Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178257.1| protein TSSC1 [Bos taurus]. 683 0.0
Alignment gi|XP_002690010.1| PREDICTED: tumor suppressing subtransferable... 683 0.0
Alignment gi|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus]. 69 9e-12
Alignment gi|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus]. 68 2e-11
Alignment gi|XP_002689774.1| PREDICTED: WD repeat domain 32-like [Bos tau... 58 2e-08
Alignment gi|XP_586808.4| PREDICTED: WD repeat domain 32-like [Bos taurus]. 58 2e-08
Alignment gi|NP_001094600.1| WD repeat-containing protein 59 [Bos taurus]. 52 1e-06
Alignment gi|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus]. 52 2e-06
Alignment gi|NP_001068825.1| WD repeat and SOCS box-containing protein 2 ... 51 2e-06
>ref|NP_001178257.1| protein TSSC1 [Bos taurus].
Length = 387
Score = 683 bits (1762), Expect = 0.0
Identities = 328/387 (84%), Positives = 345/387 (89%)
Frame = +3
Query: 147 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVL 326
MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQ KNVL
Sbjct: 1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHVIDFDDENNIINKNVL 60
Query: 327 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 506
LH+AGEIWHISASP+DKGVLATCYNKTADSKV+TCAAVWRMP ELEPGG +SPEDAASPA
Sbjct: 61 LHQAGEIWHISASPSDKGVLATCYNKTADSKVVTCAAVWRMPLELEPGGQDSPEDAASPA 120
Query: 507 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXX 686
HALELLCHL+ ARGSTACVAWEPAGDGKRVISLADNH+LLWD
Sbjct: 121 HALELLCHLEPAARGSTACVAWEPAGDGKRVISLADNHILLWDLQESSSQAMLASSASLE 180
Query: 687 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 866
GKGQLKFTTGRWSPHH+C+QVATANDTA+RGWDTRTMSQIYCIE+AHGQLVRDLDFNPNK
Sbjct: 181 GKGQLKFTTGRWSPHHNCSQVATANDTAIRGWDTRTMSQIYCIESAHGQLVRDLDFNPNK 240
Query: 867 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 1046
QY LASCGDDC+VKFWDTR V EPV+TLEEHSHWVWNVRYNHSHDQLVLT SSDSRVILS
Sbjct: 241 QYYLASCGDDCKVKFWDTRNVAEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILS 300
Query: 1047 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 1226
NM SISSEPFGHLVDDDDLSDQEERR EEKSQEPPQDSVIATYEEHEDSVYAV+W++ADP
Sbjct: 301 NMVSISSEPFGHLVDDDDLSDQEERRLEEKSQEPPQDSVIATYEEHEDSVYAVDWSSADP 360
Query: 1227 WLFASLNYDGRLVVNRVPRALKYRILL 1307
WLFASL+YDGRLV+NRVPRALKY ILL
Sbjct: 361 WLFASLSYDGRLVINRVPRALKYHILL 387
>ref|XP_002690010.1| PREDICTED: tumor suppressing subtransferable candidate 1 [Bos
taurus].
Length = 387
Score = 683 bits (1762), Expect = 0.0
Identities = 328/387 (84%), Positives = 345/387 (89%)
Frame = +3
Query: 147 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVL 326
MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQ KNVL
Sbjct: 1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHVIDFDDENNIINKNVL 60
Query: 327 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 506
LH+AGEIWHISASP+DKGVLATCYNKTADSKV+TCAAVWRMP ELEPGG +SPEDAASPA
Sbjct: 61 LHQAGEIWHISASPSDKGVLATCYNKTADSKVVTCAAVWRMPLELEPGGQDSPEDAASPA 120
Query: 507 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXX 686
HALELLCHL+ ARGSTACVAWEPAGDGKRVISLADNH+LLWD
Sbjct: 121 HALELLCHLEPAARGSTACVAWEPAGDGKRVISLADNHILLWDLQESSSQAMLASSASLE 180
Query: 687 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 866
GKGQLKFTTGRWSPHH+C+QVATANDTA+RGWDTRTMSQIYCIE+AHGQLVRDLDFNPNK
Sbjct: 181 GKGQLKFTTGRWSPHHNCSQVATANDTAIRGWDTRTMSQIYCIESAHGQLVRDLDFNPNK 240
Query: 867 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 1046
QY LASCGDDC+VKFWDTR V EPV+TLEEHSHWVWNVRYNHSHDQLVLT SSDSRVILS
Sbjct: 241 QYYLASCGDDCKVKFWDTRNVAEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILS 300
Query: 1047 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 1226
NM SISSEPFGHLVDDDDLSDQEERR EEKSQEPPQDSVIATYEEHEDSVYAV+W++ADP
Sbjct: 301 NMVSISSEPFGHLVDDDDLSDQEERRLEEKSQEPPQDSVIATYEEHEDSVYAVDWSSADP 360
Query: 1227 WLFASLNYDGRLVVNRVPRALKYRILL 1307
WLFASL+YDGRLV+NRVPRALKY ILL
Sbjct: 361 WLFASLSYDGRLVINRVPRALKYHILL 387
>ref|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].
Length = 425
Score = 68.9 bits (167), Expect = 9e-12
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus].
Length = 425
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 118 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 169
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 170 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 220
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 221 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 280
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 281 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 340
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 341 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 382
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 383 PNEPWVICSVSED 395
>ref|XP_002689774.1| PREDICTED: WD repeat domain 32-like [Bos taurus].
Length = 564
Score = 58.2 bits (139), Expect = 2e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
+SP S VA T V +D + I + AH V ++ F N+ + A+C DD
Sbjct: 180 YSPDGSVLTVA-CEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLF--ATCSDDT 236
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+ WD RK+ V TL H+ WV N+ Y+ ++ +L++T+ D VI+
Sbjct: 237 TIALWDLRKLNTKVCTLHGHTSWVKNIEYD-TNTRLLVTSGFDGNVII 283
>ref|XP_586808.4| PREDICTED: WD repeat domain 32-like [Bos taurus].
Length = 650
Score = 58.2 bits (139), Expect = 2e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
+SP S VA T V +D + I + AH V ++ F N+ + A+C DD
Sbjct: 266 YSPDGSVLTVA-CEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLF--ATCSDDT 322
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+ WD RK+ V TL H+ WV N+ Y+ ++ +L++T+ D VI+
Sbjct: 323 TIALWDLRKLNTKVCTLHGHTSWVKNIEYD-TNTRLLVTSGFDGNVII 369
>ref|NP_001094600.1| WD repeat-containing protein 59 [Bos taurus].
Length = 974
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 4/187 (2%)
Frame = +3
Query: 597 VISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQVATANDTAVR 776
V S D ++ +WD G Q+K+ + +C +AT++D VR
Sbjct: 122 VTSSVDTYIYIWDIKDTRKPTVALSAVA--GASQVKWN----KKNANC--LATSHDGDVR 173
Query: 777 GWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEE 956
WD R S AH + LD++P+ ++ LA+ D VKFWD R+ + + L
Sbjct: 174 IWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPC 233
Query: 957 HSHWVWNVRYNHSHDQLVLT----ASSDSRVILSNMASISSEPFGHLVDDDDLSDQEERR 1124
VW RY + LV ++ ++L N+ +++ + DD + + + R+
Sbjct: 234 QVP-VWKARYTPFSNGLVTVMVPQLRRENSLLLWNVFDLNTPVHTFVGHDDVVLEFQWRK 292
Query: 1125 PEEKSQE 1145
+E S++
Sbjct: 293 QKEGSKD 299
>ref|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus].
Length = 323
Score = 51.6 bits (122), Expect = 2e-06
Identities = 35/133 (26%), Positives = 52/133 (39%)
Frame = +3
Query: 570 WEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQV 749
W P G S D L +WD Q + + W ++ V
Sbjct: 163 WSPHIPGCFASSSGDQTLRIWDVKTTGVRIVVPAH-------QAEILSCDWCKYNENLVV 215
Query: 750 ATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKV 929
A D ++RGWD R + Q H +R + F+P LASC D V+FW+ K
Sbjct: 216 TGAVDCSLRGWDLRNVQQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKP 275
Query: 930 TEPVRTLEEHSHW 968
+ T+E H+ +
Sbjct: 276 DPLLETVEHHTEF 288
Score = 50.4 bits (119), Expect = 3e-06
Identities = 28/112 (25%), Positives = 53/112 (47%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
WSPH +++ D +R WD +T + + AH + D+ + + + DC
Sbjct: 163 WSPHIPGCFASSSGDQTLRIWDVKTTG-VRIVVPAHQAEILSCDWCKYNENLVVTGAVDC 221
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMA 1055
++ WD R V +PV L H++ + V+++ H ++ + S D V N +
Sbjct: 222 SLRGWDLRNVQQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFS 273
>ref|NP_001068825.1| WD repeat and SOCS box-containing protein 2 [Bos taurus].
Length = 406
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +3
Query: 720 WSPHH------SCTQVATA-NDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCL 878
W+ HH SC +AT ND ++ W+ +T + + + H +VRDL F P+ L
Sbjct: 113 WARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNL-SGHQDVVRDLSFTPSGSLIL 171
Query: 879 ASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMAS 1058
S D ++ WD K + ++ L H WV+ + L +A+ + V L +M S
Sbjct: 172 VSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSML-CSAAGEKSVFLWSMRS 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,440,748
Number of extensions: 1506512
Number of successful extensions: 10912
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10022
Number of HSP's successfully gapped: 10
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532856.2| PREDICTED: similar to tumor suppressing subtran... 637 0.0
Alignment gi|XP_864445.1| PREDICTED: similar to retinoblastoma binding pr... 69 1e-11
Alignment gi|XP_864423.1| PREDICTED: similar to retinoblastoma binding pr... 69 1e-11
Alignment gi|XP_864405.1| PREDICTED: similar to retinoblastoma binding pr... 69 1e-11
Alignment gi|XP_535325.1| PREDICTED: similar to retinoblastoma binding pr... 69 1e-11
Alignment gi|XP_851729.1| PREDICTED: similar to retinoblastoma binding pr... 69 1e-11
Alignment gi|XP_849201.1| PREDICTED: similar to retinoblastoma binding pr... 68 2e-11
Alignment gi|XP_858100.1| PREDICTED: similar to retinoblastoma binding pr... 68 2e-11
Alignment gi|XP_858055.1| PREDICTED: similar to retinoblastoma binding pr... 68 2e-11
Alignment gi|XP_858015.1| PREDICTED: similar to retinoblastoma binding pr... 68 2e-11
>ref|XP_532856.2| PREDICTED: similar to tumor suppressing subtransferable candidate 1
[Canis familiaris].
Length = 435
Score = 637 bits (1643), Expect = 0.0
Identities = 303/373 (81%), Positives = 323/373 (86%)
Frame = +3
Query: 189 ARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVLLHRAGEIWHISASP 368
ARALTPQTAETDAIRFLVGTQSLKYDNQ KNVLLH+ GEIWHIS SP
Sbjct: 63 ARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISTSP 122
Query: 369 ADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPAHALELLCHLDHPAR 548
AD+GVLATCYNK +DSKVLTCAAVWRMP ELEPG HESP+D++S AH LELLCHLD+ A
Sbjct: 123 ADRGVLATCYNKPSDSKVLTCAAVWRMPKELEPGSHESPDDSSSTAHTLELLCHLDNTAH 182
Query: 549 GSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSP 728
GS ACV WEP GDGKRVISLADNH+LLWD GKGQLKFT+GRWSP
Sbjct: 183 GSMACVTWEPTGDGKRVISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSGRWSP 242
Query: 729 HHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVK 908
HH+ TQVATANDT +RGWDTR+MSQIYCIENAHGQLVRDLDFNPNKQY LASCGDDC+VK
Sbjct: 243 HHTGTQVATANDTTIRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVK 302
Query: 909 FWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMASISSEPFGHLV 1088
FWDTR VTEPV+TLEEHSHWVWNVRYNHSHDQLVLT SSDSRVIL+NM SISSEPFGHLV
Sbjct: 303 FWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILTNMVSISSEPFGHLV 362
Query: 1089 DDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADPWLFASLNYDGRLVV 1268
DDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAV+W++ADPWLFASL+YDGRLV+
Sbjct: 363 DDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 422
Query: 1269 NRVPRALKYRILL 1307
NRVPRALKY ILL
Sbjct: 423 NRVPRALKYHILL 435
>ref|XP_864445.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 8
[Canis familiaris].
Length = 425
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|XP_864423.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 7
[Canis familiaris].
Length = 425
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|XP_864405.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 6
[Canis familiaris].
Length = 410
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|XP_535325.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 1
[Canis familiaris].
Length = 390
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 84 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 135
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 136 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 186
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 187 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 246
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 247 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 306
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 307 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 348
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 349 PNEPWVICSVSEDNIMQV 366
>ref|XP_851729.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 2
[Canis familiaris].
Length = 425
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|XP_849201.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 3
[Canis familiaris].
Length = 469
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 162 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 213
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 214 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 264
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 265 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 324
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 325 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 384
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 385 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 426
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 427 PNEPWVICSVSED 439
>ref|XP_858100.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 9
[Canis familiaris].
Length = 426
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 222 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 384 PNEPWVICSVSED 396
>ref|XP_858055.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 8
[Canis familiaris].
Length = 416
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 109 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 160
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 161 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 211
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 212 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 271
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 272 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 331
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 332 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 373
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 374 PNEPWVICSVSED 386
>ref|XP_858015.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 7
[Canis familiaris].
Length = 391
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 84 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 135
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 136 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 186
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 187 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 246
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 247 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 306
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 307 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 348
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 349 PNEPWVICSVSED 361
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,579,947
Number of extensions: 1545633
Number of successful extensions: 11099
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 10131
Number of HSP's successfully gapped: 25
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958745.2| protein TSSC1 [Mus musculus]. 632 0.0
Alignment gi|NP_033056.2| histone-binding protein RBBP4 [Mus musculus]. 69 8e-12
Alignment gi|NP_033057.3| histone-binding protein RBBP7 [Mus musculus]. 68 1e-11
Alignment gi|NP_694807.2| DDB1- and CUL4-associated factor 10 [Mus muscul... 58 1e-08
Alignment gi|NP_080320.1| WD repeat-containing protein 85 [Mus musculus]. 55 9e-08
Alignment gi|NP_795897.2| WD repeat-containing protein 59 isoform 2 [Mus ... 53 6e-07
Alignment gi|NP_001164214.1| WD repeat-containing protein 59 isoform 1 [M... 53 6e-07
Alignment gi|NP_001164213.1| WD repeat-containing protein 59 isoform 3 [M... 53 6e-07
Alignment gi|NP_067514.2| WD repeat and SOCS box-containing protein 2 [Mu... 51 2e-06
Alignment gi|NP_001155297.1| peroxisomal biogenesis factor 7 isoform 2 [M... 50 4e-06
>ref|NP_958745.2| protein TSSC1 [Mus musculus].
Length = 386
Score = 632 bits (1629), Expect = 0.0
Identities = 304/387 (78%), Positives = 328/387 (84%)
Frame = +3
Query: 147 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVL 326
MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQ KNVL
Sbjct: 1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVL 60
Query: 327 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 506
LH+AGEIWHISASPADKGVLATCYNKT DS+V CAAVWRMP ELE G HESP+D AS A
Sbjct: 61 LHQAGEIWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTA 120
Query: 507 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXX 686
LELLCHLD+ A+G+ ACV WEP GDGK+VISLAD+H+LLWD
Sbjct: 121 QTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLE 180
Query: 687 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 866
G+GQLKFT GRWSPHH+CTQVATA+DT +RGWDTR+MSQIYCIENAHGQLVRDLDFNPNK
Sbjct: 181 GRGQLKFTAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNK 240
Query: 867 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 1046
QY LASCGDDC+VKFWDTR VTEPV+TLEEHSHWVW+VRYNHSHDQLVLT SSDSRVILS
Sbjct: 241 QYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILS 300
Query: 1047 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 1226
NM SISSEPFGHLVDD D+SD EE EKS+EP QD+VIATYEEHEDSVYAV+WA+ADP
Sbjct: 301 NMVSISSEPFGHLVDDGDISDPEEHH-AEKSKEPLQDNVIATYEEHEDSVYAVDWASADP 359
Query: 1227 WLFASLNYDGRLVVNRVPRALKYRILL 1307
WLFASL+YDGRLV+NRVPRALKY ILL
Sbjct: 360 WLFASLSYDGRLVINRVPRALKYHILL 386
>ref|NP_033056.2| histone-binding protein RBBP4 [Mus musculus].
Length = 425
Score = 68.9 bits (167), Expect = 8e-12
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|NP_033057.3| histone-binding protein RBBP7 [Mus musculus].
Length = 425
Score = 68.2 bits (165), Expect = 1e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 118 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 169
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 170 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 220
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 221 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 280
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 281 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 340
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 341 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 382
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 383 PNEPWVICSVSED 395
>ref|NP_694807.2| DDB1- and CUL4-associated factor 10 [Mus musculus].
Length = 566
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
+SP S VA T V +D + I + AH V ++ F N+ + A+C DD
Sbjct: 183 YSPDGSVLTVA-CEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLF--ATCSDDT 239
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+ WD RK+ V TL H+ WV N+ Y+ ++ +L++T+ D VI+
Sbjct: 240 TIALWDLRKLNTKVCTLHGHTSWVKNIEYD-TNTRLLVTSGFDGNVII 286
>ref|NP_080320.1| WD repeat-containing protein 85 [Mus musculus].
Length = 477
Score = 55.5 bits (132), Expect = 9e-08
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 13/188 (6%)
Frame = +3
Query: 720 WSPHHSCTQVATAN------------DTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPN 863
W HH +A N D +RGWDTR + H V + +P+
Sbjct: 190 WPAHHFEAWIAAFNYWQTELVYSGGDDCLLRGWDTRMLGTPVFTSKRHCMGVCSIQSSPH 249
Query: 864 KQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+++ LA+ D V WDTR + +P+ + VW ++++ H L+L A + +
Sbjct: 250 QEHILATGSYDEHVLLWDTRNIRQPLADVPVQG-GVWRLKWHPVHHHLLLAACMHNGFKI 308
Query: 1044 SNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDS-VYAVEWAAA 1220
N +K+ E QD + T E +S VY +W+
Sbjct: 309 LNC--------------------------QKAIEEKQDITVLTSHEMPNSLVYGADWS-- 340
Query: 1221 DPWLFASL 1244
WLF S+
Sbjct: 341 --WLFHSM 346
>ref|NP_795897.2| WD repeat-containing protein 59 isoform 2 [Mus musculus].
Length = 991
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 4/187 (2%)
Frame = +3
Query: 597 VISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQVATANDTAVR 776
V S D ++ +WD G Q+K W+ ++ +AT++D VR
Sbjct: 122 VTSSVDTYIYIWDIKDTRKPTVALSAVA--GASQVK-----WNKKNA-NYLATSHDGDVR 173
Query: 777 GWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEE 956
WD R S AH + LD++P+ ++ A+ D VKFWD R+ + + L
Sbjct: 174 IWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPC 233
Query: 957 HSHWVWNVRYNHSHDQLVLT----ASSDSRVILSNMASISSEPFGHLVDDDDLSDQEERR 1124
VW RY + LV ++ ++L N + +++ + DD + + + RR
Sbjct: 234 QVP-VWKARYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRR 292
Query: 1125 PEEKSQE 1145
+E S++
Sbjct: 293 QKEGSKD 299
>ref|NP_001164214.1| WD repeat-containing protein 59 isoform 1 [Mus musculus].
Length = 993
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 4/187 (2%)
Frame = +3
Query: 597 VISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQVATANDTAVR 776
V S D ++ +WD G Q+K W+ ++ +AT++D VR
Sbjct: 122 VTSSVDTYIYIWDIKDTRKPTVALSAVA--GASQVK-----WNKKNA-NYLATSHDGDVR 173
Query: 777 GWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEE 956
WD R S AH + LD++P+ ++ A+ D VKFWD R+ + + L
Sbjct: 174 IWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPC 233
Query: 957 HSHWVWNVRYNHSHDQLVLT----ASSDSRVILSNMASISSEPFGHLVDDDDLSDQEERR 1124
VW RY + LV ++ ++L N + +++ + DD + + + RR
Sbjct: 234 QVP-VWKARYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRR 292
Query: 1125 PEEKSQE 1145
+E S++
Sbjct: 293 QKEGSKD 299
>ref|NP_001164213.1| WD repeat-containing protein 59 isoform 3 [Mus musculus].
Length = 974
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 4/187 (2%)
Frame = +3
Query: 597 VISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQVATANDTAVR 776
V S D ++ +WD G Q+K W+ ++ +AT++D VR
Sbjct: 122 VTSSVDTYIYIWDIKDTRKPTVALSAVA--GASQVK-----WNKKNA-NYLATSHDGDVR 173
Query: 777 GWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEE 956
WD R S AH + LD++P+ ++ A+ D VKFWD R+ + + L
Sbjct: 174 IWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPC 233
Query: 957 HSHWVWNVRYNHSHDQLVLT----ASSDSRVILSNMASISSEPFGHLVDDDDLSDQEERR 1124
VW RY + LV ++ ++L N + +++ + DD + + + RR
Sbjct: 234 QVP-VWKARYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRR 292
Query: 1125 PEEKSQE 1145
+E S++
Sbjct: 293 QKEGSKD 299
>ref|NP_067514.2| WD repeat and SOCS box-containing protein 2 [Mus musculus].
Length = 404
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +3
Query: 720 WSPHH------SCTQVATA-NDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCL 878
W+ HH SC +AT ND ++ W+ +T + + + H +VRDL F P+ L
Sbjct: 111 WARHHPQAPDVSCLILATGLNDGQIKIWEVQTGLLLLNL-SGHQDVVRDLSFTPSGSLIL 169
Query: 879 ASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMAS 1058
S D ++ WD K + ++ L H WV+ + L +A+ + V L +M S
Sbjct: 170 VSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSML-CSAAGEKSVFLWSMRS 228
>ref|NP_001155297.1| peroxisomal biogenesis factor 7 isoform 2 [Mus musculus].
Length = 292
Score = 50.1 bits (118), Expect = 4e-06
Identities = 34/133 (25%), Positives = 52/133 (39%)
Frame = +3
Query: 570 WEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQV 749
W P G + D L +WD Q + + W ++ V
Sbjct: 132 WSPHIPGCFASASGDQTLRIWDVKTTGVRIVIPAH-------QTEILSCDWCKYNENLVV 184
Query: 750 ATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKV 929
A D ++RGWD R + Q H +R + F+P LASC D V+FW+ K
Sbjct: 185 TGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKP 244
Query: 930 TEPVRTLEEHSHW 968
+ T+E H+ +
Sbjct: 245 DPLLETVEHHTEF 257
Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/112 (25%), Positives = 52/112 (46%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
WSPH + + D +R WD +T + + AH + D+ + + + DC
Sbjct: 132 WSPHIPGCFASASGDQTLRIWDVKTTG-VRIVIPAHQTEILSCDWCKYNENLVVTGAVDC 190
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMA 1055
++ WD R V +PV L H++ + V+++ H ++ + S D V N +
Sbjct: 191 SLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFS 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,517,557
Number of extensions: 1232837
Number of successful extensions: 8109
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7505
Number of HSP's successfully gapped: 13
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354996.1| PREDICTED: protein TSSC1-like [Sus scrofa]. 730 0.0
Alignment gi|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-lik... 69 6e-12
Alignment gi|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-lik... 68 1e-11
Alignment gi|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-lik... 68 1e-11
Alignment gi|XP_003353627.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CU... 58 1e-08
Alignment gi|XP_001926012.1| PREDICTED: WD repeat and SOCS box-containing... 51 1e-06
Alignment gi|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 re... 50 3e-06
Alignment gi|XP_001929004.1| PREDICTED: nucleoporin Nup43 [Sus scrofa]. 49 8e-06
>ref|XP_003354996.1| PREDICTED: protein TSSC1-like [Sus scrofa].
Length = 387
Score = 730 bits (1885), Expect = 0.0
Identities = 355/387 (91%), Positives = 356/387 (91%)
Frame = +3
Query: 147 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVL 326
MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQ KNVL
Sbjct: 1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVL 60
Query: 327 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 506
LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA
Sbjct: 61 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 120
Query: 507 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXX 686
HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWD
Sbjct: 121 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDLQESSSQALLASSASLE 180
Query: 687 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 866
GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK
Sbjct: 181 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 240
Query: 867 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 1046
QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS
Sbjct: 241 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 300
Query: 1047 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 1226
NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP
Sbjct: 301 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 360
Query: 1227 WLFASLNYDGRLVVNRVPRALKYRILL 1307
WLFASL+YDGRLVVNRVPRALKYRILL
Sbjct: 361 WLFASLSYDGRLVVNRVPRALKYRILL 387
>ref|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-like [Sus scrofa].
Length = 425
Score = 68.9 bits (167), Expect = 6e-12
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-like [Sus scrofa].
Length = 469
Score = 68.2 bits (165), Expect = 1e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 162 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 213
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 214 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 264
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 265 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 324
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 325 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 384
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 385 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 426
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 427 PNEPWVICSVSED 439
>ref|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-like isoform 1 [Sus scrofa].
Length = 425
Score = 68.2 bits (165), Expect = 1e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 118 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 169
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 170 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 220
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 221 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 280
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 281 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 340
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 341 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 382
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 383 PNEPWVICSVSED 395
>ref|XP_003353627.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor
10-like [Sus scrofa].
Length = 562
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
+SP S VA T V +D + I + AH V ++ F N+ + A+C DD
Sbjct: 178 YSPDGSVLTVA-CEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLF--ATCSDDT 234
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+ WD RK+ V TL H+ WV N+ Y+ ++ +L++T+ D VI+
Sbjct: 235 TIALWDLRKLNTKVCTLHGHTSWVKNIEYD-TNTRLLVTSGFDGNVII 281
>ref|XP_001926012.1| PREDICTED: WD repeat and SOCS box-containing protein 2 [Sus scrofa].
Length = 407
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +3
Query: 720 WSPHH------SCTQVATA-NDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCL 878
W+ HH SC +AT ND ++ W+ +T + + + H +VRDL F P+ L
Sbjct: 114 WARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNL-SGHQDVVRDLSFTPSGSLIL 172
Query: 879 ASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMAS 1058
S D ++ WD K + ++ L H WV+ + L +A+ + V L +M S
Sbjct: 173 VSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSML-CSAAGEKSVFLWSMRS 231
>ref|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 receptor-like [Sus
scrofa].
Length = 335
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/133 (25%), Positives = 52/133 (39%)
Frame = +3
Query: 570 WEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQV 749
W P G + D L +WD Q + + W ++ V
Sbjct: 163 WSPHIPGCFASASGDQTLRIWDVKTTGVRIVVPAH-------QAEILSCDWCKYNENLLV 215
Query: 750 ATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKV 929
A D ++RGWD R + Q H +R + F+P LASC D V+FW+ K
Sbjct: 216 TGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFYASVLASCSYDFTVRFWNFSKP 275
Query: 930 TEPVRTLEEHSHW 968
+ T+E H+ +
Sbjct: 276 NPLLETVEHHTEF 288
Score = 48.9 bits (115), Expect = 6e-06
Identities = 28/112 (25%), Positives = 52/112 (46%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
WSPH + + D +R WD +T + + AH + D+ + L + DC
Sbjct: 163 WSPHIPGCFASASGDQTLRIWDVKTTG-VRIVVPAHQAEILSCDWCKYNENLLVTGAVDC 221
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMA 1055
++ WD R V +PV L H++ + V+++ + ++ + S D V N +
Sbjct: 222 SLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFYASVLASCSYDFTVRFWNFS 273
>ref|XP_001929004.1| PREDICTED: nucleoporin Nup43 [Sus scrofa].
Length = 380
Score = 48.5 bits (114), Expect = 8e-06
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = +3
Query: 744 QVATANDTA-VRGWDTRTM----SQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVK 908
++ T N ++ WD R SQI + L +D +PN+Q+ +A+ G D +
Sbjct: 185 EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRAPL-HCVDRHPNQQHVVATGGQDGMLS 243
Query: 909 FWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSD 1028
WD R+ T PV L+ H +W V ++ S+ + T S D
Sbjct: 244 IWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSED 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,319,420
Number of extensions: 977714
Number of successful extensions: 7081
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6488
Number of HSP's successfully gapped: 9
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003301.1| protein TSSC1 [Homo sapiens]. 650 0.0
Alignment gi|NP_001128728.1| histone-binding protein RBBP4 isoform c [Hom... 69 1e-11
Alignment gi|NP_001128727.1| histone-binding protein RBBP4 isoform b [Hom... 69 1e-11
Alignment gi|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo s... 69 1e-11
Alignment gi|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo s... 68 2e-11
Alignment gi|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Hom... 68 2e-11
Alignment gi|NP_077321.3| DDB1- and CUL4-associated factor 10 [Homo sapie... 58 2e-08
Alignment gi|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens]. 53 7e-07
Alignment gi|NP_085058.3| WD repeat-containing protein 59 [Homo sapiens]. 52 1e-06
Alignment gi|NP_061109.1| WD repeat and SOCS box-containing protein 2 [Ho... 52 2e-06
>ref|NP_003301.1| protein TSSC1 [Homo sapiens].
Length = 387
Score = 650 bits (1678), Expect = 0.0
Identities = 308/387 (79%), Positives = 335/387 (86%)
Frame = +3
Query: 147 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQXXXXXXXXXXXXXXKNVL 326
MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQ KNVL
Sbjct: 1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVL 60
Query: 327 LHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAASPA 506
LH+AGEIWHISASPAD+GVL TCYN+T+DSKVLTCAAVWRMP ELE G HESP+D++S A
Sbjct: 61 LHQAGEIWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTA 120
Query: 507 HALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXX 686
LELLCHLD+ A G+ ACV WEP GDGK++ISLADNH+LLWD
Sbjct: 121 QTLELLCHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLE 180
Query: 687 GKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNK 866
GKGQLKFT+GRWSPHH+CTQVATANDT +RGWDTR+MSQIYCIENAHGQLVRDLDFNPNK
Sbjct: 181 GKGQLKFTSGRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNK 240
Query: 867 QYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILS 1046
QY LASCGDDC+VKFWDTR VTEPV+TLEEHSHWVWNVRYNHSHDQLVLT SSDSRVILS
Sbjct: 241 QYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILS 300
Query: 1047 NMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWAAADP 1226
NM SISSEPFGHLVDDDD+SDQE+ R EEKS+EP QD+VIATYEEHEDSVYAV+W++ADP
Sbjct: 301 NMVSISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSSADP 360
Query: 1227 WLFASLNYDGRLVVNRVPRALKYRILL 1307
WLFASL+YDGRLV+NRVPRALKY ILL
Sbjct: 361 WLFASLSYDGRLVINRVPRALKYHILL 387
>ref|NP_001128728.1| histone-binding protein RBBP4 isoform c [Homo sapiens].
Length = 390
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 84 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 135
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 136 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 186
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 187 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 246
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 247 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 306
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 307 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 348
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 349 PNEPWVICSVSEDNIMQV 366
>ref|NP_001128727.1| histone-binding protein RBBP4 isoform b [Homo sapiens].
Length = 424
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 118 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 169
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 170 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 220
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 221 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 280
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 281 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 340
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 341 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 382
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 383 PNEPWVICSVSEDNIMQV 400
>ref|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo sapiens].
Length = 425
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/318 (20%), Positives = 126/318 (39%), Gaps = 2/318 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + P++ +P G +P+
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIAT---KTPSSDVLVFDYT-KHPSKPDPSGECNPD---- 170
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W P G + + D+ + LWD
Sbjct: 171 -------LRLRGHQKEGYG--LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTRT--MSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR+ S+ +AH V L F
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + + E H ++ V+++ ++ ++ ++ +D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ PE+ PP+ ++ + H + W
Sbjct: 342 LNVWDLSKIG----------------EEQSPEDAEDGPPE--LLFIHGGHTAKISDFSWN 383
Query: 1215 AADPWLFASLNYDGRLVV 1268
+PW+ S++ D + V
Sbjct: 384 PNEPWVICSVSEDNIMQV 401
>ref|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo sapiens].
Length = 425
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 118 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 169
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 170 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 220
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 221 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 280
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 281 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 340
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 341 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 382
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 383 PNEPWVICSVSED 395
>ref|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Homo sapiens].
Length = 469
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 2/313 (0%)
Frame = +3
Query: 321 VLLHRAGEIWHISASPADKGVLATCYNKTADSKVLTCAAVWRMPAELEPGGHESPEDAAS 500
+ ++ GE+ P + ++AT KT S VL + PA+ +P G +P+
Sbjct: 162 IKINHEGEVNRARYMPQNPHIIAT---KTPSSDVLVFDYT-KHPAKPDPSGECNPD---- 213
Query: 501 PAHALELLCHLDHPARGSTACVAWEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXX 680
L H G ++W G + + D+ + LWD
Sbjct: 214 -------LRLRGHQKEGYG--LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 264
Query: 681 XXGKGQLKFTTGRWSPHHSCTQVATANDTAVRGWDTR--TMSQIYCIENAHGQLVRDLDF 854
W H + A+D + WDTR T S+ + +AH V L F
Sbjct: 265 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 324
Query: 855 NPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSR 1034
NP ++ LA+ D V WD R + + T E H ++ V ++ ++ ++ ++ +D R
Sbjct: 325 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 384
Query: 1035 VILSNMASISSEPFGHLVDDDDLSDQEERRPEEKSQEPPQDSVIATYEEHEDSVYAVEWA 1214
+ + +++ I EE+ E+ PP+ ++ + H + W
Sbjct: 385 LNVWDLSKIG----------------EEQSAEDAEDGPPE--LLFIHGGHTAKISDFSWN 426
Query: 1215 AADPWLFASLNYD 1253
+PW+ S++ D
Sbjct: 427 PNEPWVICSVSED 439
>ref|NP_077321.3| DDB1- and CUL4-associated factor 10 [Homo sapiens].
Length = 559
Score = 58.2 bits (139), Expect = 2e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
+SP S VA T V +D + I + AH V ++ F N+ + A+C DD
Sbjct: 176 YSPDGSVLTVA-CEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLF--ATCSDDT 232
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 1043
+ WD RK+ V TL H+ WV N+ Y+ ++ +L++T+ D VI+
Sbjct: 233 TIALWDLRKLNTKVCTLHGHTSWVKNIEYD-TNTRLLVTSGFDGNVII 279
>ref|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens].
Length = 323
Score = 52.8 bits (125), Expect = 7e-07
Identities = 38/165 (23%), Positives = 64/165 (38%)
Frame = +3
Query: 570 WEPAGDGKRVISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQV 749
W P G + D L +WD Q + + W ++ V
Sbjct: 163 WSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPAH-------QAEILSCDWCKYNENLLV 215
Query: 750 ATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKV 929
A D ++RGWD R + Q H +R + F+P LASC D V+FW+ K
Sbjct: 216 TGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKP 275
Query: 930 TEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMASIS 1064
+ T+E H+ + + ++ V S D + + + A ++
Sbjct: 276 DSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIKIYDPACLT 320
Score = 49.3 bits (116), Expect = 8e-06
Identities = 29/116 (25%), Positives = 52/116 (44%)
Frame = +3
Query: 720 WSPHHSCTQVATANDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDC 899
WSPH + + D +R WD + + + AH + D+ + L + DC
Sbjct: 163 WSPHIPGCFASASGDQTLRIWDVKAAG-VRIVIPAHQAEILSCDWCKYNENLLVTGAVDC 221
Query: 900 RVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMASISS 1067
++ WD R V +PV L H++ + V+++ H ++ + S D V N + S
Sbjct: 222 SLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDS 277
>ref|NP_085058.3| WD repeat-containing protein 59 [Homo sapiens].
Length = 974
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 4/187 (2%)
Frame = +3
Query: 597 VISLADNHLLLWDXXXXXXXXXXXXXXXXXGKGQLKFTTGRWSPHHSCTQVATANDTAVR 776
V S D ++ +WD G Q+K+ + +C +AT++D VR
Sbjct: 122 VTSSVDTYIYIWDIKDTRKPTVALSAVA--GASQVKWN----KKNANC--LATSHDGDVR 173
Query: 777 GWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCLASCGDDCRVKFWDTRKVTEPVRTLEE 956
WD R S AH + LD++P+ ++ LA+ D VKFWD R+ + + L
Sbjct: 174 IWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPC 233
Query: 957 HSHWVWNVRYNHSHDQLVLT----ASSDSRVILSNMASISSEPFGHLVDDDDLSDQEERR 1124
VW RY + LV ++ ++L N+ +++ + DD + + + R+
Sbjct: 234 QVP-VWKARYTPFSNGLVTVMVPQLRRENSLLLWNVFDLNTPVHTFVGHDDVVLEFQWRK 292
Query: 1125 PEEKSQE 1145
+E S++
Sbjct: 293 QKEGSKD 299
>ref|NP_061109.1| WD repeat and SOCS box-containing protein 2 [Homo sapiens].
Length = 404
Score = 51.6 bits (122), Expect = 2e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +3
Query: 720 WSPHH------SCTQVATA-NDTAVRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYCL 878
W+ HH SC +AT ND ++ W+ +T + + + H +VRDL F P+ L
Sbjct: 111 WARHHPQVPDVSCLVLATGLNDGQIKIWEVQTGLLLLNL-SGHQDVVRDLSFTPSGSLIL 169
Query: 879 ASCGDDCRVKFWDTRKVTEPVRTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMAS 1058
S D ++ WD K + ++ L H WV+ + L +A+ + V L +M S
Sbjct: 170 VSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSML-CSAAGEKSVFLWSMRS 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,392,967
Number of extensions: 1494444
Number of successful extensions: 10111
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9349
Number of HSP's successfully gapped: 13
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007610
(1322 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 363 2e-97
>Sscrofa_Chr03
|| Length = 144787322
Score = 363 bits (183), Expect = 2e-97
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 1136 gagccaggagcccccgcaggacagcgtcatcgccacctatgaggagcacgaggacagcgt 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140645076 gagccaggagcccccgcaggacagcgtcatcgccacctatgaggagcacgaggacagcgt 140645135
Query: 1196 gtacgccgtggagtgggccgcggccgacccctggctgttcgcctccctgaactacgacgg 1255
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140645136 gtacgccgtggagtgggccgcggccgacccctggctgttcgcctccctgagctacgacgg 140645195
Query: 1256 gaggctcgtcgtcaacagggtgcccagggcgctgaagtaccgcatcctgctctgaccgtg 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140645196 gaggctcgtcgtcaacagggtgcccagggcgctgaagtaccgcatcctgctctgaccgtg 140645255
Query: 1316 ggcagcc 1322
|||||||
Sbjct: 140645256 ggcagcc 140645262
Score = 345 bits (174), Expect = 4e-92
Identities = 188/190 (98%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 1 ggcgccggaagtgagccctaccgaagccggactgggctataaagattt-ccggttagacg 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 140570766 ggcgccggaagtgagccctaccgaagccggactgggctataaagattttccggttagacg 140570825
Query: 60 ccgcctgggctggagggaatgaatggatagtgagctgtgggcgcgccggctccgggggtc 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140570826 ccgcctgggctg-agggaatgaatggatagtgagctgtgggcgcgccggctccgggggtc 140570884
Query: 120 cgccttaggcgtgtgagcggccgcagcatggaggacgacgcgccggtgatctacggcctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140570885 cgccttaggcgtgtgagcggccgcagcatggaggacgacgcgccggtgatctacggcctg 140570944
Query: 180 gagttccagg 189
||||||||||
Sbjct: 140570945 gagttccagg 140570954
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 798 agccagatctactgcatcgagaatgcgcacggccagctggtacgggacctggacttcaac 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140643135 agccagatctactgcatcgagaatgcgcacggccagctggtacgggacctggacttcaac 140643194
Query: 858 cccaacaagcagtactgcctggccagctgcggggacgactgcagggtgaagttctgggac 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140643195 cccaacaagcagtactgcctggccagctgcggggacgactgcagggtgaagttctgggac 140643254
Query: 918 acccgcaaggtcacggagcccgtgaggaccctggaggagcactcgcactgg 968
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140643255 acccgcaaggtcacggagcccgtgaggaccctggaggagcactcgcactgg 140643305
Score = 329 bits (166), Expect = 2e-87
Identities = 169/170 (99%)
Strand = Plus / Plus
Query: 967 gggtgtggaacgtgcgctacaaccactcgcacgaccagctcgtcctcacggccagcagcg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140644316 gggtgtggaacgtgcgctacaaccactcgcacgaccagctcgtcctcacggccagcagcg 140644375
Query: 1027 acagcagggtcatcctgtccaacatggcgtccatctcctccgagcccttcggccacctgg 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140644376 acagcagggtcatcctgtccaacatggcgtccatctcctccgagcccttcggccacctgg 140644435
Query: 1087 tggacgacgacgacctgagtgaccaggaggagcgccgtccagaggagaag 1136
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 140644436 tggacgacgacgacctgagcgaccaggaggagcgccgtccagaggagaag 140644485
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 406 ctgcagacagcaaagtcctgacgtgcgccgcggtgtggaggatgcctgcggagctggagc 465
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 140617751 ctgcagacagcaaagtcctgacgtgcgctgcggtgtggaggatgcctgcggagctggagc 140617810
Query: 466 ccggcggccacgagtcccctgaggacgcagccagccctgcgcacgccctggagctgctct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140617811 ccggcggccacgagtcccctgaggacgcagccagccctgcgcacgccctggagctgctct 140617870
Query: 526 gccacctggaccacccggcccgcggcagcaccgcctg 562
|||||||||||||||||||||||||||||||||||||
Sbjct: 140617871 gccacctggaccacccggcccgcggcagcaccgcctg 140617907
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 662 gctggccagctcggcgtccctggaagggaagggacagctgaagttcacgacgggacggtg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140641120 gctggccagctcggcgtccctggaagggaagggacagctgaagttcacgacgggacggtg 140641179
Query: 722 gagcccgcatcacagctgcacccaggtggccacagcgaacgacacggccgtccgggggtg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140641180 gagcccgcatcacagctgcacccaggtggccacagcgaacgacacggccgtccgggggtg 140641239
Query: 782 ggacacgcggaccatgag 799
||||||||||||||||||
Sbjct: 140641240 ggacacgcggaccatgag 140641257
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 271 agatccacatcatagactttgacgatgagaacaacatcataaataaaaacgtgctcctcc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140586024 agatccacatcatagactttgacgatgagaacaacatcataaataaaaacgtgctcctcc 140586083
Query: 331 atcgggcgggcgagatctggcacatcagtgccagccctgcagacaaaggggtgctggcca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140586084 atcgggcgggcgagatctggcacatcagtgccagccctgcagacaaaggggtgctggcca 140586143
Query: 391 cctgctacaacaaga 405
|||||||||||||||
Sbjct: 140586144 cctgctacaacaaga 140586158
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 562 gtgtcgcgtgggagcccgcgggggacgggaagagagtcatctcgttggccgacaaccacc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140630243 gtgtcgcgtgggagcccgcgggggacgggaagagagtcatctcgttggccgacaaccacc 140630302
Query: 622 tcctgctgtgggacctgcaggagagctccagccaggctctg 662
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140630303 tcctgctgtgggacctgcaggagagctccagccaggctctg 140630343
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 186 caggcacgcgcgctcacacctcaaactgccgagacagatgccatccggtttttggttggg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140577046 caggcacgcgcgctcacacctcaaactgccgagacagatgccatccggtttttggttggg 140577105
Query: 246 acgcagtctctaaaatatgataatcag 272
|||||||||||||||||||||||||||
Sbjct: 140577106 acgcagtctctaaaatatgataatcag 140577132
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,733,522
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 9
Length of query: 1322
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1301
Effective length of database: 2,808,413,156
Effective search space: 3653745515956
Effective search space used: 3653745515956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)