Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001169.1| microtubule-associated proteins 1A/1B light ... 249 3e-66
Alignment gi|NP_001039640.1| microtubule-associated proteins 1A/1B light ... 206 4e-53
Alignment gi|NP_001094528.1| microtubule-associated proteins 1A/1B light ... 129 4e-30
Alignment gi|NP_777100.1| gamma-aminobutyric acid receptor-associated pro... 91 1e-18
Alignment gi|NP_001028788.1| gamma-aminobutyric acid receptor-associated ... 77 4e-14
Alignment gi|NP_001029220.1| gamma-aminobutyric acid receptor-associated ... 75 1e-13
>ref|NP_001001169.1| microtubule-associated proteins 1A/1B light chain 3B [Bos taurus].
Length = 125
Score = 249 bits (636), Expect = 3e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
Query: 485 MKLSV 499
MKLSV
Sbjct: 121 MKLSV 125
>ref|NP_001039640.1| microtubule-associated proteins 1A/1B light chain 3A [Bos taurus].
Length = 121
Score = 206 bits (523), Expect = 4e-53
Identities = 100/120 (83%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRR+F R ++V+ IREQHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_001094528.1| microtubule-associated proteins 1A/1B light chain 3C [Bos taurus].
Length = 148
Score = 129 bits (325), Expect = 4e-30
Identities = 64/119 (53%), Positives = 84/119 (70%)
Frame = +2
Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMS 307
PS + FKQR++ R E+V IR + P KIPVI+ERY EK LP LDKTKFLVP + M+
Sbjct: 8 PSLRPFKQRKSLATRREEVAGIRVKFPGKIPVIVERYPREKFLPRLDKTKFLVPQELTMT 67
Query: 308 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
+ + +IR R+ L A +AF+LLVN S+ S++ + E+Y KDEDGF+YM YASQE FG
Sbjct: 68 QFLSVIRSRMVLGATEAFYLLVNNKSLGSMNVTMAEIYRDYKDEDGFVYMTYASQEMFG 126
>ref|NP_777100.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Bos
taurus].
Length = 117
Score = 91.3 bits (225), Expect = 1e-18
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_001028788.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Bos
taurus].
Length = 117
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/114 (32%), Positives = 69/114 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|NP_001029220.1| gamma-aminobutyric acid receptor-associated protein [Bos taurus].
Length = 117
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,978,002
Number of extensions: 926307
Number of successful extensions: 2304
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 6
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536756.2| PREDICTED: similar to microtubule-associated pr... 243 2e-64
Alignment gi|XP_863854.1| PREDICTED: similar to microtubule-associated pr... 205 7e-53
Alignment gi|XP_534391.2| PREDICTED: similar to microtubule-associated pr... 205 7e-53
Alignment gi|XP_854448.1| PREDICTED: similar to microtubule-associated pr... 134 2e-31
Alignment gi|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associat... 91 2e-18
Alignment gi|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (... 77 4e-14
Alignment gi|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid r... 75 1e-13
Alignment gi|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid r... 57 3e-08
Alignment gi|XP_868465.1| PREDICTED: hypothetical protein XP_863372 [Cani... 52 1e-06
>ref|XP_536756.2| PREDICTED: similar to microtubule-associated proteins 1A/1B light
chain 3 [Canis familiaris].
Length = 125
Score = 243 bits (620), Expect = 2e-64
Identities = 123/125 (98%), Positives = 123/125 (98%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
Query: 485 MKLSV 499
MKL V
Sbjct: 121 MKLFV 125
>ref|XP_863854.1| PREDICTED: similar to microtubule-associated protein 1 light chain
3 alpha isoform 2 [Canis familiaris].
Length = 121
Score = 205 bits (521), Expect = 7e-53
Identities = 99/120 (82%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRRTF R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKD+DGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120
>ref|XP_534391.2| PREDICTED: similar to microtubule-associated protein 1 light chain
3 alpha isoform 1 [Canis familiaris].
Length = 121
Score = 205 bits (521), Expect = 7e-53
Identities = 99/120 (82%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRRTF R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKD+DGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120
>ref|XP_854448.1| PREDICTED: similar to microtubule-associated protein 1 light chain
3 gamma [Canis familiaris].
Length = 169
Score = 134 bits (337), Expect = 2e-31
Identities = 68/118 (57%), Positives = 84/118 (71%)
Frame = +2
Query: 131 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 310
S + FKQR++ R E+V IR + P KIPVI+ERY EK LP+LDKTKFLVP + M +
Sbjct: 9 SLRPFKQRKSLATRQEEVAGIRAKFPNKIPVIVERYPREKFLPLLDKTKFLVPQELTMIQ 68
Query: 311 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
+ IIR RL L A +AF+LLVN S+VS+S + EVY KDEDGF+YM YASQE FG
Sbjct: 69 FLSIIRSRLVLGATEAFYLLVNNRSLVSMSMTMAEVYRDYKDEDGFVYMTYASQEMFG 126
>ref|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associated protein like 2
[Canis familiaris].
Length = 117
Score = 91.3 bits (225), Expect = 2e-18
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (GABA(A))
receptor-associated protein-like 1 isoform 1 [Canis
familiaris].
Length = 117
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/114 (32%), Positives = 69/114 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid receptor associated
protein isoform 1 [Canis familiaris].
Length = 117
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>ref|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid receptor associated
protein isoform 2 [Canis familiaris].
Length = 98
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/78 (34%), Positives = 48/78 (61%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVN 376
IR+R+ L A A F VN
Sbjct: 64 IRKRIHLRAEDALFFFVN 81
>ref|XP_868465.1| PREDICTED: hypothetical protein XP_863372 [Canis familiaris].
Length = 131
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = -3
Query: 436 ILLAFVHLTNRCGHTHHAMSVH*QEEGLVSIELQAPSNYLDELTHVDMIRHQEFRFIQDW 257
I+L + + GH HA+ VH QEEGL + L ++LD+LT DM+ QE +Q
Sbjct: 3 IVLLHTDIGDGRGHAQHAVLVHPQEEGLHGVHLWVALDHLDQLTQADMVWDQECGLVQIG 62
Query: 256 KLLLT 242
K+LLT
Sbjct: 63 KILLT 67
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,581,628
Number of extensions: 952958
Number of successful extensions: 2507
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 9
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080436.1| microtubule-associated proteins 1A/1B light cha... 236 2e-62
Alignment gi|NP_080011.1| microtubule-associated proteins 1A/1B light cha... 204 8e-53
Alignment gi|NP_080969.2| gamma-aminobutyric acid receptor-associated pro... 91 1e-18
Alignment gi|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-... 90 4e-18
Alignment gi|NP_065615.1| gamma-aminobutyric acid receptor-associated pro... 77 3e-14
Alignment gi|NP_062723.1| gamma-aminobutyric acid receptor-associated pro... 75 1e-13
>ref|NP_080436.1| microtubule-associated proteins 1A/1B light chain 3B [Mus
musculus].
Length = 125
Score = 236 bits (602), Expect = 2e-62
Identities = 118/125 (94%), Positives = 122/125 (97%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRR+FEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESE+DEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
Query: 485 MKLSV 499
++V
Sbjct: 121 TAMAV 125
>ref|NP_080011.1| microtubule-associated proteins 1A/1B light chain 3A [Mus
musculus].
Length = 121
Score = 204 bits (520), Expect = 8e-53
Identities = 99/120 (82%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_080969.2| gamma-aminobutyric acid receptor-associated protein-like 2 [Mus
musculus].
Length = 117
Score = 91.3 bits (225), Expect = 1e-18
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
2-like [Mus musculus].
Length = 117
Score = 89.7 bits (221), Expect = 4e-18
Identities = 44/114 (38%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EK+EDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKEEDGFLYVAYSGENTFG 116
>ref|NP_065615.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Mus
musculus].
Length = 117
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/114 (32%), Positives = 69/114 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|NP_062723.1| gamma-aminobutyric acid receptor-associated protein [Mus musculus].
Length = 117
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,432,443
Number of extensions: 815863
Number of successful extensions: 2135
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 6
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_073729.1| microtubule-associated proteins 1A/1B light cha... 245 5e-65
Alignment gi|NP_001078950.1| microtubule-associated proteins 1A/1B light ... 242 5e-64
Alignment gi|XP_001716847.1| PREDICTED: microtubule-associated proteins 1... 216 4e-56
Alignment gi|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1... 212 6e-55
Alignment gi|NP_115903.1| microtubule-associated proteins 1A/1B light cha... 204 9e-53
Alignment gi|NP_852610.1| microtubule-associated proteins 1A/1B light cha... 185 8e-47
Alignment gi|NP_001004343.1| microtubule-associated proteins 1A/1B light ... 136 3e-32
Alignment gi|NP_009216.1| gamma-aminobutyric acid receptor-associated pro... 91 1e-18
Alignment gi|NP_113600.1| gamma-aminobutyric acid receptor-associated pro... 77 4e-14
Alignment gi|NP_009209.1| gamma-aminobutyric acid receptor-associated pro... 75 1e-13
>ref|NP_073729.1| microtubule-associated proteins 1A/1B light chain 3B [Homo
sapiens].
Length = 125
Score = 245 bits (626), Expect = 5e-65
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
Query: 485 MKLSV 499
MKLSV
Sbjct: 121 MKLSV 125
>ref|NP_001078950.1| microtubule-associated proteins 1A/1B light chain 3 beta 2
precursor [Homo sapiens].
Length = 125
Score = 242 bits (617), Expect = 5e-64
Identities = 123/125 (98%), Positives = 123/125 (98%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI EVYESEKDEDGFLYMV ASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
Query: 485 MKLSV 499
MKLSV
Sbjct: 121 MKLSV 125
>ref|XP_001716847.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
3B-like [Homo sapiens].
Length = 157
Score = 216 bits (549), Expect = 4e-56
Identities = 114/135 (84%), Positives = 121/135 (89%), Gaps = 2/135 (1%)
Frame = +2
Query: 101 RRRPACRDMPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKF 280
RRR R P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKF
Sbjct: 24 RRRLDPRTRPAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKF 82
Query: 281 LVPD--HVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLY 454
LVPD VNMSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+ EVYESEKDEDGFLY
Sbjct: 83 LVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLY 142
Query: 455 MVYASQETFGMKLSV 499
MVYASQET+GMKLSV
Sbjct: 143 MVYASQETYGMKLSV 157
>ref|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1B light chain
3B-like [Homo sapiens].
Length = 150
Score = 212 bits (539), Expect = 6e-55
Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 2/126 (1%)
Frame = +2
Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 301
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 26 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 84
Query: 302 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETF 481
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+ EVYESEKDEDGFLYMVYASQET+
Sbjct: 85 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 144
Query: 482 GMKLSV 499
GMKLSV
Sbjct: 145 GMKLSV 150
>ref|NP_115903.1| microtubule-associated proteins 1A/1B light chain 3A isoform a
[Homo sapiens].
Length = 121
Score = 204 bits (520), Expect = 9e-53
Identities = 99/120 (82%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_852610.1| microtubule-associated proteins 1A/1B light chain 3A isoform b
[Homo sapiens].
Length = 125
Score = 185 bits (469), Expect = 8e-47
Identities = 90/105 (85%), Positives = 98/105 (93%)
Frame = +2
Query: 170 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNA 349
R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL+KIIRRRLQLN
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 350 NQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>ref|NP_001004343.1| microtubule-associated proteins 1A/1B light chain 3C [Homo
sapiens].
Length = 147
Score = 136 bits (343), Expect = 3e-32
Identities = 67/125 (53%), Positives = 88/125 (70%)
Frame = +2
Query: 110 PACRDMPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVP 289
P + +PS + FKQR++ R E+V IR + P KIPV++ERY E LP LDKTKFLVP
Sbjct: 2 PPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP 61
Query: 290 DHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYAS 469
+ M++ + IIR R+ L A +AF+LLVN S+VS+S + E+Y KDEDGF+YM YAS
Sbjct: 62 QELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYAS 121
Query: 470 QETFG 484
QETFG
Sbjct: 122 QETFG 126
>ref|NP_009216.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Homo
sapiens].
Length = 117
Score = 91.3 bits (225), Expect = 1e-18
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_113600.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Homo
sapiens].
Length = 117
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/114 (32%), Positives = 69/114 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|NP_009209.1| gamma-aminobutyric acid receptor-associated protein [Homo sapiens].
Length = 117
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,972,485
Number of extensions: 946203
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177219.1| microtubule-associated proteins 1A/1B light ... 249 2e-66
Alignment gi|NP_001164298.1| microtubule-associated proteins 1A/1B light ... 204 1e-52
Alignment gi|XP_003130606.1| PREDICTED: microtubule-associated proteins 1... 132 3e-31
Alignment gi|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-... 91 9e-19
Alignment gi|NP_001177216.1| gamma-aminobutyric acid receptor-associated ... 79 6e-15
Alignment gi|XP_003355775.1| PREDICTED: hypothetical protein LOC100623312... 78 8e-15
Alignment gi|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-... 77 2e-14
Alignment gi|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-... 75 9e-14
Alignment gi|NP_001177217.1| gamma-aminobutyric acid receptor-associated ... 75 9e-14
Alignment gi|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-... 66 3e-11
>ref|NP_001177219.1| microtubule-associated proteins 1A/1B light chain 3B [Sus scrofa].
Length = 125
Score = 249 bits (636), Expect = 2e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
Query: 485 MKLSV 499
MKLSV
Sbjct: 121 MKLSV 125
>ref|NP_001164298.1| microtubule-associated proteins 1A/1B light chain 3A [Sus scrofa].
Length = 121
Score = 204 bits (518), Expect = 1e-52
Identities = 99/120 (82%), Positives = 110/120 (91%)
Frame = +2
Query: 125 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 304
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRRKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 305 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI ++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|XP_003130606.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
3C-like [Sus scrofa].
Length = 147
Score = 132 bits (333), Expect = 3e-31
Identities = 65/119 (54%), Positives = 85/119 (71%)
Frame = +2
Query: 128 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMS 307
PS + FKQR++ R E+V IR + P KIPVI+ERY EK LP+LDKTKFLVP + M+
Sbjct: 8 PSLRPFKQRKSLATRREEVAGIRMKFPGKIPVIVERYPREKFLPLLDKTKFLVPQELTMT 67
Query: 308 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
+ + IIR R+ L A +AF+LLVN S+ S++ + E+Y KDEDGF+YM YASQE FG
Sbjct: 68 QFLSIIRSRMVLGATEAFYLLVNNRSLGSMNVTMAEIYRDHKDEDGFVYMTYASQEMFG 126
>ref|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
2-like [Sus scrofa].
Length = 117
Score = 91.3 bits (225), Expect = 9e-19
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_001177216.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Sus
scrofa].
Length = 117
Score = 78.6 bits (192), Expect = 6e-15
Identities = 38/114 (33%), Positives = 70/114 (61%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ ST + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSTTMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|XP_003355775.1| PREDICTED: hypothetical protein LOC100623312 [Sus scrofa].
Length = 385
Score = 78.2 bits (191), Expect = 8e-15
Identities = 45/74 (60%), Positives = 45/74 (60%)
Frame = +1
Query: 1 TRLRAEETQEKXXXXXXXXXXXXXXXGIAGYSASPPPSLPRHAVRENLQTAPNLRTESRR 180
TRLRAEETQEK GIAGYSASPPPSLPRHAVRENLQTAPNLR
Sbjct: 21 TRLRAEETQEKLLSPVSEPPPLPPPLGIAGYSASPPPSLPRHAVRENLQTAPNLRWV--- 77
Query: 181 CPAHPRAASYQNPG 222
PRA Q G
Sbjct: 78 ----PRAGRRQKAG 87
>ref|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
1-like isoform 1 [Sus scrofa].
Length = 117
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/114 (32%), Positives = 69/114 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 484
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>ref|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
[Sus scrofa].
Length = 117
Score = 74.7 bits (182), Expect = 9e-14
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>ref|NP_001177217.1| gamma-aminobutyric acid receptor-associated protein [Sus scrofa].
Length = 117
Score = 74.7 bits (182), Expect = 9e-14
Identities = 36/115 (31%), Positives = 69/115 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGM 487
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>ref|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
1-like [Sus scrofa].
Length = 145
Score = 66.2 bits (160), Expect = 3e-11
Identities = 34/103 (33%), Positives = 62/103 (60%)
Frame = +2
Query: 143 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 322
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 323 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFL 451
IR+R+ L A F VN +++ S + ++YE +ED FL
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFL 105
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,379,712
Number of extensions: 588759
Number of successful extensions: 1556
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007576
(1125 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1501 0.0
Sscrofa_Chr03 1366 0.0
Sscrofa_Chr01 569 e-159
Sscrofa_Chr17 70 3e-09
>Sscrofa_Chr06
|| Length = 157765593
Score = 1501 bits (757), Expect = 0.0
Identities = 791/801 (98%), Gaps = 1/801 (0%)
Strand = Plus / Minus
Query: 326 agaaggcgcttgcagctcaatgctaaccaagccttcttcctgttagtgaacggacatagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009093 agaaggcgcttgcagctcaatgctaaccaagccttcttcctgttagtgaacggacatagc 2009034
Query: 386 atggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcgagaaggatgaagatgga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009033 atggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcgagaaggatgaagatgga 2008974
Query: 446 ttcctgtacatggtatatgcctctcaggagactttcggaatgaagttgtctgtgtaagac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008973 ttcctgtacatggtatatgcctctcaggagactttcggaatgaagttgtctgtgtaagac 2008914
Query: 506 tagaaaaatgtatctgtgctagaattttttaaacccttaccaaggaataaaaaagggatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008913 tagaaaaatgtatctgtgctagaattttttaaacccttaccaaggaataaaaaagggatg 2008854
Query: 566 ttaccaactgagatttatcagctcatctaatcacagatcatccaaacagtagttttcctg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008853 ttaccaactgagatttatcagctcatctaatcacagatcatccaaacagtagttttcctg 2008794
Query: 626 cctaggagtcttaggaagttgtttttgtacttcacgcagaaaaacggagctccggacgag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008793 cctaggagtcttaggaagttgtttttgtacttcacgcagaaaaacggagctccggacgag 2008734
Query: 686 cacattcagctttggaaaactttattacttaacctaggctgttttgttttcacatacaga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008733 cacattcagctttggaaaactttattacttaacctaggctgttttgttttcacatacaga 2008674
Query: 746 agtttaaaaaataaaatactttgcattctaagttgccagtaaaatagattttcaagttat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008673 agtttaaaaaataaaatactttgcattctaagttgccagtaaaatagattttcaagttat 2008614
Query: 806 ttttaatgctcttttcccaaaaggaacttagaatttgagcattcagagggacagttaagt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008613 ttttaatgctcttttcccaaaaggaacttagaatttgagcattcagagggacagttaagt 2008554
Query: 866 cttgtctctaggttcatagaacctgccaactttttatggaagggtttctactcaagtaga 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008553 cttgtctctaggttcatagaacctgccaactttttatggaagggtttctactcaagtaga 2008494
Query: 926 gaaatcttaagaggatctttcagcgttaagttgtcaggcatggccacgtccatcccagtg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008493 gaaatcttaagaggatctttcagcgttaagttgtcaggcatggccacgtccatcccagtg 2008434
Query: 986 tatctgccataatagttggaaaaagggtgaattgggggtacacagaaaac-ataaccctg 1044
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct: 2008433 tatctgccataatagttggaaaaagggtgaattgggggtacacaggaaactataagcctg 2008374
Query: 1045 aactgctgtgcaggggtcctgatctgctaataagtgaatcccaggtcagcactcatgagg 1104
| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 2008373 agctgctgtgcagggttcctgatctgctaataagtgtattccaggtcagcactcatgagg 2008314
Query: 1105 aaggtcccatttgggtacttc 1125
||| || ||||||| ||||||
Sbjct: 2008313 aagttctcatttggttacttc 2008293
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1 acgcggctacgggctgaggagacacaagagaagctgctgtcgccagtgtcggagccgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029003 acgcggctacgggctgaggagacacaagagaagctgctgtcgccagtgtcggagccgcca 2028944
Query: 61 ccgctgccaccgcctcttggaatcgcaggatactccgcttcgccgccgcccagcctgccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028943 ccgctgccaccgcctcttggaatcgcaggatactccgcttcgccgccgcccagcctgccg 2028884
Query: 121 cgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcg 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028883 cgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcg 2028840
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 220 ggtaataatagaacgatacaaaggtgagaagcagcttccagtcctggataaaacgaaatt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010354 ggtaataatagaacgatacaaaggtgagaagcagcttccagtcctggataaaacgaaatt 2010295
Query: 280 cctggtgcctgatcatgtcaacatgagtgagctcatcaagataattag 327
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010294 cctggtgcctgatcatgtcaacatgagtgagctcatcaagataattag 2010247
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 164 gaacagagagtagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013915 gaacagagagtagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggta 2013856
>Sscrofa_Chr03
|| Length = 144787322
Score = 1366 bits (689), Expect = 0.0
Identities = 934/1015 (92%), Gaps = 28/1015 (2%)
Strand = Plus / Minus
Query: 114 cctgccgcgacatgccgtccgagaaaaccttcaaacagcgccgaaccttcgaacagagag 173
||||| ||||| ||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 97644229 cctgctgcgacttgccgtcggagaaaaccttcaaacagtgctgaaccttcgaacagagag 97644170
Query: 174 tagaagatgtccggctcatccgagagcagcatcctaccaaaatcccggtaataatagaac 233
|||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 97644169 tagaagatgtccggcttatccgagagcagcattctaccaaaatcccagtaataacagaac 97644110
Query: 234 gatacaaaggtgagaagcagcttccagtcctggataaaacgaaattcctggtgcctgatc 293
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 97644109 gattcaaaggtgagaagcagcttccggtcctggataaaacaaaattcctggtgcctgatc 97644050
Query: 294 atgtcaacatgagtgagctcatcaagataattagaaggcgcttgcagctcaatgctaacc 353
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 97644049 atgtcaagatgagtgagctcatcaagataattagaag-cgcttacagctcaatgctaacc 97643991
Query: 354 aagccttcttcctgttagtgaacggacatagcatggtgagtgtgtccacaccgatttgtg 413
||||||||||||||||||||||||||||| |||||| ||
Sbjct: 97643990 aagccttcttcctgttagtgaacggacatggcatgg----------------------tg 97643953
Query: 414 aggtgtacgaaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcagg 473
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97643952 aggtgtaccaaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcagg 97643893
Query: 474 agactttcggaatgaagttgtctgtgtaagactagaaaaatgtatctgtgctagaatttt 533
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 97643892 agacttttggaatgaaattgtccgtgtaagactagaaaaatgtatctgtgctagaatttt 97643833
Query: 534 ttaaacccttaccaaggaataaaaaagggatgttaccaactgagatttatcagctcatct 593
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 97643832 ttaaacctttaccaaggaataaaaaaggggtgttaccaactgagatttatcagctcatct 97643773
Query: 594 aatcacagatcatccaaacagtagttttcctgcctaggagtcttaggaagttgtttttgt 653
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 97643772 aatcacagatcatccaaacagtagttttcctctctaggagttttaggaagttgttttcgt 97643713
Query: 654 acttcacgcagaaaaacggagctccggacgagcacattcagctttggaaaactttattac 713
|||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 97643712 actttacgcagaaaaaaggagctccgaatgagcacattcagctttggaaaactttattac 97643653
Query: 714 ttaacctaggctgttttgttttcacatacagaagtttaaaaaataaaatactttgcattc 773
|||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||
Sbjct: 97643652 ttaacctaggctgttttgtttttacatatataagttt-caaaataaaatactttgcattc 97643594
Query: 774 taagttgccagtaaaatagattttcaagttatttttaatgctcttttcccaaaaggaact 833
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 97643593 taagttgccaataaaatagatcttcaagttatttttaatgctcttttcccaaaaggaact 97643534
Query: 834 tagaatttgagcattcagagggacagttaagtcttgtctctaggttcatagaacctgcca 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 97643533 tagaatttgagcattcagagggacagttaagtcttgtctctaggttcatagaacctgcta 97643474
Query: 894 actttttatggaagggtttctactcaagtagagaa--atcttaagaggatctttcagcgt 951
|||||||| ||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 97643473 actttttacggaagggtttctactcaagtagaaaatcttcttaagaggatctttaagc-a 97643415
Query: 952 taagttgtcaggcatggccacgtccatcccagtgtatctgccataatagttggaaaaagg 1011
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97643414 taagttgtcaggcatggccacgtccatcccagtgtatttgccataatagttggaaaaagg 97643355
Query: 1012 gtgaattgggggtacaca-gaaaacataaccctgaactgctgtgcaggggtcctgatctg 1070
|||||||||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||
Sbjct: 97643354 gtgaattgggggtacacaggaaattataagcctgaactgctgtccagggttcctgatctg 97643295
Query: 1071 ctaataagtgaatcccaggtcagcactcatgaggaaggtcccatttgggtacttc 1125
|||||||||| || ||||||||||||||||||||||| || ||||| | ||||||
Sbjct: 97643294 ctaataagtgtattccaggtcagcactcatgaggaagttctcattttgttacttc 97643240
>Sscrofa_Chr01
|| Length = 315321322
Score = 569 bits (287), Expect = e-159
Identities = 668/792 (84%), Gaps = 26/792 (3%)
Strand = Plus / Minus
Query: 137 aaaaccttcaaacagcgccgaaccttcgaacagagagtagaagatgtccggctcatccga 196
|||||||||||||| || | | |||| ||||| |||||||||||||||| || |||| |
Sbjct: 209761708 aaaaccttcaaacaacgtccagcctttgaacaaagagtagaagatgtcctccttatccaa 209761649
Query: 197 gagcagcatcctaccaaaatcccggtaataatagaacgatacaaaggtgagaagcagctt 256
|||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||
Sbjct: 209761648 gagcagcatcctaccaaaatcctagtaatagtagaactatacaaaggtgagaagctgctt 209761589
Query: 257 ccagtcctggataaaacgaaattcctggtgcctgatcatgtcaacatgagtgagctcatc 316
| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 209761588 ctagtcctggataaaacagagttcctggtgcctgatcatgtcaacatgagtgagatcatc 209761529
Query: 317 aagataattagaaggcgcttgcagctcaa--------tgctaaccaagccttcttcctgt 368
| |||||||||||||| ||| ||||||| ||||| ||||||||||||| |
Sbjct: 209761528 aggataattagaaggc-cttatagctcaacactaatcagctaatcaagccttcttccctt 209761470
Query: 369 tagtgaacggacatagcatggtgagtgtgtccacaccgatttgtgaggtgtacgaaagcg 428
||||||| ||||| |||||||||||||||||||||| |||||||| ||||| || || |
Sbjct: 209761469 tagtgaatggacagagcatggtgagtgtgtccacacttatttgtgaagtgtatgacagtg 209761410
Query: 429 agaaggatgaagatggattcctgtacatggtatatgcctctcaggagactttcggaatga 488
| |||| ||||||||||||||| || |||| ||||||||||||||||||||| ||||||
Sbjct: 209761409 aaaaggctgaagatggattcctatatgtggtgtatgcctctcaggagactttcagaatga 209761350
Query: 489 agttgtctgtgtaagactagaaaaatgtatctgtgctagaattttttaaacccttaccaa 548
| ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||
Sbjct: 209761349 aattgtctgtgtaagactagaaaaatgcatctgttctagaa--ttttaaacccttaccaa 209761292
Query: 549 ggaataaaaaagggatgttaccaactgagatttatcagctcatctaatcacagatcatcc 608
|||||||||||||||| || || || ||||||||||||| ||||||
Sbjct: 209761291 ------------ggatgttaccaactgaagttgattagttcatctaatcacaaatcatca 209761244
Query: 609 aaacagtagttttcctgcctaggagtcttaggaagttgtttttgtacttcacgcagaaaa 668
|| |||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 209761243 gaagagtaatgttcctgcctaggagttttagaaagttgtttttgtacttcacgcagaaaa 209761184
Query: 669 acggagctccggacgagcacattcagctttggaaaactttattacttaacctaggctgtt 728
|| ||||||| | |||| ||||||||||| |||||||||| || ||||||||| ||||
Sbjct: 209761183 actgagctccaaaggagcccattcagctttagaaaactttaatatttaacctagcctgtc 209761124
Query: 729 ttgttttcacatacagaagtttaaaaaataaaatactttgcattctaagttgccagtaaa 788
||||||||| || |||||||| |||||||||||||||||||||||||| ||||| | ||
Sbjct: 209761123 ttgttttcaaatttagaagttt-aaaaataaaatactttgcattctaagctgccaatgaa 209761065
Query: 789 atagattttcaagttatttttaatgctcttttcccaaaaggaacttagaatttgagcatt 848
||||| | ||| || ||||||| || | |||||||||||||| ||||||||||||
Sbjct: 209761064 atagaccctgaaggta-ttttaatatcctctccccaaaaggaacttgcaatttgagcatt 209761006
Query: 849 cagagggacagttaagtcttgtctctaggttcatagaacctgccaactttttatggaagg 908
|| | |||| ||||||||| ||| |||||||| | ||||||||||||||| |||| |
Sbjct: 209761005 caaaaagacatttaagtcttctcttgcggttcataaatcctgccaacttttta-ggaaag 209760947
Query: 909 gtttctactcaa 920
|||||||||||
Sbjct: 209760946 atttctactcaa 209760935
Score = 71.9 bits (36), Expect = 7e-10
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 423 aaagcgagaaggatgaagatggattcctgtacatggtatatgcctctcaggagactttcg 482
|||| |||||||||||||||||||||||||| |||||| || | |||||||||| || |
Sbjct: 114863704 aaagtgagaaggatgaagatggattcctgtaattggtatttgacactcaggagacatttg 114863645
Query: 483 gaatgaagttgtctgtgtaa 502
||||||| ||| | ||||||
Sbjct: 114863644 gaatgaaattgccagtgtaa 114863625
>Sscrofa_Chr17
|| Length = 69701581
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 236 tacaaaggtgagaagcagcttccagtcctggataaaacgaaattcctggtgcctgatcat 295
||||| |||||||||||||| ||||||||||| || || || |||||||| || || |||
Sbjct: 43156519 tacaagggtgagaagcagctgccagtcctggacaagaccaagttcctggtcccagaccat 43156578
Query: 296 gtcaacatgag 306
|||||||||||
Sbjct: 43156579 gtcaacatgag 43156589
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,652,198
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 12
Length of query: 1125
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1104
Effective length of database: 2,808,413,156
Effective search space: 3100488124224
Effective search space used: 3100488124224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)