Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033637.1| propionyl-CoA carboxylase beta chain, mitoch... 1013 0.0
Alignment gi|NP_001192262.1| acetyl-CoA carboxylase 2 [Bos taurus]. 83 1e-15
Alignment gi|NP_776649.1| acetyl-CoA carboxylase 1 [Bos taurus]. 76 1e-13
>ref|NP_001033637.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Bos
taurus].
Length = 539
Score = 1013 bits (2620), Expect = 0.0
Identities = 499/520 (95%), Positives = 514/520 (98%)
Frame = +2
Query: 614 SLHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSF 793
SL RSLCTQPVSVNERIENKRQAALLGGGQRRID+QHKRGKLTARERISLLLDPGSF
Sbjct: 20 SLRGAGRSLCTQPVSVNERIENKRQAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSF 79
Query: 794 IESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ 973
+ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ
Sbjct: 80 VESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ 139
Query: 974 KICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGP 1153
KICKIMDQA+TVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV+ASGVIPQISLIMGP
Sbjct: 140 KICKIMDQALTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGP 199
Query: 1154 CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR 1333
CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR
Sbjct: 200 CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR 259
Query: 1334 AFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDI 1513
AF+NDVDALCNLREFFNYLPLSNQDPAP+ ECHDPSDRLVPELDT+VPLEST+AY+MVDI
Sbjct: 260 AFENDVDALCNLREFFNYLPLSNQDPAPVLECHDPSDRLVPELDTIVPLESTKAYNMVDI 319
Query: 1514 IYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR 1693
I+++VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR
Sbjct: 320 IHAVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR 379
Query: 1694 FCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAY 1873
FCD+FNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+TVITRKAYGGAY
Sbjct: 380 FCDSFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAY 439
Query: 1874 DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR 2053
DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR
Sbjct: 440 DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR 499
Query: 2054 GFVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
GFVDDIIQPSSTRARICCDL VLASKKVQRPWRKHANIPL
Sbjct: 500 GFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>ref|NP_001192262.1| acetyl-CoA carboxylase 2 [Bos taurus].
Length = 2431
Score = 83.2 bits (204), Expect = 1e-15
Identities = 93/398 (23%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Frame = +2
Query: 905 RLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGY 1084
+ +Y+ QD+T SL+ H CK +++ G + D G GVE+L G
Sbjct: 1833 KYLYLTPQDYTRIS-SLNSVH----CKHVEED---GESRYVITDIIGKEEGLGVENLRGS 1884
Query: 1085 ADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTN 1264
I I IS++ G Y L V++ S++ +TG + V
Sbjct: 1885 GMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVEN-SHIILTGATALNKVLG 1943
Query: 1265 EDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDP 1438
DV + +LGG + +GV+H +D + +C + E+ +Y+P N+ P P+ DP
Sbjct: 1944 RDVYTSNNQLGGVQI-MHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDP 2002
Query: 1439 SDRLVPELDTVVP-----LESTRAYDMVDIIY--SIVDERDFFEIMPNYAKNIIVGFARM 1597
DR + + P L + R + + + D+ F EIM +A+ ++ G AR+
Sbjct: 2003 IDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARL 2062
Query: 1598 NGRTVGIVGNQPKVASGCLDI---------------------NSSVKGARFVRFCDAFNI 1714
G VG++ + + + +S+ K A+ ++ + +
Sbjct: 2063 GGIPVGVIAAETRTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKL 2122
Query: 1715 PLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVIT--RKAYGGAYDVM-- 1882
PL+ F + GF G Y +++ GA ++ + P + I + GG++ VM
Sbjct: 2123 PLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDT 2182
Query: 1883 SSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
S LC + YA + +V+ +G VEI ++ + V+
Sbjct: 2183 SINPLCIEM-YADRESRASVLEPEGTVEIKYQKKDLVK 2219
>ref|NP_776649.1| acetyl-CoA carboxylase 1 [Bos taurus].
Length = 2346
Score = 76.3 bits (186), Expect = 1e-13
Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1793 GAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1851
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1852 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSTVCDDFEGVFTVLHWLSYMPKSVYSSV 1910
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1911 PLLNSKDPIDRVIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E + P + I +A G
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRG 2090
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2091 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2135
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 92,764,844
Number of extensions: 2554050
Number of successful extensions: 7638
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7627
Number of HSP's successfully gapped: 3
Length of query: 793
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 683
Effective length of database: 14,041,694
Effective search space: 9590477002
Effective search space used: 9590477002
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534271.2| PREDICTED: similar to Propionyl-CoA carboxylase... 995 0.0
Alignment gi|XP_864718.1| PREDICTED: similar to Propionyl-CoA carboxylase... 945 0.0
Alignment gi|XP_864704.1| PREDICTED: similar to Propionyl-CoA carboxylase... 945 0.0
Alignment gi|XP_864736.1| PREDICTED: similar to Propionyl-CoA carboxylase... 936 0.0
Alignment gi|XP_864683.1| PREDICTED: similar to Propionyl-CoA carboxylase... 731 0.0
Alignment gi|XP_535268.2| PREDICTED: similar to methylcrotonoyl-Coenzyme ... 232 1e-60
Alignment gi|XP_867594.1| PREDICTED: similar to acetyl-Coenzyme A carboxy... 76 2e-13
Alignment gi|XP_548250.2| PREDICTED: similar to acetyl-Coenzyme A carboxy... 76 2e-13
Alignment gi|XP_867576.1| PREDICTED: similar to acetyl-Coenzyme A carboxy... 76 2e-13
Alignment gi|XP_867566.1| PREDICTED: similar to acetyl-Coenzyme A carboxy... 76 2e-13
>ref|XP_534271.2| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 1 [Canis familiaris].
Length = 554
Score = 995 bits (2573), Expect = 0.0
Identities = 492/519 (94%), Positives = 509/519 (98%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VR LC+QPVSV+ERIENKR AAL+GGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 36 LRAAVRGLCSQPVSVHERIENKRSAALVGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 95
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAA+KNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK
Sbjct: 96 ESDMFVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 155
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV ASGVIPQISLIMGPC
Sbjct: 156 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVIPQISLIMGPC 215
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA
Sbjct: 216 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 275
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLREFFNYLPLSNQDPAPI ECHDPSDR+VPELDT+VPLEST+AY+MVDII
Sbjct: 276 FENDVDALCNLREFFNYLPLSNQDPAPICECHDPSDRMVPELDTIVPLESTKAYNMVDII 335
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 1696
+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF
Sbjct: 336 HSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 395
Query: 1697 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYD 1876
CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+TVITRKAYGGAYD
Sbjct: 396 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYD 455
Query: 1877 VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG 2056
VMSSKHLCGD NYAWPTAEIAVMGAKGAVEIIFKGH++V AAQAEYIEKFANPFPAAVRG
Sbjct: 456 VMSSKHLCGDINYAWPTAEIAVMGAKGAVEIIFKGHKDVAAAQAEYIEKFANPFPAAVRG 515
Query: 2057 FVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
FVDDIIQPSSTRARIC DL VLASKKVQRPWRKHANIPL
Sbjct: 516 FVDDIIQPSSTRARICRDLDVLASKKVQRPWRKHANIPL 554
>ref|XP_864718.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 4 [Canis familiaris].
Length = 520
Score = 945 bits (2442), Expect = 0.0
Identities = 473/519 (91%), Positives = 490/519 (94%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VR LC+QPVSV+ERIENKR AAL+GGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRGLCSQPVSVHERIENKRSAALVGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAA+KNKFPGDSVVTGRGRINGRLVYVFSQ
Sbjct: 81 ESDMFVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQ---------------- 124
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
IMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV ASGVIPQISLIMGPC
Sbjct: 125 ---IMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVIPQISLIMGPC 181
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA
Sbjct: 182 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 241
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLREFFNYLPLSNQDPAPI ECHDPSDR+VPELDT+VPLEST+AY+MVDII
Sbjct: 242 FENDVDALCNLREFFNYLPLSNQDPAPICECHDPSDRMVPELDTIVPLESTKAYNMVDII 301
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 1696
+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF
Sbjct: 302 HSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 361
Query: 1697 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYD 1876
CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+TVITRKAYGGAYD
Sbjct: 362 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYD 421
Query: 1877 VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG 2056
VMSSKHLCGD NYAWPTAEIAVMGAKGAVEIIFKGH++V AAQAEYIEKFANPFPAAVRG
Sbjct: 422 VMSSKHLCGDINYAWPTAEIAVMGAKGAVEIIFKGHKDVAAAQAEYIEKFANPFPAAVRG 481
Query: 2057 FVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
FVDDIIQPSSTRARIC DL VLASKKVQRPWRKHANIPL
Sbjct: 482 FVDDIIQPSSTRARICRDLDVLASKKVQRPWRKHANIPL 520
>ref|XP_864704.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 3 [Canis familiaris].
Length = 551
Score = 945 bits (2442), Expect = 0.0
Identities = 476/532 (89%), Positives = 496/532 (93%), Gaps = 13/532 (2%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VR LC+QPVSV+ERIENKR AAL+GGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRGLCSQPVSVHERIENKRSAALVGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAA+KNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK
Sbjct: 81 ESDMFVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 140
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV ASGVIPQISLIMGPC
Sbjct: 141 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVIPQISLIMGPC 200
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA
Sbjct: 201 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 260
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLREFFNYLPLSNQDPAPI ECHDPSDR+VPELDT+VPLEST+AY+MVDII
Sbjct: 261 FENDVDALCNLREFFNYLPLSNQDPAPICECHDPSDRMVPELDTIVPLESTKAYNMVDII 320
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVAS-------------GCLD 1657
+S+VDER+FFEIMPNYAKNIIVG R +T + P + S GCLD
Sbjct: 321 HSVVDEREFFEIMPNYAKNIIVGL-RPGPKTGTKPLSHPGIPSSSFLSAWTISLILGCLD 379
Query: 1658 INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKI 1837
INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+
Sbjct: 380 INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKV 439
Query: 1838 TVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYI 2017
TVITRKAYGGAYDVMSSKHLCGD NYAWPTAEIAVMGAKGAVEIIFKGH++V AAQAEYI
Sbjct: 440 TVITRKAYGGAYDVMSSKHLCGDINYAWPTAEIAVMGAKGAVEIIFKGHKDVAAAQAEYI 499
Query: 2018 EKFANPFPAAVRGFVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
EKFANPFPAAVRGFVDDIIQPSSTRARIC DL VLASKKVQRPWRKHANIPL
Sbjct: 500 EKFANPFPAAVRGFVDDIIQPSSTRARICRDLDVLASKKVQRPWRKHANIPL 551
>ref|XP_864736.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 5 [Canis familiaris].
Length = 516
Score = 936 bits (2420), Expect = 0.0
Identities = 469/519 (90%), Positives = 486/519 (93%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VR LC+QPVSV+ERIENKR AAL+GGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRGLCSQPVSVHERIENKRSAALVGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAA+KNK DFTVFGGSLSGAHAQK
Sbjct: 81 ESDMFVEHRCADFGMAAEKNK-----------------------DFTVFGGSLSGAHAQK 117
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV ASGVIPQISLIMGPC
Sbjct: 118 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVIPQISLIMGPC 177
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA
Sbjct: 178 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 237
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLREFFNYLPLSNQDPAPI ECHDPSDR+VPELDT+VPLEST+AY+MVDII
Sbjct: 238 FENDVDALCNLREFFNYLPLSNQDPAPICECHDPSDRMVPELDTIVPLESTKAYNMVDII 297
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 1696
+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF
Sbjct: 298 HSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 357
Query: 1697 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYD 1876
CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+TVITRKAYGGAYD
Sbjct: 358 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYD 417
Query: 1877 VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG 2056
VMSSKHLCGD NYAWPTAEIAVMGAKGAVEIIFKGH++V AAQAEYIEKFANPFPAAVRG
Sbjct: 418 VMSSKHLCGDINYAWPTAEIAVMGAKGAVEIIFKGHKDVAAAQAEYIEKFANPFPAAVRG 477
Query: 2057 FVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
FVDDIIQPSSTRARIC DL VLASKKVQRPWRKHANIPL
Sbjct: 478 FVDDIIQPSSTRARICRDLDVLASKKVQRPWRKHANIPL 516
>ref|XP_864683.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 2 [Canis familiaris].
Length = 405
Score = 731 bits (1886), Expect = 0.0
Identities = 360/380 (94%), Positives = 374/380 (98%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VR LC+QPVSV+ERIENKR AAL+GGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRGLCSQPVSVHERIENKRSAALVGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAA+KNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK
Sbjct: 81 ESDMFVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 140
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV ASGVIPQISLIMGPC
Sbjct: 141 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVIPQISLIMGPC 200
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA
Sbjct: 201 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 260
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLREFFNYLPLSNQDPAPI ECHDPSDR+VPELDT+VPLEST+AY+MVDII
Sbjct: 261 FENDVDALCNLREFFNYLPLSNQDPAPICECHDPSDRMVPELDTIVPLESTKAYNMVDII 320
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 1696
+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF
Sbjct: 321 HSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 380
Query: 1697 CDAFNIPLITFVDVPGFLPG 1756
CDAFNIPLITFVDVPGFLPG
Sbjct: 381 CDAFNIPLITFVDVPGFLPG 400
>ref|XP_535268.2| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
(predicted) [Canis familiaris].
Length = 563
Score = 232 bits (591), Expect = 1e-60
Identities = 163/516 (31%), Positives = 247/516 (47%), Gaps = 23/516 (4%)
Frame = +2
Query: 665 ERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGS-FIESDMFVEHRCADFGM 841
+++ + + LGG Q+ + RGKL ARER+ L+DPGS F+E F ++
Sbjct: 54 DQLHERAEKIRLGGSQKARERHISRGKLLARERVDNLIDPGSPFLELSQFAGYKLYV--- 110
Query: 842 AADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPV 1021
+ P S++TG GR++G + + D T+ GG+ +K + + AM P
Sbjct: 111 ---NEEVPAGSIITGIGRVSGVECMIIANDATIKGGTYYPVTVKKHLRAQEIAMQNRLPC 167
Query: 1022 IGLNDSGGARIQEGVESLAG---YADIFLRN-VSASGVIPQISLIMGPCAGGAVYSPALT 1189
I L DSGGA + + + IF + +S I QI+++MG C G Y PA+
Sbjct: 168 IYLVDSGGANLPFQADIFPDRDHFGRIFYNQAIMSSQNIAQIAVVMGSCTAGGAYVPAMA 227
Query: 1190 DFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDALCNL 1369
D +V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV +D AL
Sbjct: 228 DENVIVRKQGTIFLAGPPLVKAATKEEVSAEDLGGADLHCRKSGVTDYYALDDYHALHLT 287
Query: 1370 REFFNYLPLSNQDPAPIRECHDPSDRLVP--ELDTVVPLESTRAYDMVDIIYSIVDERDF 1543
R+ L + I DP L P EL +V R +D+ ++I IVD F
Sbjct: 288 RKIVKNLNYQKKLDVTIEPSEDP---LFPADELYGIVGTNLKRQFDVREVIARIVDGSRF 344
Query: 1544 FEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLI 1723
E Y ++ GFAR+ G +GI+GN +G L S+ KGA F++ C NIPL+
Sbjct: 345 SEFKALYGDTLVTGFARIFGYPIGIIGN-----NGVLFSESAKKGAHFIQVCCQRNIPLL 399
Query: 1724 TFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCG 1903
++ GF+ G E GI + GAK++ A A A VPKITVI +YG M +
Sbjct: 400 FLQNITGFMVGRDYEAEGIAKDGAKMVAAVACANVPKITVIIGGSYGAGNYGMCGRAYSP 459
Query: 1904 DTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYI----------------EKFANP 2035
Y WP A I+VMG + A ++ EN A + + + E+ NP
Sbjct: 460 RFLYLWPNARISVMGGEQAASVLATVAENQRALKGKQLSSADEAALKEPIIKKFEEEGNP 519
Query: 2036 FPAAVRGFVDDIIQPSSTRARICCDLXVLASKKVQR 2143
+ ++ R + D II P TR + L + +Q+
Sbjct: 520 YYSSARLWDDGIIDPVDTRLVLGLSLSAALNAPIQK 555
>ref|XP_867594.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
isoform 10 [Canis familiaris].
Length = 2323
Score = 75.9 bits (185), Expect = 2e-13
Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1770 GAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1828
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P + +
Sbjct: 1829 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSIVCDDFEGVFTVLHWLSYMPKNVRSLV 1887
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1888 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1947
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1948 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2007
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ + E + P + I +A G
Sbjct: 2008 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDSLRECSQPVLVYIPPQAELRG 2067
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2068 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2112
>ref|XP_548250.2| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
isoform 1 [Canis familiaris].
Length = 2323
Score = 75.9 bits (185), Expect = 2e-13
Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1770 GAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1828
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P + +
Sbjct: 1829 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSIVCDDFEGVFTVLHWLSYMPKNVRSLV 1887
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1888 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1947
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1948 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2007
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ + E + P + I +A G
Sbjct: 2008 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDSLRECSQPVLVYIPPQAELRG 2067
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2068 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2112
>ref|XP_867576.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
isoform 9 [Canis familiaris].
Length = 2323
Score = 75.9 bits (185), Expect = 2e-13
Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1770 GAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1828
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P + +
Sbjct: 1829 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSIVCDDFEGVFTVLHWLSYMPKNVRSLV 1887
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1888 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1947
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1948 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2007
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ + E + P + I +A G
Sbjct: 2008 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDSLRECSQPVLVYIPPQAELRG 2067
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2068 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2112
>ref|XP_867566.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
isoform 8 [Canis familiaris].
Length = 2333
Score = 75.9 bits (185), Expect = 2e-13
Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1780 GAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1838
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P + +
Sbjct: 1839 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSIVCDDFEGVFTVLHWLSYMPKNVRSLV 1897
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1898 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1957
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1958 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2017
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ + E + P + I +A G
Sbjct: 2018 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDSLRECSQPVLVYIPPQAELRG 2077
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2078 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2122
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 96,517,725
Number of extensions: 2623958
Number of successful extensions: 8170
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8117
Number of HSP's successfully gapped: 15
Length of query: 793
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 682
Effective length of database: 15,174,208
Effective search space: 10348809856
Effective search space used: 10348809856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080111.1| propionyl-CoA carboxylase beta chain, mitochond... 983 0.0
Alignment gi|NP_084302.1| methylcrotonoyl-CoA carboxylase beta chain, mit... 227 3e-59
Alignment gi|NP_598665.2| acetyl-Coenzyme A carboxylase beta [Mus musculu... 84 5e-16
Alignment gi|NP_579938.2| acetyl-CoA carboxylase 1 [Mus musculus]. 77 8e-14
Alignment gi|XP_003086942.1| PREDICTED: acetyl-CoA carboxylase 1-like, pa... 70 7e-12
>ref|NP_080111.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Mus
musculus].
Length = 541
Score = 983 bits (2541), Expect = 0.0
Identities = 481/514 (93%), Positives = 507/514 (98%)
Frame = +2
Query: 632 RSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFIESDMF 811
R LC+QPVSV ERI+NKR AALLGGGQRRID+QHKRGKLTARERISLLLDPGSF+ESDMF
Sbjct: 28 RGLCSQPVSVKERIDNKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFMESDMF 87
Query: 812 VEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIM 991
VEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIM
Sbjct: 88 VEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIM 147
Query: 992 DQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAV 1171
DQA+TVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV+ASGVIPQISLIMGPCAGGAV
Sbjct: 148 DQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAV 207
Query: 1172 YSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDV 1351
YSPALTDFTFMVKDTSYLFITGP+VVKSVTNEDVTQE+LGGA+THTT+SGVAHRAFDNDV
Sbjct: 208 YSPALTDFTFMVKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDV 267
Query: 1352 DALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDIIYSIVD 1531
DALCNLREFFN+LPLS+QDPAPIRECHDPSDRLVPELDTVVPLES++AY+M+DII++++D
Sbjct: 268 DALCNLREFFNFLPLSSQDPAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVID 327
Query: 1532 ERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFN 1711
ER+FFEIMP+YAKNI+VGFARMNGRTVGIVGNQP VASGCLDINSSVKGARFVRFCDAFN
Sbjct: 328 EREFFEIMPSYAKNIVVGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFN 387
Query: 1712 IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSK 1891
IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSK
Sbjct: 388 IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSK 447
Query: 1892 HLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDI 2071
HL GDTNYAWPTAEIAVMGAKGAVEIIFKGH++VEAAQAEY+EKFANPFPAAVRGFVDDI
Sbjct: 448 HLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVEAAQAEYVEKFANPFPAAVRGFVDDI 507
Query: 2072 IQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
IQPSSTRARICCDL VLASKKV RPWRKHANIPL
Sbjct: 508 IQPSSTRARICCDLEVLASKKVHRPWRKHANIPL 541
>ref|NP_084302.1| methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Mus
musculus].
Length = 563
Score = 227 bits (579), Expect = 3e-59
Identities = 166/515 (32%), Positives = 248/515 (48%), Gaps = 23/515 (4%)
Frame = +2
Query: 668 RIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGS-FIESDMFVEHRCADFGMA 844
++ + Q LGG ++ RGKL R+RI L+DPGS F+E F A + +
Sbjct: 55 QLHERAQYVRLGGSEKARARHTSRGKLLPRDRIDNLIDPGSPFLEFSQF-----AGYQLY 109
Query: 845 ADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVI 1024
D+ + P ++TG GR++G + + D TV GG+ +K + + A+ P I
Sbjct: 110 GDE-EVPAGGIITGIGRVSGVECMIVANDATVKGGTYYPVTVKKHVRAQEIALQNRLPCI 168
Query: 1025 GLNDSGGARIQEGVESLAG---YADIFLRN-VSASGVIPQISLIMGPCAGGAVYSPALTD 1192
L DSGGA + ++ + IF + +S I QI+++MG C G Y PA+ D
Sbjct: 169 YLVDSGGANLPRQADTFPDRDHFGRIFYNQAIMSSKNITQIAVVMGSCTAGGAYVPAMAD 228
Query: 1193 FTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDALCNLR 1372
+V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV +D AL R
Sbjct: 229 ENIIVQKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVTDHYALDDHHALHLTR 288
Query: 1373 EFFNYLPLSNQDPAPIRECHDPSDRLVP--ELDTVVPLESTRAYDMVDIIYSIVDERDFF 1546
+ L + I +P L P EL +V R++D+ ++I IVD F
Sbjct: 289 KVVRSLNYQKKMDVTIEPSEEP---LFPADELYGIVGANLKRSFDVREVIARIVDGSRFN 345
Query: 1547 EIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLIT 1726
E Y ++ GFAR+ G VGI+GN +G L S+ KGA FV+ C NIPL+
Sbjct: 346 EFKALYGDTLVTGFARIFGYPVGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLF 400
Query: 1727 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGD 1906
++ GF+ G E GI + GAK++ A A A VPKITVI +YG M +
Sbjct: 401 LQNITGFMVGRDYEAEGIAKDGAKMVAAVACAKVPKITVIIGGSYGAGNYGMCGRAYSPR 460
Query: 1907 TNYAWPTAEIAVMGAKGAVEIIF------KGHENVEAAQAE----------YIEKFANPF 2038
Y WP A I+VMG + A ++ K E + + AE E+ NP+
Sbjct: 461 FLYMWPNARISVMGGEQAATVLATVARDQKAREGKQFSSAEEAALKEPIIKRFEEEGNPY 520
Query: 2039 PAAVRGFVDDIIQPSSTRARICCDLXVLASKKVQR 2143
++ R + D II P TR + L + +QR
Sbjct: 521 YSSARLWDDGIIDPVDTRLVLGLSLSAALNAPIQR 555
>ref|NP_598665.2| acetyl-Coenzyme A carboxylase beta [Mus musculus].
Length = 2448
Score = 84.0 bits (206), Expect = 5e-16
Identities = 92/398 (23%), Positives = 168/398 (42%), Gaps = 34/398 (8%)
Frame = +2
Query: 905 RLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGY 1084
R +Y+ QD+T S + H + I + ++ V VIG + + G G +AG
Sbjct: 1850 RYLYLTPQDYTQIS-SQNSVHCKHI-EDEGESRYVIVDVIGKDANLGVENLRGSGMIAGE 1907
Query: 1085 ADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTN 1264
A + IS++ G Y L V++ S++ +TG + V
Sbjct: 1908 ASLAYEKTVT------ISMVTCRALGIGAYLVRLGQRVIQVEN-SHIILTGAGALNKVLG 1960
Query: 1265 EDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDP 1438
+V + +LGG + T +GV+H +D + +C + E+ +++P N+ P PI DP
Sbjct: 1961 REVYTSNNQLGGVQIMHT-NGVSHVTVPDDFEGVCTILEWLSFIPKDNRSPVPITTPSDP 2019
Query: 1439 SDRLVPELDTVVPLE-----STRAYDMVDIIY--SIVDERDFFEIMPNYAKNIIVGFARM 1597
DR + T P + + R + + + D F EIM +A+ ++ G AR+
Sbjct: 2020 IDREIEFTPTKAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRARL 2079
Query: 1598 NGRTVGIVGNQPKVASGCLDI---------------------NSSVKGARFVRFCDAFNI 1714
G VG++ + + + +S+ K A+ +R + +
Sbjct: 2080 GGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQVIRDFNKERL 2139
Query: 1715 PLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVI--TRKAYGGAYDVMSS 1888
PL+ F + GF G Y +++ GA ++ P + I + GG++ V+ S
Sbjct: 2140 PLMIFANWRGFSGGMKDMYEQMLKFGAYIVDGLRLYEQPILIYIPPCAELRGGSWVVLDS 2199
Query: 1889 --KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
LC + YA + V+ +G VEI F+ + V+
Sbjct: 2200 TINPLCIEM-YADKESRGGVLEPEGTVEIKFRKKDLVK 2236
>ref|NP_579938.2| acetyl-CoA carboxylase 1 [Mus musculus].
Length = 2345
Score = 76.6 bits (187), Expect = 8e-14
Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A + ISL+ G Y L T V++ S+L +TG
Sbjct: 1792 GAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1850
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1851 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHSTVCDDFEGVFTVLHWLSYMPKSVHSSV 1909
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1910 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1969
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1970 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2029
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E + P + I +A G
Sbjct: 2030 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRG 2089
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2090 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRKKDLVK 2134
>ref|XP_003086942.1| PREDICTED: acetyl-CoA carboxylase 1-like, partial [Mus musculus].
Length = 580
Score = 70.1 bits (170), Expect = 7e-12
Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A + ISL+ G Y L T V++ S+L +
Sbjct: 47 GAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILKET 105
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V ++ + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 106 GALNKVLGRELYTSNNQLGGIQIMHN-NGVTHSTVCDDFEGVFTVLHWLSYMPKSVHSSV 164
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 165 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 224
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 225 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 284
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E + P + I +A G
Sbjct: 285 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRG 344
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 345 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRKKDLVK 389
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 80,431,798
Number of extensions: 2175796
Number of successful extensions: 6470
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6448
Number of HSP's successfully gapped: 5
Length of query: 793
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 684
Effective length of database: 12,343,635
Effective search space: 8443046340
Effective search space used: 8443046340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999066.1| propionyl-CoA carboxylase beta chain, mitochond... 1041 0.0
Alignment gi|NP_001193328.1| acetyl-CoA carboxylase 2 [Sus scrofa]. 87 4e-17
Alignment gi|NP_001107741.1| acetyl-CoA carboxylase 1 [Sus scrofa]. 76 7e-14
>ref|NP_999066.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Sus
scrofa].
Length = 539
Score = 1041 bits (2693), Expect = 0.0
Identities = 519/520 (99%), Positives = 519/520 (99%)
Frame = +2
Query: 614 SLHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSF 793
SLHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSF
Sbjct: 20 SLHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSF 79
Query: 794 IESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ 973
IESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ
Sbjct: 80 IESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQ 139
Query: 974 KICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGP 1153
KICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGP
Sbjct: 140 KICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGP 199
Query: 1154 CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR 1333
CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR
Sbjct: 200 CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR 259
Query: 1334 AFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDI 1513
AFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDI
Sbjct: 260 AFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDI 319
Query: 1514 IYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR 1693
IYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR
Sbjct: 320 IYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVR 379
Query: 1694 FCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAY 1873
FCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAY
Sbjct: 380 FCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAY 439
Query: 1874 DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR 2053
DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR
Sbjct: 440 DVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVR 499
Query: 2054 GFVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
GFVDDIIQPSSTRARICCDL VLASKKVQRPWRKHANIPL
Sbjct: 500 GFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>ref|NP_001193328.1| acetyl-CoA carboxylase 2 [Sus scrofa].
Length = 2454
Score = 87.0 bits (214), Expect = 4e-17
Identities = 97/398 (24%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Frame = +2
Query: 905 RLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGY 1084
+ +Y+ QD+T SL+ H CK +++ G + D G GVE+L G
Sbjct: 1856 KYLYLTPQDYTRIS-SLNSVH----CKHIEEE---GESRYIITDIIGKEEGLGVENLKGS 1907
Query: 1085 ADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTN 1264
I I ISL+ G Y L V++ S++ +TG + V
Sbjct: 1908 GMIAGETSLDYDEIVTISLVTCRALGIGAYLVRLGQRVIQVEN-SHIILTGAMALNKVLG 1966
Query: 1265 EDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDP 1438
+V + +LGG + + +GV+H +D + +C + E+ +Y+P N P PI DP
Sbjct: 1967 REVYTSNNQLGGVQIMHS-NGVSHVTVPDDFEGVCTILEWLSYMPKDNHSPVPIITPTDP 2025
Query: 1439 SDRLVPELDTVVP-----LESTRAYDMVDIIY--SIVDERDFFEIMPNYAKNIIVGFARM 1597
DR + + P L + R + + + D+ F EIM +A+ ++ G AR+
Sbjct: 2026 VDREIEFQPSRSPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMAPWAQTVVTGRARL 2085
Query: 1598 NGRTVGIVGNQPKVASGCLDI---------------------NSSVKGARFVRFCDAFNI 1714
G VG++ + + + +S+ K A+ +R +
Sbjct: 2086 GGIPVGVIAVETRTVELAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIRDFSREKL 2145
Query: 1715 PLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVIT--RKAYGGAYDVM-- 1882
PLI F + GF G Y +++ GA ++ F + P + I + GG++ VM
Sbjct: 2146 PLIIFANWRGFSGGMKDMYDQVLKFGAYIVDGFRQYKQPILIYIPPYGELRGGSWAVMDT 2205
Query: 1883 SSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
S LC + YA + +++ +G VEI F+ + V+
Sbjct: 2206 SINPLCIEI-YADKESRASILEPEGTVEIKFRKKDLVK 2242
>ref|NP_001107741.1| acetyl-CoA carboxylase 1 [Sus scrofa].
Length = 2346
Score = 76.3 bits (186), Expect = 7e-14
Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1793 GAENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1851
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1852 GALNKVLGREVYTSTSQLGGIQIMHN-NGVTHSTVCDDFEGVFTVLHWLSYMPKSVCSSV 1910
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-----STRAY--DMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + RA+ + D F EIM +A+
Sbjct: 1911 PLLNSKDPIDRVIEFVPTKAPYDPRWMLAGRAHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E + P + I +A G
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQMLKFGAYIVDGLRECSQPVMVYIPPQAELRG 2090
Query: 1865 GAYDV----MSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V ++ +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2091 GSWVVIDPTINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 59,730,695
Number of extensions: 1638102
Number of successful extensions: 5034
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5025
Number of HSP's successfully gapped: 3
Length of query: 793
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 686
Effective length of database: 8,679,953
Effective search space: 5954447758
Effective search space used: 5954447758
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000523.2| propionyl-CoA carboxylase beta chain, mitochond... 1007 0.0
Alignment gi|NP_001171485.1| propionyl-CoA carboxylase beta chain, mitoch... 995 0.0
Alignment gi|NP_071415.1| methylcrotonoyl-CoA carboxylase beta chain, mit... 229 1e-59
Alignment gi|NP_001084.3| acetyl-CoA carboxylase 2 [Homo sapiens]. 84 8e-16
Alignment gi|NP_942136.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapien... 77 7e-14
Alignment gi|NP_942135.1| acetyl-CoA carboxylase 1 isoform 4 [Homo sapien... 77 7e-14
Alignment gi|NP_942134.1| acetyl-CoA carboxylase 1 isoform 3 [Homo sapien... 77 7e-14
Alignment gi|NP_942133.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapien... 77 7e-14
Alignment gi|NP_942131.1| acetyl-CoA carboxylase 1 isoform 1 [Homo sapien... 77 7e-14
>ref|NP_000523.2| propionyl-CoA carboxylase beta chain, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 539
Score = 1007 bits (2604), Expect = 0.0
Identities = 495/519 (95%), Positives = 513/519 (98%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VRSLC+Q SVNERIENKR+ ALLGGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 976
ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK
Sbjct: 81 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK 140
Query: 977 ICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPC 1156
ICKIMDQA+TVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNV+ASGVIPQISLIMGPC
Sbjct: 141 ICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPC 200
Query: 1157 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRA 1336
AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGA+THTTMSGVAHRA
Sbjct: 201 AGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRA 260
Query: 1337 FDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDII 1516
F+NDVDALCNLR+FFNYLPLS+QDPAP+RECHDPSDRLVPELDT+VPLEST+AY+MVDII
Sbjct: 261 FENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDII 320
Query: 1517 YSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 1696
+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF
Sbjct: 321 HSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRF 380
Query: 1697 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYD 1876
CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPK+TVITRKAYGGAYD
Sbjct: 381 CDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYD 440
Query: 1877 VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG 2056
VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG
Sbjct: 441 VMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRG 500
Query: 2057 FVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
FVDDIIQPSSTRARICCDL VLASKKVQRPWRKHANIPL
Sbjct: 501 FVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>ref|NP_001171485.1| propionyl-CoA carboxylase beta chain, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 559
Score = 995 bits (2573), Expect = 0.0
Identities = 495/539 (91%), Positives = 513/539 (95%), Gaps = 20/539 (3%)
Frame = +2
Query: 617 LHAGVRSLCTQPVSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFI 796
L A VRSLC+Q SVNERIENKR+ ALLGGGQRRID+QHKRGKLTARERISLLLDPGSF+
Sbjct: 21 LRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFV 80
Query: 797 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQ---------------- 928
ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQ
Sbjct: 81 ESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQQIIGWAQWLPLVISAL 140
Query: 929 ----DFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIF 1096
DFTVFGGSLSGAHAQKICKIMDQA+TVGAPVIGLNDSGGARIQEGVESLAGYADIF
Sbjct: 141 WEAEDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIF 200
Query: 1097 LRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVT 1276
LRNV+ASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVT
Sbjct: 201 LRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVT 260
Query: 1277 QEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVP 1456
QEELGGA+THTTMSGVAHRAF+NDVDALCNLR+FFNYLPLS+QDPAP+RECHDPSDRLVP
Sbjct: 261 QEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVP 320
Query: 1457 ELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 1636
ELDT+VPLEST+AY+MVDII+S+VDER+FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK
Sbjct: 321 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 380
Query: 1637 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFA 1816
VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFA
Sbjct: 381 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFA 440
Query: 1817 EATVPKITVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
EATVPK+TVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE
Sbjct: 441 EATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 500
Query: 1997 AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLXVLASKKVQRPWRKHANIPL 2173
AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDL VLASKKVQRPWRKHANIPL
Sbjct: 501 AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 559
>ref|NP_071415.1| methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Homo
sapiens].
Length = 563
Score = 229 bits (583), Expect = 1e-59
Identities = 168/502 (33%), Positives = 248/502 (49%), Gaps = 24/502 (4%)
Frame = +2
Query: 659 VNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGS-FIESDMFVEHRCADF 835
++ER+E+ + LGGG++ RGKL RERI L+DPGS F+E F ++ D
Sbjct: 56 LHERVEHIK----LGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYD- 110
Query: 836 GMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGA 1015
+ PG ++TG GR++G + + D TV GG+ +K + + AM
Sbjct: 111 -----NEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRL 165
Query: 1016 PVIGLNDSGGARIQEGVESLAGYADIFLRN-----VSASGVIPQISLIMGPCAGGAVYSP 1180
P I L DSGGA + + D F R + +S I QI+++MG C G Y P
Sbjct: 166 PCIYLVDSGGAYLPRQADVFPD-RDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVP 224
Query: 1181 ALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDAL 1360
A+ D +V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 225 AMADENIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHAL 284
Query: 1361 CNLREFFNYLPLSNQDPAPIRECHDPSDRLVP--ELDTVVPLESTRAYDMVDIIYSIVDE 1534
R+ L + I +P L P EL +V R++D+ ++I IVD
Sbjct: 285 HLTRKVVRNLNYQKKLDVTIEPSEEP---LFPADELYGIVGANLKRSFDVREVIARIVDG 341
Query: 1535 RDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNI 1714
F E Y ++ GFAR+ G VGIVGN +G L S+ KG FV+ C NI
Sbjct: 342 SRFTEFKAFYGDTLVTGFARIFGYPVGIVGN-----NGVLFSESAKKGTHFVQLCCQRNI 396
Query: 1715 PLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKH 1894
PL+ ++ GF+ G E GI + GAK++ A A A VPKIT+I +YG M +
Sbjct: 397 PLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRA 456
Query: 1895 LCGDTNYAWPTAEIAVMGAKGAVEIIF------KGHENVEAAQAE-------YIEKF--- 2026
Y WP A I+VMG + A ++ + E + + A+ I+KF
Sbjct: 457 YSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAALKEPIIKKFEEE 516
Query: 2027 ANPFPAAVRGFVDDIIQPSSTR 2092
NP+ ++ R + D II P+ TR
Sbjct: 517 GNPYYSSARVWDDGIIDPADTR 538
>ref|NP_001084.3| acetyl-CoA carboxylase 2 [Homo sapiens].
Length = 2458
Score = 83.6 bits (205), Expect = 8e-16
Identities = 97/417 (23%), Positives = 175/417 (41%), Gaps = 40/417 (9%)
Frame = +2
Query: 905 RLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGY 1084
+ +Y+ QD+T SL+ H + I + + + +IG +D GVE+L G
Sbjct: 1860 KYLYLTPQDYTRIS-SLNSVHCKHIEEGGESRYMI-TDIIGKDDG------LGVENLRGS 1911
Query: 1085 ADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTN 1264
I + A I ISL+ G Y L V++ S++ +TG + V
Sbjct: 1912 GMIAGESSLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVEN-SHIILTGASALNKVLG 1970
Query: 1265 EDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDP 1438
+V + +LGG + +GV+H +D + + + E+ +Y+P N P PI DP
Sbjct: 1971 REVYTSNNQLGGVQI-MHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPIITPTDP 2029
Query: 1439 SDRLVPELDTVVPLE-----STRAYDMVDIIY--SIVDERDFFEIMPNYAKNIIVGFARM 1597
DR + L + P + + R + + + D F EIM +A+ ++ G AR+
Sbjct: 2030 IDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRARL 2089
Query: 1598 NGRTVGIVGNQPKVASGCLDI---------------------NSSVKGARFVRFCDAFNI 1714
G VG++ + + + +S+ K A+ V+ + +
Sbjct: 2090 GGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAVKDFNREKL 2149
Query: 1715 PLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YGGAYDVMSS 1888
PL+ F + GF G Y +++ GA ++ + P + I A GG++ V+ +
Sbjct: 2150 PLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDA 2209
Query: 1889 --KHLCGDTNYAWPTAEIAVMGAKGAVEIIF------KGHENVEAAQAEYIEKFANP 2035
LC + YA + V+ +G VEI F K ++ A + +E+ P
Sbjct: 2210 TINPLCIEM-YADKESRGGVLEPEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLGEP 2265
>ref|NP_942136.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapiens].
Length = 2346
Score = 77.0 bits (188), Expect = 7e-14
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1793 GPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1851
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1852 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1910
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1911 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E P + I +A G
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2090
Query: 1865 GAYDVMSS----KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V+ S +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2091 GSWVVIDSSINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2135
>ref|NP_942135.1| acetyl-CoA carboxylase 1 isoform 4 [Homo sapiens].
Length = 2268
Score = 77.0 bits (188), Expect = 7e-14
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1715 GPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1773
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1774 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1832
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1833 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1892
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1893 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 1952
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E P + I +A G
Sbjct: 1953 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2012
Query: 1865 GAYDVMSS----KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V+ S +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2013 GSWVVIDSSINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2057
>ref|NP_942134.1| acetyl-CoA carboxylase 1 isoform 3 [Homo sapiens].
Length = 2288
Score = 77.0 bits (188), Expect = 7e-14
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1735 GPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1793
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1794 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1852
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1853 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1912
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1913 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 1972
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E P + I +A G
Sbjct: 1973 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2032
Query: 1865 GAYDVMSS----KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V+ S +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2033 GSWVVIDSSINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2077
>ref|NP_942133.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapiens].
Length = 2346
Score = 77.0 bits (188), Expect = 7e-14
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1793 GPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1851
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1852 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1910
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1911 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E P + I +A G
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2090
Query: 1865 GAYDVMSS----KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V+ S +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2091 GSWVVIDSSINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2135
>ref|NP_942131.1| acetyl-CoA carboxylase 1 isoform 1 [Homo sapiens].
Length = 2383
Score = 77.0 bits (188), Expect = 7e-14
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Frame = +2
Query: 1061 GVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 1240
G E+L G I + A I ISL+ G Y L T V++ S+L +TG
Sbjct: 1830 GPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVEN-SHLILTGA 1888
Query: 1241 DVVKSVTNEDV--TQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPA 1414
+ V +V + +LGG + +GV H +D + + + + +Y+P S
Sbjct: 1889 GALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1947
Query: 1415 PIRECHDPSDRLVPELDTVVPLE-------STRAYDMVDIIYSIVDERDFFEIMPNYAKN 1573
P+ DP DR++ + T P + + D F EIM +A+
Sbjct: 1948 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 2007
Query: 1574 IIVGFARMNGRTVGIVGNQPKVASGCLDINSS--------VKGARFVRFCDA-------- 1705
++VG AR+ G VG+V + + + + + ++ A V F D+
Sbjct: 2008 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2067
Query: 1706 --FN---IPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKA--YG 1864
FN +PL+ F + GF G Y +++ GA ++ E P + I +A G
Sbjct: 2068 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2127
Query: 1865 GAYDVMSS----KHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE 1996
G++ V+ S +H+ YA + +V+ +G VEI F+ + V+
Sbjct: 2128 GSWVVIDSSINPRHM---EMYADRESRGSVLEPEGTVEIKFRRKDLVK 2172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 94,874,211
Number of extensions: 2588869
Number of successful extensions: 7812
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7791
Number of HSP's successfully gapped: 9
Length of query: 793
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 682
Effective length of database: 14,638,160
Effective search space: 9983225120
Effective search space used: 9983225120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007597
(2380 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1429 0.0
Sscrofa_Chr06 127 3e-26
>Sscrofa_Chr13
|| Length = 218635234
Score = 1429 bits (721), Expect = 0.0
Identities = 737/741 (99%), Gaps = 1/741 (0%)
Strand = Plus / Plus
Query: 1 aatttgacttattaggtctgggattgagtctgagaatatgaaagtttgcatttcc-atcg 59
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 84586935 aatttgacttattaggtctgggattgagtctgagaatttggaagtttgcatttcccatcg 84586994
Query: 60 tgctttttccagtgatccttaagccatgtgctcagtaagtattatgtaaaatatctgtgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84586995 tgctttttccagtgatccttaagccatgtgctcagtaagtattatgtaaaatatctgtgt 84587054
Query: 120 ttgaaatctggttcaaccacatctttagtcctggctggattaaatcattctatctcttta 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587055 ttgaaatctggttcaaccacatctttagtcctggctggattaaatcattctatctctttg 84587114
Query: 180 tgctccatttgtctcagctgcgaaatcaggacaataagctaatacaggtaaatgcttaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587115 tgctccatttgtctcagctgcgaaatcaggacaataagctaatacaggtaaatgcttaaa 84587174
Query: 240 gcaacacttggtattcaacaaatgattaactctattcattttctggaggcggtgggataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587175 gcaacacttggtattcaacaaatgattaactctattcattttctggaggcggtgggataa 84587234
Query: 300 caaaaccaggggtctaggtagccagagaaaagcaagggcaaagtctcttttctgcccagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587235 caaaaccaggggtctaggtagccagagaaaagcaagggcaaagtctcttttctgcccagc 84587294
Query: 360 cttgcggttgaccaggcccgcgcttctgacgatgacacaccctagcgcagtctcaggacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587295 cttgcggttgaccaggcccgcgcttctgacgatgacacaccctagcgcagtctcaggacc 84587354
Query: 420 cacgctctttggcctccagcctttttccaaattgcgctccgcagtccagcccacaggcta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587355 cacgctctttggcctccagcctttttccaaattgcgctccgcagtccagcccacaggcta 84587414
Query: 480 cttacttcccgccgatgctgcgcaggcgcaaatgccgcagcgcccacacttgacgcacat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587415 cttacttcccgccgatgctgcgcaggcgcaaatgccgcagcgcccacacttgacgcacat 84587474
Query: 540 gcgccggtccagcagaaatggcggcggcagtgcgcgtgacggcggcccgagccaggctcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587475 gcgccggtccagcagaaatggcggcggcagtgcgcgtgacggcggcccgagccaggctcc 84587534
Query: 600 gcgttgtagtgagaagtctccacgccggggtgcgcagtctgtgcacccagcctgtctcag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587535 gcgttgtagtgagaagtctccacgccggggtgcgcagtctgtgcacccagcctgtctcag 84587594
Query: 660 ttaacgagcgcatcgagaacaagcgtcaggccgcactgctgggaggaggccagcgccgca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84587595 ttaacgagcgcatcgagaacaagcgtcaggccgcactgctgggaggaggccagcgccgca 84587654
Query: 720 ttgattcgcagcataagcgag 740
|||||||||||||||||||||
Sbjct: 84587655 ttgattcgcagcataagcgag 84587675
Score = 440 bits (222), Expect = e-120
Identities = 260/274 (94%)
Strand = Plus / Plus
Query: 2053 agggtttgtggatgacatcatccagccttcctctacccgggcccgaatctgctgtgacct 2112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84684318 agggtttgtggatgacatcatccagccttcctctacccgggcccgaatctgctgtgacct 84684377
Query: 2113 gnatgtcttggccagcaagaaggtacagcgcccttggaggaaacatgcaaatattccctt 2172
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84684378 ggatgtcttggccagcaagaaggtacagcgcccttggaggaaacatgcaaatattccctt 84684437
Query: 2173 ggtaatgaatcaagagaagataaaccaggagctgattattgccgagccagttgcacctgt 2232
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84684438 gtaaatgaatcaagagaagataaaccaggagctgattattgccgagccagttgcacctgt 84684497
Query: 2233 ccatatgccttgtgcagtcatgaaacctgggaatctaagttttaataaatactttgaatg 2292
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 84684498 ccatatgccttgtgcagtcatgaaacctgggaatctaagttttaataataacttgaaatg 84684557
Query: 2293 ggccagtttnnatagntctagaaggatttcattt 2326
| | ||||| || ||||||||||||||||||
Sbjct: 84684558 gccaagtttaataagttctagaaggatttcattt 84684591
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1316 tcaggcgtggcccacagagcttttgacaatgatgtcgatgccctatgtaatctccgggag 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84631778 tcaggcgtggcccacagagcttttgacaatgatgtcgatgccctatgtaatctccgggag 84631837
Query: 1376 ttcttcaactacctgcctctcagcaatcaggacccggctcccatccgtgagtgccatgat 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84631838 ttcttcaactacctgcctctcagcaatcaggacccggctcccatccgtgagtgccatgat 84631897
Query: 1436 cccag 1440
|||||
Sbjct: 84631898 cccag 84631902
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1523 attgttgacgagcgagacttttttgagatcatgcccaattatgccaagaacatcattgtt 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84659834 attgttgacgagcgagacttttttgagatcatgcccaattatgccaagaacatcattgtt 84659893
Query: 1583 ggttttgcaagaatgaatgggaggactgttggaattgttggcaaccagcctaaggtggct 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84659894 ggttttgcaagaatgaatgggaggactgttggaattgttggcaaccagcctaaggtggct 84659953
Query: 1643 tcagg 1647
|||||
Sbjct: 84659954 tcagg 84659958
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 740 ggaaagctaacggccagagaacggatcagtctcttgctggaccccggcagttttattgag 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84591505 ggaaagctaacggccagagaacggatcagtctcttgctggaccccggcagttttattgag 84591564
Query: 800 agtgacatgtttgtggaacacagatgtgcagattttggaatggctgctgacaagaataag 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84591565 agtgacatgtttgtggaacacagatgtgcagattttggaatggctgctgacaagaataag 84591624
Score = 230 bits (116), Expect = 3e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 984 agatcatggaccaagccatgacagttggggctccggtgattggactgaatgactcagggg 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84598830 agatcatggaccaagccatgacagttggggctccggtgattggactgaatgactcagggg 84598889
Query: 1044 gagccaggatccaagaaggagtagagtctttggctggctatgcagacatctttctg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84598890 gagccaggatccaagaaggagtagagtctttggctggctatgcagacatctttctg 84598945
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1099 gaggaatgtctcggcatctggagtcatccctcagatttctctgatcatgggcccgtgtgc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84605558 gaggaatgtctcggcatctggagtcatccctcagatttctctgatcatgggcccgtgtgc 84605617
Query: 1159 tggtggggctgtctactccccggccctgacagacttcacattcatggtaaagg 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84605618 tggtggggctgtctactccccggccctgacagacttcacattcatggtaaagg 84605670
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1209 aggacacctcctacttattcatcactggtcctgatgttgtgaagtctgtcaccaacgagg 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84626454 aggacacctcctacttattcatcactggtcctgatgttgtgaagtctgtcaccaacgagg 84626513
Query: 1269 acgtgacccaggaggagctcgggggtgccaggacccacaccaccatgtcagg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84626514 acgtgacccaggaggagctcgggggtgccaggacccacaccaccatgtcagg 84626565
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1645 aggatgcttggatattaattcatctgtgaaaggggctcgttttgtccgattctgtgatgc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84681271 aggatgcttggatattaattcatctgtgaaaggggctcgttttgtccgattctgtgatgc 84681330
Query: 1705 atttaacattccactcatcactttcgttgatgtccctggctttctgcctgg 1755
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84681331 atttaacattccactcatcactttcgttgatgtccctggctttctgcctgg 84681381
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1754 ggcacagcgcaggaatacgggggcatcatccggcatggcgccaagctgctctatgcgttc 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84681597 ggcacagcgcaggaatacgggggcatcatccggcatggcgccaagctgctctatgcgttc 84681656
Query: 1814 gccgaggcaactgtgcccaaaatcacagtcatcaccaggaagg 1856
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84681657 gccgaggcaactgtgcccaaaatcacagtcatcaccaggaagg 84681699
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1953 agggtgccgtggagatcatcttcaaagggcacgagaatgtggaggccgcgcaggcagagt 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84683086 agggtgccgtggagatcatcttcaaagggcacgagaatgtggaggccgcgcaggcagagt 84683145
Query: 2013 acattgagaagtttgccaacccttttcctgcagctgtgagagg 2055
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84683146 acattgagaagtttgccaacccttttcctgcagctgtgagagg 84683188
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1854 aggcctatggtggagcctatgatgtcatgagctccaagcacctttgtggtgacaccaact 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84682083 aggcctatggtggagcctatgatgtcatgagctccaagcacctttgtggtgacaccaact 84682142
Query: 1914 acgcctggcccacagcagagattgccgtcatgggagcaaagg 1955
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84682143 acgcctggcccacagcagagattgccgtcatgggagcaaagg 84682184
Score = 167 bits (84), Expect = 4e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1439 agtgaccgtctggttcctgagcttgacacagttgtccctttggaatcgactagagcctat 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84633726 agtgaccgtctggttcctgagcttgacacagttgtccctttggaatcgactagagcctat 84633785
Query: 1499 gacatggtggacataatatactct 1522
||||||||||||||||||||||||
Sbjct: 84633786 gacatggtggacataatatactct 84633809
Score = 143 bits (72), Expect = 5e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 858 agtttcctggagacagcgttgtcactggacggggccgaatcaatggaagattggtttatg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84593123 agtttcctggagacagcgttgtcactggacggggccgaatcaatggaagattggtttatg 84593182
Query: 918 tcttcagtcagg 929
||||||||||||
Sbjct: 84593183 tcttcagtcagg 84593194
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 927 aggattttaccgtttttggaggcagtctgtctggagcccatgcccaaaagatctgcaag 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84596885 aggattttaccgtttttggaggcagtctgtctggagcccatgcccaaaagatctgcaag 84596943
>Sscrofa_Chr06
|| Length = 157765593
Score = 127 bits (64), Expect = 3e-26
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1272 tgacccaggaggagctcgggggtgccaggacccacaccaccatgtcaggcgtggcccaca 1331
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 43042994 tgacccaggaggagctcgggggtgccaggacccacaccaccatgtccggcgtggcccaaa 43043053
Query: 1332 gagcttttgacaatga 1347
||||| ||||||||||
Sbjct: 43043054 gagctcttgacaatga 43043069
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 65,466,758
Number of extensions: 337
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 16
Length of query: 2380
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2358
Effective length of database: 2,808,408,574
Effective search space: 6622227417492
Effective search space used: 6622227417492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)