score = 102 bits (253), Expect = 1e-21
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 4/244 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP + DL N++TEI F L ++ L NN++S + P AF
Sbjct: 168 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 227
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+ L LS NQL +P +P +L+ L + N I+KV + + + + L N L S
Sbjct: 228 AVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 287
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++ F + +L Y+ ++ + +P GLP +L LHL N+I V+
Sbjct: 288 GLDATTFSKLHRLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRY 347
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + G+L L LHL N+L++VP L + ++ + L +N ++A+
Sbjct: 348 LLLQHNQLGATGLPAGALRPLRGLHTLHLYGNRLDRVPQALP--RRLRALVLPHNRVAAL 405
Query: 1319 GSND 1330
G+ D
Sbjct: 406 GARD 409
Score = 84.7 bits (208), Expect = 2e-16
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 2/253 (0%)
Frame = +2
Query: 542 PLGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P G + P R L + LD+VP+ LP L L +N++ + D + L
Sbjct: 361 PAGALRPLR---GLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLA 417
Query: 722 TLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
L L N ++ ++ AF L L L L+ NQL +LP +P L LR+ N++ +
Sbjct: 418 ELNLAYNCLASARVHLRAFRRLRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLE 477
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
GL+Q+ + L N L+ GI G + ++ L + ++ ++ +P LP +L EL
Sbjct: 478 PEPLAGLHQLQELSLAHNRLRVGGIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEEL 537
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPG 1255
HL GN+I V + +TP LR L L N+L+
Sbjct: 538 HLQGNRIGHVGPE------------------------AFLSTPRLRALFLRANRLHMT-- 571
Query: 1256 GLAEHKYIQVVYL 1294
+A ++ +++L
Sbjct: 572 SIAPEAFLGLLHL 584
Score = 62.8 bits (151), Expect = 7e-10
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Frame = +2
Query: 581 LRVVQCSDLG---LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-- 745
LR ++ DL L ++P LP L LQ N++ ++ L L L L +N+
Sbjct: 439 LRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLR 498
Query: 746 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQM 925
+ I PG + L L+ L LS N+L +P +P+ L+EL + N I V F ++
Sbjct: 499 VGGIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGPEAFLSTPRL 558
Query: 926 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLPPS 1063
+ L N L + I AF G L ++R+ DT N + LPP+
Sbjct: 559 RALFLRANRLHMTSIAPEAFLG---LLHLRVVDTTGNPEPVLVRLPPT 603
>ref|NP_001179156.1| podocan [Bos taurus].
Length = 661
Score = 117 bits (292), Expect = 3e-26
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 5/278 (1%)
Frame = +2
Query: 521 PEVPELEPLGPMCPFRCQCHLR-VVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGD 697
PE P P CP C C VV C + L + P DLP T L LQNN++ +I +
Sbjct: 104 PEEPGRGPATIGCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPRE 163
Query: 698 FKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 871
L L TL L NN+++ + AF L L LYL+ N+L P +P L +
Sbjct: 164 LSRLHRLETLNLQNNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNALISVDFA 223
Query: 872 ENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 1051
N +TK+ F + V L N L +G+ + F G + + ++ + +P+
Sbjct: 224 ANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSSNVEILILSSNFLRHVPKH 283
Query: 1052 LPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSIST--VDNGSLANTPHLRELHL 1225
LPP+L +LHL NK+ K+ N ++ +DN + L L L
Sbjct: 284 LPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNHLTDEGLDNETFWKLSSLEYLDL 343
Query: 1226 NNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
++N L++VP GL + + +++L N I +V ++ P
Sbjct: 344 SSNNLSRVPAGLP--RSLVLLHLEKNAIRSVDADVLTP 379
Score = 105 bits (263), Expect = 7e-23
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP +D N +T+I F NL ++ L NNK++ + F
Sbjct: 206 LTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSS 265
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+E L LS N L+ +P+ +P L +L + N++ K+ F+ L+ + + L N L
Sbjct: 266 NVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNHLTDE 325
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++N F + L Y+ ++ N++ +P GLP SL LHL+ N I VD
Sbjct: 326 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEY 385
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + + L +HL NN L +VP GL + ++ + + +N I+ V
Sbjct: 386 LLLHSNQLRAQGIHPRAFQGLKRLHTVHLYNNALERVPSGLP--RRVRTLMILHNQITGV 443
Query: 1319 GSNDF 1333
G +DF
Sbjct: 444 GRDDF 448
Score = 93.6 bits (231), Expect = 4e-19
Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 4/255 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-- 754
L + S L +VP LP LL L+ N I + +++L L+L +N++
Sbjct: 338 LEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEYLLLHSNQLRAQG 397
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I P AF L +L ++L N L+ +P +P+ ++ L + N+IT V + F + +
Sbjct: 398 IHPRAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGVGRDDFATTYHLEEL 457
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N + S + AF+ ++ L + ++ + T+P GLP ++ L + N++ +
Sbjct: 458 NLSYNRITSPRVHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKIKRNELVALARG 517
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANT--PHLRELHLNNNKLNKVPGGLAEHKYIQVV 1288
N + G A T L+ L + N+L ++PGGL E ++ +
Sbjct: 518 ALAGMAQLRELYLTGNRLRNRALGPRAWTDLSGLQLLDIAGNQLTEIPGGLPES--LEYL 575
Query: 1289 YLHNNNISAVGSNDF 1333
YL NN ISAV +N F
Sbjct: 576 YLQNNKISAVPANAF 590
Score = 89.4 bits (220), Expect = 7e-18
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--K 754
L V + L++VP LP L + +N+IT + DF +L L L N+I+ +
Sbjct: 409 LHTVHLYNNALERVPSGLPRRVRTLMILHNQITGVGRDDFATTYHLEELNLSYNRITSPR 468
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
+ AF L L L LS N+L LP +P+ + L++ NE+ + + G+ Q+ +
Sbjct: 469 VHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKIKRNELVALARGALAGMAQLREL 528
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N L++ + A+ + L + IA +T IP GLP SL L+L NKIS V
Sbjct: 529 YLTGNRLRNRALGPRAWTDLSGLQLLDIAGNQLTEIPGGLPESLEYLYLQNNKISAVPAN 588
Query: 1115 XXXXXXXXXXXXXXFN--SISTVDNGSLANTPHLRELHLNNN 1234
FN ++ +V + HL+ L + N
Sbjct: 589 AFDSTPNLKGIFLRFNKLAVGSVVESAFRKLKHLQVLDIEGN 630
>ref|XP_002686445.1| PREDICTED: podocan [Bos taurus].
Length = 661
Score = 117 bits (292), Expect = 3e-26
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 5/278 (1%)
Frame = +2
Query: 521 PEVPELEPLGPMCPFRCQCHLR-VVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGD 697
PE P P CP C C VV C + L + P DLP T L LQNN++ +I +
Sbjct: 104 PEEPGRGPATIGCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPRE 163
Query: 698 FKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 871
L L TL L NN+++ + AF L L LYL+ N+L P +P L +
Sbjct: 164 LSRLHRLETLNLQNNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNALISVDFA 223
Query: 872 ENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 1051
N +TK+ F + V L N L +G+ + F G + + ++ + +P+
Sbjct: 224 ANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSSNVEILILSSNFLRHVPKH 283
Query: 1052 LPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSIST--VDNGSLANTPHLRELHL 1225
LPP+L +LHL NK+ K+ N ++ +DN + L L L
Sbjct: 284 LPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNHLTDEGLDNETFWKLSSLEYLDL 343
Query: 1226 NNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
++N L++VP GL + + +++L N I +V ++ P
Sbjct: 344 SSNNLSRVPAGLP--RSLVLLHLEKNAIRSVDADVLTP 379
Score = 105 bits (263), Expect = 7e-23
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP +D N +T+I F NL ++ L NNK++ + F
Sbjct: 206 LTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSS 265
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+E L LS N L+ +P+ +P L +L + N++ K+ F+ L+ + + L N L
Sbjct: 266 NVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNHLTDE 325
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++N F + L Y+ ++ N++ +P GLP SL LHL+ N I VD
Sbjct: 326 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEY 385
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + + L +HL NN L +VP GL + ++ + + +N I+ V
Sbjct: 386 LLLHSNQLRAQGIHPRAFQGLKRLHTVHLYNNALERVPSGLP--RRVRTLMILHNQITGV 443
Query: 1319 GSNDF 1333
G +DF
Sbjct: 444 GRDDF 448
Score = 93.6 bits (231), Expect = 4e-19
Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 4/255 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-- 754
L + S L +VP LP LL L+ N I + +++L L+L +N++
Sbjct: 338 LEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEYLLLHSNQLRAQG 397
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I P AF L +L ++L N L+ +P +P+ ++ L + N+IT V + F + +
Sbjct: 398 IHPRAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGVGRDDFATTYHLEEL 457
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N + S + AF+ ++ L + ++ + T+P GLP ++ L + N++ +
Sbjct: 458 NLSYNRITSPRVHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKIKRNELVALARG 517
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANT--PHLRELHLNNNKLNKVPGGLAEHKYIQVV 1288
N + G A T L+ L + N+L ++PGGL E ++ +
Sbjct: 518 ALAGMAQLRELYLTGNRLRNRALGPRAWTDLSGLQLLDIAGNQLTEIPGGLPES--LEYL 575
Query: 1289 YLHNNNISAVGSNDF 1333
YL NN ISAV +N F
Sbjct: 576 YLQNNKISAVPANAF 590
Score = 89.4 bits (220), Expect = 7e-18
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--K 754
L V + L++VP LP L + +N+IT + DF +L L L N+I+ +
Sbjct: 409 LHTVHLYNNALERVPSGLPRRVRTLMILHNQITGVGRDDFATTYHLEELNLSYNRITSPR 468
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
+ AF L L L LS N+L LP +P+ + L++ NE+ + + G+ Q+ +
Sbjct: 469 VHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKIKRNELVALARGALAGMAQLREL 528
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N L++ + A+ + L + IA +T IP GLP SL L+L NKIS V
Sbjct: 529 YLTGNRLRNRALGPRAWTDLSGLQLLDIAGNQLTEIPGGLPESLEYLYLQNNKISAVPAN 588
Query: 1115 XXXXXXXXXXXXXXFN--SISTVDNGSLANTPHLRELHLNNN 1234
FN ++ +V + HL+ L + N
Sbjct: 589 AFDSTPNLKGIFLRFNKLAVGSVVESAFRKLKHLQVLDIEGN 630
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,657,302
Number of extensions: 1208551
Number of successful extensions: 4990
Number of sequences better than 1.0e-05: 165
Number of HSP's gapped: 4074
Number of HSP's successfully gapped: 304
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003228.1| decorin precursor [Canis lupus familiaris]. 580 e-166
Alignment gi|NP_001003229.1| biglycan precursor [Canis lupus familiaris]. 330 3e-90
Alignment gi|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis ... 301 1e-81
Alignment gi|XP_545678.2| PREDICTED: similar to Prolargin precursor (Prol... 144 2e-34
Alignment gi|XP_533562.2| PREDICTED: similar to Extracellular matrix prot... 136 4e-32
Alignment gi|XP_855323.1| PREDICTED: similar to Extracellular matrix prot... 124 2e-28
Alignment gi|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (F... 122 1e-27
Alignment gi|XP_536704.2| PREDICTED: similar to podocan isoform 1 [Canis ... 118 1e-26
Alignment gi|XP_539716.1| PREDICTED: similar to Lumican precursor (Kerata... 117 2e-26
Alignment gi|XP_539715.1| PREDICTED: similar to Keratocan precursor (KTN)... 115 1e-25
>ref|NP_001003228.1| decorin precursor [Canis lupus familiaris].
Length = 360
Score = 580 bits (1496), Expect = e-166
Identities = 287/329 (87%), Positives = 300/329 (91%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 574
MKATIIFLLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPEDR P++P+LE LGP+CPFRCQ
Sbjct: 1 MKATIIFLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEDRAPDMPDLELLGPVCPFRCQ 60
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGLDKVPKDLPPDT LLDLQNNKITEIKDGDFKNLKNLHTLIL+NNKISK
Sbjct: 61 CHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHTLILVNNKISK 120
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
ISPGAF PL+KLERLYLSKN LKELPEKMPKTLQELR HENEITKVRKAVFNGLNQMIVV
Sbjct: 121 ISPGAFTPLLKLERLYLSKNHLKELPEKMPKTLQELRAHENEITKVRKAVFNGLNQMIVV 180
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL+GNKI+KVD
Sbjct: 181 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLEGNKITKVDAS 240
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
FNSIS VDNG+LANTPHLRELHL+NNKL +VPGGLAEHKYIQVVYL
Sbjct: 241 SLKGLNNLAKLGLSFNSISAVDNGTLANTPHLRELHLDNNKLIRVPGGLAEHKYIQVVYL 300
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
HNNNISAVGSNDFCPPGY K+ SGVS
Sbjct: 301 HNNNISAVGSNDFCPPGYNTKKASYSGVS 329
>ref|NP_001003229.1| biglycan precursor [Canis lupus familiaris].
Length = 369
Score = 330 bits (845), Expect = 3e-90
Identities = 170/329 (51%), Positives = 221/329 (67%), Gaps = 9/329 (2%)
Frame = +2
Query: 422 LAQVSWAGPFQQKGLFDFMLED--------EASGIGPEDRFPEVPELEPL-GPMCPFRCQ 574
L +S A PF+QKG +DF L+D EASG P++ L P MCPF C
Sbjct: 10 LLALSQALPFEQKGFWDFTLDDGLPMLNDEEASGAETTSGVPDLDALTPTYSAMCPFGCH 69
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGL VPK++ PDT LLDLQNN I+E++ DFK L +L+ L+L+NNKISK
Sbjct: 70 CHLRVVQCSDLGLKAVPKEISPDTMLLDLQNNDISELRADDFKGLHHLYALVLVNNKISK 129
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I AF+PL KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +
Sbjct: 130 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 189
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
E+G NPL++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++
Sbjct: 190 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 248
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
N I ++NGSL+ P LRELHL+NNKL++VP GL + K +QVVYL
Sbjct: 249 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPSGLPDLKLLQVVYL 308
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
H NNI+ VG NDFCP G+ KR +G+S
Sbjct: 309 HTNNITKVGVNDFCPVGFGVKRAYYNGIS 337
>ref|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis familiaris].
Length = 372
Score = 301 bits (770), Expect = 1e-81
Identities = 161/338 (47%), Positives = 218/338 (64%), Gaps = 14/338 (4%)
Frame = +2
Query: 410 IFLLLAQVSWAGPFQQKG---LFDFML---EDEASGIGPEDRFPEVPELEPLGPM----- 556
+FL+L + A P + L + ML EDE G P+D P EP+ P
Sbjct: 5 VFLVLLVLCSAKPSSRPSYMMLKNMMLKDTEDEMDG-DPDDDNSLFPTREPINPFFPFDL 63
Query: 557 ---CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 727
CPF CQC+ RVV CSDLGL VP ++P DT ++DLQNNKI EIK+ DFK L +L+ L
Sbjct: 64 FPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTQMIDLQNNKIKEIKENDFKGLTSLYAL 123
Query: 728 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVF 907
IL NNK++KI P AF KL RLYLS NQL E+P +PK+L ELR+H+N++ K++K F
Sbjct: 124 ILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPFNLPKSLAELRIHDNKVKKIQKETF 183
Query: 908 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 1087
G+N + V+E+ NPL ++GIE GAF+G+ + +IRIA+ +T+IP+ LP +L ELHLD
Sbjct: 184 KGMNTLHVLEMSANPLDNNGIEPGAFEGV-TVFHIRIAEAKLTSIPKELPSTLLELHLDY 242
Query: 1088 NKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAE 1267
NKIS V+ N I+ ++NGSLAN P +RE+HL NNKL K+P GL E
Sbjct: 243 NKISTVELEDFKRYKDLQRLGLGNNRIADIENGSLANIPRVREIHLENNKLKKIPSGLQE 302
Query: 1268 HKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
KY+Q+++LH+N+I+ VG NDFCP K+ L S +S
Sbjct: 303 LKYLQIIFLHSNSITKVGVNDFCPTVPKMKKSLYSAIS 340
>ref|XP_545678.2| PREDICTED: similar to Prolargin precursor (Proline-arginine-rich end
leucine-rich repeat protein) [Canis familiaris].
Length = 379
Score = 144 bits (364), Expect = 2e-34
Identities = 91/285 (31%), Positives = 146/285 (51%), Gaps = 7/285 (2%)
Frame = +2
Query: 506 PEDRFPEVPELEP-LGPMCPFRCQCHL---RVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
P D P +P P + P CP C C + C L KVP +PP L LQNN
Sbjct: 52 PTDLPPPLPPGPPSIFPDCPRECYCPSDFPSALYCDSRNLRKVPI-IPPRIHYLYLQNNF 110
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 853
ITE+ F+N L + L NN+I KI L L LY+ KNQL+E+P +P+ L
Sbjct: 111 ITELPVESFQNATGLRWINLDNNRIRKIDQKVLEKLPSLVFLYMEKNQLEEVPSALPRNL 170
Query: 854 QELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 1033
++LR+ +N+I+++ VF+ L+ +++++L N L + FQG+K L + +A +
Sbjct: 171 EQLRLSQNQISRIPPGVFSKLDSLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNIL 230
Query: 1034 TTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNG---SLANTP 1204
+P +P ++ +L+LD NKI + +N +S D G + N
Sbjct: 231 RKMPPKVPAAIHQLYLDSNKIETIPNGYFKGFPNLAFIRLNYNRLS--DRGLPKNSFNIS 288
Query: 1205 HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+L LHL++NK++ VP A + ++ +YL+NN+I + CP
Sbjct: 289 NLLVLHLSHNKISSVP---AINNKLEHLYLNNNSIEKINGTQICP 330
>ref|XP_533562.2| PREDICTED: similar to Extracellular matrix protein 2 precursor
(Matrix glycoprotein SC1/ECM2) [Canis familiaris].
Length = 727
Score = 136 bits (343), Expect = 4e-32
Identities = 86/254 (33%), Positives = 124/254 (48%), Gaps = 4/254 (1%)
Frame = +2
Query: 551 PMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 730
P P C R + C GL ++P P+ L+L N IT I D F L NL L
Sbjct: 342 PSVPSGCSLSYRTISCISAGLLQIPPLTGPEITSLELSGNSITAIPDEAFNGLPNLERLD 401
Query: 731 LINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
L N I+ I P AF L KL RL L N L E+P ++P L+EL+++EN + V +
Sbjct: 402 LSKNNITSPGIGPKAFKRLKKLMRLNLDGNNLAEIPSELPSALEELKINENGLQAVSEES 461
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 1084
+ LNQ++ +EL N L + + AF+ +K LSY+R+ IPQGLP S+ EL+L+
Sbjct: 462 LSDLNQLVTLELEGNNLSETNVNPLAFKSLKSLSYLRLGRNKFRIIPQGLPASIEELYLE 521
Query: 1085 GNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLA--NTPHLRELHLNNNKLNKVPGG 1258
N I ++ +N + LA N +L + L+ NKL VP
Sbjct: 522 NNHIEEITEICFNHTRKINIIVLRYNKLEENRIAPLAWINQENLESIDLSYNKLYHVPSY 581
Query: 1259 LAEHKYIQVVYLHN 1300
L + + +V L N
Sbjct: 582 LPK-SLLHLVLLGN 594
Score = 98.2 bits (243), Expect = 2e-20
Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 18/295 (6%)
Frame = +2
Query: 506 PEDRFPEVPELEPL------------GPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTA 649
P++ F +P LE L GP R + +R+ L ++P +LP
Sbjct: 387 PDEAFNGLPNLERLDLSKNNITSPGIGPKAFKRLKKLMRL-NLDGNNLAEIPSELPSALE 445
Query: 650 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLK 823
L + N + + + +L L TL L N +S+ ++P AF L L L L +N+ +
Sbjct: 446 ELKINENGLQAVSEESLSDLNQLVTLELEGNNLSETNVNPLAFKSLKSLSYLRLGRNKFR 505
Query: 824 ELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 1003
+P+ +P +++EL + N I ++ + FN ++ ++ L N L+ + I A+ + L
Sbjct: 506 IIPQGLPASIEELYLENNHIEEITEICFNHTRKINIIVLRYNKLEENRIAPLAWINQENL 565
Query: 1004 SYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXX-FNSIST-- 1174
I ++ + +P LP SL L L GN+I ++ FN +S
Sbjct: 566 ESIDLSYNKLYHVPSYLPKSLLHLVLLGNQIDRIPGYVFGHMEPGLEYLYLSFNRLSDDG 625
Query: 1175 VDNGSLANTPH-LRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
VD S H LREL L++N L +P G+ E K + + L+NN I + C
Sbjct: 626 VDQVSFYGAYHSLRELFLDHNDLKSIPPGVREMKALHFLRLNNNKIRNILPEQIC 680
>ref|XP_855323.1| PREDICTED: similar to Extracellular matrix protein 2 precursor
(Matrix glycoprotein SC1/ECM2) [Canis familiaris].
Length = 606
Score = 124 bits (311), Expect = 2e-28
Identities = 85/276 (30%), Positives = 136/276 (49%), Gaps = 4/276 (1%)
Frame = +2
Query: 503 GPEDRFPEVPELEPLGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITE 682
G RFP++ E P P C + CS++ + +P P A L L N+I +
Sbjct: 261 GHGHRFPDLGAAEQAMPPLPASCLLARAAIACSNVKMKHIPALTDPGLATLYLAENEIAK 320
Query: 683 IKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 856
I F+ L NL L L NK+ + P AF L +L+RL L N L +P +P +LQ
Sbjct: 321 IPAHAFRGLPNLQWLDLSKNKLDAQGLHPDAFKNLTRLKRLNLDGNSLAAVPA-LPASLQ 379
Query: 857 ELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 1036
EL++++N + ++ + F GL++++ +E+ N L I AFQ + L Y+R+ ++
Sbjct: 380 ELKLNDNVLQGLQHSSFRGLSRLLTLEVEGNQLHDGNISPLAFQPLHSLLYLRLDRNHLR 439
Query: 1037 TIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSI--STVDNGSLANTPHL 1210
TIP GLP SL ELHL N I +V N + + + + P L
Sbjct: 440 TIPPGLPASLRELHLGTNVIEEVTEGMLNHSHSLSVLVLSNNQLQEDRLAPRAWTDLPKL 499
Query: 1211 RELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
L L++N+L +VP L + ++ + LH+N I +
Sbjct: 500 EVLDLSHNRLARVPSSLP--RGLRRLTLHHNRIERI 533
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLV 784
L +P LP L L N I E+ +G + +L L+L NN++ +++P A+ L
Sbjct: 438 LRTIPPGLPASLRELHLGTNVIEEVTEGMLNHSHSLSVLVLSNNQLQEDRLAPRAWTDLP 497
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQ-MIVVELGTNPLKS 961
KLE L LS N+L +P +P+ L+ L +H N I ++ VF + + ++ L N L++
Sbjct: 498 KLEVLDLSHNRLARVPSSLPRGLRRLTLHHNRIERIPAYVFAHMRPGLELLRLSHNSLRT 557
Query: 962 SGIENGAFQGMK-KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI 1096
GI +F G++ L+ + + + IP+GL L LHL N+I
Sbjct: 558 DGIRGASFLGLRSSLAELLLDHNQLRAIPRGLLGLRGLQVLHLSHNEI 605
>ref|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (FM) (Collagen-binding
59 kDa protein) (Keratan sulfate proteoglycan
fibromodulin) (KSPG fibromodulin) [Canis familiaris].
Length = 593
Score = 122 bits (305), Expect = 1e-27
Identities = 84/276 (30%), Positives = 136/276 (49%), Gaps = 7/276 (2%)
Frame = +2
Query: 503 GPEDR-FPEVPEL-EPLGPMCPFRCQC-HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
G ED FP + E +P CP RC C V C+ L L P ++ L LQNN+
Sbjct: 38 GMEDAAFPHLGESSQPPPRACPPRCSCPRADTVDCNGLDLQVFPDNITRAAQHLSLQNNQ 97
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPK 847
+ E+ + L++L TL L NN IS + AF L +L+ +Y++ N+L P+ +P+
Sbjct: 98 LQELPYNELSRLRSLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAPQFLPR 157
Query: 848 TLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 1027
+L+ + N++T++ F + V L N L ++G+ AF G + ++ + ++
Sbjct: 158 SLRVADLAANQVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFHGSEAVATLSLSSN 217
Query: 1028 NITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSI--STVDNGSLANT 1201
++ +P LPPSL LHL N ISKV N + S +D + +
Sbjct: 218 RLSYLPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKL 277
Query: 1202 PHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNI 1309
HL L L++N+L VP GL + + V++L N I
Sbjct: 278 RHLEYLDLSHNQLASVPAGLP--RTLAVLHLGRNRI 311
Score = 99.0 bits (245), Expect = 1e-20
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 4/244 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP + DL N++TEI F L ++ L NN++S + P AF
Sbjct: 148 LSVAPQFLPRSLRVADLAANQVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFHGSE 207
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+ L LS N+L LP +P +L+ L + N I+KV + + + + L N L S
Sbjct: 208 AVATLSLSSNRLSYLPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 267
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++ F ++ L Y+ ++ + ++P GLP +L LHL N+I V+
Sbjct: 268 GLDATTFSKLRHLEYLDLSHNQLASVPAGLPRTLAVLHLGRNRIRWVEAARLRGARGLRY 327
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + G+L L LHL N L++VP L + ++ + L +N+++ +
Sbjct: 328 LLLQHNQLGAEGLPAGALRPLRGLHTLHLYGNGLHRVPPALP--RRLRALVLPHNHVTTL 385
Query: 1319 GSND 1330
G+ D
Sbjct: 386 GARD 389
Score = 93.6 bits (231), Expect = 4e-19
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 4/256 (1%)
Frame = +2
Query: 578 HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK- 754
HL + S L VP LP A+L L N+I ++ + + L L+L +N++
Sbjct: 279 HLEYLDLSHNQLASVPAGLPRTLAVLHLGRNRIRWVEAARLRGARGLRYLLLQHNQLGAE 338
Query: 755 -ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIV 931
+ GA PL L L+L N L +P +P+ L+ L + N +T + GL +
Sbjct: 339 GLPAGALRPLRGLHTLHLYGNGLHRVPPALPRRLRALVLPHNHVTTLGARDLAGLRGLAE 398
Query: 932 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDX 1111
+ L N L S+ + AF+ ++ L + +A +T +P GLP SL L L N++ ++
Sbjct: 399 LNLAYNRLVSARVHRRAFRPLRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALEP 458
Query: 1112 XXXXXXXXXXXXXXXFN--SISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQV 1285
N I + G+ L+ L L++N+L+ VP L E ++
Sbjct: 459 ELLAGLDQLRELSLAHNRLRIGDIGPGTWHELQALQVLDLSHNELSFVPPDLPE--ALEE 516
Query: 1286 VYLHNNNISAVGSNDF 1333
++L N I VGS F
Sbjct: 517 LHLQGNRIGHVGSEAF 532
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 2/253 (0%)
Frame = +2
Query: 542 PLGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P G + P R L + GL +VP LP L L +N +T + D L+ L
Sbjct: 341 PAGALRPLR---GLHTLHLYGNGLHRVPPALPRRLRALVLPHNHVTTLGARDLAGLRGLA 397
Query: 722 TLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
L L N++ +++ AF PL L L L+ NQL LP +P +L+ LR+ N++ +
Sbjct: 398 ELNLAYNRLVSARVHRRAFRPLRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALE 457
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
+ GL+Q+ + L N L+ I G + ++ L + ++ ++ +P LP +L EL
Sbjct: 458 PELLAGLDQLRELSLAHNRLRIGDIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEEL 517
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPG 1255
HL GN+I V + + +TP LR L L N+L+
Sbjct: 518 HLQGNRIGH------------------------VGSEAFLSTPRLRALFLRANRLHMT-- 551
Query: 1256 GLAEHKYIQVVYL 1294
+A ++ +++L
Sbjct: 552 SIAPEAFLGLLHL 564
Score = 62.8 bits (151), Expect = 8e-10
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Frame = +2
Query: 581 LRVVQCSDLG---LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-- 745
LR ++ DL L ++P LP L LQ N++ ++ L L L L +N+
Sbjct: 419 LRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALEPELLAGLDQLRELSLAHNRLR 478
Query: 746 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQM 925
I I PG + L L+ L LS N+L +P +P+ L+EL + N I V F ++
Sbjct: 479 IGDIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGSEAFLSTPRL 538
Query: 926 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLPPS 1063
+ L N L + I AF G L ++R+ DT N + LPP+
Sbjct: 539 RALFLRANRLHMTSIAPEAFLG---LLHLRVVDTAGNPEQVLVRLPPT 583
>ref|XP_536704.2| PREDICTED: similar to podocan isoform 1 [Canis familiaris].
Length = 554
Score = 118 bits (296), Expect = 1e-26
Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 5/278 (1%)
Frame = +2
Query: 521 PEVPELEPLGPMCPFRCQCHLR-VVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGD 697
PE P P CP C C VV C + L + P DLP T L LQNN++ +I +
Sbjct: 56 PEEPGPGPATINCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPQE 115
Query: 698 FKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 871
L L TL L NN+++ + AF L L LYL+ N+L P +P TL +
Sbjct: 116 LSRLHRLETLNLQNNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNTLISVDFA 175
Query: 872 ENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 1051
N +TK+ F + V L N L +G+ + F G + + ++ + +P+
Sbjct: 176 ANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSSNVEILILSSNFLRHVPKH 235
Query: 1052 LPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSIST--VDNGSLANTPHLRELHL 1225
LPP+L +LHL NK+ K+ N ++ +DN + L L L
Sbjct: 236 LPPALYKLHLKNNKLEKIPPGAFSELSHLRELYLQNNYLTDEGLDNETFWKLSSLEYLDL 295
Query: 1226 NNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
++N L++VP GL + + +++L N I +V ++ P
Sbjct: 296 SSNNLSRVPAGLP--RSLVLLHLEKNAIRSVDADVLTP 331
Score = 105 bits (262), Expect = 1e-22
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP +D N +T+I F NL ++ L NNK++ + F
Sbjct: 158 LTLAPRFLPNTLISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSS 217
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+E L LS N L+ +P+ +P L +L + N++ K+ F+ L+ + + L N L
Sbjct: 218 NVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSHLRELYLQNNYLTDE 277
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++N F + L Y+ ++ N++ +P GLP SL LHL+ N I VD
Sbjct: 278 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEY 337
Query: 1145 XXXXFNSIST--VDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + + L +HL NN L +VP GL + ++ + + +N I+ +
Sbjct: 338 LLLHSNQLHARGIHPRAFQGLKRLHTVHLYNNALERVPSGLP--RRVRTLMILHNQITGI 395
Query: 1319 GSNDF 1333
G +DF
Sbjct: 396 GRDDF 400
Score = 89.7 bits (221), Expect = 6e-18
Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 4/255 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-- 754
L + S L +VP LP LL L+ N I + +++L L+L +N++
Sbjct: 290 LEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDADVLTPIRSLEYLLLHSNQLHARG 349
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I P AF L +L ++L N L+ +P +P+ ++ L + N+IT + + F + +
Sbjct: 350 IHPRAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGRDDFATTYFLEEL 409
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N + S + AF+ ++ L + ++ + T+P GLP ++ L + N+++ +
Sbjct: 410 NLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKVKRNELAALARG 469
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNG--SLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVV 1288
N + + G + A+ L+ L + N+L ++P GL E ++ +
Sbjct: 470 ALAGMAQLRELYLTGNRLRSRALGPRAWADLARLQLLDIAGNQLTEIPEGLPES--LEYL 527
Query: 1289 YLHNNNISAVGSNDF 1333
YL NN IS V +N F
Sbjct: 528 YLQNNKISTVPANAF 542
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Frame = +2
Query: 476 MLEDEASGIGPEDRFPEVPELEPLG--------PMCPFRCQCHLRVVQCSDLG---LDKV 622
+L ++ +GIG +D F LE L P LR+++ DL L +
Sbjct: 387 ILHNQITGIGRDD-FATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHTL 445
Query: 623 PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLER 796
P LP + +L ++ N++ + G + L L L N++ + P A+A L +L+
Sbjct: 446 PPGLPRNVHVLKVKRNELAALARGALAGMAQLRELYLTGNRLRSRALGPRAWADLARLQL 505
Query: 797 LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFN 910
L ++ NQL E+PE +P++L+ L + N+I+ V F+
Sbjct: 506 LDIAGNQLTEIPEGLPESLEYLYLQNNKISTVPANAFD 543
>ref|XP_539716.1| PREDICTED: similar to Lumican precursor (Keratan sulfate proteoglycan
lumican) (KSPG lumican) [Canis familiaris].
Length = 338
Score = 117 bits (294), Expect = 2e-26
Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 6/268 (2%)
Frame = +2
Query: 551 PMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P C C C + + C +L L VP +PP L L+NN+I I + F+N+ +L
Sbjct: 35 PNCAPECNCPESYPSAMYCDELKLKSVPM-VPPGIKYLYLRNNQIDHIDEKAFENVTDLQ 93
Query: 722 TLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
LIL +N + SKI F+ L +L++L+++ N L E +PK+L +L++ N+I K+
Sbjct: 94 WLILDHNLLENSKIKGRIFSKLKQLKKLHINHNNLTESVGPLPKSLVDLQLTHNKIQKLG 153
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
F+GL + V L N LK + + AF+G+K L Y+ ++ + +P GLP SL L
Sbjct: 154 S--FDGLVNLTFVHLQHNQLKEDTV-SAAFKGLKSLEYLDLSYNQMAKLPSGLPASLLTL 210
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVD-NGSLANTPHLRELHLNNNKLNKVP 1252
+LD NKIS + N ++ G+ N L EL L+ NKL +P
Sbjct: 211 YLDNNKISNIPDEYFKRFNGLQYLRLSHNELADSGVPGNSFNVSSLLELDLSYNKLKNIP 270
Query: 1253 GGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
++ ++ YL N + FC
Sbjct: 271 ---TVNENLENYYLEVNELEKFEVKSFC 295
>ref|XP_539715.1| PREDICTED: similar to Keratocan precursor (KTN) (Keratan sulfate
proteoglycan keratocan) isoform 1 [Canis familiaris].
Length = 350
Score = 115 bits (287), Expect = 1e-25
Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 6/268 (2%)
Frame = +2
Query: 557 CPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 727
CP C C + C + GL ++P +P L L+NN I I + F+N L +
Sbjct: 42 CPRECFCPPSFPTALYCENRGLKEIPP-IPSRIWYLYLENNLIETIPEKPFENATQLRWI 100
Query: 728 ILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKA 901
L NKI+ I GA + L KL L+L N+L+E+P +P++L++L++ N+++++ +
Sbjct: 101 NLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQG 160
Query: 902 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 1081
F+ L + +++L N L + + F+G+K L + +A + +P LP + +L L
Sbjct: 161 TFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFL 220
Query: 1082 DGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLA-NTPHLRELHLNNNKLNKVPGG 1258
D N I + N +S S + + +L L++N+L KVP
Sbjct: 221 DNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFDVSSILDLQLSHNQLTKVPRI 280
Query: 1259 LAEHKYIQVVYLHNNNISAVGSNDFCPP 1342
A ++Q ++L +N I V + CPP
Sbjct: 281 SA---HLQHLHLDHNKIKNVNVSVICPP 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,738,531
Number of extensions: 1245763
Number of successful extensions: 4464
Number of sequences better than 1.0e-05: 125
Number of HSP's gapped: 3806
Number of HSP's successfully gapped: 214
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177380.1| decorin preproprotein [Mus musculus]. 493 e-139
Alignment gi|NP_031859.1| decorin preproprotein [Mus musculus]. 493 e-139
Alignment gi|NP_031568.2| biglycan precursor [Mus musculus]. 333 2e-91
Alignment gi|NP_001165952.1| asporin preproprotein [Mus musculus]. 298 5e-81
Alignment gi|NP_079987.2| asporin preproprotein [Mus musculus]. 298 5e-81
Alignment gi|NP_473418.3| prolargin precursor [Mus musculus]. 141 1e-33
Alignment gi|NP_001012324.1| extracellular matrix protein 2 precursor [Mu... 129 5e-30
Alignment gi|NP_032550.2| lumican precursor [Mus musculus]. 119 4e-27
Alignment gi|NP_766462.2| podocan precursor [Mus musculus]. 116 4e-26
Alignment gi|NP_056563.2| slit homolog 1 protein precursor [Mus musculus]. 110 3e-24
>ref|NP_001177380.1| decorin preproprotein [Mus musculus].
Length = 354
Score = 493 bits (1269), Expect = e-139
Identities = 248/329 (75%), Positives = 276/329 (83%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 574
MKAT+IF LLAQVSWAGPF+Q+GLFDFMLEDEASGI P D P+ PL MCP+RCQ
Sbjct: 1 MKATLIFFLLAQVSWAGPFEQRGLFDFMLEDEASGIIPYD-----PD-NPLISMCPYRCQ 54
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGLDKVP D PPDT LLDLQNNKITEIK+G FKNLK+LHTLIL+NNKISK
Sbjct: 55 CHLRVVQCSDLGLDKVPWDFPPDTTLLDLQNNKITEIKEGAFKNLKDLHTLILVNNKISK 114
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
ISP AF PLVKLERLYLSKNQLKELPEKMP+TLQELRVHENEITK+RK+ FNGLN ++V+
Sbjct: 115 ISPEAFKPLVKLERLYLSKNQLKELPEKMPRTLQELRVHENEITKLRKSDFNGLNNVLVI 174
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
ELG NPLK+SGIENGAFQG+K LSYIRI+DTNIT IPQGLP SLTE+HLDGNKI+KVD
Sbjct: 175 ELGGNPLKNSGIENGAFQGLKSLSYIRISDTNITAIPQGLPTSLTEVHLDGNKITKVDAP 234
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
FNSI+ ++NGSLAN PHLRELHL+NNKL +VP GLA+HKYIQVVYL
Sbjct: 235 SLKGLINLSKLGLSFNSITVMENGSLANVPHLRELHLDNNKLLRVPAGLAQHKYIQVVYL 294
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
HNNNISAVG NDFC G+ ++ S VS
Sbjct: 295 HNNNISAVGQNDFCRAGHPSRKASYSAVS 323
>ref|NP_031859.1| decorin preproprotein [Mus musculus].
Length = 354
Score = 493 bits (1269), Expect = e-139
Identities = 248/329 (75%), Positives = 276/329 (83%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 574
MKAT+IF LLAQVSWAGPF+Q+GLFDFMLEDEASGI P D P+ PL MCP+RCQ
Sbjct: 1 MKATLIFFLLAQVSWAGPFEQRGLFDFMLEDEASGIIPYD-----PD-NPLISMCPYRCQ 54
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGLDKVP D PPDT LLDLQNNKITEIK+G FKNLK+LHTLIL+NNKISK
Sbjct: 55 CHLRVVQCSDLGLDKVPWDFPPDTTLLDLQNNKITEIKEGAFKNLKDLHTLILVNNKISK 114
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
ISP AF PLVKLERLYLSKNQLKELPEKMP+TLQELRVHENEITK+RK+ FNGLN ++V+
Sbjct: 115 ISPEAFKPLVKLERLYLSKNQLKELPEKMPRTLQELRVHENEITKLRKSDFNGLNNVLVI 174
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
ELG NPLK+SGIENGAFQG+K LSYIRI+DTNIT IPQGLP SLTE+HLDGNKI+KVD
Sbjct: 175 ELGGNPLKNSGIENGAFQGLKSLSYIRISDTNITAIPQGLPTSLTEVHLDGNKITKVDAP 234
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
FNSI+ ++NGSLAN PHLRELHL+NNKL +VP GLA+HKYIQVVYL
Sbjct: 235 SLKGLINLSKLGLSFNSITVMENGSLANVPHLRELHLDNNKLLRVPAGLAQHKYIQVVYL 294
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
HNNNISAVG NDFC G+ ++ S VS
Sbjct: 295 HNNNISAVGQNDFCRAGHPSRKASYSAVS 323
>ref|NP_031568.2| biglycan precursor [Mus musculus].
Length = 369
Score = 333 bits (854), Expect = 2e-91
Identities = 170/333 (51%), Positives = 225/333 (67%), Gaps = 9/333 (2%)
Frame = +2
Query: 410 IFLLLAQVSWAGPFQQKGLFDFMLED--------EASGIGPEDRFPEVPELEP-LGPMCP 562
+ LL +S A PF+QKG +DF L+D EASG P++ + P MCP
Sbjct: 6 LLTLLLALSQALPFEQKGFWDFTLDDGLLMMNDEEASGSDTTSGVPDLDSVTPTFSAMCP 65
Query: 563 FRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 742
F C CHLRVVQCSDLGL VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NN
Sbjct: 66 FGCHCHLRVVQCSDLGLKTVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 125
Query: 743 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQ 922
KISKI AF+PL KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL
Sbjct: 126 KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN 185
Query: 923 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISK 1102
M +E+G NPL++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI
Sbjct: 186 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 244
Query: 1103 VDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQ 1282
++ N I ++NGSL+ P LRELHL+NNKL++VP GL + K +Q
Sbjct: 245 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 304
Query: 1283 VVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
VVYLH+NNI+ VG NDFCP G+ KR +G+S
Sbjct: 305 VVYLHSNNITKVGINDFCPMGFGVKRAYYNGIS 337
>ref|NP_001165952.1| asporin preproprotein [Mus musculus].
Length = 373
Score = 298 bits (764), Expect = 5e-81
Identities = 161/343 (46%), Positives = 218/343 (63%), Gaps = 14/343 (4%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPF---QQKGLFDFML---EDEASGIGPEDRFPEVPELEPLGPM 556
MK ++ LLLA S A PF L + ML ED +D P EP+ P
Sbjct: 1 MKEYVMLLLLAVCS-AKPFFSPSHTALKNMMLKDMEDTDDDDNDDDDNSLFPTKEPVNPF 59
Query: 557 --------CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 712
CPF CQC+ RVV CSDLGL VP ++P DT ++DLQNNKI EIK+ DFK L
Sbjct: 60 FPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPNNIPFDTRMVDLQNNKIKEIKENDFKGLT 119
Query: 713 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 892
+L+ LIL NNK++KI P F KL RLYLS NQL E+P +PK+L ELR+H+N++ K+
Sbjct: 120 SLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKI 179
Query: 893 RKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 1072
+K F G+N + V+E+ NPL+++GIE GAF+G+ + +IRIA+ +T+IP+GLPP+L E
Sbjct: 180 QKDTFKGMNALHVLEMSANPLENNGIEPGAFEGV-TVFHIRIAEAKLTSIPKGLPPTLLE 238
Query: 1073 LHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVP 1252
LHLD NKIS V+ N I+ ++NG+ AN P +RE+HL +NKL K+P
Sbjct: 239 LHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGTFANIPRVREIHLEHNKLKKIP 298
Query: 1253 GGLAEHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
GL E KY+Q+++LH N+I+ VG NDFCP K+ L S +S
Sbjct: 299 SGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLYSAIS 341
>ref|NP_079987.2| asporin preproprotein [Mus musculus].
Length = 373
Score = 298 bits (764), Expect = 5e-81
Identities = 161/343 (46%), Positives = 218/343 (63%), Gaps = 14/343 (4%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPF---QQKGLFDFML---EDEASGIGPEDRFPEVPELEPLGPM 556
MK ++ LLLA S A PF L + ML ED +D P EP+ P
Sbjct: 1 MKEYVMLLLLAVCS-AKPFFSPSHTALKNMMLKDMEDTDDDDNDDDDNSLFPTKEPVNPF 59
Query: 557 --------CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 712
CPF CQC+ RVV CSDLGL VP ++P DT ++DLQNNKI EIK+ DFK L
Sbjct: 60 FPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPNNIPFDTRMVDLQNNKIKEIKENDFKGLT 119
Query: 713 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 892
+L+ LIL NNK++KI P F KL RLYLS NQL E+P +PK+L ELR+H+N++ K+
Sbjct: 120 SLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKI 179
Query: 893 RKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 1072
+K F G+N + V+E+ NPL+++GIE GAF+G+ + +IRIA+ +T+IP+GLPP+L E
Sbjct: 180 QKDTFKGMNALHVLEMSANPLENNGIEPGAFEGV-TVFHIRIAEAKLTSIPKGLPPTLLE 238
Query: 1073 LHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVP 1252
LHLD NKIS V+ N I+ ++NG+ AN P +RE+HL +NKL K+P
Sbjct: 239 LHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGTFANIPRVREIHLEHNKLKKIP 298
Query: 1253 GGLAEHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
GL E KY+Q+++LH N+I+ VG NDFCP K+ L S +S
Sbjct: 299 SGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLYSAIS 341
>ref|NP_473418.3| prolargin precursor [Mus musculus].
Length = 378
Score = 141 bits (355), Expect = 1e-33
Identities = 92/298 (30%), Positives = 145/298 (48%), Gaps = 20/298 (6%)
Frame = +2
Query: 506 PEDRFPEVPE-LEPLG-------------PMCPFRCQC---HLRVVQCSDLGLDKVPKDL 634
P RFP+ PE EP P CP C C + C L +VP +
Sbjct: 38 PTPRFPQAPEPAEPTDLPPPLPPGPPSVFPDCPRECYCPPDFPSALYCDSRNLRRVPV-I 96
Query: 635 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 814
PP L LQNN ITE+ F+N L + L NN+I K+ L L LY+ KN
Sbjct: 97 PPRIHYLYLQNNFITELPLESFQNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKN 156
Query: 815 QLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 994
QL+E+P +P+ L++LR+ +N I+++ VF+ L +++++L N L + FQG+
Sbjct: 157 QLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKADTFQGL 216
Query: 995 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSIST 1174
K L + +A + +P +P ++ +L+LD NKI + +N +S
Sbjct: 217 KNLMQLNLAHNILRKMPPKVPQAIHQLYLDSNKIETIPNGYFKDFPNLAFIRMNYNKLS- 275
Query: 1175 VDNG---SLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
D G + N +L LHL++NK++ VP A ++ +YL+NN+I + CP
Sbjct: 276 -DRGLPKNSFNISNLLVLHLSHNKISNVP---AISNKLEHLYLNNNSIEKINGTQICP 329
>ref|NP_001012324.1| extracellular matrix protein 2 precursor [Mus musculus].
Length = 670
Score = 129 bits (324), Expect = 5e-30
Identities = 86/270 (31%), Positives = 124/270 (45%), Gaps = 4/270 (1%)
Frame = +2
Query: 551 PMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 730
P P C R + C ++P P+ L+L N I I D F L NL L
Sbjct: 285 PRLPRSCSLSYRTISCVHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLD 344
Query: 731 LINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
L N I S I P AF L KL RL + N L +P +P TL+EL++++N + + +
Sbjct: 345 LSRNNITSSGIGPKAFKSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKS 404
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 1084
+ LNQ++ +EL N L ++ AFQ ++ LSY+R+ IPQGLP S EL+L+
Sbjct: 405 LSDLNQLVTLELEGNNLSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLE 464
Query: 1085 GNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLA--NTPHLRELHLNNNKLNKVPGG 1258
N+I ++ +N I LA N +L + L+ NKL VP
Sbjct: 465 NNQIEEITEICFNHTRKITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSY 524
Query: 1259 LAEHKYIQVVYLHNNNISAVGSNDFCPPGY 1348
L K + + L N I + PGY
Sbjct: 525 LP--KSLLHLVLIGNQIDRI-------PGY 545
Score = 98.6 bits (244), Expect = 1e-20
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 18/295 (6%)
Frame = +2
Query: 506 PEDRFPEVPELEPL------------GPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTA 649
P++ F +P LE L GP F+ L + L +P DLP
Sbjct: 330 PDEAFNGLPNLERLDLSRNNITSSGIGPKA-FKSLKKLMRLNMDGNNLVHIPSDLPSTLE 388
Query: 650 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQLK 823
L + +N + I + +L L TL L N +S+I+ P AF L L L L +N+ +
Sbjct: 389 ELKINDNNLQAIDEKSLSDLNQLVTLELEGNNLSEINVDPLAFQSLESLSYLRLGRNKFR 448
Query: 824 ELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 1003
+P+ +P + +EL + N+I ++ + FN ++ ++ L N ++ S I A+ + L
Sbjct: 449 IIPQGLPASTEELYLENNQIEEITEICFNHTRKITMIILRYNKIEESRIAPLAWINQENL 508
Query: 1004 SYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXX-FNSIST-- 1174
I ++ + +P LP SL L L GN+I ++ FN +S
Sbjct: 509 ESIDLSYNKLYHVPSYLPKSLLHLVLIGNQIDRIPGYVFGHMQPGLEYLYLSFNRLSDDG 568
Query: 1175 VDNGSLANTPH-LRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
VD S H LREL L++N +P G+ + K + + L+NN I + C
Sbjct: 569 VDLVSFYGAYHSLRELFLDHNDFKSIPPGIQDMKALHFLRLNNNKIRNIHPEQIC 623
>ref|NP_032550.2| lumican precursor [Mus musculus].
Length = 338
Score = 119 bits (299), Expect = 4e-27
Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 6/270 (2%)
Frame = +2
Query: 545 LGPMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 715
+ P C C C + + C DL L VP +PP L L+NN+I I + F+N+ +
Sbjct: 33 ISPNCAPECNCPHSYPTAMYCDDLKLKSVPM-VPPGIKYLYLRNNQIDHIDEKAFENVTD 91
Query: 716 LHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 889
L LIL +N + SKI F+ L +L++L+++ N L E +PK+LQ+L++ N+I+K
Sbjct: 92 LQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISK 151
Query: 890 VRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 1069
+ F+GL + + L N LK + + + +G+K L Y+ ++ ++ +P GLP SL
Sbjct: 152 L--GSFDGLVNLTFIYLQHNQLKEDAV-SASLKGLKSLEYLDLSFNQMSKLPAGLPTSLL 208
Query: 1070 ELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVD-NGSLANTPHLRELHLNNNKLNK 1246
L+LD NKIS + N ++ G+ N L EL L+ NKL
Sbjct: 209 TLYLDNNKISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKS 268
Query: 1247 VPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
+P ++ ++ YL N + FC
Sbjct: 269 IP---TVNENLENYYLEVNELEKFDVKSFC 295
>ref|NP_766462.2| podocan precursor [Mus musculus].
Length = 611
Score = 116 bits (291), Expect = 4e-26
Identities = 81/277 (29%), Positives = 129/277 (46%), Gaps = 5/277 (1%)
Frame = +2
Query: 524 EVPELEPLGPMCPFRCQCHLR-VVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDF 700
E PE P CP C C VV C + L + P DLP T L LQNN++ +I +
Sbjct: 58 EEPEPGPATVDCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPEEL 117
Query: 701 KNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 874
L+ L TL L NN+++ + AF L L LYL+ N+L P +P L +
Sbjct: 118 SRLQRLETLNLQNNRLTSRGLPEEAFEHLTSLNYLYLANNKLTLAPRFLPNALISVDFAA 177
Query: 875 NEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 1054
N +TK+ F + V L N L +G+ + F G + + ++ + +P+ L
Sbjct: 178 NYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDHMFNGSSNVEILILSSNFLRHVPKHL 237
Query: 1055 PPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSIST--VDNGSLANTPHLRELHLN 1228
PP+L +LHL NK+ K+ N ++ +DN + L L L+
Sbjct: 238 PPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLS 297
Query: 1229 NNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+N L++VP GL + + +++L N I +V ++ P
Sbjct: 298 SNNLSRVPAGLP--RSLVLLHLEKNAIQSVEADVLTP 332
Score = 103 bits (256), Expect = 4e-22
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 4/245 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP +D N +T+I F NL ++ L NNK++ + F
Sbjct: 159 LTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDHMFNGSS 218
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+E L LS N L+ +P+ +P L +L + N++ K+ F+ L+ + + L N L
Sbjct: 219 NVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNYLTDE 278
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++N F + L Y+ ++ N++ +P GLP SL LHL+ N I V+
Sbjct: 279 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIQSVEADVLTPIRNLEY 338
Query: 1145 XXXXFNSISTVDNGSLA--NTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + LA L +HL NN L +VP GL + ++ + + +N I+ +
Sbjct: 339 LLLHSNQLQAKGIHPLAFQGLKKLHTVHLYNNALERVPSGLP--RRVRTLMILHNQITGI 396
Query: 1319 GSNDF 1333
G DF
Sbjct: 397 GREDF 401
Score = 94.4 bits (233), Expect = 2e-19
Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 5/255 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--K 754
L V + L++VP LP L + +N+IT I DF L L L N+I+ +
Sbjct: 362 LHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGREDFATTYFLEELNLSYNRITSPQ 421
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
+ AF L L L LS N+L+ LP +PK + L+V NE+ + + G+ Q+ +
Sbjct: 422 MHRDAFRKLRLLRSLDLSGNRLQTLPPGLPKNVHVLKVKRNELAALARGALAGMAQLREL 481
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N L+S + A+ + L + IA +T +P+GLPPSL L+L NK
Sbjct: 482 YLTGNRLRSRALGPRAWVDLAGLQLLDIAGNQLTEVPEGLPPSLEYLYLQNNK------- 534
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKL---NKVPGGLAEHKYIQV 1285
IS V + +TP+L+ + L NKL + V K++QV
Sbjct: 535 -----------------ISAVPANAFDSTPNLKGIFLRFNKLAVGSVVESAFRRLKHLQV 577
Query: 1286 VYLHNNNISAVGSND 1330
+ + N GS D
Sbjct: 578 LDIEGNFEFGNGSKD 592
Score = 91.7 bits (226), Expect = 1e-18
Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 4/255 (1%)
Frame = +2
Query: 581 LRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-- 754
L + S L +VP LP LL L+ N I ++ ++NL L+L +N++
Sbjct: 291 LEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIQSVEADVLTPIRNLEYLLLHSNQLQAKG 350
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I P AF L KL ++L N L+ +P +P+ ++ L + N+IT + + F + +
Sbjct: 351 IHPLAFQGLKKLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGREDFATTYFLEEL 410
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
L N + S + AF+ ++ L + ++ + T+P GLP ++ L + N+++ +
Sbjct: 411 NLSYNRITSPQMHRDAFRKLRLLRSLDLSGNRLQTLPPGLPKNVHVLKVKRNELAALARG 470
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLA--NTPHLRELHLNNNKLNKVPGGLAEHKYIQVV 1288
N + + G A + L+ L + N+L +VP GL ++ +
Sbjct: 471 ALAGMAQLRELYLTGNRLRSRALGPRAWVDLAGLQLLDIAGNQLTEVPEGLPPS--LEYL 528
Query: 1289 YLHNNNISAVGSNDF 1333
YL NN ISAV +N F
Sbjct: 529 YLQNNKISAVPANAF 543
>ref|NP_056563.2| slit homolog 1 protein precursor [Mus musculus].
Length = 1531
Score = 110 bits (274), Expect = 3e-24
Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Frame = +2
Query: 557 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 736
CP C C V C GL +PK++P +T L+L N IT I DF LK L L L+
Sbjct: 34 CPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLM 93
Query: 737 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKAVF 907
N+I + GAF + +LERL L++NQL+ LPE + + L L + EN + V + F
Sbjct: 94 ENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDLSENFLQAVPRKAF 153
Query: 908 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 1045
G + ++L N + S IE GAF+ ++ L + + + NITTIP
Sbjct: 154 RGATDLKNLQLDKN--RISCIEEGAFRALRGLEVLTLNNNNITTIP 197
Score = 99.0 bits (245), Expect = 8e-21
Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 35/294 (11%)
Frame = +2
Query: 557 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLIL 733
CP +C+C VV+CS L L K+P+ +P T L L NN+I+ ++ G FK L +L + L
Sbjct: 513 CPHKCRCEASVVECSSLKLSKIPERIPQSTTELRLNNNEISILEATGLFKKLSHLKKINL 572
Query: 734 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKAV 904
NNK+S+I G F + L+L+ NQL+ + M + L LR + N I+ +
Sbjct: 573 SNNKVSEIEDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDS 632
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI------ADTNITTIPQGL---- 1054
F GL + ++ L N + + I GAF ++ LS + + + +++ + L
Sbjct: 633 FTGLRNVRLLSLYDNHITT--ISPGAFDTLQALSTLNLLANPFNCNCHLSWLGDWLRKRK 690
Query: 1055 ----------PPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTP 1204
P L ++ L + +D +
Sbjct: 691 IVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEEVGCLPRPQCPQECACLDTVVRCSNK 750
Query: 1205 HLREL-----------HLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDF 1333
HL+ L +L+ N+ VPG L+ KY+Q+V L NN IS++ ++ F
Sbjct: 751 HLQALPKGIPKNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSF 804
Score = 80.1 bits (196), Expect = 4e-15
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 3/192 (1%)
Frame = +2
Query: 455 QKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQCHLRVVQCSDLGLDKVPKDL 634
QKG F + EA+G P CP C C +V C GL +P +L
Sbjct: 257 QKGEFSCSGQGEAAG---------APACTLSSGSCPAMCSCSSGIVDCRGKGLTAIPANL 307
Query: 635 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 814
P + L+ N I I G F + L + L NN+I++I+P AF L L L L N
Sbjct: 308 PETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLYGN 367
Query: 815 QLKELPEKM---PKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAF 985
++ +LP + TLQ L ++ N+I +R F L + ++ L N ++S + G F
Sbjct: 368 KITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQS--LAKGTF 425
Query: 986 QGMKKLSYIRIA 1021
++ + + +A
Sbjct: 426 TSLRAIQTLHLA 437
Score = 77.8 bits (190), Expect = 2e-14
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Frame = +2
Query: 446 PFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQCHLRVVQCSDLGLDKVP 625
P Q DF E+ +G R P CP C C VV+CS+ L +P
Sbjct: 708 PLQDVAFPDFRCEEGQEEVGCLPR-----------PQCPQECACLDTVVRCSNKHLQALP 756
Query: 626 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 805
K +P + L L N+ T + G K L + L NNKIS +S +F + +L L L
Sbjct: 757 KGIPKNVTELYLDGNQFTLVP-GQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLIL 815
Query: 806 SKNQLKELPEKMPKTLQELRV---HENEITKVRKAVFNGLNQMIVVELGTNPL 955
S N L+ +P + L+ LR+ H N+++ +++ +F + + + +G NPL
Sbjct: 816 SYNALQCIPPLAFQGLRSLRLLSLHGNDVSTLQEGIFADVTSLSHLAIGANPL 868
Score = 69.3 bits (168), Expect = 7e-12
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 23/251 (9%)
Frame = +2
Query: 650 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 829
LL L NKI I+ F++L+NL L L +NKI ++ G F L ++ L+L++N +
Sbjct: 385 LLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPF--I 442
Query: 830 PEKMPKTLQE-LRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK--- 997
+ K L + LR + E T R A L + ++ + + S E G +
Sbjct: 443 CDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYH 502
Query: 998 -----------------KLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXX 1126
+ S + + ++ IP+ +P S TEL L+ N+IS ++
Sbjct: 503 LNSECTSDVACPHKCRCEASVVECSSLKLSKIPERIPQSTTELRLNNNEISILEATGLFK 562
Query: 1127 XXXXXXXXXXFNS-ISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEH-KYIQVVYLHN 1300
N+ +S +++G+ + ELHL N+L + G+ ++ + L N
Sbjct: 563 KLSHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRN 622
Query: 1301 NNISAVGSNDF 1333
N IS + ++ F
Sbjct: 623 NRISCIHNDSF 633
Score = 49.7 bits (117), Expect = 5e-06
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +2
Query: 818 LKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 997
L +P +P+T+ E+R+ N I + F+ ++ ++L N + I AFQG++
Sbjct: 300 LTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAE--IAPDAFQGLR 357
Query: 998 KLSYIRIADTNITTIPQGLPPSLTELH---LDGNKISKVDXXXXXXXXXXXXXXXXFNSI 1168
L+ + + IT +P+G+ L L L+ NKI+ + N I
Sbjct: 358 SLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKI 417
Query: 1169 STVDNGSLANTPHLRELHLNNN 1234
++ G+ + ++ LHL N
Sbjct: 418 QSLAKGTFTSLRAIQTLHLAQN 439
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,744,753
Number of extensions: 1061367
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 3560
Number of HSP's successfully gapped: 248
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598010.1| decorin isoform a preproprotein [Homo sapiens]. 556 e-158
Alignment gi|NP_001911.1| decorin isoform a preproprotein [Homo sapiens]. 556 e-158
Alignment gi|NP_001702.1| biglycan preproprotein [Homo sapiens]. 323 2e-88
Alignment gi|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens]. 304 1e-82
Alignment gi|NP_598011.1| decorin isoform b precursor [Homo sapiens]. 238 8e-63
Alignment gi|NP_598013.1| decorin isoform d precursor [Homo sapiens]. 209 4e-54
Alignment gi|NP_001180264.1| asporin isoform 2 preproprotein [Homo sapien... 196 3e-50
Alignment gi|NP_598012.1| decorin isoform c precursor [Homo sapiens]. 166 6e-41
Alignment gi|NP_958505.1| prolargin precursor [Homo sapiens]. 139 8e-33
Alignment gi|NP_002716.1| prolargin precursor [Homo sapiens]. 139 8e-33
>ref|NP_598010.1| decorin isoform a preproprotein [Homo sapiens].
Length = 359
Score = 556 bits (1433), Expect = e-158
Identities = 278/330 (84%), Positives = 292/330 (88%), Gaps = 1/330 (0%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEP-LGPMCPFRC 571
MKATII LLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPE P+ + EP LGP+CPFRC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRC 58
Query: 572 QCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 751
QCHLRVVQCSDLGLDKVPKDLPPDT LLDLQNNKITEIKDGDFKNLKNLH LIL+NNKIS
Sbjct: 59 QCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKIS 118
Query: 752 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIV 931
K+SPGAF PLVKLERLYLSKNQLKELPEKMPKTLQELR HENEITKVRK FNGLNQMIV
Sbjct: 119 KVSPGAFTPLVKLERLYLSKNQLKELPEKMPKTLQELRAHENEITKVRKVTFNGLNQMIV 178
Query: 932 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDX 1111
+ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT+IPQGLPPSLTELHLDGNKIS+VD
Sbjct: 179 IELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVDA 238
Query: 1112 XXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVY 1291
FNSIS VDNGSLANTPHLRELHL+NNKL +VPGGLAEHKYIQVVY
Sbjct: 239 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVY 298
Query: 1292 LHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
LHNNNIS VGS+DFCPPG+ K+ SGVS
Sbjct: 299 LHNNNISVVGSSDFCPPGHNTKKASYSGVS 328
>ref|NP_001911.1| decorin isoform a preproprotein [Homo sapiens].
Length = 359
Score = 556 bits (1433), Expect = e-158
Identities = 278/330 (84%), Positives = 292/330 (88%), Gaps = 1/330 (0%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEP-LGPMCPFRC 571
MKATII LLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPE P+ + EP LGP+CPFRC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRC 58
Query: 572 QCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 751
QCHLRVVQCSDLGLDKVPKDLPPDT LLDLQNNKITEIKDGDFKNLKNLH LIL+NNKIS
Sbjct: 59 QCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKIS 118
Query: 752 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIV 931
K+SPGAF PLVKLERLYLSKNQLKELPEKMPKTLQELR HENEITKVRK FNGLNQMIV
Sbjct: 119 KVSPGAFTPLVKLERLYLSKNQLKELPEKMPKTLQELRAHENEITKVRKVTFNGLNQMIV 178
Query: 932 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDX 1111
+ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT+IPQGLPPSLTELHLDGNKIS+VD
Sbjct: 179 IELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVDA 238
Query: 1112 XXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVY 1291
FNSIS VDNGSLANTPHLRELHL+NNKL +VPGGLAEHKYIQVVY
Sbjct: 239 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVY 298
Query: 1292 LHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
LHNNNIS VGS+DFCPPG+ K+ SGVS
Sbjct: 299 LHNNNISVVGSSDFCPPGHNTKKASYSGVS 328
>ref|NP_001702.1| biglycan preproprotein [Homo sapiens].
Length = 368
Score = 323 bits (829), Expect = 2e-88
Identities = 166/328 (50%), Positives = 217/328 (66%), Gaps = 8/328 (2%)
Frame = +2
Query: 422 LAQVSWAGPFQQKGLFDFMLED--------EASGIGPEDRFPEVPELEPLGPMCPFRCQC 577
L +S A PF+Q+G +DF L+D EASG MCPF C C
Sbjct: 10 LLALSQALPFEQRGFWDFTLDDGPFMMNDEEASGADTSGVLDPDSVTPTYSAMCPFGCHC 69
Query: 578 HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 757
HLRVVQCSDLGL VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NNKISKI
Sbjct: 70 HLRVVQCSDLGLKSVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 129
Query: 758 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVE 937
AF+PL KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +E
Sbjct: 130 HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 189
Query: 938 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXX 1117
+G NPL++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++
Sbjct: 190 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 248
Query: 1118 XXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLH 1297
N I ++NGSL+ P LRELHL+NNKL +VP GL + K +QVVYLH
Sbjct: 249 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLARVPSGLPDLKLLQVVYLH 308
Query: 1298 NNNISAVGSNDFCPPGYTPKRLLISGVS 1381
+NNI+ VG NDFCP G+ KR +G+S
Sbjct: 309 SNNITKVGVNDFCPMGFGVKRAYYNGIS 336
>ref|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens].
Length = 379
Score = 304 bits (778), Expect = 1e-82
Identities = 149/279 (53%), Positives = 198/279 (70%)
Frame = +2
Query: 545 LGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 724
L PMCPF CQC+ RVV CSDLGL VP ++P DT +LDLQNNKI EIK+ DFK L +L+
Sbjct: 70 LFPMCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYG 129
Query: 725 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
LIL NNK++KI P AF KL RLYLS NQL E+P +PK+L ELR+HEN++ K++K
Sbjct: 130 LILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDT 189
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 1084
F G+N + V+E+ NPL ++GIE GAF+G+ + +IRIA+ +T++P+GLPP+L ELHLD
Sbjct: 190 FKGMNALHVLEMSANPLDNNGIEPGAFEGV-TVFHIRIAEAKLTSVPKGLPPTLLELHLD 248
Query: 1085 GNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLA 1264
NKIS V+ N I+ ++NGSLAN P +RE+HL NNKL K+P GL
Sbjct: 249 YNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLKKIPSGLP 308
Query: 1265 EHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
E KY+Q+++LH+N+I+ VG NDFCP K+ L S +S
Sbjct: 309 ELKYLQIIFLHSNSIARVGVNDFCPTVPKMKKSLYSAIS 347
>ref|NP_598011.1| decorin isoform b precursor [Homo sapiens].
Length = 250
Score = 238 bits (608), Expect = 8e-63
Identities = 118/150 (78%), Positives = 126/150 (84%)
Frame = +2
Query: 932 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDX 1111
+ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT+IPQGLPPSLTELHLDGNKIS+VD
Sbjct: 70 LELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVDA 129
Query: 1112 XXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVY 1291
FNSIS VDNGSLANTPHLRELHL+NNKL +VPGGLAEHKYIQVVY
Sbjct: 130 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVY 189
Query: 1292 LHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
LHNNNIS VGS+DFCPPG+ K+ SGVS
Sbjct: 190 LHNNNISVVGSSDFCPPGHNTKKASYSGVS 219
Score = 156 bits (395), Expect = 4e-38
Identities = 103/256 (40%), Positives = 134/256 (52%), Gaps = 46/256 (17%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEP-LGPMCPFRC 571
MKATII LLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPE P+ + EP LGP+CPFRC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRC 58
Query: 572 QCHLRVVQCSDL-------------------------------GLDKVPKDLPPDTALLD 658
QCHLRVVQCSDL + +P+ LPP L
Sbjct: 59 QCHLRVVQCSDLELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELH 118
Query: 659 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 838
L NKI+ + K L NL L L N IS + G+ A L L+L N+L +P
Sbjct: 119 LDGNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGG 178
Query: 839 MP--KTLQELRVHENEITKV------------RKAVFNGLNQMIVVELGTNPLKSSGIEN 976
+ K +Q + +H N I+ V +KA ++G V L +NP++ I+
Sbjct: 179 LAEHKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSG------VSLFSNPVQYWEIQP 232
Query: 977 GAFQGMKKLSYIRIAD 1024
F+ + S I++ +
Sbjct: 233 STFRCVYVRSAIQLGN 248
>ref|NP_598013.1| decorin isoform d precursor [Homo sapiens].
Length = 172
Score = 209 bits (533), Expect = 4e-54
Identities = 104/129 (80%), Positives = 110/129 (85%), Gaps = 1/129 (0%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEP-LGPMCPFRC 571
MKATII LLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPE P+ + EP LGP+CPFRC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRC 58
Query: 572 QCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 751
QCHLRVVQCSDLGLDKVPKDLPPDT LLDLQNNKITEIKDGDFKNLKNLH + L NN IS
Sbjct: 59 QCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNIS 118
Query: 752 KISPGAFAP 778
+ F P
Sbjct: 119 VVGSSDFCP 127
Score = 64.3 bits (155), Expect = 3e-10
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 1202 PHLRELHLNNNKLNKVPGGLAEH-KYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGV 1378
P L L NNK+ ++ G ++ K + VVYLHNNNIS VGS+DFCPPG+ K+ SGV
Sbjct: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 140
Query: 1379 S 1381
S
Sbjct: 141 S 141
>ref|NP_001180264.1| asporin isoform 2 preproprotein [Homo sapiens].
Length = 242
Score = 196 bits (499), Expect = 3e-50
Identities = 96/173 (55%), Positives = 128/173 (73%)
Frame = +2
Query: 545 LGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 724
L PMCPF CQC+ RVV CSDLGL VP ++P DT +LDLQNNKI EIK+ DFK L +L+
Sbjct: 70 LFPMCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYG 129
Query: 725 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
LIL NNK++KI P AF KL RLYLS NQL E+P +PK+L ELR+HEN++ K++K
Sbjct: 130 LILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDT 189
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 1063
F G+N + V+E+ NPL ++GIE GAF+G+ + +IRIA+ +T++P+ PS
Sbjct: 190 FKGMNALHVLEMSANPLDNNGIEPGAFEGV-TVFHIRIAEAKLTSVPKDNLPS 241
>ref|NP_598012.1| decorin isoform c precursor [Homo sapiens].
Length = 212
Score = 166 bits (419), Expect = 6e-41
Identities = 81/111 (72%), Positives = 87/111 (78%)
Frame = +2
Query: 1049 GLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLN 1228
GLPPSLTELHLDGNKIS+VD FNSIS VDNGSLANTPHLRELHL+
Sbjct: 71 GLPPSLTELHLDGNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLD 130
Query: 1229 NNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
NNKL +VPGGLAEHKYIQVVYLHNNNIS VGS+DFCPPG+ K+ SGVS
Sbjct: 131 NNKLTRVPGGLAEHKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVS 181
Score = 164 bits (414), Expect = 2e-40
Identities = 103/225 (45%), Positives = 131/225 (58%), Gaps = 15/225 (6%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEP-LGPMCPFRC 571
MKATII LLLAQVSWAGPFQQ+GLFDFMLEDEASGIGPE P+ + EP LGP+CPFRC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRC 58
Query: 572 QCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 751
QCHLRVVQCSDLG LPP L L NKI+ + K L NL L L N IS
Sbjct: 59 QCHLRVVQCSDLG-------LPPSLTELHLDGNKISRVDAASLKGLNNLAKLGLSFNSIS 111
Query: 752 KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV----------- 892
+ G+ A L L+L N+L +P + K +Q + +H N I+ V
Sbjct: 112 AVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVYLHNNNISVVGSSDFCPPGHN 171
Query: 893 -RKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 1024
+KA ++G V L +NP++ I+ F+ + S I++ +
Sbjct: 172 TKKASYSG------VSLFSNPVQYWEIQPSTFRCVYVRSAIQLGN 210
>ref|NP_958505.1| prolargin precursor [Homo sapiens].
Length = 382
Score = 139 bits (349), Expect = 8e-33
Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 7/285 (2%)
Frame = +2
Query: 506 PEDRFPEVPELEP-LGPMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
P D P +P P + P CP C C + C L KVP +PP L LQNN
Sbjct: 55 PTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPPRIHYLYLQNNF 113
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 853
ITE+ F+N L + L NN+I KI L L LY+ KNQL+E+P +P+ L
Sbjct: 114 ITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPRNL 173
Query: 854 QELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 1033
++LR+ +N I+++ VF+ L +++++L N L + F G+K L + +A +
Sbjct: 174 EQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSDGVFKPDTFHGLKNLMQLNLAHNIL 233
Query: 1034 TTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNG---SLANTP 1204
+P +P ++ +L+LD NKI + +N ++ D G + N
Sbjct: 234 RKMPPRVPTAIHQLYLDSNKIETIPNGYFKSFPNLAFIRLNYNKLT--DRGLPKNSFNIS 291
Query: 1205 HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+L LHL++N+++ VP A + ++ +YL+NN+I + CP
Sbjct: 292 NLLVLHLSHNRISSVP---AINNRLEHLYLNNNSIEKINGTQICP 333
>ref|NP_002716.1| prolargin precursor [Homo sapiens].
Length = 382
Score = 139 bits (349), Expect = 8e-33
Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 7/285 (2%)
Frame = +2
Query: 506 PEDRFPEVPELEP-LGPMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
P D P +P P + P CP C C + C L KVP +PP L LQNN
Sbjct: 55 PTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPPRIHYLYLQNNF 113
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 853
ITE+ F+N L + L NN+I KI L L LY+ KNQL+E+P +P+ L
Sbjct: 114 ITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPRNL 173
Query: 854 QELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 1033
++LR+ +N I+++ VF+ L +++++L N L + F G+K L + +A +
Sbjct: 174 EQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSDGVFKPDTFHGLKNLMQLNLAHNIL 233
Query: 1034 TTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNG---SLANTP 1204
+P +P ++ +L+LD NKI + +N ++ D G + N
Sbjct: 234 RKMPPRVPTAIHQLYLDSNKIETIPNGYFKSFPNLAFIRLNYNKLT--DRGLPKNSFNIS 291
Query: 1205 HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+L LHL++N+++ VP A + ++ +YL+NN+I + CP
Sbjct: 292 NLLVLHLSHNRISSVP---AINNRLEHLYLNNNSIEKINGTQICP 333
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,036,765
Number of extensions: 1246832
Number of successful extensions: 4993
Number of sequences better than 1.0e-05: 173
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 303
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999085.1| decorin precursor [Sus scrofa]. 613 e-176
Alignment gi|XP_003135523.1| PREDICTED: biglycan [Sus scrofa]. 330 9e-91
Alignment gi|NP_001230818.1| asporin [Sus scrofa]. 299 3e-81
Alignment gi|XP_003130154.1| PREDICTED: prolargin-like [Sus scrofa]. 142 3e-34
Alignment gi|NP_001230268.1| lumican [Sus scrofa]. 120 1e-27
Alignment gi|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus ... 118 9e-27
Alignment gi|XP_001927163.2| PREDICTED: keratocan-like [Sus scrofa]. 115 8e-26
Alignment gi|XP_003357425.1| PREDICTED: fibromodulin-like isoform 2 [Sus ... 110 1e-24
Alignment gi|XP_003130153.1| PREDICTED: fibromodulin-like isoform 1 [Sus ... 110 1e-24
Alignment gi|XP_001926484.1| PREDICTED: leucine-rich repeat transmembrane... 110 2e-24
>ref|NP_999085.1| decorin precursor [Sus scrofa].
Length = 360
Score = 613 bits (1582), Expect = e-176
Identities = 306/329 (93%), Positives = 308/329 (93%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 574
MKATI+FLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ
Sbjct: 1 MKATIVFLLLAQVSWAGPFQQKGLFDFMLEDEASGIGPEDRFPEVPELEPLGPMCPFRCQ 60
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK
Sbjct: 61 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 120
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV
Sbjct: 121 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 180
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVD
Sbjct: 181 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDAA 240
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
FNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL
Sbjct: 241 SLKGLNNLAKLGLGFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 300
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
HNNNISAVGSNDFCPPGY K+ SGVS
Sbjct: 301 HNNNISAVGSNDFCPPGYNTKKASYSGVS 329
>ref|XP_003135523.1| PREDICTED: biglycan [Sus scrofa].
Length = 369
Score = 330 bits (847), Expect = 9e-91
Identities = 169/329 (51%), Positives = 221/329 (67%), Gaps = 9/329 (2%)
Frame = +2
Query: 422 LAQVSWAGPFQQKGLFDFMLED--------EASGIGPEDRFPEVPELEP-LGPMCPFRCQ 574
L +S A PF+QK +DF L+D EASG P++ L P MCPF C
Sbjct: 10 LLALSQALPFEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCH 69
Query: 575 CHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 754
CHLRVVQCSDLGL VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NNKISK
Sbjct: 70 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 129
Query: 755 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVV 934
I AF+PL KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +
Sbjct: 130 IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCI 189
Query: 935 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXX 1114
E+G NPL++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++
Sbjct: 190 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 248
Query: 1115 XXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYL 1294
N I ++NGSL+ P LRELHL+NNKL++VP GL + K +QVVYL
Sbjct: 249 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 308
Query: 1295 HNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
H NNI+ VG NDFCP G+ KR +G+S
Sbjct: 309 HTNNITKVGVNDFCPVGFGVKRAYYNGIS 337
>ref|NP_001230818.1| asporin [Sus scrofa].
Length = 370
Score = 299 bits (765), Expect = 3e-81
Identities = 162/339 (47%), Positives = 218/339 (64%), Gaps = 10/339 (2%)
Frame = +2
Query: 395 MKATIIFLLLAQVSWAGPFQQK--GLFDFMLED-EASGIGPEDR--FPEVPELEP----- 544
MK ++ L L S F+ L + ML+D E G +D FP + P
Sbjct: 1 MKEYVLLLFLTLCSAKPLFRPSYMTLKNMMLKDMEEEGDDDDDNSLFPTREPINPFFPFD 60
Query: 545 LGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 724
L P CPF CQC+ RVV CSDLGL VP ++P DT ++DLQNNKI EIK+ DFK L +L+
Sbjct: 61 LFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYA 120
Query: 725 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAV 904
LIL NNK++KI P AF KL RLYLS NQL E+P +PK+L ELR+HEN++ K++K
Sbjct: 121 LILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKET 180
Query: 905 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 1084
F G+N + V+E+ NPL ++GIE GAF+G+ + +IRIA+ +T+IP+ LP +L ELHLD
Sbjct: 181 FKGMNALHVLEMSANPLDNNGIEPGAFEGV-TVFHIRIAEAKLTSIPKELPSTLLELHLD 239
Query: 1085 GNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLA 1264
NKIS V+ N I+ ++NGSLAN P +RE+HL NNKL K+P GL
Sbjct: 240 YNKISTVELEDFKRYKELQRLGLGNNRITDIENGSLANIPRVREIHLENNKLKKIPSGLQ 299
Query: 1265 EHKYIQVVYLHNNNISAVGSNDFCPPGYTPKRLLISGVS 1381
E KY+Q+++LH+N+I+ VG NDFCP K+ L S +S
Sbjct: 300 ELKYLQMIFLHSNSITKVGVNDFCPTVPKMKKSLYSAIS 338
>ref|XP_003130154.1| PREDICTED: prolargin-like [Sus scrofa].
Length = 381
Score = 142 bits (359), Expect = 3e-34
Identities = 90/285 (31%), Positives = 144/285 (50%), Gaps = 7/285 (2%)
Frame = +2
Query: 506 PEDRFPEVPELEP-LGPMCPFRCQCHL---RVVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
P D P +P P + P CP C C + C L KVP +P L LQNN
Sbjct: 54 PTDLPPPLPPGPPSVFPDCPRECYCPSDFPSALYCDSRNLRKVPV-IPSRIHYLYLQNNF 112
Query: 674 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 853
ITE+ FKN L + L NN+I K+ L L LY+ KNQL+E+P +P+ L
Sbjct: 113 ITELPVESFKNATGLRWINLDNNRIRKVDQRVLEKLPSLVFLYMEKNQLEEVPSALPRNL 172
Query: 854 QELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 1033
++LR+ +N+I+++ VF+ L +++++L N L + FQG+K L + +A +
Sbjct: 173 EQLRLSQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNIL 232
Query: 1034 TTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNG---SLANTP 1204
+P +P ++ +L+LD NKI + +N +S D G + N
Sbjct: 233 RKMPPKVPTAIHQLYLDSNKIETIPNGYFKGFPNLAFIRLNYNKLS--DRGLPKNSFNIS 290
Query: 1205 HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFCP 1339
+L LHL++NK++ VP A + ++ +YL+NN+I + CP
Sbjct: 291 NLLVLHLSHNKISNVP---AINNKLEHLYLNNNSIEKINGTQICP 332
>ref|NP_001230268.1| lumican [Sus scrofa].
Length = 341
Score = 120 bits (302), Expect = 1e-27
Identities = 85/268 (31%), Positives = 135/268 (50%), Gaps = 6/268 (2%)
Frame = +2
Query: 551 PMCPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 721
P C C C + + C +L L VP +PP L L+NN+I I D F+N+ +L
Sbjct: 38 PNCAPECNCPESYPTAMYCDELKLKSVPM-VPPGIKYLYLRNNQIDHIDDKAFENVTDLE 96
Query: 722 TLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 895
LIL +N + SKI F+ L +L++L+++ N L E +PK+L +L++ N+I+K+
Sbjct: 97 WLILDHNLLENSKIKGRVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKLG 156
Query: 896 KAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 1075
F+GL + + L N LK + + AF+G+K L Y+ ++ +T +P GLP SL L
Sbjct: 157 S--FDGLVNLTFIHLQHNQLKEDAV-SAAFRGLKGLEYLDLSFNQMTKLPSGLPVSLLTL 213
Query: 1076 HLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVD-NGSLANTPHLRELHLNNNKLNKVP 1252
+LD NKIS + N ++ G+ N L EL L+ NKL +P
Sbjct: 214 YLDNNKISNIPDEYFKHFSGLQYLRLSHNELADSGIPGNSFNLSSLLELDLSYNKLKNIP 273
Query: 1253 GGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
++ ++ YL N + FC
Sbjct: 274 ---TVNENLENYYLEVNELEKFEVKSFC 298
>ref|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus scrofa].
Length = 593
Score = 118 bits (295), Expect = 9e-27
Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 6/279 (2%)
Frame = +2
Query: 491 ASGIGPEDRFPEVPEL-EPLGPMCPFRCQC-HLRVVQCSDLGLDKVPKDLPPDTALLDLQ 664
A G+ + FP + E +P CP RC C V C L L P ++ L LQ
Sbjct: 35 ALGMEEDASFPHLGESSQPPPRACPPRCSCPRADTVDCDGLELRVFPDNITRAAQHLSLQ 94
Query: 665 NNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEK 838
NN++ E+ + L +L TL L NN IS + AF L +L+ +Y++ N+L P+
Sbjct: 95 NNQLQELPYNELSRLSDLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNRLSVAPQF 154
Query: 839 MPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 1018
+P++L+ + NE+T++ F + V L N L ++G+ AF+G + ++ + +
Sbjct: 155 LPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAVATLSL 214
Query: 1019 ADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSI--STVDNGSL 1192
+ ++ +P LPPSL LHL N ISKV N + S +D +
Sbjct: 215 SSNRLSYVPPSLPPSLERLHLQNNIISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTF 274
Query: 1193 ANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNI 1309
+ L L L++N+L VP GL + V++L N I
Sbjct: 275 SKLHRLEYLDLSHNQLATVPAGLPH--TLAVLHLGRNRI 311
Score = 99.4 bits (246), Expect = 4e-21
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 4/244 (1%)
Frame = +2
Query: 611 LDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLV 784
L P+ LP + DL N++TEI F L ++ L NN++S + P AF
Sbjct: 148 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 207
Query: 785 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSS 964
+ L LS N+L +P +P +L+ L + N I+KV + + + + L N L S
Sbjct: 208 AVATLSLSSNRLSYVPPSLPPSLERLHLQNNIISKVPRGALSRQTHLRELYLQHNQLTDS 267
Query: 965 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXX 1144
G++ F + +L Y+ ++ + T+P GLP +L LHL N+I V+
Sbjct: 268 GLDATTFSKLHRLEYLDLSHNQLATVPAGLPHTLAVLHLGRNRIRWVEAARLRGMRGLRY 327
Query: 1145 XXXXFNSISTVDNGSLANTP--HLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAV 1318
N + + A P L LHL N L+++P L H ++ + L +N+++ +
Sbjct: 328 LLLQHNQLGATGLPARALRPLRGLHTLHLYGNGLDRMPQALPRH--LRSLVLPHNHVTML 385
Query: 1319 GSND 1330
G+ D
Sbjct: 386 GARD 389
Score = 84.0 bits (206), Expect = 2e-16
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 4/213 (1%)
Frame = +2
Query: 608 GLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPL 781
GLD++P+ LP L L +N +T + D L L L N ++ ++ AF L
Sbjct: 360 GLDRMPQALPRHLRSLVLPHNHVTMLGARDLAATPGLAELNLAYNHLASARVHRRAFRRL 419
Query: 782 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKS 961
L L L+ NQL +LP +P +L LR+ N++ + GL+Q+ + L N L+
Sbjct: 420 RALRSLDLAGNQLTQLPAGLPASLNTLRLQRNQLRVLEPEPLAGLDQLQELSLAHNRLRV 479
Query: 962 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXX 1141
I G + + L + ++ ++ +P LP +L ELHL GN+IS V
Sbjct: 480 GDIGPGTWHELPALQVLDLSHNELSFVPPDLPEALEELHLQGNRISHVGPEAFISTPRLR 539
Query: 1142 XXXXXFNSI--STVDNGSLANTPHLRELHLNNN 1234
N + +++ + PHLR + N
Sbjct: 540 ALFLRANRLHMTSISPEAFLGLPHLRMVDTTGN 572
>ref|XP_001927163.2| PREDICTED: keratocan-like [Sus scrofa].
Length = 353
Score = 115 bits (287), Expect = 8e-26
Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 6/271 (2%)
Frame = +2
Query: 557 CPFRCQC---HLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 727
CP C C + C + GL ++P +P L L+NN I I + F+N L +
Sbjct: 42 CPRECFCPPSFPTALYCENRGLKEIPA-IPSRIWYLYLENNLIETIPEKPFENATQLRWI 100
Query: 728 ILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKA 901
L NKI+ I GA + L KL L+L N+L+E+P +P++L++L++ N+++++ +
Sbjct: 101 NLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQG 160
Query: 902 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 1081
F+ L + +++L N L + + F+G+K L + +A + +P LP + +L L
Sbjct: 161 TFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFL 220
Query: 1082 DGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLA-NTPHLRELHLNNNKLNKVPGG 1258
D N I + N +S S N + +L L++N+L KVP
Sbjct: 221 DNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFNVSSILDLQLSHNRLTKVPRI 280
Query: 1259 LAEHKYIQVVYLHNNNISAVGSNDFCPPGYT 1351
A ++Q ++L +N I V + CP T
Sbjct: 281 SA---HLQHLHLDHNKIKNVNVSVICPTSPT 308
>ref|XP_003357425.1| PREDICTED: fibromodulin-like isoform 2 [Sus scrofa].
Length = 376
Score = 110 bits (276), Expect = 1e-24
Identities = 80/286 (27%), Positives = 136/286 (47%), Gaps = 8/286 (2%)
Frame = +2
Query: 503 GPEDRFPEVPELEPLGPMCPFRCQCHLR---VVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
GP + P EP CP C C + C + L +P +P + QNN+
Sbjct: 60 GPAYAYGSPPPPEPRD--CPQECDCPPNFPTAMYCDNRNLKYLPF-VPSRMKYVYFQNNQ 116
Query: 674 ITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMPK 847
I+ I++G F N L + L N+I+ K+ F+ L LERLYL N L +P +P+
Sbjct: 117 ISSIQEGVFDNATGLLWIALHGNQITSDKVGKKVFSKLRHLERLYLDHNNLTRMPGPLPR 176
Query: 848 TLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 1027
+L+EL + N+I++V GL + + L N ++ G + +G++ L + ++
Sbjct: 177 SLRELHLDHNQISRVPNNALEGLENLTALYLQHNEIQEVG---SSMRGLRSLILLDLSYN 233
Query: 1028 NITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANT-- 1201
++ +P GLP +L +L+L+ N + V NS++ +NG +NT
Sbjct: 234 HLRKVPDGLPSALEQLYLEHNNVYSVPDSYFRGSPKLLYVRLSHNSLT--NNGLASNTFN 291
Query: 1202 -PHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
L EL L+ N+L K+P + ++ +YL N I+ + FC
Sbjct: 292 SSSLLELDLSYNQLQKIP---PVNTNLENLYLQGNRINEFSISSFC 334
>ref|XP_003130153.1| PREDICTED: fibromodulin-like isoform 1 [Sus scrofa].
Length = 376
Score = 110 bits (276), Expect = 1e-24
Identities = 80/286 (27%), Positives = 136/286 (47%), Gaps = 8/286 (2%)
Frame = +2
Query: 503 GPEDRFPEVPELEPLGPMCPFRCQCHLR---VVQCSDLGLDKVPKDLPPDTALLDLQNNK 673
GP + P EP CP C C + C + L +P +P + QNN+
Sbjct: 60 GPAYAYGSPPPPEPRD--CPQECDCPPNFPTAMYCDNRNLKYLPF-VPSRMKYVYFQNNQ 116
Query: 674 ITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMPK 847
I+ I++G F N L + L N+I+ K+ F+ L LERLYL N L +P +P+
Sbjct: 117 ISSIQEGVFDNATGLLWIALHGNQITSDKVGKKVFSKLRHLERLYLDHNNLTRMPGPLPR 176
Query: 848 TLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 1027
+L+EL + N+I++V GL + + L N ++ G + +G++ L + ++
Sbjct: 177 SLRELHLDHNQISRVPNNALEGLENLTALYLQHNEIQEVG---SSMRGLRSLILLDLSYN 233
Query: 1028 NITTIPQGLPPSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGSLANT-- 1201
++ +P GLP +L +L+L+ N + V NS++ +NG +NT
Sbjct: 234 HLRKVPDGLPSALEQLYLEHNNVYSVPDSYFRGSPKLLYVRLSHNSLT--NNGLASNTFN 291
Query: 1202 -PHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDFC 1336
L EL L+ N+L K+P + ++ +YL N I+ + FC
Sbjct: 292 SSSLLELDLSYNQLQKIP---PVNTNLENLYLQGNRINEFSISSFC 334
>ref|XP_001926484.1| PREDICTED: leucine-rich repeat transmembrane protein FLRT3 isoform 2
[Sus scrofa].
Length = 649
Score = 110 bits (274), Expect = 2e-24
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 2/274 (0%)
Frame = +2
Query: 518 FPEVPELEPLGPMCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTALLDLQNNKITEIKDGD 697
F +V L + CP C+C + C+D L +P +P D L LQNN+I G
Sbjct: 18 FLQVAPLSAMSKSCPSVCRCDAGFIYCNDRFLTSIPTGIPEDATTLYLQNNQINNA--GI 75
Query: 698 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 877
+LKNL +K+ER+YL N L E P +PK ++EL + EN
Sbjct: 76 PSDLKNL---------------------LKVERIYLYHNSLDEFPTNLPKYVKELHLQEN 114
Query: 878 EITKVRKAVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 1057
I + + + + + L N + + IE GAF+ L + ++ +++TIP GLP
Sbjct: 115 NIRTITYDSLSKIPYLEELHLDDNSVSAVSIEEGAFRDSNYLRLLFLSRNHLSTIPWGLP 174
Query: 1058 PSLTELHLDGNKISKVDXXXXXXXXXXXXXXXXFNSISTVDNGS--LANTPHLRELHLNN 1231
++ EL LD N+IS + N ++ G N +L EL L
Sbjct: 175 RTIEELRLDDNRISTISSPSLQGLTSLKRLVLDGNLLNNHGLGDKVFFNLVNLTELSLVR 234
Query: 1232 NKLNKVPGGLAEHKYIQVVYLHNNNISAVGSNDF 1333
N L P L ++ +YL +N+I+ V N F
Sbjct: 235 NSLTAAPVNLPGTN-LRKLYLQDNHINRVPPNAF 267
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,229,936
Number of extensions: 772385
Number of successful extensions: 3065
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 2462
Number of HSP's successfully gapped: 208
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007568
(1385 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 720 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 1 ttccaagtcgttgctccactactatactccagaagcagtttagaatcttaagcagatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109477 ttccaagtcgttgctccactactatactccagaagcagtttagaatcttaagcagatgca 96109536
Query: 61 agaggaataaagcacttaaatagggagaaaaaagaccgataaagtttctggctacaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109537 agaggaataaagcacttaaatagggagaaaaaagaccgataaagtttctggctacaatac 96109596
Query: 121 aagagacatatcattaccatatgatctaatgtgggtgtcagccggattgcgttcattgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109597 aagagacatatcattaccatatgatctaatgtgggtgtcagccggattgcgttcattgag 96109656
Query: 181 ggaaaccttattttttaactgtgctatggagtagaagcaggaggttttcaacctagtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109657 ggaaaccttattttttaactgtgctatggagtagaagcaggaggttttcaacctagtgac 96109716
Query: 241 agtcagagcagcacctaccccctccttctttccacacctgcaaactcttgcttgggctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109717 agtcagagcagcacctaccccctccttctttccacacctgcaaactcttgcttgggctga 96109776
Query: 301 atatttagtgtaattacatctcagctttgagggctcctgtggcaaatccccggattaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96109777 atatttagtgtaattacatctcagctttgagggctcctgtggcaaatccccggattaaaa 96109836
Query: 361 ggt 363
|||
Sbjct: 96109837 ggt 96109839
Score = 498 bits (251), Expect = e-138
Identities = 251/251 (100%)
Strand = Plus / Plus
Query: 360 aggttccttggttgtgaaaatacatgagataaatcatgaaggcaactatcatcttcctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96113689 aggttccttggttgtgaaaatacatgagataaatcatgaaggcaactatcatcttcctct 96113748
Query: 420 tgcttgcacaagtttcctgggctggaccatttcaacagaaaggcttatttgactttatgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96113749 tgcttgcacaagtttcctgggctggaccatttcaacagaaaggcttatttgactttatgc 96113808
Query: 480 tagaagatgaggcttctgggataggcccagaagaccgctttcctgaagttcctgaattag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96113809 tagaagatgaggcttctgggataggcccagaagaccgctttcctgaagttcctgaattag 96113868
Query: 540 agcctctgggacccatgtgtcccttccgctgtcaatgccatcttcgagttgtccaatgtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96113869 agcctctgggacccatgtgtcccttccgctgtcaatgccatcttcgagttgtccaatgtt 96113928
Query: 600 ctgatttgggt 610
|||||||||||
Sbjct: 96113929 ctgatttgggt 96113939
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 722 acactgattctcatcaacaacaaaattagcaaaatcagccctggagcatttgcacctttg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96130260 acactgattctcatcaacaacaaaattagcaaaatcagccctggagcatttgcacctttg 96130319
Query: 782 gtgaaattggaacgactttatctatccaagaatcaactgaaggaattgccagagaaaatg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96130320 gtgaaattggaacgactttatctatccaagaatcaactgaaggaattgccagagaaaatg 96130379
Query: 842 cccaaaactcttcaggagctgcgtgtccatgagaatgagatcaccaaagtgcgaaaggct 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96130380 cccaaaactcttcaggagctgcgtgtccatgagaatgagatcaccaaagtgcgaaaggct 96130439
Query: 902 gtgttcaatggattgaaccagatgatcgtcgtag 935
||||||||||||||||||||||||||||||||||
Sbjct: 96130440 gtgttcaatggattgaaccagatgatcgtcgtag 96130473
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1144 gttgggactgggtttcaatagcatctcaactgttgacaatggctctctggccaacactcc 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96139719 gttgggactgggtttcaatagcatctcaactgttgacaatggctctctggccaacactcc 96139778
Query: 1204 tcatttgagggaacttcatctgaacaacaacaagcttaacaaagtgcctggtgggctggc 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96139779 tcatttgagggaacttcatctgaacaacaacaagcttaacaaagtgcctggtgggctggc 96139838
Query: 1264 agagcataagtacatccaggt 1284
|||||||||||||||||||||
Sbjct: 96139839 agagcataagtacatccaggt 96139859
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 932 gtagaacttggcaccaacccgctgaagagctcaggcattgaaaacggagctttccaggga 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96131427 gtagaacttggcaccaacccgctgaagagctcaggcattgaaaacggagctttccaggga 96131486
Query: 992 atgaagaagctctcctacatccgcatcgctgacaccaacattaccaccatccctcaaggt 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96131487 atgaagaagctctcctacatccgcatcgctgacaccaacattaccaccatccctcaaggt 96131546
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 932 gtagaacttggcaccaacccgctgaagagctcaggcattgaaaacggagctttccaggga 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103467735 gtagaacttggcaccaacccgctgaagagctcaggcattgaaaacggagctttccaggga 103467676
Query: 992 atgaagaagctctcctacatccgcatcgctgacaccaacattaccaccatccctcaaggt 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103467675 atgaagaagctctcctacatccgcatcgctgacaccaacattaccaccatccctcaaggt 103467616
Score = 202 bits (102), Expect = 4e-49
Identities = 111/114 (97%)
Strand = Plus / Plus
Query: 608 ggtctggacaaagtgcccaaagatcttccacctgacactgccctgctggatctgcaaaac 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96125595 ggtctggacaaagtgcccaaagatcttccacctgacactgccctgctggatctgcaaaac 96125654
Query: 668 aacaaaataactgaaatcaaagatggagactttaagaacctgaagaaccttcat 721
|||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct: 96125655 aacaaaataactgaaatcaaagatggagactttatgaacgtgaagatccttcat 96125708
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1048 aggtcttcctccttcccttactgaattacatcttgatggcaacaaaatcagcaaagttga 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96135747 aggtcttcctccttcccttactgaattacatcttgatggcaacaaaatcagcaaagttga 96135806
Query: 1108 tgcagctagcctaaaaggactgaataatttggctaagt 1145
||||||||||||||||||||||||||||||||||||||
Sbjct: 96135807 tgcagctagcctaaaaggactgaataatttggctaagt 96135844
Score = 186 bits (94), Expect = 2e-44
Identities = 155/165 (93%), Gaps = 9/165 (5%)
Strand = Plus / Minus
Query: 771 ttgcacctttggtgaaattggaacgactttatctatccaagaatcaactgaaggaattgc 830
||||||||||| |||||| ||||||||||||||| || ||| |||||||||||||||||
Sbjct: 103468844 ttgcacctttg-tgaaat-ggaacgactttatctttc--aga-tcaactgaaggaattgc 103468790
Query: 831 cagagaaaatgcccaaaactcttcaggagctgcgtgtccatgagaatgagatcaccaaag 890
||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 103468789 -agagaaa-tgcccaaaactcttcaggagctgcgtgtc-atgaga-tgagatcaccaaag 103468734
Query: 891 tgcgaaaggctgtgttcaatggattgaaccagatgatcgtcgtag 935
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103468733 tgcgaaaggctgtgttcaatggattgaaccagatgatcgtcgtag 103468689
Score = 165 bits (83), Expect = 8e-38
Identities = 90/91 (98%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1280 caggttgtctaccttcataacaacaacatctctgcagtcggctctaatgacttctgcccg 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96143319 caggttgtctaccttcataacaacaacatctctgcagtcggctctaatgacttctgcccg 96143378
Query: 1340 cctggatac-acaccaaaaaggcttcttatt 1369
||||||||| |||||||||||||||||||||
Sbjct: 96143379 cctggatacaacaccaaaaaggcttcttatt 96143409
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,874,073
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 10
Length of query: 1385
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1364
Effective length of database: 2,808,413,156
Effective search space: 3830675544784
Effective search space used: 3830675544784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)