Animal-Genome cDNA 20110601C-007576


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001169.1| microtubule-associated proteins 1A/1B light ...   249   3e-66
Alignment   gi|NP_001039640.1| microtubule-associated proteins 1A/1B light ...   206   4e-53
Alignment   gi|NP_001094528.1| microtubule-associated proteins 1A/1B light ...   129   4e-30
Alignment   gi|NP_777100.1| gamma-aminobutyric acid receptor-associated pro...    91   1e-18
Alignment   gi|NP_001028788.1| gamma-aminobutyric acid receptor-associated ...    77   4e-14
Alignment   gi|NP_001029220.1| gamma-aminobutyric acid receptor-associated ...    75   1e-13

>ref|NP_001001169.1| microtubule-associated proteins 1A/1B light chain 3B [Bos taurus].
          Length = 125

 Score =  249 bits (636), Expect = 3e-66
 Identities = 125/125 (100%), Positives = 125/125 (100%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120

Query: 485 MKLSV 499
           MKLSV
Sbjct: 121 MKLSV 125


>ref|NP_001039640.1| microtubule-associated proteins 1A/1B light chain 3A [Bos taurus].
          Length = 121

 Score =  206 bits (523), Expect = 4e-53
 Identities = 100/120 (83%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRR+F  R ++V+ IREQHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120


>ref|NP_001094528.1| microtubule-associated proteins 1A/1B light chain 3C [Bos taurus].
          Length = 148

 Score =  129 bits (325), Expect = 4e-30
 Identities = 64/119 (53%), Positives = 84/119 (70%)
 Frame = +2

Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMS 307
           PS + FKQR++   R E+V  IR + P KIPVI+ERY  EK LP LDKTKFLVP  + M+
Sbjct: 8   PSLRPFKQRKSLATRREEVAGIRVKFPGKIPVIVERYPREKFLPRLDKTKFLVPQELTMT 67

Query: 308 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           + + +IR R+ L A +AF+LLVN  S+ S++  + E+Y   KDEDGF+YM YASQE FG
Sbjct: 68  QFLSVIRSRMVLGATEAFYLLVNNKSLGSMNVTMAEIYRDYKDEDGFVYMTYASQEMFG 126


>ref|NP_777100.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Bos
           taurus].
          Length = 117

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>ref|NP_001028788.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Bos
           taurus].
          Length = 117

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|NP_001029220.1| gamma-aminobutyric acid receptor-associated protein [Bos taurus].
          Length = 117

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,978,002
Number of extensions: 926307
Number of successful extensions: 2304
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 6
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536756.2| PREDICTED: similar to microtubule-associated pr...   243   2e-64
Alignment   gi|XP_863854.1| PREDICTED: similar to microtubule-associated pr...   205   7e-53
Alignment   gi|XP_534391.2| PREDICTED: similar to microtubule-associated pr...   205   7e-53
Alignment   gi|XP_854448.1| PREDICTED: similar to microtubule-associated pr...   134   2e-31
Alignment   gi|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associat...    91   2e-18
Alignment   gi|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (...    77   4e-14
Alignment   gi|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid r...    75   1e-13
Alignment   gi|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid r...    57   3e-08
Alignment   gi|XP_868465.1| PREDICTED: hypothetical protein XP_863372 [Cani...    52   1e-06

>ref|XP_536756.2| PREDICTED: similar to microtubule-associated proteins 1A/1B light
           chain 3 [Canis familiaris].
          Length = 125

 Score =  243 bits (620), Expect = 2e-64
 Identities = 123/125 (98%), Positives = 123/125 (98%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMVYASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

Query: 485 MKLSV 499
           MKL V
Sbjct: 121 MKLFV 125


>ref|XP_863854.1| PREDICTED: similar to microtubule-associated protein 1 light chain
           3 alpha isoform 2 [Canis familiaris].
          Length = 121

 Score =  205 bits (521), Expect = 7e-53
 Identities = 99/120 (82%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRRTF  R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKD+DGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120


>ref|XP_534391.2| PREDICTED: similar to microtubule-associated protein 1 light chain
           3 alpha isoform 1 [Canis familiaris].
          Length = 121

 Score =  205 bits (521), Expect = 7e-53
 Identities = 99/120 (82%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRRTF  R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKD+DGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120


>ref|XP_854448.1| PREDICTED: similar to microtubule-associated protein 1 light chain
           3 gamma [Canis familiaris].
          Length = 169

 Score =  134 bits (337), Expect = 2e-31
 Identities = 68/118 (57%), Positives = 84/118 (71%)
 Frame = +2

Query: 131 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 310
           S + FKQR++   R E+V  IR + P KIPVI+ERY  EK LP+LDKTKFLVP  + M +
Sbjct: 9   SLRPFKQRKSLATRQEEVAGIRAKFPNKIPVIVERYPREKFLPLLDKTKFLVPQELTMIQ 68

Query: 311 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
            + IIR RL L A +AF+LLVN  S+VS+S  + EVY   KDEDGF+YM YASQE FG
Sbjct: 69  FLSIIRSRLVLGATEAFYLLVNNRSLVSMSMTMAEVYRDYKDEDGFVYMTYASQEMFG 126


>ref|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associated protein like 2
           [Canis familiaris].
          Length = 117

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>ref|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (GABA(A))
           receptor-associated protein-like 1 isoform 1 [Canis
           familiaris].
          Length = 117

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid receptor associated
           protein isoform 1 [Canis familiaris].
          Length = 117

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


>ref|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid receptor associated
           protein isoform 2 [Canis familiaris].
          Length = 98

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/78 (34%), Positives = 48/78 (61%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVN 376
           IR+R+ L A  A F  VN
Sbjct: 64  IRKRIHLRAEDALFFFVN 81


>ref|XP_868465.1| PREDICTED: hypothetical protein XP_863372 [Canis familiaris].
          Length = 131

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/65 (41%), Positives = 38/65 (58%)
 Frame = -3

Query: 436 ILLAFVHLTNRCGHTHHAMSVH*QEEGLVSIELQAPSNYLDELTHVDMIRHQEFRFIQDW 257
           I+L    + +  GH  HA+ VH QEEGL  + L    ++LD+LT  DM+  QE   +Q  
Sbjct: 3   IVLLHTDIGDGRGHAQHAVLVHPQEEGLHGVHLWVALDHLDQLTQADMVWDQECGLVQIG 62

Query: 256 KLLLT 242
           K+LLT
Sbjct: 63  KILLT 67


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,581,628
Number of extensions: 952958
Number of successful extensions: 2507
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 9
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080436.1| microtubule-associated proteins 1A/1B light cha...   236   2e-62
Alignment   gi|NP_080011.1| microtubule-associated proteins 1A/1B light cha...   204   8e-53
Alignment   gi|NP_080969.2| gamma-aminobutyric acid receptor-associated pro...    91   1e-18
Alignment   gi|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-...    90   4e-18
Alignment   gi|NP_065615.1| gamma-aminobutyric acid receptor-associated pro...    77   3e-14
Alignment   gi|NP_062723.1| gamma-aminobutyric acid receptor-associated pro...    75   1e-13

>ref|NP_080436.1| microtubule-associated proteins 1A/1B light chain 3B [Mus
           musculus].
          Length = 125

 Score =  236 bits (602), Expect = 2e-62
 Identities = 118/125 (94%), Positives = 122/125 (97%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRR+FEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESE+DEDGFLYMVYASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120

Query: 485 MKLSV 499
             ++V
Sbjct: 121 TAMAV 125


>ref|NP_080011.1| microtubule-associated proteins 1A/1B light chain 3A [Mus
           musculus].
          Length = 121

 Score =  204 bits (520), Expect = 8e-53
 Identities = 99/120 (82%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRR+F  R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120


>ref|NP_080969.2| gamma-aminobutyric acid receptor-associated protein-like 2 [Mus
           musculus].
          Length = 117

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>ref|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
           2-like [Mus musculus].
          Length = 117

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 44/114 (38%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EK+EDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKEEDGFLYVAYSGENTFG 116


>ref|NP_065615.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Mus
           musculus].
          Length = 117

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|NP_062723.1| gamma-aminobutyric acid receptor-associated protein [Mus musculus].
          Length = 117

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,432,443
Number of extensions: 815863
Number of successful extensions: 2135
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 6
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_073729.1| microtubule-associated proteins 1A/1B light cha...   245   5e-65
Alignment   gi|NP_001078950.1| microtubule-associated proteins 1A/1B light ...   242   5e-64
Alignment   gi|XP_001716847.1| PREDICTED: microtubule-associated proteins 1...   216   4e-56
Alignment   gi|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1...   212   6e-55
Alignment   gi|NP_115903.1| microtubule-associated proteins 1A/1B light cha...   204   9e-53
Alignment   gi|NP_852610.1| microtubule-associated proteins 1A/1B light cha...   185   8e-47
Alignment   gi|NP_001004343.1| microtubule-associated proteins 1A/1B light ...   136   3e-32
Alignment   gi|NP_009216.1| gamma-aminobutyric acid receptor-associated pro...    91   1e-18
Alignment   gi|NP_113600.1| gamma-aminobutyric acid receptor-associated pro...    77   4e-14
Alignment   gi|NP_009209.1| gamma-aminobutyric acid receptor-associated pro...    75   1e-13

>ref|NP_073729.1| microtubule-associated proteins 1A/1B light chain 3B [Homo
           sapiens].
          Length = 125

 Score =  245 bits (626), Expect = 5e-65
 Identities = 124/125 (99%), Positives = 124/125 (99%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMVYASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

Query: 485 MKLSV 499
           MKLSV
Sbjct: 121 MKLSV 125


>ref|NP_001078950.1| microtubule-associated proteins 1A/1B light chain 3 beta 2
           precursor [Homo sapiens].
          Length = 125

 Score =  242 bits (617), Expect = 5e-64
 Identities = 123/125 (98%), Positives = 123/125 (98%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMV ASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120

Query: 485 MKLSV 499
           MKLSV
Sbjct: 121 MKLSV 125


>ref|XP_001716847.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
           3B-like [Homo sapiens].
          Length = 157

 Score =  216 bits (549), Expect = 4e-56
 Identities = 114/135 (84%), Positives = 121/135 (89%), Gaps = 2/135 (1%)
 Frame = +2

Query: 101 RRRPACRDMPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKF 280
           RRR   R  P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKF
Sbjct: 24  RRRLDPRTRPAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKF 82

Query: 281 LVPD--HVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLY 454
           LVPD   VNMSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+ EVYESEKDEDGFLY
Sbjct: 83  LVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLY 142

Query: 455 MVYASQETFGMKLSV 499
           MVYASQET+GMKLSV
Sbjct: 143 MVYASQETYGMKLSV 157


>ref|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1B light chain
           3B-like [Homo sapiens].
          Length = 150

 Score =  212 bits (539), Expect = 6e-55
 Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 2/126 (1%)
 Frame = +2

Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 301
           P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD   VN
Sbjct: 26  PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 84

Query: 302 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETF 481
           MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+ EVYESEKDEDGFLYMVYASQET+
Sbjct: 85  MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 144

Query: 482 GMKLSV 499
           GMKLSV
Sbjct: 145 GMKLSV 150


>ref|NP_115903.1| microtubule-associated proteins 1A/1B light chain 3A isoform a
           [Homo sapiens].
          Length = 121

 Score =  204 bits (520), Expect = 9e-53
 Identities = 99/120 (82%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRR+F  R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120


>ref|NP_852610.1| microtubule-associated proteins 1A/1B light chain 3A isoform b
           [Homo sapiens].
          Length = 125

 Score =  185 bits (469), Expect = 8e-47
 Identities = 90/105 (85%), Positives = 98/105 (93%)
 Frame = +2

Query: 170 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNA 349
           R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL+KIIRRRLQLN 
Sbjct: 20  RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79

Query: 350 NQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
            QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 80  TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124


>ref|NP_001004343.1| microtubule-associated proteins 1A/1B light chain 3C [Homo
           sapiens].
          Length = 147

 Score =  136 bits (343), Expect = 3e-32
 Identities = 67/125 (53%), Positives = 88/125 (70%)
 Frame = +2

Query: 110 PACRDMPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVP 289
           P  + +PS + FKQR++   R E+V  IR + P KIPV++ERY  E  LP LDKTKFLVP
Sbjct: 2   PPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP 61

Query: 290 DHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYAS 469
             + M++ + IIR R+ L A +AF+LLVN  S+VS+S  + E+Y   KDEDGF+YM YAS
Sbjct: 62  QELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYAS 121

Query: 470 QETFG 484
           QETFG
Sbjct: 122 QETFG 126


>ref|NP_009216.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Homo
           sapiens].
          Length = 117

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>ref|NP_113600.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Homo
           sapiens].
          Length = 117

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|NP_009209.1| gamma-aminobutyric acid receptor-associated protein [Homo sapiens].
          Length = 117

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,972,485
Number of extensions: 946203
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177219.1| microtubule-associated proteins 1A/1B light ...   249   2e-66
Alignment   gi|NP_001164298.1| microtubule-associated proteins 1A/1B light ...   204   1e-52
Alignment   gi|XP_003130606.1| PREDICTED: microtubule-associated proteins 1...   132   3e-31
Alignment   gi|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-...    91   9e-19
Alignment   gi|NP_001177216.1| gamma-aminobutyric acid receptor-associated ...    79   6e-15
Alignment   gi|XP_003355775.1| PREDICTED: hypothetical protein LOC100623312...    78   8e-15
Alignment   gi|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-...    77   2e-14
Alignment   gi|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-...    75   9e-14
Alignment   gi|NP_001177217.1| gamma-aminobutyric acid receptor-associated ...    75   9e-14
Alignment   gi|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-...    66   3e-11

>ref|NP_001177219.1| microtubule-associated proteins 1A/1B light chain 3B [Sus scrofa].
          Length = 125

 Score =  249 bits (636), Expect = 2e-66
 Identities = 125/125 (100%), Positives = 125/125 (100%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120

Query: 485 MKLSV 499
           MKLSV
Sbjct: 121 MKLSV 125


>ref|NP_001164298.1| microtubule-associated proteins 1A/1B light chain 3A [Sus scrofa].
          Length = 121

 Score =  204 bits (518), Expect = 1e-52
 Identities = 99/120 (82%), Positives = 110/120 (91%)
 Frame = +2

Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
           MPS++ FKQRR+F  R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1   MPSDRPFKQRRSFADRRKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           SEL+KIIRRRLQLN  QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61  SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120


>ref|XP_003130606.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
           3C-like [Sus scrofa].
          Length = 147

 Score =  132 bits (333), Expect = 3e-31
 Identities = 65/119 (54%), Positives = 85/119 (71%)
 Frame = +2

Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMS 307
           PS + FKQR++   R E+V  IR + P KIPVI+ERY  EK LP+LDKTKFLVP  + M+
Sbjct: 8   PSLRPFKQRKSLATRREEVAGIRMKFPGKIPVIVERYPREKFLPLLDKTKFLVPQELTMT 67

Query: 308 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           + + IIR R+ L A +AF+LLVN  S+ S++  + E+Y   KDEDGF+YM YASQE FG
Sbjct: 68  QFLSIIRSRMVLGATEAFYLLVNNRSLGSMNVTMAEIYRDHKDEDGFVYMTYASQEMFG 126


>ref|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
           2-like [Sus scrofa].
          Length = 117

 Score = 91.3 bits (225), Expect = 9e-19
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           FK+  + E R  +   IR ++P ++PVI+E+  G  Q+  +DK K+LVP  + +++ + I
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+QL + +A FL V+  ++   S  + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>ref|NP_001177216.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Sus
           scrofa].
          Length = 117

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 38/114 (33%), Positives = 70/114 (61%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   ST + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSTTMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|XP_003355775.1| PREDICTED: hypothetical protein LOC100623312 [Sus scrofa].
          Length = 385

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 45/74 (60%), Positives = 45/74 (60%)
 Frame = +1

Query: 1   TRLRAEETQEKXXXXXXXXXXXXXXXGIAGYSASPPPSLPRHAVRENLQTAPNLRTESRR 180
           TRLRAEETQEK               GIAGYSASPPPSLPRHAVRENLQTAPNLR     
Sbjct: 21  TRLRAEETQEKLLSPVSEPPPLPPPLGIAGYSASPPPSLPRHAVRENLQTAPNLRWV--- 77

Query: 181 CPAHPRAASYQNPG 222
               PRA   Q  G
Sbjct: 78  ----PRAGRRQKAG 87


>ref|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
           1-like isoform 1 [Sus scrofa].
          Length = 117

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FLY+ Y+ +  +G
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>ref|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
           [Sus scrofa].
          Length = 117

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


>ref|NP_001177217.1| gamma-aminobutyric acid receptor-associated protein [Sus scrofa].
          Length = 117

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 36/115 (31%), Positives = 69/115 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE+R  +   IR+++P ++PVI+E+   + ++  LDK K+LVP  + + +   +
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
           IR+R+ L A  A F  VN + +   S  + ++Y+   +ED FLY+ Y+ +  +G+
Sbjct: 64  IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


>ref|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
           1-like [Sus scrofa].
          Length = 145

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 62/103 (60%)
 Frame = +2

Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
           +K+   FE R ++   IR+++P ++PVI+E+   + ++P LDK K+LVP  + + +   +
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63

Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFL 451
           IR+R+ L    A F  VN +++   S  + ++YE   +ED FL
Sbjct: 64  IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFL 105


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,379,712
Number of extensions: 588759
Number of successful extensions: 1556
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007576
         (1125 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        1501   0.0  
Sscrofa_Chr03                                                        1366   0.0  
Sscrofa_Chr01                                                         569   e-159
Sscrofa_Chr17                                                          70   3e-09

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 1501 bits (757), Expect = 0.0
 Identities = 791/801 (98%), Gaps = 1/801 (0%)
 Strand = Plus / Minus

                                                                           
Query: 326     agaaggcgcttgcagctcaatgctaaccaagccttcttcctgttagtgaacggacatagc 385
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009093 agaaggcgcttgcagctcaatgctaaccaagccttcttcctgttagtgaacggacatagc 2009034

                                                                           
Query: 386     atggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcgagaaggatgaagatgga 445
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009033 atggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcgagaaggatgaagatgga 2008974

                                                                           
Query: 446     ttcctgtacatggtatatgcctctcaggagactttcggaatgaagttgtctgtgtaagac 505
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008973 ttcctgtacatggtatatgcctctcaggagactttcggaatgaagttgtctgtgtaagac 2008914

                                                                           
Query: 506     tagaaaaatgtatctgtgctagaattttttaaacccttaccaaggaataaaaaagggatg 565
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008913 tagaaaaatgtatctgtgctagaattttttaaacccttaccaaggaataaaaaagggatg 2008854

                                                                           
Query: 566     ttaccaactgagatttatcagctcatctaatcacagatcatccaaacagtagttttcctg 625
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008853 ttaccaactgagatttatcagctcatctaatcacagatcatccaaacagtagttttcctg 2008794

                                                                           
Query: 626     cctaggagtcttaggaagttgtttttgtacttcacgcagaaaaacggagctccggacgag 685
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008793 cctaggagtcttaggaagttgtttttgtacttcacgcagaaaaacggagctccggacgag 2008734

                                                                           
Query: 686     cacattcagctttggaaaactttattacttaacctaggctgttttgttttcacatacaga 745
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008733 cacattcagctttggaaaactttattacttaacctaggctgttttgttttcacatacaga 2008674

                                                                           
Query: 746     agtttaaaaaataaaatactttgcattctaagttgccagtaaaatagattttcaagttat 805
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008673 agtttaaaaaataaaatactttgcattctaagttgccagtaaaatagattttcaagttat 2008614

                                                                           
Query: 806     ttttaatgctcttttcccaaaaggaacttagaatttgagcattcagagggacagttaagt 865
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008613 ttttaatgctcttttcccaaaaggaacttagaatttgagcattcagagggacagttaagt 2008554

                                                                           
Query: 866     cttgtctctaggttcatagaacctgccaactttttatggaagggtttctactcaagtaga 925
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008553 cttgtctctaggttcatagaacctgccaactttttatggaagggtttctactcaagtaga 2008494

                                                                           
Query: 926     gaaatcttaagaggatctttcagcgttaagttgtcaggcatggccacgtccatcccagtg 985
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008493 gaaatcttaagaggatctttcagcgttaagttgtcaggcatggccacgtccatcccagtg 2008434

                                                                           
Query: 986     tatctgccataatagttggaaaaagggtgaattgggggtacacagaaaac-ataaccctg 1044
               ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct: 2008433 tatctgccataatagttggaaaaagggtgaattgggggtacacaggaaactataagcctg 2008374

                                                                           
Query: 1045    aactgctgtgcaggggtcctgatctgctaataagtgaatcccaggtcagcactcatgagg 1104
               | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 2008373 agctgctgtgcagggttcctgatctgctaataagtgtattccaggtcagcactcatgagg 2008314

                                    
Query: 1105    aaggtcccatttgggtacttc 1125
               ||| || ||||||| ||||||
Sbjct: 2008313 aagttctcatttggttacttc 2008293



 Score =  325 bits (164), Expect = 3e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1       acgcggctacgggctgaggagacacaagagaagctgctgtcgccagtgtcggagccgcca 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029003 acgcggctacgggctgaggagacacaagagaagctgctgtcgccagtgtcggagccgcca 2028944

                                                                           
Query: 61      ccgctgccaccgcctcttggaatcgcaggatactccgcttcgccgccgcccagcctgccg 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028943 ccgctgccaccgcctcttggaatcgcaggatactccgcttcgccgccgcccagcctgccg 2028884

                                                           
Query: 121     cgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcg 164
               ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028883 cgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcg 2028840



 Score =  214 bits (108), Expect = 8e-53
 Identities = 108/108 (100%)
 Strand = Plus / Minus

                                                                           
Query: 220     ggtaataatagaacgatacaaaggtgagaagcagcttccagtcctggataaaacgaaatt 279
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010354 ggtaataatagaacgatacaaaggtgagaagcagcttccagtcctggataaaacgaaatt 2010295

                                                               
Query: 280     cctggtgcctgatcatgtcaacatgagtgagctcatcaagataattag 327
               ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010294 cctggtgcctgatcatgtcaacatgagtgagctcatcaagataattag 2010247



 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                           
Query: 164     gaacagagagtagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggta 223
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013915 gaacagagagtagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggta 2013856


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 1366 bits (689), Expect = 0.0
 Identities = 934/1015 (92%), Gaps = 28/1015 (2%)
 Strand = Plus / Minus

                                                                            
Query: 114      cctgccgcgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcgaacagagag 173
                ||||| ||||| ||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 97644229 cctgctgcgacttgccgtcggagaaaaccttcaaacagtgctgaaccttcgaacagagag 97644170

                                                                            
Query: 174      tagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggtaataatagaac 233
                |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 97644169 tagaagatgtccggcttatccgagagcagcattctaccaaaatcccagtaataacagaac 97644110

                                                                            
Query: 234      gatacaaaggtgagaagcagcttccagtcctggataaaacgaaattcctggtgcctgatc 293
                ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 97644109 gattcaaaggtgagaagcagcttccggtcctggataaaacaaaattcctggtgcctgatc 97644050

                                                                            
Query: 294      atgtcaacatgagtgagctcatcaagataattagaaggcgcttgcagctcaatgctaacc 353
                ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 97644049 atgtcaagatgagtgagctcatcaagataattagaag-cgcttacagctcaatgctaacc 97643991

                                                                            
Query: 354      aagccttcttcctgttagtgaacggacatagcatggtgagtgtgtccacaccgatttgtg 413
                ||||||||||||||||||||||||||||| ||||||                      ||
Sbjct: 97643990 aagccttcttcctgttagtgaacggacatggcatgg----------------------tg 97643953

                                                                            
Query: 414      aggtgtacgaaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcagg 473
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97643952 aggtgtaccaaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcagg 97643893

                                                                            
Query: 474      agactttcggaatgaagttgtctgtgtaagactagaaaaatgtatctgtgctagaatttt 533
                ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 97643892 agacttttggaatgaaattgtccgtgtaagactagaaaaatgtatctgtgctagaatttt 97643833

                                                                            
Query: 534      ttaaacccttaccaaggaataaaaaagggatgttaccaactgagatttatcagctcatct 593
                ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 97643832 ttaaacctttaccaaggaataaaaaaggggtgttaccaactgagatttatcagctcatct 97643773

                                                                            
Query: 594      aatcacagatcatccaaacagtagttttcctgcctaggagtcttaggaagttgtttttgt 653
                |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||
Sbjct: 97643772 aatcacagatcatccaaacagtagttttcctctctaggagttttaggaagttgttttcgt 97643713

                                                                            
Query: 654      acttcacgcagaaaaacggagctccggacgagcacattcagctttggaaaactttattac 713
                |||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 97643712 actttacgcagaaaaaaggagctccgaatgagcacattcagctttggaaaactttattac 97643653

                                                                            
Query: 714      ttaacctaggctgttttgttttcacatacagaagtttaaaaaataaaatactttgcattc 773
                |||||||||||||||||||||| ||||| | ||||||  |||||||||||||||||||||
Sbjct: 97643652 ttaacctaggctgttttgtttttacatatataagttt-caaaataaaatactttgcattc 97643594

                                                                            
Query: 774      taagttgccagtaaaatagattttcaagttatttttaatgctcttttcccaaaaggaact 833
                |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 97643593 taagttgccaataaaatagatcttcaagttatttttaatgctcttttcccaaaaggaact 97643534

                                                                            
Query: 834      tagaatttgagcattcagagggacagttaagtcttgtctctaggttcatagaacctgcca 893
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 97643533 tagaatttgagcattcagagggacagttaagtcttgtctctaggttcatagaacctgcta 97643474

                                                                            
Query: 894      actttttatggaagggtttctactcaagtagagaa--atcttaagaggatctttcagcgt 951
                |||||||| ||||||||||||||||||||||| ||   |||||||||||||||| |||  
Sbjct: 97643473 actttttacggaagggtttctactcaagtagaaaatcttcttaagaggatctttaagc-a 97643415

                                                                            
Query: 952      taagttgtcaggcatggccacgtccatcccagtgtatctgccataatagttggaaaaagg 1011
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97643414 taagttgtcaggcatggccacgtccatcccagtgtatttgccataatagttggaaaaagg 97643355

                                                                            
Query: 1012     gtgaattgggggtacaca-gaaaacataaccctgaactgctgtgcaggggtcctgatctg 1070
                |||||||||||||||||| ||||  |||| ||||||||||||| ||||| ||||||||||
Sbjct: 97643354 gtgaattgggggtacacaggaaattataagcctgaactgctgtccagggttcctgatctg 97643295

                                                                       
Query: 1071     ctaataagtgaatcccaggtcagcactcatgaggaaggtcccatttgggtacttc 1125
                |||||||||| || ||||||||||||||||||||||| || ||||| | ||||||
Sbjct: 97643294 ctaataagtgtattccaggtcagcactcatgaggaagttctcattttgttacttc 97643240


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  569 bits (287), Expect = e-159
 Identities = 668/792 (84%), Gaps = 26/792 (3%)
 Strand = Plus / Minus

                                                                             
Query: 137       aaaaccttcaaacagcgccgaaccttcgaacagagagtagaagatgtccggctcatccga 196
                 |||||||||||||| || | | |||| ||||| ||||||||||||||||  || |||| |
Sbjct: 209761708 aaaaccttcaaacaacgtccagcctttgaacaaagagtagaagatgtcctccttatccaa 209761649

                                                                             
Query: 197       gagcagcatcctaccaaaatcccggtaataatagaacgatacaaaggtgagaagcagctt 256
                 ||||||||||||||||||||||  |||||| |||||| ||||||||||||||||| ||||
Sbjct: 209761648 gagcagcatcctaccaaaatcctagtaatagtagaactatacaaaggtgagaagctgctt 209761589

                                                                             
Query: 257       ccagtcctggataaaacgaaattcctggtgcctgatcatgtcaacatgagtgagctcatc 316
                 | |||||||||||||||  | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 209761588 ctagtcctggataaaacagagttcctggtgcctgatcatgtcaacatgagtgagatcatc 209761529

                                                                             
Query: 317       aagataattagaaggcgcttgcagctcaa--------tgctaaccaagccttcttcctgt 368
                 | |||||||||||||| |||  |||||||         ||||| |||||||||||||  |
Sbjct: 209761528 aggataattagaaggc-cttatagctcaacactaatcagctaatcaagccttcttccctt 209761470

                                                                             
Query: 369       tagtgaacggacatagcatggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcg 428
                 ||||||| ||||| ||||||||||||||||||||||  |||||||| ||||| || || |
Sbjct: 209761469 tagtgaatggacagagcatggtgagtgtgtccacacttatttgtgaagtgtatgacagtg 209761410

                                                                             
Query: 429       agaaggatgaagatggattcctgtacatggtatatgcctctcaggagactttcggaatga 488
                 | |||| ||||||||||||||| ||  |||| ||||||||||||||||||||| ||||||
Sbjct: 209761409 aaaaggctgaagatggattcctatatgtggtgtatgcctctcaggagactttcagaatga 209761350

                                                                             
Query: 489       agttgtctgtgtaagactagaaaaatgtatctgtgctagaattttttaaacccttaccaa 548
                 | ||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||||
Sbjct: 209761349 aattgtctgtgtaagactagaaaaatgcatctgttctagaa--ttttaaacccttaccaa 209761292

                                                                             
Query: 549       ggaataaaaaagggatgttaccaactgagatttatcagctcatctaatcacagatcatcc 608
                             ||||||||||||||||  || || || ||||||||||||| |||||| 
Sbjct: 209761291 ------------ggatgttaccaactgaagttgattagttcatctaatcacaaatcatca 209761244

                                                                             
Query: 609       aaacagtagttttcctgcctaggagtcttaggaagttgtttttgtacttcacgcagaaaa 668
                  || |||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 209761243 gaagagtaatgttcctgcctaggagttttagaaagttgtttttgtacttcacgcagaaaa 209761184

                                                                             
Query: 669       acggagctccggacgagcacattcagctttggaaaactttattacttaacctaggctgtt 728
                 || |||||||  | |||| ||||||||||| |||||||||| || ||||||||| |||| 
Sbjct: 209761183 actgagctccaaaggagcccattcagctttagaaaactttaatatttaacctagcctgtc 209761124

                                                                             
Query: 729       ttgttttcacatacagaagtttaaaaaataaaatactttgcattctaagttgccagtaaa 788
                 ||||||||| ||  |||||||| |||||||||||||||||||||||||| ||||| | ||
Sbjct: 209761123 ttgttttcaaatttagaagttt-aaaaataaaatactttgcattctaagctgccaatgaa 209761065

                                                                             
Query: 789       atagattttcaagttatttttaatgctcttttcccaaaaggaacttagaatttgagcatt 848
                 |||||   | ||| || |||||||   || | ||||||||||||||  ||||||||||||
Sbjct: 209761064 atagaccctgaaggta-ttttaatatcctctccccaaaaggaacttgcaatttgagcatt 209761006

                                                                             
Query: 849       cagagggacagttaagtcttgtctctaggttcatagaacctgccaactttttatggaagg 908
                 || |  |||| ||||||||| |||   |||||||| | ||||||||||||||| |||| |
Sbjct: 209761005 caaaaagacatttaagtcttctcttgcggttcataaatcctgccaacttttta-ggaaag 209760947

                             
Query: 909       gtttctactcaa 920
                  |||||||||||
Sbjct: 209760946 atttctactcaa 209760935



 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                             
Query: 423       aaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcaggagactttcg 482
                 |||| ||||||||||||||||||||||||||  |||||| || | |||||||||| || |
Sbjct: 114863704 aaagtgagaaggatgaagatggattcctgtaattggtatttgacactcaggagacatttg 114863645

                                     
Query: 483       gaatgaagttgtctgtgtaa 502
                 ||||||| ||| | ||||||
Sbjct: 114863644 gaatgaaattgccagtgtaa 114863625


>Sscrofa_Chr17 
||          Length = 69701581

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 236      tacaaaggtgagaagcagcttccagtcctggataaaacgaaattcctggtgcctgatcat 295
                ||||| |||||||||||||| ||||||||||| || || || |||||||| || || |||
Sbjct: 43156519 tacaagggtgagaagcagctgccagtcctggacaagaccaagttcctggtcccagaccat 43156578

                           
Query: 296      gtcaacatgag 306
                |||||||||||
Sbjct: 43156579 gtcaacatgag 43156589


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,652,198
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 12
Length of query: 1125
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1104
Effective length of database: 2,808,413,156
Effective search space: 3100488124224
Effective search space used: 3100488124224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)