Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos ... 357 9e-99
Alignment gi|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform ... 357 9e-99
Alignment gi|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus]. 200 1e-51
Alignment gi|XP_002688526.1| PREDICTED: actin binding LIM protein family,... 181 7e-46
Alignment gi|XP_875649.4| PREDICTED: actin binding LIM protein family, me... 181 7e-46
Alignment gi|NP_001029603.1| dematin [Bos taurus]. 97 3e-20
>ref|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos taurus].
Length = 709
Score = 357 bits (916), Expect = 9e-99
Identities = 186/262 (70%), Positives = 187/262 (71%), Gaps = 63/262 (24%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 367 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 489
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 341
Query: 490 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 669
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDR IHR
Sbjct: 342 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRMIHR 401
Query: 670 STSQGSINSPGYSRHSYTPTTSRSPQHFHR------------------------------ 759
STSQGSINSP YSRHSYTPTTSRSPQHFHR
Sbjct: 402 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 461
Query: 760 -----PDQGINIYRKPPIYKQH 810
PDQGINIYRKPPIYKQH
Sbjct: 462 KHFHVPDQGINIYRKPPIYKQH 483
>ref|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform 2 [Bos taurus].
Length = 709
Score = 357 bits (916), Expect = 9e-99
Identities = 186/262 (70%), Positives = 187/262 (71%), Gaps = 63/262 (24%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 367 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 489
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 341
Query: 490 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 669
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDR IHR
Sbjct: 342 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRMIHR 401
Query: 670 STSQGSINSPGYSRHSYTPTTSRSPQHFHR------------------------------ 759
STSQGSINSP YSRHSYTPTTSRSPQHFHR
Sbjct: 402 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 461
Query: 760 -----PDQGINIYRKPPIYKQH 810
PDQGINIYRKPPIYKQH
Sbjct: 462 KHFHVPDQGINIYRKPPIYKQH 483
>ref|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus].
Length = 683
Score = 200 bits (509), Expect = 1e-51
Identities = 112/233 (48%), Positives = 138/233 (59%), Gaps = 33/233 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 398
Query: 754 HR--PDQG-------------------------------INIYRKPPIYKQHG 813
+R P+ G NIYRKPPIYK+HG
Sbjct: 399 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHG 451
>ref|XP_002688526.1| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 696
Score = 181 bits (460), Expect = 7e-46
Identities = 111/255 (43%), Positives = 137/255 (53%), Gaps = 52/255 (20%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 276 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 335
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S D+
Sbjct: 336 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSVGDR 395
Query: 574 QERQSLGESP-------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSINS- 696
Q S GE RT SP TP++ Q A S S S
Sbjct: 396 QS-YSEGEQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCLSL 454
Query: 697 ---PGYS---RHSYTP-------------------------TTSRSPQHFHRPDQGI--N 777
P S RH Y P T ++P+HFH PD G+ N
Sbjct: 455 SQHPSPSSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDN 514
Query: 778 IYRKPPIYKQHGKTR 822
IYRKPPIYKQH R
Sbjct: 515 IYRKPPIYKQHAARR 529
>ref|XP_875649.4| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 632
Score = 181 bits (460), Expect = 7e-46
Identities = 111/255 (43%), Positives = 137/255 (53%), Gaps = 52/255 (20%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 212 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 271
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S D+
Sbjct: 272 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSVGDR 331
Query: 574 QERQSLGESP-------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSINS- 696
Q S GE RT SP TP++ Q A S S S
Sbjct: 332 QS-YSEGEQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCLSL 390
Query: 697 ---PGYS---RHSYTP-------------------------TTSRSPQHFHRPDQGI--N 777
P S RH Y P T ++P+HFH PD G+ N
Sbjct: 391 SQHPSPSSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDN 450
Query: 778 IYRKPPIYKQHGKTR 822
IYRKPPIYKQH R
Sbjct: 451 IYRKPPIYKQHAARR 465
>ref|NP_001029603.1| dematin [Bos taurus].
Length = 358
Score = 96.7 bits (239), Expect = 3e-20
Identities = 60/132 (45%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Frame = +1
Query: 442 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SPRTL 612
AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP++
Sbjct: 7 AKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSPKST 66
Query: 613 SPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGINIY 783
SP PS E + + R S G+I+ R + TP TS HFH P+ NIY
Sbjct: 67 SPPPSPEVWAESR--------SPGTISQASAPRTAGTPRTSL--PHFHHPETTRPDSNIY 116
Query: 784 RKPPIYKQHGKT 819
+KPPIYKQ T
Sbjct: 117 KKPPIYKQREST 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,247,632
Number of extensions: 1108792
Number of successful extensions: 5510
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5465
Number of HSP's successfully gapped: 6
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864887.1| PREDICTED: similar to actin-binding LIM protein... 367 e-102
Alignment gi|XP_864906.1| PREDICTED: similar to actin-binding LIM protein... 342 4e-94
Alignment gi|XP_535022.2| PREDICTED: similar to actin-binding LIM protein... 335 3e-92
Alignment gi|XP_864927.1| PREDICTED: similar to actin-binding LIM protein... 329 2e-90
Alignment gi|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein... 200 1e-51
Alignment gi|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein... 177 1e-44
Alignment gi|XP_543258.2| PREDICTED: similar to Dematin (Erythrocyte memb... 98 1e-20
>ref|XP_864887.1| PREDICTED: similar to actin-binding LIM protein 1 isoform a isoform
3 [Canis familiaris].
Length = 778
Score = 367 bits (942), Expect = e-102
Identities = 183/234 (78%), Positives = 186/234 (79%), Gaps = 35/234 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 417
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSI+SP YSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHF 477
Query: 754 HR-----------------------------------PDQGINIYRKPPIYKQH 810
HR PDQGINIYRKPPIYKQH
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQH 531
>ref|XP_864906.1| PREDICTED: similar to actin-binding LIM protein 1 isoform s isoform
4 [Canis familiaris].
Length = 427
Score = 342 bits (876), Expect = 4e-94
Identities = 165/180 (91%), Positives = 167/180 (92%)
Frame = +1
Query: 271 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRXXXXXXXXXXHTIYAKV 450
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSR HTIYAKV
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRPGSSIPGSPGHTIYAKV 60
Query: 451 DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSA 630
DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPTPSA
Sbjct: 61 DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSA 120
Query: 631 EGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH 810
EGYQD RDR IHRSTSQGSI+SP YSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH
Sbjct: 121 EGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQH 180
>ref|XP_535022.2| PREDICTED: similar to actin-binding LIM protein 1 isoform 2 [Canis
familiaris].
Length = 846
Score = 335 bits (860), Expect = 3e-92
Identities = 167/212 (78%), Positives = 171/212 (80%), Gaps = 28/212 (13%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 363
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 364 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 489
PTRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 358 FFYPKSLVRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 417
Query: 490 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 669
PKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPTPSAEGYQD RDR IHR
Sbjct: 418 PKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDSRDRVIHR 477
Query: 670 STSQGSINSPGYSRHSYTPTTSRSPQHFHRPD 765
STSQGSI+SP YSRHSYTPTTSRSPQHFHRP+
Sbjct: 478 STSQGSISSPVYSRHSYTPTTSRSPQHFHRPE 509
>ref|XP_864927.1| PREDICTED: similar to actin-binding LIM protein 1 isoform 5 [Canis
familiaris].
Length = 862
Score = 329 bits (844), Expect = 2e-90
Identities = 167/228 (73%), Positives = 171/228 (75%), Gaps = 44/228 (19%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 363
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 364 ----------------------------------PTRTSSESIYSRXXXXXXXXXXHTIY 441
PTRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLVRRTGRSPSLQLLSPPCLVNFNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 442 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPT 621
AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPT
Sbjct: 418 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPT 477
Query: 622 PSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD 765
PSAEGYQD RDR IHRSTSQGSI+SP YSRHSYTPTTSRSPQHFHRP+
Sbjct: 478 PSAEGYQDSRDRVIHRSTSQGSISSPVYSRHSYTPTTSRSPQHFHRPE 525
>ref|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein 3 (Actin-binding
LIM protein family member 3) (abLIM3) [Canis
familiaris].
Length = 688
Score = 200 bits (509), Expect = 1e-51
Identities = 112/233 (48%), Positives = 138/233 (59%), Gaps = 33/233 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 228 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 286
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 287 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 345
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 346 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 403
Query: 754 HR--PDQG-------------------------------INIYRKPPIYKQHG 813
+R P+ G NIYRKPPIYK+HG
Sbjct: 404 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHG 456
>ref|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein 2 (Actin-binding LIM
protein family member 2) (abLIM2) [Canis familiaris].
Length = 858
Score = 177 bits (449), Expect = 1e-44
Identities = 104/255 (40%), Positives = 136/255 (53%), Gaps = 52/255 (20%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TR+SSESI
Sbjct: 438 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRSSSESII 497
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYS------ 555
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S
Sbjct: 498 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKSKAIYNIDRPDMISYSPYISHSAAGR 557
Query: 556 -----SGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSIN--------- 693
DD+ +Q SP + + + S Y H S G+++
Sbjct: 558 QSCHEGDQDDRSYKQCRTSSPSS-TGSVSLGRYTPTSRSPQHYSRPAGTVSVGTSSCLSL 616
Query: 694 ----SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI--N 777
SP RH Y P T ++P+HFH PD G+ N
Sbjct: 617 SQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPCTYQQAPRHFHVPDTGVKDN 676
Query: 778 IYRKPPIYKQHGKTR 822
IYRKPPIYKQH R
Sbjct: 677 IYRKPPIYKQHAVRR 691
>ref|XP_543258.2| PREDICTED: similar to Dematin (Erythrocyte membrane protein band
4.9) [Canis familiaris].
Length = 401
Score = 98.2 bits (243), Expect = 1e-20
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Frame = +1
Query: 433 TIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SP 603
+I AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP
Sbjct: 25 SIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSP 84
Query: 604 RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGI 774
++ SP PS E + + R S G+I+ R + TP TS HFH P+
Sbjct: 85 KSTSPPPSPEVWAESR--------SPGTISQASAPRTTGTPRTSL--PHFHHPETTRPDS 134
Query: 775 NIYRKPPIYKQHGKT 819
NIY+KPPIYKQ T
Sbjct: 135 NIYKKPPIYKQREST 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,796,101
Number of extensions: 1133846
Number of successful extensions: 5470
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5437
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus m... 366 e-101
Alignment gi|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musc... 328 4e-90
Alignment gi|NP_001096648.1| actin-binding LIM protein 1 isoform 3 [Mus m... 285 4e-77
Alignment gi|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus m... 200 1e-51
Alignment gi|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus]. 200 1e-51
Alignment gi|NP_941051.2| actin-binding LIM protein 3 [Mus musculus]. 200 1e-51
Alignment gi|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus m... 197 1e-50
Alignment gi|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musc... 197 1e-50
Alignment gi|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus m... 186 2e-47
Alignment gi|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus m... 176 2e-44
>ref|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus musculus].
Length = 701
Score = 366 bits (939), Expect = e-101
Identities = 183/234 (78%), Positives = 186/234 (79%), Gaps = 35/234 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 281
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGY+DK
Sbjct: 282 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDK 341
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 342 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 401
Query: 754 HR-----------------------------------PDQGINIYRKPPIYKQH 810
HR PDQGINIYRKPPIYKQH
Sbjct: 402 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQH 455
>ref|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musculus].
Length = 861
Score = 328 bits (841), Expect = 4e-90
Identities = 167/228 (73%), Positives = 171/228 (75%), Gaps = 44/228 (19%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIPRSSSD 357
Query: 367 -----------------------------------TRTSSESIYSRXXXXXXXXXXHTIY 441
TRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLIRRTGRSPALQLLSPPCLMNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 442 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPT 621
AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGY+DKQERQSLGESPRTLSPT
Sbjct: 418 AKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQERQSLGESPRTLSPT 477
Query: 622 PSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD 765
PSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHFHRP+
Sbjct: 478 PSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPE 525
>ref|NP_001096648.1| actin-binding LIM protein 1 isoform 3 [Mus musculus].
Length = 545
Score = 285 bits (729), Expect = 4e-77
Identities = 149/209 (71%), Positives = 152/209 (72%), Gaps = 44/209 (21%)
Frame = +1
Query: 271 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP---------------------------- 366
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIPRSSSDFFYPKSLIRRTGRSPALQL 60
Query: 367 ----------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKV 498
TRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKV
Sbjct: 61 LSPPCLMNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKV 120
Query: 499 KAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTS 678
KAIYDIERPDLITYEPFY+SGY+DKQERQSLGESPRTLSPTPSAEGYQD RDR IHRSTS
Sbjct: 121 KAIYDIERPDLITYEPFYTSGYEDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTS 180
Query: 679 QGSINSPGYSRHSYTPTTSRSPQHFHRPD 765
QGSINSP YSRHSYTPTTSRSPQHFHRP+
Sbjct: 181 QGSINSPVYSRHSYTPTTSRSPQHFHRPE 209
>ref|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus musculus].
Length = 617
Score = 200 bits (509), Expect = 1e-51
Identities = 118/269 (43%), Positives = 147/269 (54%), Gaps = 66/269 (24%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPG-------------YSR- 711
+RQS GESP+ LSPTP+ EG QD R R++S S S YSR
Sbjct: 343 GDRQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRP 401
Query: 712 -------------------------HSYTP-------------------------TTSRS 741
H Y P T ++
Sbjct: 402 AGTVSVGTSSCLSLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPPSSTYQQA 461
Query: 742 PQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
P+HFH PD G+ NIYRKPPIYKQH R
Sbjct: 462 PRHFHVPDTGVKDNIYRKPPIYKQHAARR 490
>ref|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 200 bits (509), Expect = 1e-51
Identities = 112/232 (48%), Positives = 136/232 (58%), Gaps = 32/232 (13%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSP--- 744
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHYY 398
Query: 745 -----------------------------QHFHRPDQGINIYRKPPIYKQHG 813
+HFH P NIYRKPPIYK+HG
Sbjct: 399 RSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHG 450
>ref|NP_941051.2| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 200 bits (509), Expect = 1e-51
Identities = 112/232 (48%), Positives = 136/232 (58%), Gaps = 32/232 (13%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEM 340
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSP--- 744
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHYY 398
Query: 745 -----------------------------QHFHRPDQGINIYRKPPIYKQHG 813
+HFH P NIYRKPPIYK+HG
Sbjct: 399 RSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHG 450
>ref|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus musculus].
Length = 573
Score = 197 bits (500), Expect = 1e-50
Identities = 108/224 (48%), Positives = 141/224 (62%), Gaps = 21/224 (9%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 574 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA---IHRSTSQGSINSPGYS 708
+RQS GE RT SP+ + G+ R+ R S+ ++P S
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPGSESGRSTPSLS 402
Query: 709 RHS----YTPTTSRSPQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
HS + T ++P+HFH PD G+ NIYRKPPIYKQH R
Sbjct: 403 VHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAARR 446
>ref|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musculus].
Length = 612
Score = 197 bits (500), Expect = 1e-50
Identities = 108/224 (48%), Positives = 141/224 (62%), Gaps = 21/224 (9%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 574 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA---IHRSTSQGSINSPGYS 708
+RQS GE RT SP+ + G+ R+ R S+ ++P S
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPGSESGRSTPSLS 402
Query: 709 RHS----YTPTTSRSPQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
HS + T ++P+HFH PD G+ NIYRKPPIYKQH R
Sbjct: 403 VHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAARR 446
>ref|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus musculus].
Length = 606
Score = 186 bits (472), Expect = 2e-47
Identities = 111/257 (43%), Positives = 143/257 (55%), Gaps = 54/257 (21%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIY+I+RPD+I+Y P+ S +
Sbjct: 285 SVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYIS--HSAV 342
Query: 574 QERQSLGESP---------RTLSPTPSAE---GYQDGRDRA-IHRSTSQGSIN------- 693
+RQS GE RT SP+ + G+ R+ H S G+++
Sbjct: 343 GDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPAGTVSVGTSSCL 402
Query: 694 ------SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 774
SP RH Y P T ++P+HFH PD G+
Sbjct: 403 SLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPDTGVK 462
Query: 775 -NIYRKPPIYKQHGKTR 822
NIYRKPPIYKQH R
Sbjct: 463 DNIYRKPPIYKQHAARR 479
>ref|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus musculus].
Length = 664
Score = 176 bits (447), Expect = 2e-44
Identities = 112/276 (40%), Positives = 144/276 (52%), Gaps = 73/276 (26%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEK------------ 357
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKMHSSVCSQPC 284
Query: 358 -------LRPTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDI 516
L+ TRTSSESI S IYAK+ +EILDY+DLAA+PK KAIY+I
Sbjct: 285 PGTLPCALQETRTSSESIVSVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNI 344
Query: 517 ERPDLITYEPFYSSGYDDKQERQSLGESP---------RTLSPTPSAE---GYQDGRDRA 660
+RPD+I+Y P+ S + +RQS GE RT SP+ + G+ R+
Sbjct: 345 DRPDMISYSPYIS--HSAVGDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRS 402
Query: 661 -IHRSTSQGSIN-------------SP-GYSRHSYTP----------------------- 726
H S G+++ SP RH Y P
Sbjct: 403 PQHYSRPAGTVSVGTSSCLSLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVHSDSRPP 462
Query: 727 --TTSRSPQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
T ++P+HFH PD G+ NIYRKPPIYKQH R
Sbjct: 463 SSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAARR 498
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,221,823
Number of extensions: 942129
Number of successful extensions: 4613
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4561
Number of HSP's successfully gapped: 19
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isofo... 395 e-110
Alignment gi|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isofo... 377 e-105
Alignment gi|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isofo... 362 e-100
Alignment gi|XP_003359426.1| PREDICTED: actin-binding LIM protein 1-like ... 271 4e-73
Alignment gi|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like ... 182 3e-46
Alignment gi|XP_001927210.2| PREDICTED: dematin isoform 2 [Sus scrofa]. 95 5e-20
>ref|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isoform 2 [Sus scrofa].
Length = 577
Score = 395 bits (1015), Expect = e-110
Identities = 188/199 (94%), Positives = 189/199 (94%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 130 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 189
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK
Sbjct: 190 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 249
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF
Sbjct: 250 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 309
Query: 754 HRPDQGINIYRKPPIYKQH 810
HRPDQGINIYRKPPIYKQH
Sbjct: 310 HRPDQGINIYRKPPIYKQH 328
>ref|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isoform 1 [Sus scrofa].
Length = 780
Score = 377 bits (969), Expect = e-105
Identities = 188/234 (80%), Positives = 189/234 (80%), Gaps = 35/234 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 417
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 477
Query: 754 HR-----------------------------------PDQGINIYRKPPIYKQH 810
HR PDQGINIYRKPPIYKQH
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQH 531
>ref|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isoform 3 [Sus scrofa].
Length = 731
Score = 362 bits (930), Expect = e-100
Identities = 188/262 (71%), Positives = 189/262 (72%), Gaps = 63/262 (24%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP--------- 366
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRP
Sbjct: 221 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIHRSPSD 280
Query: 367 -------------------TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 489
TRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 281 FFYPKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 340
Query: 490 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 669
PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR
Sbjct: 341 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 400
Query: 670 STSQGSINSPGYSRHSYTPTTSRSPQHFHR------------------------------ 759
STSQGSINSPGYSRHSYTPTTSRSPQHFHR
Sbjct: 401 STSQGSINSPGYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 460
Query: 760 -----PDQGINIYRKPPIYKQH 810
PDQGINIYRKPPIYKQH
Sbjct: 461 KHFHVPDQGINIYRKPPIYKQH 482
>ref|XP_003359426.1| PREDICTED: actin-binding LIM protein 1-like [Sus scrofa].
Length = 566
Score = 271 bits (693), Expect = 4e-73
Identities = 140/187 (74%), Positives = 142/187 (75%), Gaps = 35/187 (18%)
Frame = +1
Query: 355 KLRPTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI 534
+L+PTRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI
Sbjct: 131 RLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLI 190
Query: 535 TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH 714
TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH
Sbjct: 191 TYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRH 250
Query: 715 SYTPTTSRSPQHFHR-----------------------------------PDQGINIYRK 789
SYTPTTSRSPQHFHR PDQGINIYRK
Sbjct: 251 SYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRK 310
Query: 790 PPIYKQH 810
PPIYKQH
Sbjct: 311 PPIYKQH 317
>ref|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like [Sus scrofa].
Length = 669
Score = 182 bits (461), Expect = 3e-46
Identities = 110/257 (42%), Positives = 135/257 (52%), Gaps = 54/257 (21%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHP CA C RC +MF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 249 EAGEKHYHPLCALCVRCGRMFSEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 308
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ +EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 309 SVPASSASGSPSRVIYAKLGDEILDYRDLAALPKSKAIYDIDRPDMISYAPYVSHSVGD- 367
Query: 574 QERQSLGESP---------RTLSP-----------TPSAEGYQDGRDRAIHRSTSQGSIN 693
RQS E RT SP TP++ Q A S S
Sbjct: 368 --RQSCSEGDRDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTASVGTSSCL 425
Query: 694 S-------PGYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 774
S P R Y P T ++P+HFH PD G+
Sbjct: 426 SLPQHPSPPSVFRRHYVPYFRGSESGRSTPSLSVPPDSKPPPSTYQQAPRHFHVPDTGVK 485
Query: 775 -NIYRKPPIYKQHGKTR 822
NIYRKPPIYKQH R
Sbjct: 486 DNIYRKPPIYKQHAARR 502
>ref|XP_001927210.2| PREDICTED: dematin isoform 2 [Sus scrofa].
Length = 405
Score = 95.1 bits (235), Expect = 5e-20
Identities = 60/135 (44%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Frame = +1
Query: 433 TIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGE---SP 603
+I AK+DN++L YKDLAAIPK KAI DIERPDL+ YEP ++ + E E SP
Sbjct: 29 SIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSP 88
Query: 604 RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHFHRPD---QGI 774
++ SP PS E + + R S G+ R + TP TS HFH P+
Sbjct: 89 KSTSPPPSPEVWAESR--------SPGTFPQASAPRTTGTPRTSL--PHFHHPETTRPDS 138
Query: 775 NIYRKPPIYKQHGKT 819
NIY+KPPIYKQ T
Sbjct: 139 NIYKKPPIYKQREPT 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,601,212
Number of extensions: 710090
Number of successful extensions: 3450
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3407
Number of HSP's successfully gapped: 7
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo ... 367 e-102
Alignment gi|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sap... 367 e-102
Alignment gi|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo ... 352 2e-97
Alignment gi|NP_006711.3| actin-binding LIM protein 1 isoform s [Homo sap... 327 1e-89
Alignment gi|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo ... 201 1e-51
Alignment gi|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo ... 201 1e-51
Alignment gi|NP_055760.1| actin-binding LIM protein 3 [Homo sapiens]. 200 2e-51
Alignment gi|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo ... 193 2e-49
Alignment gi|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo ... 193 2e-49
Alignment gi|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo ... 185 5e-47
>ref|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo sapiens].
Length = 718
Score = 367 bits (943), Expect = e-102
Identities = 184/234 (78%), Positives = 186/234 (79%), Gaps = 35/234 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 297
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 298 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 357
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 358 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 417
Query: 754 HR-----------------------------------PDQGINIYRKPPIYKQH 810
HR PDQGINIYRKPPIYKQH
Sbjct: 418 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQH 471
>ref|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sapiens].
Length = 778
Score = 367 bits (943), Expect = e-102
Identities = 184/234 (78%), Positives = 186/234 (79%), Gaps = 35/234 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
SR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFY+SGYDDK
Sbjct: 358 SRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDK 417
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
QERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTPTTSRSPQHF
Sbjct: 418 QERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 477
Query: 754 HR-----------------------------------PDQGINIYRKPPIYKQH 810
HR PDQGINIYRKPPIYKQH
Sbjct: 478 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQH 531
>ref|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo sapiens].
Length = 746
Score = 352 bits (904), Expect = 2e-97
Identities = 184/262 (70%), Positives = 186/262 (70%), Gaps = 63/262 (24%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 363
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNIRRSSSD 297
Query: 364 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAI 489
PTRTSSESIYSR HTIYAKVDNEILDYKDLAAI
Sbjct: 298 FFYSKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAI 357
Query: 490 PKVKAIYDIERPDLITYEPFYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHR 669
PKVKAIYDIERPDLITYEPFY+SGYDDKQERQSLGESPRTLSPTPSAEGYQD RDR IHR
Sbjct: 358 PKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHR 417
Query: 670 STSQGSINSPGYSRHSYTPTTSRSPQHFHR------------------------------ 759
STSQGSINSP YSRHSYTPTTSRSPQHFHR
Sbjct: 418 STSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAP 477
Query: 760 -----PDQGINIYRKPPIYKQH 810
PDQGINIYRKPPIYKQH
Sbjct: 478 KHFHVPDQGINIYRKPPIYKQH 499
>ref|NP_006711.3| actin-binding LIM protein 1 isoform s [Homo sapiens].
Length = 455
Score = 327 bits (838), Expect = 1e-89
Identities = 166/208 (79%), Positives = 167/208 (80%), Gaps = 28/208 (13%)
Frame = +1
Query: 271 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR----------------------------P 366
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR P
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNIRRSSSDFFYSKSLIRRTGRSPSLQP 60
Query: 367 TRTSSESIYSRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP 546
TRTSSESIYSR HTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP
Sbjct: 61 TRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEP 120
Query: 547 FYSSGYDDKQERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 726
FY+SGYDDKQERQSLGESPRTLSPTPSAEGYQD RDR IHRSTSQGSINSP YSRHSYTP
Sbjct: 121 FYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTP 180
Query: 727 TTSRSPQHFHRPDQGINIYRKPPIYKQH 810
TTSRSPQHFHRPDQGINIYRKPPIYKQH
Sbjct: 181 TTSRSPQHFHRPDQGINIYRKPPIYKQH 208
>ref|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo sapiens].
Length = 470
Score = 201 bits (510), Expect = 1e-51
Identities = 105/183 (57%), Positives = 127/183 (69%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
RQS GESP+ LSPTP+ EG QD R R++S S S R YTP TSRSPQH+
Sbjct: 344 --RQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSTGSVSLGR--YTP-TSRSPQHY 397
Query: 754 HRP 762
RP
Sbjct: 398 SRP 400
>ref|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo sapiens].
Length = 531
Score = 201 bits (510), Expect = 1e-51
Identities = 105/183 (57%), Positives = 127/183 (69%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
RQS GESP+ LSPTP+ EG QD R R++S S S R YTP TSRSPQH+
Sbjct: 344 --RQSYGESPQLLSPTPT-EGDQDDRSYKQCRTSSPSSTGSVSLGR--YTP-TSRSPQHY 397
Query: 754 HRP 762
RP
Sbjct: 398 SRP 400
>ref|NP_055760.1| actin-binding LIM protein 3 [Homo sapiens].
Length = 683
Score = 200 bits (508), Expect = 2e-51
Identities = 112/233 (48%), Positives = 138/233 (59%), Gaps = 33/233 (14%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI- 281
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
I AKVDNEIL+YKDLAA+PKVK+IY+++RPDLI+YEP D+
Sbjct: 282 -SPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYMSDEM 340
Query: 574 QERQSLGESPRTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTPTTSRSPQHF 753
ER GES TLSP ++ + D R++S G I+SP YSR +PT SRSP H+
Sbjct: 341 LERCGYGESLGTLSPY--SQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHHY 398
Query: 754 HR--PDQG-------------------------------INIYRKPPIYKQHG 813
+R P+ G NIYRKPPIYK+HG
Sbjct: 399 YRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGDSNIYRKPPIYKRHG 451
>ref|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo sapiens].
Length = 572
Score = 193 bits (491), Expect = 2e-49
Identities = 110/227 (48%), Positives = 134/227 (59%), Gaps = 24/227 (10%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 574 QERQSLGESP---------RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 726
RQS GE RT SP+ S GR RS S PG TP
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPS-STGSVSLGRYTPTSRSPQHYS--RPGSESGRSTP 398
Query: 727 TTS-------------RSPQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
+ S ++P+HFH PD G+ NIYRKPPIY+QH R
Sbjct: 399 SLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDNIYRKPPIYRQHAARR 445
>ref|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo sapiens].
Length = 611
Score = 193 bits (491), Expect = 2e-49
Identities = 110/227 (48%), Positives = 134/227 (59%), Gaps = 24/227 (10%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 574 QERQSLGESP---------RTLSPTPSAEGYQDGRDRAIHRSTSQGSINSPGYSRHSYTP 726
RQS GE RT SP+ S GR RS S PG TP
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPS-STGSVSLGRYTPTSRSPQHYS--RPGSESGRSTP 398
Query: 727 TTS-------------RSPQHFHRPDQGI--NIYRKPPIYKQHGKTR 822
+ S ++P+HFH PD G+ NIYRKPPIY+QH R
Sbjct: 399 SLSVLSDSKPPPSTYQQAPRHFHVPDTGVKDNIYRKPPIYRQHAARR 445
>ref|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo sapiens].
Length = 645
Score = 185 bits (470), Expect = 5e-47
Identities = 111/257 (43%), Positives = 137/257 (53%), Gaps = 54/257 (21%)
Frame = +1
Query: 214 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 393
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 394 SRXXXXXXXXXXHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYSSGYDDK 573
S IYAK+ EILDY+DLAA+PK KAIYDI+RPD+I+Y P+ S D
Sbjct: 285 SVPASSTSGSPSRVIYAKLGGEILDYRDLAALPKSKAIYDIDRPDMISYSPYISHSAGD- 343
Query: 574 QERQSLGESP---------RTLSPTP----SAEGYQDGRDRAIHRSTSQGSIN------- 693
RQS GE RT SP+ S Y H S G+++
Sbjct: 344 --RQSYGEGDQDDRSYKQCRTSSPSSTGSVSLGRYTPTSRSPQHYSRPAGTVSVGTSSCL 401
Query: 694 ------SP-GYSRHSYTP-------------------------TTSRSPQHFHRPDQGI- 774
SP RH Y P T ++P+HFH PD G+
Sbjct: 402 SLSQHPSPTSVFRHHYIPYFRGSESGRSTPSLSVLSDSKPPPSTYQQAPRHFHVPDTGVK 461
Query: 775 -NIYRKPPIYKQHGKTR 822
NIYRKPPIY+QH R
Sbjct: 462 DNIYRKPPIYRQHAARR 478
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,116,130
Number of extensions: 1122114
Number of successful extensions: 5336
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5278
Number of HSP's successfully gapped: 18
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007590
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 406 e-111
>Sscrofa_Chr14
|| Length = 153851969
Score = 406 bits (205), Expect = e-111
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 763 gatcaagggatcaacatttaccgaaaaccacccatctacaaacagcatggtaaaacccgc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135900303 gatcaagggatcaacatttaccgaaaaccacccatctacaaacagcatggtaaaacccgc 135900244
Query: 823 tttcctctgcgtagcttttaagtagcaacatcagctgaactctttgctgccctctgaaag 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135900243 tttcctctgcgtagcttttaagtagcaacatcagctgaactctttgctgccctctgaaag 135900184
Query: 883 gcttgtctgctaatgcttttgagactcaaactgggatgtccagcatcttatgcctttaag 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135900183 gcttgtctgctaatgcttttgagactcaaactgggatgtccagcatcttatgcctttaag 135900124
Query: 943 gtctcctgagatacaaatattgtga 967
|||||||||||||||||||||||||
Sbjct: 135900123 gtctcctgagatacaaatattgtga 135900099
Score = 406 bits (205), Expect = e-111
Identities = 214/217 (98%)
Strand = Plus / Minus
Query: 1 gtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 135972470 gtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgcatc 135972411
Query: 61 ggagaggggccagcgttctcggggagggcagagagccccgggctgaggtccggtgtccac 120
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972410 ggagaggggccagtgtcctcggggagggcagagagccccgggctgaggtccggtgtccac 135972351
Query: 121 aagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972350 aagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacagcca 135972291
Query: 181 gggacagaggtagaagaaaagaagccctggcgtaagg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 135972290 gggacagaggtagaagaaaagaagccctggcgtaagg 135972254
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 442 gcaaaagtcgacaatgaaatcctggattacaaggatttagcagctattcccaaggtcaag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135917823 gcaaaagtcgacaatgaaatcctggattacaaggatttagcagctattcccaaggtcaag 135917764
Query: 502 gcgatttacgacatcgaacgtccagatcttattacctatgagccattctactcttcaggc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135917763 gcgatttacgacatcgaacgtccagatcttattacctatgagccattctactcttcaggc 135917704
Query: 562 tatgatgacaaacaggagaggcagagcctgggagag 597
||||||||||||||||||||||||||||||||||||
Sbjct: 135917703 tatgatgacaaacaggagaggcagagcctgggagag 135917668
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 634 ggctaccaggacggtcgggatcgggcgatccaccggtccaccagccagggctccatcaac 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135913541 ggctaccaggacggtcgggatcgggcgatccaccggtccaccagccagggctccatcaac 135913482
Query: 694 tcccccgggtacagccggcacagctacactccgaccacgtctcgctctccccagcacttc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135913481 tcccccgggtacagccggcacagctacactccgaccacgtctcgctctccccagcacttc 135913422
Query: 754 cacagacccg 763
||||||||||
Sbjct: 135913421 cacagacccg 135913412
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 215 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135937398 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 135937339
Query: 275 tcacagaaggagaggaaatgtatcttcaaggt 306
||||||||||||||||||||||||||||||||
Sbjct: 135937338 tcacagaaggagaggaaatgtatcttcaaggt 135937307
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 363 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918907 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 135918848
Query: 423 cccaggtcataccatctatg 442
||||||||||||||||||||
Sbjct: 135918847 cccaggtcataccatctatg 135918828
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 303 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135932670 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 135932611
Query: 363 g 363
|
Sbjct: 135932610 g 135932610
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 596 agtctccaaggactttgtccccgactccatcagcagaag 634
|||||||||||||||||||||||||||||||||||||||
Sbjct: 135915670 agtctccaaggactttgtccccgactccatcagcagaag 135915632
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,447,009
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 8
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)