Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos ... 458 e-129
Alignment gi|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform ... 458 e-129
Alignment gi|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus]. 220 2e-57
Alignment gi|XP_002688526.1| PREDICTED: actin binding LIM protein family,... 183 2e-46
Alignment gi|XP_875649.4| PREDICTED: actin binding LIM protein family, me... 183 2e-46
Alignment gi|NP_001029603.1| dematin [Bos taurus]. 141 1e-33
>ref|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos taurus].
Length = 709
Score = 458 bits (1179), Expect = e-129
Identities = 237/313 (75%), Positives = 238/313 (76%), Gaps = 63/313 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 369
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 370 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 492
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 341
Query: 493 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 672
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDR IHR
Sbjct: 342 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRMIHR 401
Query: 673 STSQGSINSPGYSRHSYTPTTSRSPQHFHRP----------------------------- 765
STSQGSINSP YSRHSYTPTTSRSPQHFHRP
Sbjct: 402 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 461
Query: 766 ------DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 927
DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW
Sbjct: 462 KHFHVPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 521
Query: 928 PGPPSLAAVGADT 966
PGPPSLAAVGADT
Sbjct: 522 PGPPSLAAVGADT 534
>ref|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform 2 [Bos taurus].
Length = 709
Score = 458 bits (1179), Expect = e-129
Identities = 237/313 (75%), Positives = 238/313 (76%), Gaps = 63/313 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 369
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 370 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 492
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 341
Query: 493 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 672
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDR IHR
Sbjct: 342 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRMIHR 401
Query: 673 STSQGSINSPGYSRHSYTPTTSRSPQHFHRP----------------------------- 765
STSQGSINSP YSRHSYTPTTSRSPQHFHRP
Sbjct: 402 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 461
Query: 766 ------DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 927
DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW
Sbjct: 462 KHFHVPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 521
Query: 928 PGPPSLAAVGADT 966
PGPPSLAAVGADT
Sbjct: 522 PGPPSLAAVGADT 534
>ref|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus].
Length = 683
Score = 220 bits (560), Expect = 2e-57
Identities = 128/278 (46%), Positives = 162/278 (58%), Gaps = 35/278 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 398
Query: 757 HR--PDQG-------------------------------INIYRKPPIYKQHAAL--AAQ 831
+R P+ G NIYRKPPIYK+H L A +
Sbjct: 399 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTATK 458
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
SK+SEDI + SK+ A +PDP + E + G P +
Sbjct: 459 SKTSEDISQASKYSPAYSPDPYYATESEYWTYHGSPKV 496
>ref|XP_002688526.1| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 696
Score = 183 bits (465), Expect = 2e-46
Identities = 112/253 (44%), Positives = 138/253 (54%), Gaps = 52/253 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 276 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 335
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S D+
Sbjct: 336 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSVGDR 395
Query: 577 QERQSLGESP-------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSINS- 699
Q S GE RT SP TP++ Q A S S S
Sbjct: 396 QS-YSEGEQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCLSL 454
Query: 700 ---PGYS---RHSYTP-------------------------TTSRSPQHFHRPDQGI--N 780
P S RH Y P T ++P+HFH PD G+ N
Sbjct: 455 SQHPSPSSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDN 514
Query: 781 IYRKPPIYKQHAA 819
IYRKPPIYKQHAA
Sbjct: 515 IYRKPPIYKQHAA 527
>ref|XP_875649.4| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 632
Score = 183 bits (465), Expect = 2e-46
Identities = 112/253 (44%), Positives = 138/253 (54%), Gaps = 52/253 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 212 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 271
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S D+
Sbjct: 272 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSVGDR 331
Query: 577 QERQSLGESP-------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSINS- 699
Q S GE RT SP TP++ Q A S S S
Sbjct: 332 QS-YSEGEQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCLSL 390
Query: 700 ---PGYS---RHSYTP-------------------------TTSRSPQHFHRPDQGI--N 780
P S RH Y P T ++P+HFH PD G+ N
Sbjct: 391 SQHPSPSSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDN 450
Query: 781 IYRKPPIYKQHAA 819
IYRKPPIYKQHAA
Sbjct: 451 IYRKPPIYKQHAA 463
>ref|NP_001029603.1| dematin [Bos taurus].
Length = 358
Score = 141 bits (356), Expect = 1e-33
Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 10/180 (5%)
Frame = +1
Query: 445 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SPRTL 615
AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP++
Sbjct: 7 AKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSPKST 66
Query: 616 SPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGINIY 786
SP PS E + + R S G+I+ R + TP TS HFH P+ NIY
Sbjct: 67 SPPPSPEVWAESR--------SPGTISQASAPRTAGTPRTSL--PHFHHPETTRPDSNIY 116
Query: 787 RKPPIYKQHAALAAQSKSS---ED-IIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAV 954
+KPPIYKQ + +S ED II+ SKFPAAQ PDP++ KIETD+WP PPSLA V
Sbjct: 117 KKPPIYKQRESTGGSPQSKHPIEDLIIESSKFPAAQPPDPNQPAKIETDYWPCPPSLAVV 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,820,314
Number of extensions: 1335349
Number of successful extensions: 6842
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6790
Number of HSP's successfully gapped: 6
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864887.1| PREDICTED: similar to actin-binding LIM protein... 466 e-131
Alignment gi|XP_864906.1| PREDICTED: similar to actin-binding LIM protein... 441 e-124
Alignment gi|XP_535022.2| PREDICTED: similar to actin-binding LIM protein... 336 2e-92
Alignment gi|XP_864927.1| PREDICTED: similar to actin-binding LIM protein... 330 2e-90
Alignment gi|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein... 220 2e-57
Alignment gi|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein... 178 1e-44
Alignment gi|XP_543258.2| PREDICTED: similar to Dematin (Erythrocyte memb... 143 4e-34
>ref|XP_864887.1| PREDICTED: similar to actin-binding LIM protein 1 isoform a isoform 3
[Canis familiaris].
Length = 778
Score = 466 bits (1200), Expect = e-131
Identities = 233/284 (82%), Positives = 236/284 (83%), Gaps = 35/284 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 417
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSI+SP YSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHF 477
Query: 757 HRP-----------------------------------DQGINIYRKPPIYKQHAALAAQ 831
HRP DQGINIYRKPPIYKQHAALAAQ
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQ 537
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD
Sbjct: 538 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 581
>ref|XP_864906.1| PREDICTED: similar to actin-binding LIM protein 1 isoform s isoform
4 [Canis familiaris].
Length = 427
Score = 441 bits (1134), Expect = e-124
Identities = 215/230 (93%), Positives = 217/230 (94%)
Frame = +1
Query: 274 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRXXXXXXXXXXHTIYAKV 453
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSR HTIYAKV
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRPGSSIPGSPGHTIYAKV 60
Query: 454 DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSA 633
DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPTPSA
Sbjct: 61 DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSA 120
Query: 634 EGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH 813
EGYQD RDR IHRSTSQGSI+SP YSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH
Sbjct: 121 EGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH 180
Query: 814 AALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
AALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD
Sbjct: 181 AALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 230
>ref|XP_535022.2| PREDICTED: similar to actin-binding LIM protein 1 isoform 2 [Canis
familiaris].
Length = 846
Score = 336 bits (862), Expect = 2e-92
Identities = 198/352 (56%), Positives = 209/352 (59%), Gaps = 103/352 (29%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 367 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 492
PTRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 358 FFYPKSLVRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 417
Query: 493 PKVKAIYDIERPDLITYEPFYSSG-------------------------YDDKQER---- 585
PKVKAIYDIERPDLITYEPFY+SG Y D ++R
Sbjct: 418 PKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDSRDRVIHR 477
Query: 586 ---QSLGESP----RTLSPTPSA--------EGYQDGRDRAIHRSTSQGSI--------- 693
Q SP + +PT S E G R H TS S
Sbjct: 478 STSQGSISSPVYSRHSYTPTTSRSPQHFHRPELLSPGVQRLSHLRTSSLSSTHSDSRPNS 537
Query: 694 ------------NSPGYSRHS----------YTPTTSRSPQHFHRPDQGINIYRKPPIYK 807
N P R+S TPT +++P+HFH PDQGINIYRKPPIYK
Sbjct: 538 PFRHHFIPHIKGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYK 597
Query: 808 QHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
QHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD
Sbjct: 598 QHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 649
>ref|XP_864927.1| PREDICTED: similar to actin-binding LIM protein 1 isoform 5 [Canis
familiaris].
Length = 862
Score = 330 bits (846), Expect = 2e-90
Identities = 198/368 (53%), Positives = 209/368 (56%), Gaps = 119/368 (32%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 367 ----------------------------------PTRTSSESIYSRXXXXXXXXXXHTIY 444
PTRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLVRRTGRSPSLQLLSPPCLVNFNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 445 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSG-------------------- 564
AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SG
Sbjct: 418 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPT 477
Query: 565 -----YDDKQER-------QSLGESP----RTLSPTPSA--------EGYQDGRDRAIHR 672
Y D ++R Q SP + +PT S E G R H
Sbjct: 478 PSAEGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHFHRPELLSPGVQRLSHL 537
Query: 673 STSQGSI---------------------NSPGYSRHS----------YTPTTSRSPQHFH 759
TS S N P R+S TPT +++P+HFH
Sbjct: 538 RTSSLSSTHSDSRPNSPFRHHFIPHIKGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFH 597
Query: 760 RPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPP 939
PDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPP
Sbjct: 598 VPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPP 657
Query: 940 SLAAVGAD 963
SLAAVGAD
Sbjct: 658 SLAAVGAD 665
>ref|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein 3 (Actin-binding LIM
protein family member 3) (abLIM3) [Canis familiaris].
Length = 688
Score = 220 bits (560), Expect = 2e-57
Identities = 128/278 (46%), Positives = 162/278 (58%), Gaps = 35/278 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 228 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 286
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 287 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 345
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 346 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 403
Query: 757 HR--PDQG-------------------------------INIYRKPPIYKQHAAL--AAQ 831
+R P+ G NIYRKPPIYK+H L A +
Sbjct: 404 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTATK 463
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
SK+SEDI + SK+ A +PDP + E + G P +
Sbjct: 464 SKTSEDISQASKYSPAYSPDPYYAAESEYWTYHGSPKV 501
>ref|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein 2 (Actin-binding LIM
protein family member 2) (abLIM2) [Canis familiaris].
Length = 858
Score = 178 bits (451), Expect = 1e-44
Identities = 104/252 (41%), Positives = 136/252 (53%), Gaps = 52/252 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TR+SSESI
Sbjct: 438 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRSSSESII 497
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYS------ 558
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S
Sbjct: 498 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSAAGR 557
Query: 559 -----SGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSIN--------- 696
DD+ +Q SP + + + S Y H S G+++
Sbjct: 558 QSCHEGDQDDRSYKQCRTSSPSS-TGSVSLGRYTPTSRSPQHYSRPAGTVSVGTSSCLSL 616
Query: 697 ----SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI--N 780
SP RH Y P T ++P+HFH PD G+ N
Sbjct: 617 SQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPCTYQQAPRHFHVPDTGVKDN 676
Query: 781 IYRKPPIYKQHA 816
IYRKPPIYKQHA
Sbjct: 677 IYRKPPIYKQHA 688
>ref|XP_543258.2| PREDICTED: similar to Dematin (Erythrocyte membrane protein band
4.9) [Canis familiaris].
Length = 401
Score = 143 bits (360), Expect = 4e-34
Identities = 88/183 (48%), Positives = 111/183 (60%), Gaps = 10/183 (5%)
Frame = +1
Query: 436 TIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SP 606
+I AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP
Sbjct: 25 SIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSP 84
Query: 607 RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGI 777
++ SP PS E + + R S G+I+ R + TP TS HFH P+
Sbjct: 85 KSTSPPPSPEVWAESR--------SPGTISQASAPRTTGTPRTSL--PHFHHPETTRPDS 134
Query: 778 NIYRKPPIYKQHAALAAQSKSS---ED-IIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
NIY+KPPIYKQ + +S ED II+ SKFPAAQ PDP++ KIETD+WP PPSL
Sbjct: 135 NIYKKPPIYKQRESTGGSPQSKHLIEDLIIESSKFPAAQPPDPNQPAKIETDYWPCPPSL 194
Query: 946 AAV 954
A V
Sbjct: 195 AVV 197
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,679,839
Number of extensions: 1364217
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6711
Number of HSP's successfully gapped: 10
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus m... 461 e-130
Alignment gi|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musc... 357 1e-98
Alignment gi|NP_001096648.1| actin-binding LIM protein 1 isoform 3 [Mus m... 313 1e-85
Alignment gi|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus]. 220 2e-57
Alignment gi|NP_941051.2| actin-binding LIM protein 3 [Mus musculus]. 220 2e-57
Alignment gi|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus m... 202 4e-52
Alignment gi|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus m... 199 4e-51
Alignment gi|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musc... 199 4e-51
Alignment gi|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus m... 188 8e-48
Alignment gi|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus m... 178 6e-45
>ref|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus musculus].
Length = 701
Score = 461 bits (1187), Expect = e-130
Identities = 230/284 (80%), Positives = 235/284 (82%), Gaps = 35/284 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 281
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGY+DK
Sbjct: 282 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDK 341
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 342 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 401
Query: 757 HRP-----------------------------------DQGINIYRKPPIYKQHAALAAQ 831
HRP DQGINIYRKPPIYKQHAALAAQ
Sbjct: 402 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQ 461
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
SK+SEDIIKFSKFPAAQAPDP+EIPKIETDHWPGPPSLAAVG D
Sbjct: 462 SKASEDIIKFSKFPAAQAPDPNEIPKIETDHWPGPPSLAAVGTD 505
>ref|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musculus].
Length = 861
Score = 357 bits (915), Expect = 1e-98
Identities = 203/368 (55%), Positives = 216/368 (58%), Gaps = 119/368 (32%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 369
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIPRSSSD 357
Query: 370 -----------------------------------TRTSSESIYSRXXXXXXXXXXHTIY 444
TRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLIRRTGRSPALQLLSPPCLMNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 445 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTL--- 615
AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGY+DKQERQSLGESPRTL
Sbjct: 418 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQERQSLGESPRTLSPT 477
Query: 616 ------------------------SPTPSAEGYQDGRDRA-------------IHR---- 672
SP S Y R+ +HR
Sbjct: 478 PSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPELLSPGVHRWSPL 537
Query: 673 ------STSQGSINSPGYSRH-------------------------SYTPTTSRSPQHFH 759
ST S +P + H TPT +++P+HFH
Sbjct: 538 RTSSFSSTHSDSRPNPPFRHHFLPHVKGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFH 597
Query: 760 RPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPP 939
PDQGINIYRKPPIYKQHAALAAQSK+SEDIIKFSKFPAAQAPDP+EIPKIETDHWPGPP
Sbjct: 598 VPDQGINIYRKPPIYKQHAALAAQSKASEDIIKFSKFPAAQAPDPNEIPKIETDHWPGPP 657
Query: 940 SLAAVGAD 963
SLAAVG D
Sbjct: 658 SLAAVGTD 665
>ref|NP_001096648.1| actin-binding LIM protein 1 isoform 3 [Mus musculus].
Length = 545
Score = 313 bits (803), Expect = 1e-85
Identities = 185/349 (53%), Positives = 197/349 (56%), Gaps = 119/349 (34%)
Frame = +1
Query: 274 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP---------------------------- 369
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIPRSSSDFFYPKSLIRRTGRSPALQL 60
Query: 370 ----------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKV 501
TRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKV
Sbjct: 61 LSPPCLMNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKV 120
Query: 502 KAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTL---------------------- 615
KAIYDIERPDLITYEPFY+SGY+DKQERQSLGESPRTL
Sbjct: 121 KAIYDIERPDLITYEPFYTSGYEDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTS 180
Query: 616 -----SPTPSAEGYQDGRDRA-------------IHR----------STSQGSINSPGYS 711
SP S Y R+ +HR ST S +P +
Sbjct: 181 QGSINSPVYSRHSYTPTTSRSPQHFHRPELLSPGVHRWSPLRTSSFSSTHSDSRPNPPFR 240
Query: 712 RH-------------------------SYTPTTSRSPQHFHRPDQGINIYRKPPIYKQHA 816
H TPT +++P+HFH PDQGINIYRKPPIYKQHA
Sbjct: 241 HHFLPHVKGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHA 300
Query: 817 ALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
ALAAQSK+SEDIIKFSKFPAAQAPDP+EIPKIETDHWPGPPSLAAVG D
Sbjct: 301 ALAAQSKASEDIIKFSKFPAAQAPDPNEIPKIETDHWPGPPSLAAVGTD 349
>ref|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 220 bits (560), Expect = 2e-57
Identities = 128/277 (46%), Positives = 160/277 (57%), Gaps = 34/277 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSP--- 747
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHYY 398
Query: 748 -----------------------------QHFHRPDQGINIYRKPPIYKQHAAL--AAQS 834
+HFH P NIYRKPPIYK+H L A +S
Sbjct: 399 RSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTATKS 458
Query: 835 KSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
K+SEDI + SK+ A +PDP + E + G P +
Sbjct: 459 KTSEDISQASKYSPAYSPDPYYASESEYWTYHGSPKV 495
>ref|NP_941051.2| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 220 bits (560), Expect = 2e-57
Identities = 128/277 (46%), Positives = 160/277 (57%), Gaps = 34/277 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSP--- 747
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHYY 398
Query: 748 -----------------------------QHFHRPDQGINIYRKPPIYKQHAAL--AAQS 834
+HFH P NIYRKPPIYK+H L A +S
Sbjct: 399 RSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTATKS 458
Query: 835 KSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
K+SEDI + SK+ A +PDP + E + G P +
Sbjct: 459 KTSEDISQASKYSPAYSPDPYYASESEYWTYHGSPKV 495
>ref|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus musculus].
Length = 617
Score = 202 bits (514), Expect = 4e-52
Identities = 119/267 (44%), Positives = 148/267 (55%), Gaps = 66/267 (24%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPG-------------YSR- 714
+RQS GESP+ LSPTP+ EG QD R R++S S S YSR
Sbjct: 343 GDRQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRP 401
Query: 715 -------------------------HSYTP-------------------------TTSRS 744
H Y P T ++
Sbjct: 402 AGTVSVGTSSCLSLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPPSSTYQQA 461
Query: 745 PQHFHRPDQGI--NIYRKPPIYKQHAA 819
P+HFH PD G+ NIYRKPPIYKQHAA
Sbjct: 462 PRHFHVPDTGVKDNIYRKPPIYKQHAA 488
>ref|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus musculus].
Length = 573
Score = 199 bits (505), Expect = 4e-51
Identities = 109/222 (49%), Positives = 142/222 (63%), Gaps = 21/222 (9%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 577 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA---IHRSTSQGSINSPGYS 711
+RQS GE RT SP+ + G+ R+ R S+ ++P S
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPGSESGRSTPSLS 402
Query: 712 RHS----YTPTTSRSPQHFHRPDQGI--NIYRKPPIYKQHAA 819
HS + T ++P+HFH PD G+ NIYRKPPIYKQHAA
Sbjct: 403 VHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAA 444
>ref|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musculus].
Length = 612
Score = 199 bits (505), Expect = 4e-51
Identities = 109/222 (49%), Positives = 142/222 (63%), Gaps = 21/222 (9%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 577 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA---IHRSTSQGSINSPGYS 711
+RQS GE RT SP+ + G+ R+ R S+ ++P S
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPGSESGRSTPSLS 402
Query: 712 RHS----YTPTTSRSPQHFHRPDQGI--NIYRKPPIYKQHAA 819
HS + T ++P+HFH PD G+ NIYRKPPIYKQHAA
Sbjct: 403 VHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAA 444
>ref|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus musculus].
Length = 606
Score = 188 bits (477), Expect = 8e-48
Identities = 112/255 (43%), Positives = 144/255 (56%), Gaps = 54/255 (21%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 577 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA-IHRSTSQGSIN------- 696
+RQS GE RT SP+ + G+ R+ H S G+++
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPAGTVSVGTSSCL 402
Query: 697 ------SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 777
SP RH Y P T ++P+HFH PD G+
Sbjct: 403 SLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPDTGVK 462
Query: 778 -NIYRKPPIYKQHAA 819
NIYRKPPIYKQHAA
Sbjct: 463 DNIYRKPPIYKQHAA 477
>ref|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus musculus].
Length = 664
Score = 178 bits (452), Expect = 6e-45
Identities = 113/274 (41%), Positives = 145/274 (52%), Gaps = 73/274 (26%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEK------------ 360
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKMHSSVCSQPC 284
Query: 361 -------LRPTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDI 519
L+ TRTSSESI S IYAK+ +EILDY+DLAA+PK KAIY+I
Sbjct: 285 PGTLPCALQETRTSSESIVSVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNI 344
Query: 520 ERPDLITYEPFYSSGYDDKQERQSLGESP---------RTLSPTPSAE---GYQDGRDRA 663
+RPD+I+Y P+ S + +RQS GE RT SP+ + G+ R+
Sbjct: 345 DRPDMISYSPYIS--HSAVGDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRS 402
Query: 664 -IHRSTSQGSIN-------------SP-GYSRHSYTP----------------------- 729
H S G+++ SP RH Y P
Sbjct: 403 PQHYSRPAGTVSVGTSSCLSLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPP 462
Query: 730 --TTSRSPQHFHRPDQGI--NIYRKPPIYKQHAA 819
T ++P+HFH PD G+ NIYRKPPIYKQHAA
Sbjct: 463 SSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAA 496
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,548,450
Number of extensions: 1122562
Number of successful extensions: 5623
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5562
Number of HSP's successfully gapped: 19
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isofo... 496 e-141
Alignment gi|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isofo... 479 e-135
Alignment gi|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isofo... 464 e-131
Alignment gi|XP_003359426.1| PREDICTED: actin-binding LIM protein 1-like ... 372 e-103
Alignment gi|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like ... 184 1e-46
Alignment gi|XP_001927210.2| PREDICTED: dematin isoform 2 [Sus scrofa]. 139 2e-33
>ref|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isoform 2 [Sus scrofa].
Length = 577
Score = 496 bits (1278), Expect = e-141
Identities = 239/250 (95%), Positives = 240/250 (96%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 130 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 189
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK
Sbjct: 190 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 249
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF
Sbjct: 250 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 309
Query: 757 HRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGP 936
HRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGP
Sbjct: 310 HRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGP 369
Query: 937 PSLAAVGADT 966
PSLAAVGADT
Sbjct: 370 PSLAAVGADT 379
>ref|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isoform 1 [Sus scrofa].
Length = 780
Score = 479 bits (1232), Expect = e-135
Identities = 239/285 (83%), Positives = 240/285 (84%), Gaps = 35/285 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 417
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 477
Query: 757 HRP-----------------------------------DQGINIYRKPPIYKQHAALAAQ 831
HRP DQGINIYRKPPIYKQHAALAAQ
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQ 537
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT 966
SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT
Sbjct: 538 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT 582
>ref|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isoform 3 [Sus scrofa].
Length = 731
Score = 464 bits (1193), Expect = e-131
Identities = 239/313 (76%), Positives = 240/313 (76%), Gaps = 63/313 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 369
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 221 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIHRSPSD 280
Query: 370 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 492
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 281 FFYPKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 340
Query: 493 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 672
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR
Sbjct: 341 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 400
Query: 673 STSQGSINSPGYSRHSYTPTTSRSPQHFHRP----------------------------- 765
STSQGSINSPGYSRHSYTPTTSRSPQHFHRP
Sbjct: 401 STSQGSINSPGYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 460
Query: 766 ------DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 927
DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW
Sbjct: 461 KHFHVPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 520
Query: 928 PGPPSLAAVGADT 966
PGPPSLAAVGADT
Sbjct: 521 PGPPSLAAVGADT 533
>ref|XP_003359426.1| PREDICTED: actin-binding LIM protein 1-like [Sus scrofa].
Length = 566
Score = 372 bits (956), Expect = e-103
Identities = 191/238 (80%), Positives = 193/238 (81%), Gaps = 35/238 (14%)
Frame = +1
Query: 358 KLRPTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI 537
+L+PTRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI
Sbjct: 131 RLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI 190
Query: 538 TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH 717
TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH
Sbjct: 191 TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH 250
Query: 718 SYTPTTSRSPQHFHRP-----------------------------------DQGINIYRK 792
SYTPTTSRSPQHFHRP DQGINIYRK
Sbjct: 251 SYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRK 310
Query: 793 PPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT 966
PPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT
Sbjct: 311 PPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGADT 368
>ref|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like [Sus scrofa].
Length = 669
Score = 184 bits (466), Expect = 1e-46
Identities = 111/255 (43%), Positives = 136/255 (53%), Gaps = 54/255 (21%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHP CA C RC +MF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 249 EAGEKHYHPLCALCVRCGRMFSEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 308
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ +EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 309 SVPASSASGSPSRVIYAKLGDEILDYRDLAALPKSKAIYDIDRPDMISYAPYVSHSVGD- 367
Query: 577 QERQSLGESP---------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSIN 696
RQS E RT SP TP++ Q A S S
Sbjct: 368 --RQSCSEGDRDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCL 425
Query: 697 S-------PGYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 777
S P R Y P T ++P+HFH PD G+
Sbjct: 426 SLPQHPSPPSVFRRHYVPYFRGSESGRSTPSLSVPPDSKPPPSTYQQAPRHFHVPDTGVK 485
Query: 778 -NIYRKPPIYKQHAA 819
NIYRKPPIYKQHAA
Sbjct: 486 DNIYRKPPIYKQHAA 500
>ref|XP_001927210.2| PREDICTED: dematin isoform 2 [Sus scrofa].
Length = 405
Score = 139 bits (351), Expect = 2e-33
Identities = 87/183 (47%), Positives = 108/183 (59%), Gaps = 10/183 (5%)
Frame = +1
Query: 436 TIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SP 606
+I AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP
Sbjct: 29 SIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSP 88
Query: 607 RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGI 777
++ SP PS E + + R S G+ R + TP TS HFH P+
Sbjct: 89 KSTSPPPSPEVWAESR--------SPGTFPQASAPRTTGTPRTSL--PHFHHPETTRPDS 138
Query: 778 NIYRKPPIYKQHAALAAQSKSS---ED-IIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
NIY+KPPIYKQ +S ED II+ SKFPAAQ PDP++ KIETD+WP PPSL
Sbjct: 139 NIYKKPPIYKQREPTGGSPQSKHLIEDLIIESSKFPAAQPPDPNQPAKIETDYWPCPPSL 198
Query: 946 AAV 954
A V
Sbjct: 199 AVV 201
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,520,099
Number of extensions: 856727
Number of successful extensions: 4286
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4236
Number of HSP's successfully gapped: 7
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo ... 460 e-129
Alignment gi|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sap... 460 e-129
Alignment gi|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo ... 445 e-125
Alignment gi|NP_006711.3| actin-binding LIM protein 1 isoform s [Homo sap... 419 e-117
Alignment gi|NP_055760.1| actin-binding LIM protein 3 [Homo sapiens]. 218 1e-56
Alignment gi|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo ... 201 1e-51
Alignment gi|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo ... 201 1e-51
Alignment gi|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo ... 195 6e-50
Alignment gi|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo ... 195 6e-50
Alignment gi|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo ... 187 2e-47
>ref|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo sapiens].
Length = 718
Score = 460 bits (1183), Expect = e-129
Identities = 230/284 (80%), Positives = 232/284 (81%), Gaps = 35/284 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 297
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 298 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 357
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 358 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 417
Query: 757 HRP-----------------------------------DQGINIYRKPPIYKQHAALAAQ 831
HRP DQGINIYRKPPIYKQHAALAAQ
Sbjct: 418 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQ 477
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
SKSSEDIIKFSKFPAAQAPDPSE PKIETDHWPGPPS A VG D
Sbjct: 478 SKSSEDIIKFSKFPAAQAPDPSETPKIETDHWPGPPSFAVVGPD 521
>ref|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sapiens].
Length = 778
Score = 460 bits (1183), Expect = e-129
Identities = 230/284 (80%), Positives = 232/284 (81%), Gaps = 35/284 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 417
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 477
Query: 757 HRP-----------------------------------DQGINIYRKPPIYKQHAALAAQ 831
HRP DQGINIYRKPPIYKQHAALAAQ
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQ 537
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSLAAVGAD 963
SKSSEDIIKFSKFPAAQAPDPSE PKIETDHWPGPPS A VG D
Sbjct: 538 SKSSEDIIKFSKFPAAQAPDPSETPKIETDHWPGPPSFAVVGPD 581
>ref|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo sapiens].
Length = 746
Score = 445 bits (1144), Expect = e-125
Identities = 230/312 (73%), Positives = 232/312 (74%), Gaps = 63/312 (20%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNIRRSSSD 297
Query: 367 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 492
PTRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 298 FFYSKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 357
Query: 493 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 672
PKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPTPSAEGYQD RDR IHR
Sbjct: 358 PKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHR 417
Query: 673 STSQGSINSPGYSRHSYTPTTSRSPQHFHRP----------------------------- 765
STSQGSINSP YSRHSYTPTTSRSPQHFHRP
Sbjct: 418 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 477
Query: 766 ------DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPKIETDHW 927
DQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSE PKIETDHW
Sbjct: 478 KHFHVPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSETPKIETDHW 537
Query: 928 PGPPSLAAVGAD 963
PGPPS A VG D
Sbjct: 538 PGPPSFAVVGPD 549
>ref|NP_006711.3| actin-binding LIM protein 1 isoform s [Homo sapiens].
Length = 455
Score = 419 bits (1078), Expect = e-117
Identities = 212/258 (82%), Positives = 213/258 (82%), Gaps = 28/258 (10%)
Frame = +1
Query: 274 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR----------------------------P 369
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR P
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNIRRSSSDFFYSKSLIRRTGRSPSLQP 60
Query: 370 TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP 549
TRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP
Sbjct: 61 TRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP 120
Query: 550 FYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 729
FY+SGYDDKQERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTP
Sbjct: 121 FYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTP 180
Query: 730 TTSRSPQHFHRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSEIPK 909
TTSRSPQHFHRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSE PK
Sbjct: 181 TTSRSPQHFHRPDQGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSETPK 240
Query: 910 IETDHWPGPPSLAAVGAD 963
IETDHWPGPPS A VG D
Sbjct: 241 IETDHWPGPPSFAVVGPD 258
>ref|NP_055760.1| actin-binding LIM protein 3 [Homo sapiens].
Length = 683
Score = 218 bits (554), Expect = 1e-56
Identities = 127/278 (45%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYMSDEM 340
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 398
Query: 757 HR--PDQG-------------------------------INIYRKPPIYKQHAAL--AAQ 831
+R P+ G NIYRKPPIYK+H L A +
Sbjct: 399 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGDSNIYRKPPIYKRHGDLSTATK 458
Query: 832 SKSSEDIIKFSKFPAAQAPDPSEIPKIETDHWPGPPSL 945
SK+SEDI + SK+ +PDP + E + G P +
Sbjct: 459 SKTSEDISQTSKYSPIYSPDPYYASESEYWTYHGSPKV 496
>ref|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo sapiens].
Length = 470
Score = 201 bits (510), Expect = 1e-51
Identities = 105/183 (57%), Positives = 127/183 (69%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
RQS GESP+ LSPTP+ EG QD R R++S S S R YTP TSRSPQH+
Sbjct: 344 --RQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSTGSVSLGR--YTP-TSRSPQHY 397
Query: 757 HRP 765
RP
Sbjct: 398 SRP 400
>ref|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo sapiens].
Length = 531
Score = 201 bits (510), Expect = 1e-51
Identities = 105/183 (57%), Positives = 127/183 (69%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 577 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 756
RQS GESP+ LSPTP+ EG QD R R++S S S R YTP TSRSPQH+
Sbjct: 344 --RQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSTGSVSLGR--YTP-TSRSPQHY 397
Query: 757 HRP 765
RP
Sbjct: 398 SRP 400
>ref|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo sapiens].
Length = 572
Score = 195 bits (496), Expect = 6e-50
Identities = 111/225 (49%), Positives = 135/225 (60%), Gaps = 24/225 (10%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 577 QERQSLGESP---------RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 729
RQS GE RT SP+ S GR RS S PG TP
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPS-STGSVSLGRYTPTSRSPQHYS--RPGSESGRSTP 398
Query: 730 TTS-------------RSPQHFHRPDQGI--NIYRKPPIYKQHAA 819
+ S ++P+HFH PD G+ NIYRKPPIY+QHAA
Sbjct: 399 SLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDNIYRKPPIYRQHAA 443
>ref|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo sapiens].
Length = 611
Score = 195 bits (496), Expect = 6e-50
Identities = 111/225 (49%), Positives = 135/225 (60%), Gaps = 24/225 (10%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 577 QERQSLGESP---------RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 729
RQS GE RT SP+ S GR RS S PG TP
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPS-STGSVSLGRYTPTSRSPQHYS--RPGSESGRSTP 398
Query: 730 TTS-------------RSPQHFHRPDQGI--NIYRKPPIYKQHAA 819
+ S ++P+HFH PD G+ NIYRKPPIY+QHAA
Sbjct: 399 SLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDNIYRKPPIYRQHAA 443
>ref|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo sapiens].
Length = 645
Score = 187 bits (475), Expect = 2e-47
Identities = 112/255 (43%), Positives = 138/255 (54%), Gaps = 54/255 (21%)
Frame = +1
Query: 217 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 396
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 397 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 576
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 577 QERQSLGESP---------RTLSPTP----SAEGYQDGRDRAIHRSTSQGSIN------- 696
RQS GE RT SP+ S Y H S G+++
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTVSVGTSSCL 401
Query: 697 ------SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 777
SP RH Y P T ++P+HFH PD G+
Sbjct: 402 SLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVK 461
Query: 778 -NIYRKPPIYKQHAA 819
NIYRKPPIY+QHAA
Sbjct: 462 DNIYRKPPIYRQHAA 476
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,795,570
Number of extensions: 1345556
Number of successful extensions: 6697
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6622
Number of HSP's successfully gapped: 19
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007588
(1153 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 406 e-110
>Sscrofa_Chr14
|| Length = 153851969
Score = 406 bits (205), Expect = e-110
Identities = 214/217 (98%)
Strand = Plus / Minus
Query: 4 gtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgcttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 135972470 gtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgcatc 135972411
Query: 64 ggagaggggccagcgtcctcggggagggcagagagccccgggctgaggtccggcgtccac 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 135972410 ggagaggggccagtgtcctcggggagggcagagagccccgggctgaggtccggtgtccac 135972351
Query: 124 aagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacagcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972350 aagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacagcca 135972291
Query: 184 gggacagaggtagaagaaaagaagccctggcgtaagg 220
|||||||||||||||||||||||||||||||||||||
Sbjct: 135972290 gggacagaggtagaagaaaagaagccctggcgtaagg 135972254
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 445 gcaaaagtcgacaatgaaatcctggattacaaggatttagcagctattcccaaggtcaag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135917823 gcaaaagtcgacaatgaaatcctggattacaaggatttagcagctattcccaaggtcaag 135917764
Query: 505 gcgatttacgacatcgaacgtccagatcttattacctatgagccattctactcttcaggc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135917763 gcgatttacgacatcgaacgtccagatcttattacctatgagccattctactcttcaggc 135917704
Query: 565 tatgatgacaaacaggagaggcagagcctgggagag 600
||||||||||||||||||||||||||||||||||||
Sbjct: 135917703 tatgatgacaaacaggagaggcagagcctgggagag 135917668
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 814 gctgccttggcagcccagagcaagtcttcagaagacatcatcaagttttccaagttccca 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135897113 gctgccttggcagcccagagcaagtcttcagaagacatcatcaagttttccaagttccca 135897054
Query: 874 gcagcccaggctccagaccccagcgagataccaaagattgagacggaccactggcctggt 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135897053 gcagcccaggctccagaccccagcgagataccaaagattgagacggaccactggcctggt 135896994
Query: 934 cccccctcacttgctgccgtagg 956
|||||||||||||||||||||||
Sbjct: 135896993 cccccctcacttgctgccgtagg 135896971
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 637 ggctaccaggacggtcgggatcgggcgatccaccggtccaccagccagggctccatcaac 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135913541 ggctaccaggacggtcgggatcgggcgatccaccggtccaccagccagggctccatcaac 135913482
Query: 697 tcccccgggtacagccggcacagctacactccgaccacgtctcgctctccccagcacttc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135913481 tcccccgggtacagccggcacagctacactccgaccacgtctcgctctccccagcacttc 135913422
Query: 757 cacagacccg 766
||||||||||
Sbjct: 135913421 cacagacccg 135913412
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 218 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135937398 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 135937339
Query: 278 tcacagaaggagaggaaatgtatcttcaaggt 309
||||||||||||||||||||||||||||||||
Sbjct: 135937338 tcacagaaggagaggaaatgtatcttcaaggt 135937307
Score = 172 bits (87), Expect = 3e-40
Identities = 93/95 (97%)
Strand = Plus / Minus
Query: 953 taggagctgacacgagacgcagatctagcggccgagaggaagatgatgaggaactgctga 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135894449 taggagctgacacgagacgcagatctagcggccgagaggaagatgatgaggaactgctga 135894390
Query: 1013 aacgccggcagcttcaaaaggagcagttaatgaag 1047
|||||||||||||||| |||||||||||||||||
Sbjct: 135894389 gacgccggcagcttcaagaggagcagttaatgaag 135894355
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 366 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918907 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 135918848
Query: 426 cccaggtcataccatctatg 445
||||||||||||||||||||
Sbjct: 135918847 cccaggtcataccatctatg 135918828
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 306 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135932670 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 135932611
Query: 366 g 366
|
Sbjct: 135932610 g 135932610
Score = 109 bits (55), Expect = 3e-21
Identities = 92/103 (89%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1051 actcaggcctgggccagttgatactggaagaaaaaattgagaaggagagaaagagcccgg 1110
|||||||||||||||||||||||||| ||||| | || |||||||||||| |||| ||||
Sbjct: 135893016 actcaggcctgggccagttgatactgaaagaagagatggagaaggagagagagag-ccgg 135892958
Query: 1111 aaaaggtccaccctggcagccagtccctacaattttcccatca 1153
| |||||||||||||||||||||| |||| ||| ||||||||
Sbjct: 135892957 gagaggtccaccctggcagccagtcgctacgattctcccatca 135892915
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 766 gatcaagggatcaacatttaccgaaaaccacccatctacaaacagcatg 814
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135900303 gatcaagggatcaacatttaccgaaaaccacccatctacaaacagcatg 135900255
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 599 agtctccaaggactttgtccccgactccatcagcagaag 637
|||||||||||||||||||||||||||||||||||||||
Sbjct: 135915670 agtctccaaggactttgtccccgactccatcagcagaag 135915632
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,245,919
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 11
Length of query: 1153
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1132
Effective length of database: 2,808,413,156
Effective search space: 3179123692592
Effective search space used: 3179123692592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)