Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus]. 936 0.0
Alignment gi|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor ... 176 5e-44
>ref|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 514
Score = 936 bits (2419), Expect = 0.0
Identities = 468/514 (91%), Positives = 480/514 (93%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VGNDES+PEDV KV+QIKKVRLL+DEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNLDDLTADTLTNLKVSQIKKVRLLVDEAILKCDAE 120
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFE+LREIGNLLHPSVPIS+DEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFESLREIGNLLHPSVPISDDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQ+ALRTL SRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAEEFYQSLGIPYH
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEEFYQSLGIPYH 360
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGI+VPEKLKEFMPPGLQELIPFVK APIDQEP
Sbjct: 421 EFVHMLNATMCATTRTICAILENYQTEKGILVPEKLKEFMPPGLQELIPFVKAAPIDQEP 480
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
AR+VALESQLQ++EVTDA
Sbjct: 481 SKKQKKQHEGSKKKGAARDVALESQLQNMEVTDA 514
>ref|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 518
Score = 176 bits (447), Expect = 5e-44
Identities = 106/342 (30%), Positives = 181/342 (52%), Gaps = 4/342 (1%)
Frame = +3
Query: 435 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 608
+LE + + + N HP VP+ ++ A +V + GD + H+++ +D
Sbjct: 158 QLEEQFYLRALRLPNQTHPDVPVGDESQA--RVLHVVGDKPAFSFQPRGHLEIAEKLDII 215
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMT 275
Query: 789 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 965
++Y + D + +E+ L T+E +A D + DLPI+ ST
Sbjct: 276 PNAKPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSST 327
Query: 966 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPY 1145
C+R E + G++ G++RVH F K+E F + P +S E+ EE + E LG+ +
Sbjct: 328 CYRAETDT-GKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHF 386
Query: 1146 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 1325
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 443
Query: 1326 VEFVHMLNATMCATTRTICAILENYQTEKG-IVVPEKLKEFM 1448
++F H +NAT CA R + A+LE+YQ + G ++VP L+ ++
Sbjct: 444 LQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYL 485
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,356,130
Number of extensions: 1913224
Number of successful extensions: 8334
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8253
Number of HSP's successfully gapped: 2
Length of query: 618
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 510
Effective length of database: 14,107,870
Effective search space: 7195013700
Effective search space used: 7195013700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase iso... 929 0.0
Alignment gi|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase iso... 923 0.0
Alignment gi|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase iso... 915 0.0
Alignment gi|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase iso... 907 0.0
Alignment gi|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase iso... 906 0.0
Alignment gi|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase iso... 895 0.0
Alignment gi|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase iso... 809 0.0
Alignment gi|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase iso... 633 0.0
Alignment gi|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mi... 173 4e-43
>ref|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 513
Score = 929 bits (2400), Expect = 0.0
Identities = 465/514 (90%), Positives = 478/514 (92%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGIPYH
Sbjct: 300 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYH 359
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 360 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 419
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP
Sbjct: 420 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 479
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
+R+V LESQLQ++EVTD+
Sbjct: 480 SKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 513
>ref|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 516
Score = 923 bits (2386), Expect = 0.0
Identities = 465/517 (89%), Positives = 478/517 (92%), Gaps = 3/517 (0%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXK---VAQIKKVRLLIDEAILKC 419
S+TIGEKMKKKE VG DES+PED K V+QIKKVRLLIDEAILKC
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLALLKELEVSQIKKVRLLIDEAILKC 119
Query: 420 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMV 599
DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMV
Sbjct: 120 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMV 179
Query: 600 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 779
DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV
Sbjct: 180 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 239
Query: 780 AQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 959
AQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL
Sbjct: 240 AQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 299
Query: 960 STCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGI 1139
STCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGI
Sbjct: 300 STCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGI 359
Query: 1140 PYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMM 1319
PYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMM
Sbjct: 360 PYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMM 419
Query: 1320 DKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPID 1499
DKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPID
Sbjct: 420 DKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPID 479
Query: 1500 QEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
QEP +R+V LESQLQ++EVTD+
Sbjct: 480 QEPSKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 516
>ref|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase isoform 2 [Canis
familiaris].
Length = 536
Score = 915 bits (2366), Expect = 0.0
Identities = 465/537 (86%), Positives = 478/537 (89%), Gaps = 23/537 (4%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGIPYH
Sbjct: 300 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYH 359
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMD-- 1322
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMD
Sbjct: 360 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKI 419
Query: 1323 ---------------------KVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLK 1439
KVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLK
Sbjct: 420 KNNPHLSTEDKLKALSSLSPKKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLK 479
Query: 1440 EFMPPGLQELIPFVKPAPIDQEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
EFMPPGLQELIPFVKPAPIDQEP +R+V LESQLQ++EVTD+
Sbjct: 480 EFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 536
>ref|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase isoform 6 [Canis
familiaris].
Length = 532
Score = 907 bits (2345), Expect = 0.0
Identities = 461/533 (86%), Positives = 474/533 (88%), Gaps = 19/533 (3%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 789 SQFDEELYKVIGKGS-------------------EKSDDNSYEEKYLIATSEQPIAALHR 911
SQFDEELYKV G EKSDDNSY+EKYLIATSEQPIAALHR
Sbjct: 240 SQFDEELYKVSSLGITGPHSESLGWHFLPNNLSFEKSDDNSYDEKYLIATSEQPIAALHR 299
Query: 912 DEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF 1091
DEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF
Sbjct: 300 DEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF 359
Query: 1092 EEMIGTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDY 1271
EEMI TAE+FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDY
Sbjct: 360 EEMITTAEDFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDY 419
Query: 1272 QARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMP 1451
QARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMP
Sbjct: 420 QARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMP 479
Query: 1452 PGLQELIPFVKPAPIDQEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
PGLQELIPFVKPAPIDQEP +R+V LESQLQ++EVTD+
Sbjct: 480 PGLQELIPFVKPAPIDQEPSKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 532
>ref|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase isoform 7 [Canis
familiaris].
Length = 505
Score = 906 bits (2342), Expect = 0.0
Identities = 457/514 (88%), Positives = 470/514 (91%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYK SDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYK--------SDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 291
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGIPYH
Sbjct: 292 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYH 351
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 352 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 411
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP
Sbjct: 412 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 471
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
+R+V LESQLQ++EVTD+
Sbjct: 472 SKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 505
>ref|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase isoform 4 [Canis
familiaris].
Length = 504
Score = 895 bits (2314), Expect = 0.0
Identities = 453/514 (88%), Positives = 467/514 (90%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKV ++ EEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKVT---------STTEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 290
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGIPYH
Sbjct: 291 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYH 350
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 351 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 410
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP
Sbjct: 411 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 470
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
+R+V LESQLQ++EVTD+
Sbjct: 471 SKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 504
>ref|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase isoform 5 [Canis
familiaris].
Length = 465
Score = 809 bits (2090), Expect = 0.0
Identities = 418/514 (81%), Positives = 430/514 (83%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDE------------------------------- 148
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 149 -----------------GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 191
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 192 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 251
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSLGIPYH
Sbjct: 252 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYH 311
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 312 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 371
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP
Sbjct: 372 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 431
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
+R+V LESQLQ++EVTD+
Sbjct: 432 SKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 465
>ref|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase isoform 1 [Canis
familiaris].
Length = 339
Score = 633 bits (1633), Expect = 0.0
Identities = 314/339 (92%), Positives = 321/339 (94%)
Frame = +3
Query: 594 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 773
MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ
Sbjct: 1 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 60
Query: 774 EVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 953
EVAQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYA
Sbjct: 61 EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 120
Query: 954 GLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSL 1133
GLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAE+FYQSL
Sbjct: 121 GLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSL 180
Query: 1134 GIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK 1313
GIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK
Sbjct: 181 GIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK 240
Query: 1314 MMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAP 1493
MMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAP
Sbjct: 241 MMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAP 300
Query: 1494 IDQEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
IDQEP +R+V LESQLQ++EVTD+
Sbjct: 301 IDQEPSKKQKKQHEGSKKKGASRDVPLESQLQNMEVTDS 339
>ref|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mitochondrial precursor
(Serine--tRNA ligase) (SerRSmt) [Canis familiaris].
Length = 518
Score = 173 bits (439), Expect = 4e-43
Identities = 103/342 (30%), Positives = 180/342 (52%), Gaps = 4/342 (1%)
Frame = +3
Query: 435 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRK--KYSHVDLVVMVDGF 608
+L+ + + ++ N HP VP ++ A +V + GD V +++ +D
Sbjct: 158 QLKEQFYLQALKLPNRTHPDVPTGDESQA--RVLHVVGDKPVPSLPPSGPLEIAEKLDIL 215
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 789 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 965
+ ++Y + D + +E+ L T+E +A D + DLPI+ ST
Sbjct: 276 PNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSST 327
Query: 966 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPY 1145
C+R E + G++ RG++RVH F K+E F + P +S ++ +E + E LG+ +
Sbjct: 328 CYRAETDT-GKEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLDEFLSLQMEILTELGLHF 386
Query: 1146 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 1325
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + +K +
Sbjct: 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF---QKEAGE 443
Query: 1326 VEFVHMLNATMCATTRTICAILENYQTEKG-IVVPEKLKEFM 1448
++F H +NAT CA R + A+LE+ Q E G ++VP L+ ++
Sbjct: 444 LQFAHTVNATACAVPRLLIALLESNQQEDGSVLVPPVLQPYL 485
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,384,067
Number of extensions: 1970740
Number of successful extensions: 7951
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7873
Number of HSP's successfully gapped: 10
Length of query: 618
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 509
Effective length of database: 15,240,880
Effective search space: 7757607920
Effective search space used: 7757607920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2... 924 0.0
Alignment gi|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [M... 910 0.0
Alignment gi|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor ... 173 5e-43
>ref|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 512
Score = 924 bits (2387), Expect = 0.0
Identities = 462/514 (89%), Positives = 477/514 (92%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF+EMI TAEEFYQSLGIPYH
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLGIPYH 360
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQ EKGI VPEKL+EFMPPGLQELIPFVKPAPIDQEP
Sbjct: 421 EFVHMLNATMCATTRTICAILENYQAEKGIAVPEKLREFMPPGLQELIPFVKPAPIDQEP 480
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
A+EV LE+QLQS+EVT+A
Sbjct: 481 --SKKQKKQHEGSKKKAKEVPLENQLQSMEVTEA 512
>ref|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 536
Score = 910 bits (2352), Expect = 0.0
Identities = 462/538 (85%), Positives = 477/538 (88%), Gaps = 24/538 (4%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF+EMI TAEEFYQSLGIPYH
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLGIPYH 360
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMD-- 1322
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMD
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKK 420
Query: 1323 ----------------------KVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKL 1436
KVEFVHMLNATMCATTRTICAILENYQ EKGI VPEKL
Sbjct: 421 KNNLRFSTQNKLKAMSSLFSPKKVEFVHMLNATMCATTRTICAILENYQAEKGIAVPEKL 480
Query: 1437 KEFMPPGLQELIPFVKPAPIDQEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
+EFMPPGLQELIPFVKPAPIDQEP A+EV LE+QLQS+EVT+A
Sbjct: 481 REFMPPGLQELIPFVKPAPIDQEP--SKKQKKQHEGSKKKAKEVPLENQLQSMEVTEA 536
>ref|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 518
Score = 173 bits (438), Expect = 5e-43
Identities = 99/345 (28%), Positives = 181/345 (52%), Gaps = 4/345 (1%)
Frame = +3
Query: 426 ERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMV 599
+ +LE + ++ + N HP P+ ++ A +V R+ G+ + H+++ +
Sbjct: 155 QETQLEEQLYQQALRLPNQTHPDTPVGDESQA--RVVRVVGEKPAFSFQPRGHLEIGEKL 212
Query: 600 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 779
D ++ + V+G R Y+L+G L+ L+ + L L SRG+TP+ P +R V +
Sbjct: 213 DIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLSKLVSRGFTPMTVPDLLRGAVFEGC 272
Query: 780 AQLSQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 956
+ ++Y + D + +E+ L T+E +A D + DLP++
Sbjct: 273 GMTPNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPVRMVC 324
Query: 957 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLG 1136
STC+R E + G++ G++RVH F K+E F + P +S ++ +E + E LG
Sbjct: 325 ASTCYRAETDT-GKEPWGLYRVHHFTKVEMFGVTGPGLEQSSQLLDEFLSLQVEILTELG 383
Query: 1137 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 1316
+ + ++++ + L A +K D+EAW PG G + E+ S SNCTD+Q+RRL I + +
Sbjct: 384 LHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRYGEVTSASNCTDFQSRRLYIMF---ETE 440
Query: 1317 MDKVEFVHMLNATMCATTRTICAILE-NYQTEKGIVVPEKLKEFM 1448
+++F H +NAT CA R + A+LE N Q + ++VP L+ ++
Sbjct: 441 TGELQFAHTVNATACAVPRVLIALLESNQQKDGSVLVPAALQPYL 485
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,148,140
Number of extensions: 1621426
Number of successful extensions: 6709
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6650
Number of HSP's successfully gapped: 3
Length of query: 618
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 511
Effective length of database: 12,403,707
Effective search space: 6338294277
Effective search space used: 6338294277
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmi... 698 0.0
Alignment gi|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-typ... 93 4e-19
>ref|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic [Sus scrofa].
Length = 437
Score = 698 bits (1801), Expect = 0.0
Identities = 356/408 (87%), Positives = 369/408 (90%), Gaps = 2/408 (0%)
Frame = +3
Query: 393 LIDEAILKCDAERIKLEAERFENLREIGNLLHPSV--PISNDEDADNKVERIWGDCSVRK 566
L+D+ ++K D+E + R +NL ++ NL ++ + EDADNKVERIWGDCSVRK
Sbjct: 32 LVDQ-LVKADSEWRRCRF-RADNLNKLKNLCSRTIGEKMKVREDADNKVERIWGDCSVRK 89
Query: 567 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 746
KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP
Sbjct: 90 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 149
Query: 747 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 926
FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR
Sbjct: 150 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 209
Query: 927 PEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIG 1106
PEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSW+M EMI
Sbjct: 210 PEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWKMLREMIE 269
Query: 1107 TAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRL 1286
TAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRL
Sbjct: 270 TAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRL 329
Query: 1287 RIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQE 1466
RIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQE
Sbjct: 330 RIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQE 389
Query: 1467 LIPFVKPAPIDQEPXXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
LIPFVKPAPIDQEP AREVALESQLQSLEVTDA
Sbjct: 390 LIPFVKPAPIDQEPSKKQKKQHEGSKKKGGAREVALESQLQSLEVTDA 437
Score = 146 bits (368), Expect = 4e-35
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGN 296
SRTIGEKMK +E N
Sbjct: 61 SRTIGEKMKVREDADN 76
>ref|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 2-like,
partial [Sus scrofa].
Length = 248
Score = 93.2 bits (230), Expect = 4e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 369 AQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 515
AQ KVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 200 AQPHKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 248
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,703,810
Number of extensions: 1231606
Number of successful extensions: 5143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5096
Number of HSP's successfully gapped: 3
Length of query: 618
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 513
Effective length of database: 8,729,747
Effective search space: 4478360211
Effective search space used: 4478360211
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapien... 930 0.0
Alignment gi|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b ... 173 6e-43
Alignment gi|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform... 173 6e-43
>ref|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 514
Score = 930 bits (2403), Expect = 0.0
Identities = 464/514 (90%), Positives = 478/514 (92%)
Frame = +3
Query: 69 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 248
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 249 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 428
S+TIGEKMKKKE VG+DES+PE+V KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 429 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 608
RIKLEAERFENLREIGNLLHPSVPISNDED DNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGY PIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 789 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 968
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 969 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPYH 1148
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMI TAEEFYQSLGIPYH
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH 360
Query: 1149 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 1328
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
Query: 1329 EFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEP 1508
EFVHMLNATMCATTRTICAILENYQTEKGI VPEKLKEFMPPGLQELIPFVKPAPI+QEP
Sbjct: 421 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP 480
Query: 1509 XXXXXXXXXXXXXXXXAREVALESQLQSLEVTDA 1610
AR+V LE++LQ++EVTDA
Sbjct: 481 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA 514
>ref|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b precursor [Homo
sapiens].
Length = 518
Score = 173 bits (438), Expect = 6e-43
Identities = 103/342 (30%), Positives = 181/342 (52%), Gaps = 4/342 (1%)
Frame = +3
Query: 435 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 608
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 158 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 215
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 789 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 965
+ ++Y + D +++ L T+E +A D + DLP++ ST
Sbjct: 276 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 327
Query: 966 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPY 1145
C+R E + G++ RG++RVH F K+E F + P +S ++ EE + E LG+ +
Sbjct: 328 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHF 386
Query: 1146 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 1325
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 443
Query: 1326 VEFVHMLNATMCATTRTICAILE-NYQTEKGIVVPEKLKEFM 1448
++F H +NAT CA R + A+LE N Q + ++VP L+ ++
Sbjct: 444 LQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 485
>ref|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform a precursor [Homo
sapiens].
Length = 520
Score = 173 bits (438), Expect = 6e-43
Identities = 103/342 (30%), Positives = 181/342 (52%), Gaps = 4/342 (1%)
Frame = +3
Query: 435 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 608
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 160 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 217
Query: 609 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 788
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 218 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 277
Query: 789 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 965
+ ++Y + D +++ L T+E +A D + DLP++ ST
Sbjct: 278 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 329
Query: 966 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIGTAEEFYQSLGIPY 1145
C+R E + G++ RG++RVH F K+E F + P +S ++ EE + E LG+ +
Sbjct: 330 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHF 388
Query: 1146 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 1325
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 389 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 445
Query: 1326 VEFVHMLNATMCATTRTICAILE-NYQTEKGIVVPEKLKEFM 1448
++F H +NAT CA R + A+LE N Q + ++VP L+ ++
Sbjct: 446 LQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 487
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,989,799
Number of extensions: 1937149
Number of successful extensions: 8068
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7975
Number of HSP's successfully gapped: 3
Length of query: 618
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 509
Effective length of database: 14,704,088
Effective search space: 7484380792
Effective search space used: 7484380792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007600
(1856 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 753 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 753 bits (380), Expect = 0.0
Identities = 386/388 (99%)
Strand = Plus / Minus
Query: 1452 ccaggtctccaagaactgatcccctttgtgaagcctgcgcctattgaccaggagccatct 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351313 ccaggtctccaagaactgatcccctttgtgaagcctgcgcctattgaccaggagccatct 121351254
Query: 1512 aagaagcagaagaagcagcatgagggcagcaaaaagaaagggggagccagagaggttgcc 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351253 aagaagcagaagaagcagcatgagggcagcaaaaagaaagggggagccagagaggttgcc 121351194
Query: 1572 ctggaaagccagctgcagagcctggaggtcactgatgcctgaacattcctctgtcccacc 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351193 ctggaaagccagctgcagagcctggaggtcactgatgcctgaacattcctctgtcccacc 121351134
Query: 1632 ttgccaggctttcacttccagcagctggaatctccgcctgcccacaggcaggaagccaag 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351133 ttgccaggctttcacttccagcagctggaatctccgcctgcccacaggcaggaagccaag 121351074
Query: 1692 cacgcacacatcacccacccatccgactacattgctaaaaggggaaccatctgccacgta 1751
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351073 cacgcacgcatcacccacccatccgactacattgctaaaaggggaaccatctgccacgta 121351014
Query: 1752 cagtgtgcagcgttccccttttctcgcctgggcatgagatccaatcactggtgactgatg 1811
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351013 cagtgtgcagcgttcctcttttctcgcctgggcatgagatccaatcactggtgactgatg 121350954
Query: 1812 aaaccatgtaataaagcatctctgaggg 1839
||||||||||||||||||||||||||||
Sbjct: 121350953 aaaccatgtaataaagcatctctgaggg 121350926
Score = 436 bits (220), Expect = e-119
Identities = 223/224 (99%)
Strand = Plus / Minus
Query: 814 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121354068 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 121354009
Query: 874 ttgccacctctgagcagcccattgctgccctccaccgggacgagtggcttcggccggagg 933
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121354008 ttgccacctctgagcagcccattgccgccctccaccgggacgagtggcttcggccggagg 121353949
Query: 934 acttgccaatcaagtatgctggcctgtccacctgctttcgccaggaggtgggctcccacg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121353948 acttgccaatcaagtatgctggcctgtccacctgctttcgccaggaggtgggctcccacg 121353889
Query: 994 gccgcgacacccgcggcatctttcgagtccatcagtttgagaag 1037
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121353888 gccgcgacacccgcggcatctttcgagtccatcagtttgagaag 121353845
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 1 gagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368483 gagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccaggag 121368424
Query: 61 gaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccagccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368423 gaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccagccc 121368364
Query: 121 tcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368363 tcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctggtga 121368304
Query: 181 aggcagacagcgagtggcgacgatg 205
|||||||||||||||||||||||||
Sbjct: 121368303 aggcagacagcgagtggcgacgatg 121368279
Score = 325 bits (164), Expect = 5e-86
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 652 tcctgaagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 711
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355333 tcctgtagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 121355274
Query: 712 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355273 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 121355214
Query: 772 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 819
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355213 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 121355166
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 1165 caggttctttgaatcatgctgccagtaagaagcttgacctggaggcctggtttccgggct 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121352875 caggttctttgaatcatgctgccagtaagaagcttgacctggaggcctggtttccgggct 121352816
Query: 1225 cgggagccttccgtgagttagtctcctgttctaactgcaccgactatcaggctcgccggc 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121352815 cgggagccttccgtgagttagtctcctgttctaactgcaccgactatcaggctcgccggc 121352756
Query: 1285 tccgaatccgatacgggcaaaccaagaagatgatggacaaggt 1327
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121352755 tccgaatccgatacgggcaaaccaagaagatgatggacaaggt 121352713
Score = 309 bits (156), Expect = 3e-81
Identities = 159/160 (99%)
Strand = Plus / Minus
Query: 357 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121358055 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 121357996
Query: 417 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagatcggg 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121357995 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagattggg 121357936
Query: 477 aatcttctgcacccctctgtgcccatcagcaatgatgagg 516
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121357935 aatcttctgcacccctctgtgcccatcagcaatgatgagg 121357896
Score = 291 bits (147), Expect = 7e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 514 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356942 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 121356883
Query: 574 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356882 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 121356823
Query: 634 ctgggagtcgagggtacttcctgaagg 660
|||||||||||||||||||||||||||
Sbjct: 121356822 ctgggagtcgagggtacttcctgaagg 121356796
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1324 aggtggagtttgtccacatgcttaacgccacgatgtgcgccacgacccgcaccatctgtg 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351757 aggtggagtttgtccacatgcttaacgccacgatgtgcgccacgacccgcaccatctgtg 121351698
Query: 1384 ccatcctggagaactaccagacagagaagggcatcgtcgtgccagagaaattgaaggaat 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121351697 ccatcctggagaactaccagacagagaagggcatcgtcgtgccagagaaattgaaggaat 121351638
Query: 1444 tcatgccgccaggt 1457
||||||||||||||
Sbjct: 121351637 tcatgccgccaggt 121351624
Score = 226 bits (114), Expect = 3e-56
Identities = 129/134 (96%)
Strand = Plus / Minus
Query: 1036 agattgaacagtttgtctactcatcgccacacgacaacaagtcctgggagatgtttgagg 1095
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 121353272 agattgaacagtttgtctactcatcgccacacgacaacaagtcctggaagatgttgaggg 121353213
Query: 1096 agatgatcggaaccgcggaggagttctaccagtccctggggatcccctaccacatcgtga 1155
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121353212 agatgatcgaaaccgcggaggagttctaccagtccctggggatcccctaccacatcgtga 121353153
Query: 1156 atatcgtctcaggt 1169
||||||||||||||
Sbjct: 121353152 atatcgtctcaggt 121353139
Score = 157 bits (79), Expect = 3e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 274 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121359573 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 121359514
Query: 334 atcttactgcagacactttaact 356
| |||||||||||||||||||||
Sbjct: 121359513 accttactgcagacactttaact 121359491
Score = 133 bits (67), Expect = 4e-28
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 205 gcagatttcgggcagacaatctgaacaagctgaagaacctatgcagcaggacaattggag 264
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121363126 gcagatttcgggcagacaatttgaacaagctgaagaacctatgcagcaggacaattggag 121363067
Query: 265 agaaaatgaag 275
|||||||||||
Sbjct: 121363066 agaaaatgaag 121363056
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,762,909
Number of extensions: 338
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 11
Length of query: 1856
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1834
Effective length of database: 2,808,408,574
Effective search space: 5150621324716
Effective search space used: 5150621324716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)