Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus]. 620 e-178
Alignment gi|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor ... 82 7e-16
>ref|NP_776600.1| seryl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 514
Score = 620 bits (1599), Expect = e-178
Identities = 310/339 (91%), Positives = 318/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VGNDES+PEDV KV+QIKKVRLL+DEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNLDDLTADTLTNLKVSQIKKVRLLVDEAILKCDAE 120
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFE+LREIGNLLHPSVPIS+DEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFESLREIGNLLHPSVPISDDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQ+ALRTL SRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 339
>ref|NP_776882.1| seryl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 518
Score = 82.4 bits (202), Expect = 7e-16
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 3/220 (1%)
Frame = +3
Query: 465 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 638
+LE + + + N HP VP+ ++ A +V + GD + H+++ +D
Sbjct: 158 QLEEQFYLRALRLPNQTHPDVPVGDESQA--RVLHVVGDKPAFSFQPRGHLEIAEKLDII 215
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMT 275
Query: 819 -SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 995
+ ++Y + D + +E+ L T+E +A D + DLPI+ ST
Sbjct: 276 PNAKPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSST 327
Query: 996 CFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
C+R E + G++ G++R H F K+E + P +S E
Sbjct: 328 CYRAETDT-GKEPWGLYRVHHFTKVEMFGVTGPGLEQSSE 366
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,532,704
Number of extensions: 1342483
Number of successful extensions: 6385
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6307
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase iso... 615 e-176
Alignment gi|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase iso... 615 e-176
Alignment gi|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase iso... 609 e-174
Alignment gi|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase iso... 593 e-170
Alignment gi|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase iso... 592 e-169
Alignment gi|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase iso... 582 e-166
Alignment gi|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase iso... 495 e-140
Alignment gi|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase iso... 319 3e-87
Alignment gi|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mi... 81 2e-15
>ref|XP_852762.1| PREDICTED: similar to seryl-tRNA synthetase isoform 2 [Canis
familiaris].
Length = 536
Score = 615 bits (1585), Expect = e-176
Identities = 309/339 (91%), Positives = 316/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 300 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 338
>ref|XP_866214.1| PREDICTED: similar to seryl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 513
Score = 615 bits (1585), Expect = e-176
Identities = 309/339 (91%), Positives = 316/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 299
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 300 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 338
>ref|XP_866304.1| PREDICTED: similar to seryl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 516
Score = 609 bits (1571), Expect = e-174
Identities = 309/342 (90%), Positives = 316/342 (92%), Gaps = 3/342 (0%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXK---VAQIKKVRLLIDEAILKC 449
S+TIGEKMKKKE VG DES+PED K V+QIKKVRLLIDEAILKC
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLALLKELEVSQIKKVRLLIDEAILKC 119
Query: 450 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMV 629
DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMV
Sbjct: 120 DAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMV 179
Query: 630 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 809
DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV
Sbjct: 180 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 239
Query: 810 AQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 989
AQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL
Sbjct: 240 AQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 299
Query: 990 STCFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
STCFRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 300 STCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 341
>ref|XP_866257.1| PREDICTED: similar to seryl-tRNA synthetase isoform 6 [Canis
familiaris].
Length = 532
Score = 593 bits (1530), Expect = e-170
Identities = 305/358 (85%), Positives = 312/358 (87%), Gaps = 19/358 (5%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 819 SQFDEELYKVIGKG-------------------SEKSDDNSYEEKYLIATSEQPIAALHR 941
SQFDEELYKV G EKSDDNSY+EKYLIATSEQPIAALHR
Sbjct: 240 SQFDEELYKVSSLGITGPHSESLGWHFLPNNLSFEKSDDNSYDEKYLIATSEQPIAALHR 299
Query: 942 DEWLRPEDLPIKYAGLSTCFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
DEWLRPEDLPIKYAGLSTCFRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 300 DEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 357
>ref|XP_866272.1| PREDICTED: similar to seryl-tRNA synthetase isoform 7 [Canis
familiaris].
Length = 505
Score = 592 bits (1527), Expect = e-169
Identities = 301/339 (88%), Positives = 308/339 (90%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELY KSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELY--------KSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 291
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 292 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 330
>ref|XP_866227.1| PREDICTED: similar to seryl-tRNA synthetase isoform 4 [Canis
familiaris].
Length = 504
Score = 582 bits (1499), Expect = e-166
Identities = 297/339 (87%), Positives = 305/339 (89%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 179
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 180 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 239
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKV ++ EEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 240 SQFDEELYKV---------TSTTEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 290
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 291 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 329
>ref|XP_866242.1| PREDICTED: similar to seryl-tRNA synthetase isoform 5 [Canis
familiaris].
Length = 465
Score = 495 bits (1275), Expect = e-140
Identities = 262/339 (77%), Positives = 268/339 (79%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLV+AD EWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG DES+PED KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVG-DESIPEDALNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAE 119
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 120 RIKLEAERFENLREIGNLLHPSVPISNDE------------------------------- 148
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 149 -----------------GVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 191
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 192 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 251
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 252 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 290
>ref|XP_547245.2| PREDICTED: similar to seryl-tRNA synthetase isoform 1 [Canis
familiaris].
Length = 339
Score = 319 bits (818), Expect = 3e-87
Identities = 158/164 (96%), Positives = 159/164 (96%)
Frame = +3
Query: 624 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 803
MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ
Sbjct: 1 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 60
Query: 804 EVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 983
EVAQLSQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYA
Sbjct: 61 EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 120
Query: 984 GLSTCFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
GLSTCFRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 121 GLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 164
>ref|XP_541632.2| PREDICTED: similar to Seryl-tRNA synthetase, mitochondrial precursor
(Serine--tRNA ligase) (SerRSmt) [Canis familiaris].
Length = 518
Score = 80.9 bits (198), Expect = 2e-15
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Frame = +3
Query: 465 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRK--KYSHVDLVVMVDGF 638
+L+ + + ++ N HP VP ++ A +V + GD V +++ +D
Sbjct: 158 QLKEQFYLQALKLPNRTHPDVPTGDESQA--RVLHVVGDKPVPSLPPSGPLEIAEKLDIL 215
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
++ + V+G R Y+L+G L+ L+ + L L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 819 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 995
+ ++Y + D + +E+ L T+E +A D + DLPI+ ST
Sbjct: 276 PNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSST 327
Query: 996 CFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSP 1094
C+R E + G++ RG++R H F K+E + P
Sbjct: 328 CYRAETDT-GKEPRGLYRVHHFTKVEMFGVTGP 359
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,633,090
Number of extensions: 1384881
Number of successful extensions: 6089
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6026
Number of HSP's successfully gapped: 10
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2... 617 e-177
Alignment gi|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [M... 617 e-177
Alignment gi|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor ... 86 7e-17
>ref|NP_001191908.1| seryl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 512
Score = 617 bits (1591), Expect = e-177
Identities = 308/339 (90%), Positives = 317/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 339
>ref|NP_035449.1| seryl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 536
Score = 617 bits (1591), Expect = e-177
Identities = 308/339 (90%), Positives = 317/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKEAVG+DES+PE+V KV+QIKKVRLLIDEAI KCD E
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
R+KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKG LVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 339
>ref|NP_076126.2| seryl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 518
Score = 85.5 bits (210), Expect = 7e-17
Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Frame = +3
Query: 456 ERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMV 629
+ +LE + ++ + N HP P+ ++ A +V R+ G+ + H+++ +
Sbjct: 155 QETQLEEQLYQQALRLPNQTHPDTPVGDESQA--RVVRVVGEKPAFSFQPRGHLEIGEKL 212
Query: 630 DGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEV 809
D ++ + V+G R Y+L+G L+ L+ + L L SRG+TP+ P +R V +
Sbjct: 213 DIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLSKLVSRGFTPMTVPDLLRGAVFEGC 272
Query: 810 AQLSQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 986
+ ++Y + D + +E+ L T+E +A D + DLP++
Sbjct: 273 GMTPNANPSQIYNI--------DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPVRMVC 324
Query: 987 LSTCFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSP 1094
STC+R E + G++ G++R H F K+E + P
Sbjct: 325 ASTCYRAETDT-GKEPWGLYRVHHFTKVEMFGVTGP 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,275,733
Number of extensions: 1120340
Number of successful extensions: 4994
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4943
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmi... 380 e-106
Alignment gi|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-typ... 93 2e-19
>ref|XP_001925705.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic [Sus scrofa].
Length = 437
Score = 380 bits (976), Expect = e-106
Identities = 195/231 (84%), Positives = 207/231 (89%), Gaps = 2/231 (0%)
Frame = +3
Query: 423 LIDEAILKCDAERIKLEAERFENLREIGNLLHPSV--PISNDEDADNKVERIWGDCSVRK 596
L+D+ ++K D+E + R +NL ++ NL ++ + EDADNKVERIWGDCSVRK
Sbjct: 32 LVDQ-LVKADSEWRRCRF-RADNLNKLKNLCSRTIGEKMKVREDADNKVERIWGDCSVRK 89
Query: 597 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 776
KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP
Sbjct: 90 KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTP 149
Query: 777 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 956
FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR
Sbjct: 150 FFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLR 209
Query: 957 PEDLPIKYAGLSTCFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKS 1109
PEDLPIKYAGLSTCFRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS
Sbjct: 210 PEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKS 260
Score = 146 bits (368), Expect = 2e-35
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGN 326
SRTIGEKMK +E N
Sbjct: 61 SRTIGEKMKVREDADN 76
>ref|XP_003355318.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 2-like,
partial [Sus scrofa].
Length = 248
Score = 93.2 bits (230), Expect = 2e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 399 AQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 545
AQ KVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE
Sbjct: 200 AQPHKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDE 248
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,538,419
Number of extensions: 890133
Number of successful extensions: 3884
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3841
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapien... 618 e-177
Alignment gi|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b ... 82 1e-15
Alignment gi|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform... 82 1e-15
>ref|NP_006504.2| seryl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 514
Score = 618 bits (1593), Expect = e-177
Identities = 309/339 (91%), Positives = 317/339 (93%)
Frame = +3
Query: 99 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 278
MVLDLDLFRVDKGGDPALIRE+QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 279 SRTIGEKMKKKEAVGNDESLPEDVXXXXXXXXXXXXXXKVAQIKKVRLLIDEAILKCDAE 458
S+TIGEKMKKKE VG+DES+PE+V KV+QIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 459 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVRKKYSHVDLVVMVDGF 638
RIKLEAERFENLREIGNLLHPSVPISNDED DNKVERIWGDC+VRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGY PIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 819 SQFDEELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 998
SQFDEELYKVIGKGSEKSDDNSY+EKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 999 FRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSPHDNKSLE 1115
FRQE GSHGRDTRGIFR H FEKIEQ VYSSPHDNKS E
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWE 339
>ref|NP_060297.1| seryl-tRNA synthetase, mitochondrial isoform b precursor [Homo
sapiens].
Length = 518
Score = 81.6 bits (200), Expect = 1e-15
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Frame = +3
Query: 465 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 638
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 158 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 215
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 819 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 995
+ ++Y + D +++ L T+E +A D + DLP++ ST
Sbjct: 276 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 327
Query: 996 CFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSP 1094
C+R E + G++ RG++R H F K+E + P
Sbjct: 328 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGP 359
>ref|NP_001139373.1| seryl-tRNA synthetase, mitochondrial isoform a precursor [Homo
sapiens].
Length = 520
Score = 81.6 bits (200), Expect = 1e-15
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Frame = +3
Query: 465 KLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCSVR--KKYSHVDLVVMVDGF 638
+LE + + ++ N HP VP+ ++ A +V + GD V + H+++ +D
Sbjct: 160 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 217
Query: 639 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 818
++ + V+G R Y+L+G L+ L+ + L RG+TP+ P +R V +
Sbjct: 218 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 277
Query: 819 SQFD-EELYKVIGKGSEKSDDNSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 995
+ ++Y + D +++ L T+E +A D + DLP++ ST
Sbjct: 278 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 329
Query: 996 CFRQEGGSHGRDTRGIFRSHSFEKIEQVVYSSP 1094
C+R E + G++ RG++R H F K+E + P
Sbjct: 330 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGP 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,519,457
Number of extensions: 1347751
Number of successful extensions: 6131
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6042
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007601
(1176 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 412 e-112
>Sscrofa_Chr04
|| Length = 143465943
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 28 agtgagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccag 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368486 agtgagtcggtctcgcagactgctgtggcccgaagtgcatttcccttagtgttggtccag 121368427
Query: 88 gaggaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368426 gaggaggaaagatggtgctggatctggatttgtttcgggtagataaaggaggggacccag 121368367
Query: 148 ccctcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121368366 ccctcatccgagagtcgcaggagaagcgcttcaaggacccaggactagtggatcagctgg 121368307
Query: 208 tgaaggcagacagcgagtggcgacgatg 235
||||||||||||||||||||||||||||
Sbjct: 121368306 tgaaggcagacagcgagtggcgacgatg 121368279
Score = 383 bits (193), Expect = e-103
Identities = 202/205 (98%)
Strand = Plus / Minus
Query: 844 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121354068 aggtgattggcaaaggcagcgaaaagtctgacgacaactcctacgaggagaagtatctga 121354009
Query: 904 ttgccacctctgagcagcccattgccgccctccaccgggacgagtggcttcggccggagg 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121354008 ttgccacctctgagcagcccattgccgccctccaccgggacgagtggcttcggccggagg 121353949
Query: 964 acttgccaatcaagtatgctggcctgtccacctgctttcgccaggaggggggctcccacg 1023
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121353948 acttgccaatcaagtatgctggcctgtccacctgctttcgccaggaggtgggctcccacg 121353889
Query: 1024 ggcgcgacacccgcggaatctttcg 1048
| |||||||||||||| ||||||||
Sbjct: 121353888 gccgcgacacccgcggcatctttcg 121353864
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 682 tcctgaagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 741
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355333 tcctgtagggggtcctggtgttcctggaacaggcgctcatccagtatgcccttcgcactt 121355274
Query: 742 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355273 tgggaagtcggggctacactcccatttatacgcccttcttcatgaggaaggaggtcatgc 121355214
Query: 802 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 849
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355213 aggaagtggcacagctcagccagtttgatgaagaactttataaggtga 121355166
Score = 309 bits (156), Expect = 2e-81
Identities = 159/160 (99%)
Strand = Plus / Minus
Query: 387 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121358055 aacctcaaagtcgcgcaaatcaaaaaagtccgactcctcattgacgaggccatcctaaag 121357996
Query: 447 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagatcggg 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121357995 tgtgatgctgagcggataaagctggaagcagagcggtttgagaaccttcgagagattggg 121357936
Query: 507 aatcttctgcacccctctgtgcccatcagcaatgatgagg 546
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121357935 aatcttctgcacccctctgtgcccatcagcaatgatgagg 121357896
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 544 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356942 aggatgccgacaacaaagtagagaggatctggggtgactgttcggtcaggaagaagtact 121356883
Query: 604 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121356882 ctcacgtggacctcgtggtgatggtggatggcttcgaaggcgaaaagggggctgtggtag 121356823
Query: 664 ctgggagtcgagggtacttcctgaagg 690
|||||||||||||||||||||||||||
Sbjct: 121356822 ctgggagtcgagggtacttcctgaagg 121356796
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 304 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121359573 agaagaaagaggcagtaggaaatgatgagtcccttccagaagatgtattaaatcttgatg 121359514
Query: 364 atcttactgcagacactttaact 386
| |||||||||||||||||||||
Sbjct: 121359513 accttactgcagacactttaact 121359491
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 235 gcagatttcgggcagacaatttgaacaagctgaagaacctatgcagcaggacaattggag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121363126 gcagatttcgggcagacaatttgaacaagctgaagaacctatgcagcaggacaattggag 121363067
Query: 295 agaaaatgaag 305
|||||||||||
Sbjct: 121363066 agaaaatgaag 121363056
Score = 89.7 bits (45), Expect = 3e-15
Identities = 94/109 (86%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 1068 attgaacaggttgtctactcttcgccccacgacaacaagtccctggaaaatgtttgagga 1127
||||||||| |||||||||| ||||| ||||||||||||| ||||||| ||||| |||
Sbjct: 121353270 attgaacagtttgtctactcatcgccacacgacaacaagt-cctggaagatgttgaggga 121353212
Query: 1128 aatgatcggacccgcggaaggattctaccagtccctggggattccctac 1176
||||||| | ||||||| | |||||||||||||||||||| ||||||
Sbjct: 121353211 gatgatcgaaaccgcggaggagttctaccagtccctggggatcccctac 121353163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,961,927
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 8
Length of query: 1176
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1155
Effective length of database: 2,808,413,156
Effective search space: 3243717195180
Effective search space used: 3243717195180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)