Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus]. 538 e-153
Alignment gi|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor ... 55 8e-08
>ref|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 514
Score = 538 bits (1387), Expect = e-153
Identities = 271/301 (90%), Positives = 280/301 (93%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VGNDES+PEDV KV+QIKKVRLL+DEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNLDDLTADTLTNLKVSQIKKVRLLVDEAILKCDAE 120
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFE+LREIGNLLHPSVPIS+DEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFESLREIGNLLHPSVPISDDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQ+ALRTL SRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 1020 F 1022
F
Sbjct: 301 F 301
>ref|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 518
Score = 55.5 bits (132), Expect = 8e-08
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Frame = +3
Query: 486 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 659
+LE + + + N HP VP+ ++ A +V + GD + H+++ +D
Sbjct: 158 QLEEQFYLRALRLPNQTHPDVPVGDESQA--RVLHVVGDKPAFSFQPRGHLEIAEKLDII 215
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMT 275
Query: 840 -SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI 995
+ ++Y + D + +E+ L T+E +A D + DL I
Sbjct: 276 PNAKPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPI 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,014,991
Number of extensions: 1085928
Number of successful extensions: 5317
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5246
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase iso... 533 e-151
Alignment gi|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase iso... 533 e-151
Alignment gi|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase iso... 528 e-150
Alignment gi|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase iso... 512 e-145
Alignment gi|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase iso... 511 e-145
Alignment gi|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase iso... 500 e-141
Alignment gi|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase iso... 414 e-116
Alignment gi|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase iso... 238 9e-63
Alignment gi|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mi... 52 1e-06
>ref|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase isoform 2 [Canis
familiaris].
Length = 536
Score = 533 bits (1373), Expect = e-151
Identities = 270/301 (89%), Positives = 278/301 (92%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 1020 F 1022
F
Sbjct: 300 F 300
>ref|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 513
Score = 533 bits (1373), Expect = e-151
Identities = 270/301 (89%), Positives = 278/301 (92%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 1020 F 1022
F
Sbjct: 300 F 300
>ref|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 516
Score = 528 bits (1359), Expect = e-150
Identities = 270/304 (88%), Positives = 278/304 (91%), Gaps = 3/304 (0%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXK---VAQIKKVRLLIDEAILKC 470
S+TIGEKMKKKE VG DES+PED K V+QIKKVRLLIDEAILKC
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLALLKELEVSQIKKVRLLIDEAILKC 119
Query: 471 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMV 650
DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMV
Sbjct: 120 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMV 179
Query: 651 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 830
DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV
Sbjct: 180 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 239
Query: 831 AQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGL 1010
AQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 240 AQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 299
Query: 1011 PPAF 1022
F
Sbjct: 300 STCF 303
>ref|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase isoform 6 [Canis
familiaris].
Length = 532
Score = 512 bits (1318), Expect = e-145
Identities = 266/320 (83%), Positives = 274/320 (85%), Gaps = 19/320 (5%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 840 SQFDEELYKVIGKG-------------------SEKSDDNSYEEKYLIATSEQPIAALHR 962
SQFDEELYKV G EKSDDNSY+EKYLIATSEQPIAALHR
Sbjct: 240 SQFDEELYKVSSLGITGPHSESLGWHFLPNNLSFEKSDDNSYDEKYLIATSEQPIAALHR 299
Query: 963 DEWLRPEDLQI*FAGLPPAF 1022
DEWLRPEDL I +AGL F
Sbjct: 300 DEWLRPEDLPIKYAGLSTCF 319
>ref|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase isoform 7 [Canis
familiaris].
Length = 505
Score = 511 bits (1315), Expect = e-145
Identities = 262/301 (87%), Positives = 270/301 (89%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELY KSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 240 SQFDEELY--------KSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 291
Query: 1020 F 1022
F
Sbjct: 292 F 292
>ref|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase isoform 4 [Canis
familiaris].
Length = 504
Score = 500 bits (1287), Expect = e-141
Identities = 258/301 (85%), Positives = 267/301 (88%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKV ++ EEKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 240 SQFDEELYKV---------TSTTEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 290
Query: 1020 F 1022
F
Sbjct: 291 F 291
>ref|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase isoform 5 [Canis
familiaris].
Length = 465
Score = 414 bits (1063), Expect = e-116
Identities = 223/301 (74%), Positives = 230/301 (76%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDE------------------------------- 148
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 149 -----------------GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 191
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 192 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 251
Query: 1020 F 1022
F
Sbjct: 252 F 252
>ref|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase isoform 1 [Canis
familiaris].
Length = 339
Score = 238 bits (606), Expect(2) = 9e-63
Identities = 119/126 (94%), Positives = 121/126 (96%)
Frame = +3
Query: 645 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 824
MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ
Sbjct: 1 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 60
Query: 825 EVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FA 1004
EVAQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +A
Sbjct: 61 EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 120
Query: 1005 GLPPAF 1022
GL F
Sbjct: 121 GLSTCF 126
Score = 21.9 bits (45), Expect(2) = 9e-63
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1010 STCFRREVG 1036
STCFR+EVG
Sbjct: 123 STCFRQEVG 131
>ref|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mitochondrial
precursor (Serine--tRNA ligase) (SerRSmt) [Canis
familiaris].
Length = 518
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 3/173 (1%)
Frame = +3
Query: 486 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRK--KYSHVDLVVMVDGF 659
+L+ + + ++ N HP VP ++ A +V + GD V +++ +D
Sbjct: 158 QLKEQFYLQALKLPNRTHPDVPTGDESQA--RVLHVVGDKPVPSLPPSGPLEIAEKLDIL 215
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 840 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI 995
+ ++Y + D + +E+ L T+E +A D + DL I
Sbjct: 276 PNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPI 320
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,706,455
Number of extensions: 1113999
Number of successful extensions: 4970
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4911
Number of HSP's successfully gapped: 12
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2... 535 e-152
Alignment gi|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [M... 535 e-152
Alignment gi|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor ... 59 6e-09
>ref|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 512
Score = 535 bits (1379), Expect = e-152
Identities = 269/301 (89%), Positives = 279/301 (92%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 1020 F 1022
F
Sbjct: 301 F 301
>ref|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 536
Score = 535 bits (1379), Expect = e-152
Identities = 269/301 (89%), Positives = 279/301 (92%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 1020 F 1022
F
Sbjct: 301 F 301
>ref|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 518
Score = 58.9 bits (141), Expect = 6e-09
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 3/176 (1%)
Frame = +3
Query: 477 ERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMV 650
+ +LE + ++ + N HP P+ ++ A +V R+ G+ + H+++ +
Sbjct: 155 QETQLEEQLYQQALRLPNQTHPDTPVGDESQA--RVVRVVGEKPAFSFQPRGHLEIGEKL 212
Query: 651 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 830
D ++ + V+G R Y+L+G L+ L+ + L L SRG+TP+ P +R V +
Sbjct: 213 DIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLSKLVSRGFTPMTVPDLLRGAVFEGC 272
Query: 831 AQLSQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI 995
+ ++Y + D + +E+ L T+E +A D + DL +
Sbjct: 273 GMTPNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPV 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,809,011
Number of extensions: 904768
Number of successful extensions: 4206
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4156
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmi... 300 1e-81
Alignment gi|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-typ... 93 2e-19
>ref|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic [Sus scrofa].
Length = 437
Score = 300 bits (767), Expect = 1e-81
Identities = 157/195 (80%), Positives = 170/195 (87%), Gaps = 2/195 (1%)
Frame = +3
Query: 444 LIDEAILKCDAERIKLEAERFENLREIGNLLHPSV--PISNDEDADNKVERIWGDCSVRK 617
L+D+ ++K D+E + R +NL ++ NL ++ + EDADNKVERIWGDCSVRK
Sbjct: 32 LVDQ-LVKADSEWRRCRF-RADNLNKLKNLCSRTIGEKMKVREDADNKVERIWGDCSVRK 89
Query: 618 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 797
KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP
Sbjct: 90 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 149
Query: 798 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 977
FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR
Sbjct: 150 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 209
Query: 978 PEDLQI*FAGLPPAF 1022
PEDL I +AGL F
Sbjct: 210 PEDLPIKYAGLSTCF 224
Score = 146 bits (368), Expect = 2e-35
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGN 347
SRTIGEKMK +E N
Sbjct: 61 SRTIGEKMKVREDADN 76
>ref|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 2-like,
partial [Sus scrofa].
Length = 248
Score = 93.2 bits (230), Expect = 2e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 420 AQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 566
AQ KVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 200 AQPHKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 248
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,684,953
Number of extensions: 724155
Number of successful extensions: 3092
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3050
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapien... 536 e-152
Alignment gi|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b ... 52 7e-07
Alignment gi|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform... 52 7e-07
>ref|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 514
Score = 536 bits (1381), Expect = e-152
Identities = 270/301 (89%), Positives = 279/301 (92%)
Frame = +3
Query: 120 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 299
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 300 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 479
S+TIGEKMKKKE VG+DES+PE+V KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 480 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 659
RIKLEAERFENLREIGNLLHPSVPISNDED DNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGY PIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 840 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI*FAGLPPA 1019
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDL I +AGL
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 1020 F 1022
F
Sbjct: 301 F 301
>ref|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b precursor [Homo
sapiens].
Length = 518
Score = 52.4 bits (124), Expect = 7e-07
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Frame = +3
Query: 486 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 659
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 158 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 215
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 840 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI 995
+ ++Y + D +++ L T+E +A D + DL +
Sbjct: 276 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPV 320
>ref|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform a precursor [Homo
sapiens].
Length = 520
Score = 52.4 bits (124), Expect = 7e-07
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Frame = +3
Query: 486 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 659
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 160 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 217
Query: 660 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 839
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 218 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 277
Query: 840 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLQI 995
+ ++Y + D +++ L T+E +A D + DL +
Sbjct: 278 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPV 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,803,889
Number of extensions: 1085246
Number of successful extensions: 5086
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5005
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007599
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 412 e-112
>Sscrofa_Chr04
|| Length = 143465943
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 49 agtgagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368486 agtgagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccag 121368427
Query: 109 gaggaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368426 gaggaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccag 121368367
Query: 169 ccctcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368366 ccctcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctgg 121368307
Query: 229 tgaaggcagacagcgagtggcgacgatg 256
||||||||||||||||||||||||||||
Sbjct: 121368306 tgaaggcagacagcgagtggcgacgatg 121368279
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 703 tcctgaagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 762
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355333 tcctgtagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 121355274
Query: 763 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355273 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 121355214
Query: 823 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 870
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355213 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 121355166
Score = 309 bits (156), Expect = 2e-81
Identities = 159/160 (99%)
Strand = Plus / Minus
Query: 408 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121358055 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 121357996
Query: 468 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagatcggg 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121357995 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagattggg 121357936
Query: 528 aatcttctgcacccctctgtgcccatcagcaatgatgagg 567
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121357935 aatcttctgcacccctctgtgcccatcagcaatgatgagg 121357896
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 565 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356942 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 121356883
Query: 625 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356882 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 121356823
Query: 685 ctgggagtcgagggtacttcctgaagg 711
|||||||||||||||||||||||||||
Sbjct: 121356822 ctgggagtcgagggtacttcctgaagg 121356796
Score = 289 bits (146), Expect = 2e-75
Identities = 168/174 (96%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 865 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121354068 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 121354009
Query: 925 ttgccacctctgagcagcccattgccgccctccaccgggacgagtggcttcggcccgagg 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121354008 ttgccacctctgagcagcccattgccgccctccaccgggacgagtggcttcggccggagg 121353949
Query: 985 acttgcaaatctagtttgctggcct-tccacctgctttcgccgggaggtgggct 1037
|||||| |||| ||| ||||||||| |||||||||||||||| |||||||||||
Sbjct: 121353948 acttgccaatcaagtatgctggcctgtccacctgctttcgccaggaggtgggct 121353895
Score = 157 bits (79), Expect = 1e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 325 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121359573 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 121359514
Query: 385 atcttactgcagacactttaact 407
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Sbjct: 121359513 accttactgcagacactttaact 121359491
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 256 gcagatttcgggcagacaatctgaacaagctgaagaacctatgcagcaggacaattggag 315
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Sbjct: 121363126 gcagatttcgggcagacaatttgaacaagctgaagaacctatgcagcaggacaattggag 121363067
Query: 316 agaaaatgaag 326
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Sbjct: 121363066 agaaaatgaag 121363056
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,752,421
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 7
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)