Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098431.1| basic leucine zipper and W2 domain-containin... 562 e-164
Alignment gi|NP_001193542.1| basic leucine zipper and W2 domain-containin... 405 e-113
>ref|NP_001098431.1| basic leucine zipper and W2 domain-containing protein 2 [Bos taurus].
Length = 419
Score = 562 bits (1449), Expect(2) = e-164
Identities = 286/289 (98%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIR+YAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRSYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLG+GTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGSGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFK+WMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKSWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-164
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|NP_001193542.1| basic leucine zipper and W2 domain-containing protein 1 [Bos taurus].
Length = 419
Score = 405 bits (1041), Expect = e-113
Identities = 196/287 (68%), Positives = 249/287 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,429,730
Number of extensions: 801915
Number of successful extensions: 2576
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2568
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532484.2| PREDICTED: similar to basic leucine zipper and ... 567 e-166
Alignment gi|XP_862408.1| PREDICTED: similar to basic leucine zipper and ... 567 e-166
Alignment gi|XP_849107.1| PREDICTED: similar to basic leucine zipper and ... 407 e-114
Alignment gi|XP_536025.1| PREDICTED: similar to basic leucine zipper and ... 405 e-113
Alignment gi|XP_857961.1| PREDICTED: similar to basic leucine zipper and ... 402 e-112
Alignment gi|XP_862490.1| PREDICTED: similar to basic leucine zipper and ... 266 1e-75
Alignment gi|XP_862463.1| PREDICTED: similar to basic leucine zipper and ... 266 1e-75
Alignment gi|XP_862345.1| PREDICTED: similar to basic leucine zipper and ... 260 1e-69
Alignment gi|XP_850791.1| PREDICTED: similar to basic leucine zipper and ... 260 1e-69
Alignment gi|XP_862436.1| PREDICTED: similar to basic leucine zipper and ... 187 5e-52
>ref|XP_532484.2| PREDICTED: similar to basic leucine zipper and W2 domains 2 isoform 1
[Canis familiaris].
Length = 419
Score = 567 bits (1462), Expect(2) = e-166
Identities = 289/289 (100%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-166
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|XP_862408.1| PREDICTED: similar to basic leucine zipper and W2 domains 2 isoform 2
[Canis familiaris].
Length = 378
Score = 567 bits (1462), Expect(2) = e-166
Identities = 289/289 (100%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-166
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|XP_849107.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform 3
[Canis familiaris].
Length = 451
Score = 407 bits (1046), Expect = e-114
Identities = 199/293 (67%), Positives = 253/293 (86%), Gaps = 2/293 (0%)
Frame = +3
Query: 138 NFMN--KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTG 311
+FMN K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G
Sbjct: 31 SFMNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASG 90
Query: 312 SRLDYRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFN 491
++LDYRRYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFN
Sbjct: 91 AKLDYRRYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFN 147
Query: 492 KLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDS 671
KLIRRYKYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++
Sbjct: 148 KLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNEN 207
Query: 672 LVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTD 851
LVKEG++A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+
Sbjct: 208 LVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTE 267
Query: 852 AGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
AGLKELS+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 268 AGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 320
>ref|XP_536025.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform 2
[Canis familiaris].
Length = 419
Score = 405 bits (1041), Expect = e-113
Identities = 196/287 (68%), Positives = 249/287 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 288
>ref|XP_857961.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform 5
[Canis familiaris].
Length = 353
Score = 402 bits (1034), Expect = e-112
Identities = 195/286 (68%), Positives = 248/286 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDL 1007
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNI 287
>ref|XP_862490.1| PREDICTED: similar to basic leucine zipper and W2 domains 2 isoform 5
[Canis familiaris].
Length = 267
Score = 266 bits (679), Expect(2) = 1e-75
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = +3
Query: 600 MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL 779
MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL
Sbjct: 1 MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL 60
Query: 780 DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI 959
DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI
Sbjct: 61 DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI 120
Query: 960 KEVVLYVKEEMKRNDLP 1010
KEVVLYVKEEMKRNDLP
Sbjct: 121 KEVVLYVKEEMKRNDLP 137
Score = 37.0 bits (84), Expect(2) = 1e-75
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 139 TAVIGLLWTCIMNAVE 154
>ref|XP_862463.1| PREDICTED: similar to basic leucine zipper and W2 domains 2 isoform 4
[Canis familiaris].
Length = 267
Score = 266 bits (679), Expect(2) = 1e-75
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = +3
Query: 600 MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL 779
MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL
Sbjct: 1 MLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL 60
Query: 780 DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI 959
DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI
Sbjct: 61 DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPI 120
Query: 960 KEVVLYVKEEMKRNDLP 1010
KEVVLYVKEEMKRNDLP
Sbjct: 121 KEVVLYVKEEMKRNDLP 137
Score = 37.0 bits (84), Expect(2) = 1e-75
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 139 TAVIGLLWTCIMNAVE 154
>ref|XP_862345.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform
3 [Canis familiaris].
Length = 207
Score = 260 bits (665), Expect = 1e-69
Identities = 130/203 (64%), Positives = 166/203 (81%)
Frame = +3
Query: 351 DILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAF 530
DILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRYKYLEK F
Sbjct: 6 DILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGF 62
Query: 531 EDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVK 710
EDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG++A+FAVK
Sbjct: 63 EDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVK 122
Query: 711 LFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQ 890
LFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKELS+++R Q
Sbjct: 123 LFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQ 182
Query: 891 QSLGTRKELQKELQERLSQECPI 959
Q++G RK +K + R CP+
Sbjct: 183 QTIGARKNSRKNFKNR----CPV 201
>ref|XP_850791.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform
2 [Canis familiaris].
Length = 207
Score = 260 bits (665), Expect = 1e-69
Identities = 130/203 (64%), Positives = 166/203 (81%)
Frame = +3
Query: 351 DILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAF 530
DILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRYKYLEK F
Sbjct: 6 DILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGF 62
Query: 531 EDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVK 710
EDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG++A+FAVK
Sbjct: 63 EDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVK 122
Query: 711 LFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQ 890
LFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKELS+++R Q
Sbjct: 123 LFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQ 182
Query: 891 QSLGTRKELQKELQERLSQECPI 959
Q++G RK +K + R CP+
Sbjct: 183 QTIGARKNSRKNFKNR----CPV 201
>ref|XP_862436.1| PREDICTED: similar to basic leucine zipper and W2 domains 2 isoform 3
[Canis familiaris].
Length = 225
Score = 187 bits (474), Expect(2) = 5e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = +3
Query: 726 MAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGT 905
MAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGT
Sbjct: 1 MAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGT 60
Query: 906 RKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
RKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 61 RKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 95
Score = 37.0 bits (84), Expect(2) = 5e-52
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 97 TAVIGLLWTCIMNAVE 112
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,072,946
Number of extensions: 828063
Number of successful extensions: 2512
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2501
Number of HSP's successfully gapped: 17
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080116.2| basic leucine zipper and W2 domain-containing p... 565 e-165
Alignment gi|NP_080100.1| basic leucine zipper and W2 domain-containing p... 405 e-113
>ref|NP_080116.2| basic leucine zipper and W2 domain-containing protein 2 [Mus
musculus].
Length = 419
Score = 565 bits (1457), Expect(2) = e-165
Identities = 288/289 (99%), Positives = 288/289 (99%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSE EQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSEAEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-165
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|NP_080100.1| basic leucine zipper and W2 domain-containing protein 1 [Mus
musculus].
Length = 419
Score = 405 bits (1041), Expect = e-113
Identities = 196/287 (68%), Positives = 249/287 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 288
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,178,325
Number of extensions: 692970
Number of successful extensions: 2199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130234.2| PREDICTED: basic leucine zipper and W2 domai... 567 e-166
Alignment gi|XP_003359652.1| PREDICTED: basic leucine zipper and W2 domai... 407 e-114
Alignment gi|XP_001924523.1| PREDICTED: basic leucine zipper and W2 domai... 405 e-113
Alignment gi|XP_003360763.1| PREDICTED: basic leucine zipper and W2 domai... 157 7e-39
>ref|XP_003130234.2| PREDICTED: basic leucine zipper and W2 domain-containing protein
2-like [Sus scrofa].
Length = 520
Score = 567 bits (1462), Expect(2) = e-166
Identities = 289/289 (100%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-166
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|XP_003359652.1| PREDICTED: basic leucine zipper and W2 domain-containing protein 1
isoform 2 [Sus scrofa].
Length = 423
Score = 407 bits (1046), Expect = e-114
Identities = 199/293 (67%), Positives = 253/293 (86%), Gaps = 2/293 (0%)
Frame = +3
Query: 138 NFMN--KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTG 311
+FMN K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G
Sbjct: 3 SFMNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASG 62
Query: 312 SRLDYRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFN 491
++LDYRRYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFN
Sbjct: 63 AKLDYRRYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFN 119
Query: 492 KLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDS 671
KLIRRYKYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++
Sbjct: 120 KLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNEN 179
Query: 672 LVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTD 851
LVKEG++A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+
Sbjct: 180 LVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTE 239
Query: 852 AGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
AGLKELS+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 240 AGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 292
>ref|XP_001924523.1| PREDICTED: basic leucine zipper and W2 domain-containing protein 1
isoform 1 [Sus scrofa].
Length = 419
Score = 405 bits (1041), Expect = e-113
Identities = 196/287 (68%), Positives = 249/287 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 288
>ref|XP_003360763.1| PREDICTED: basic leucine zipper and W2 domain-containing protein
2-like [Sus scrofa].
Length = 95
Score = 157 bits (398), Expect = 7e-39
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSML 377
YRRYADTLFDILVAGSML
Sbjct: 61 YRRYADTLFDILVAGSML 78
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,122,780
Number of extensions: 510339
Number of successful extensions: 1685
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1681
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153239.1| basic leucine zipper and W2 domain-containin... 567 e-166
Alignment gi|NP_054757.1| basic leucine zipper and W2 domain-containing p... 567 e-166
Alignment gi|NP_001193998.1| basic leucine zipper and W2 domain-containin... 407 e-114
Alignment gi|NP_001193997.1| basic leucine zipper and W2 domain-containin... 407 e-114
Alignment gi|NP_001193996.1| basic leucine zipper and W2 domain-containin... 405 e-113
Alignment gi|NP_055485.2| basic leucine zipper and W2 domain-containing p... 402 e-112
>ref|NP_001153239.1| basic leucine zipper and W2 domain-containing protein 2 [Homo
sapiens].
Length = 419
Score = 567 bits (1462), Expect(2) = e-166
Identities = 289/289 (100%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-166
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|NP_054757.1| basic leucine zipper and W2 domain-containing protein 2 [Homo
sapiens].
Length = 419
Score = 567 bits (1462), Expect(2) = e-166
Identities = 289/289 (100%), Positives = 289/289 (100%)
Frame = +3
Query: 144 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 323
MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD
Sbjct: 1 MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLD 60
Query: 324 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 503
YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR
Sbjct: 61 YRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIR 120
Query: 504 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 683
RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE
Sbjct: 121 RYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKE 180
Query: 684 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 863
GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK
Sbjct: 181 GIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLK 240
Query: 864 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP
Sbjct: 241 ELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 289
Score = 37.0 bits (84), Expect(2) = e-166
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1013 TAVIGLLWTCIMNAVE 1060
TAVIGLLWTCIMNAVE
Sbjct: 291 TAVIGLLWTCIMNAVE 306
>ref|NP_001193998.1| basic leucine zipper and W2 domain-containing protein 1 isoform 3
[Homo sapiens].
Length = 423
Score = 407 bits (1046), Expect = e-114
Identities = 199/293 (67%), Positives = 253/293 (86%), Gaps = 2/293 (0%)
Frame = +3
Query: 138 NFMN--KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTG 311
+FMN K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G
Sbjct: 3 SFMNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASG 62
Query: 312 SRLDYRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFN 491
++LDYRRYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFN
Sbjct: 63 AKLDYRRYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFN 119
Query: 492 KLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDS 671
KLIRRYKYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++
Sbjct: 120 KLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNEN 179
Query: 672 LVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTD 851
LVKEG++A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+
Sbjct: 180 LVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTE 239
Query: 852 AGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
AGLKELS+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 240 AGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 292
>ref|NP_001193997.1| basic leucine zipper and W2 domain-containing protein 1 isoform 2
[Homo sapiens].
Length = 451
Score = 407 bits (1046), Expect = e-114
Identities = 199/293 (67%), Positives = 253/293 (86%), Gaps = 2/293 (0%)
Frame = +3
Query: 138 NFMN--KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTG 311
+FMN K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G
Sbjct: 31 SFMNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASG 90
Query: 312 SRLDYRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFN 491
++LDYRRYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFN
Sbjct: 91 AKLDYRRYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFN 147
Query: 492 KLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDS 671
KLIRRYKYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++
Sbjct: 148 KLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNEN 207
Query: 672 LVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTD 851
LVKEG++A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+
Sbjct: 208 LVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTE 267
Query: 852 AGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
AGLKELS+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 268 AGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 320
>ref|NP_001193996.1| basic leucine zipper and W2 domain-containing protein 1 isoform 1
[Homo sapiens].
Length = 419
Score = 405 bits (1041), Expect = e-113
Identities = 196/287 (68%), Positives = 249/287 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLP 1010
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++P
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIP 288
>ref|NP_055485.2| basic leucine zipper and W2 domain-containing protein 1 isoform 4
[Homo sapiens].
Length = 353
Score = 402 bits (1034), Expect = e-112
Identities = 195/286 (68%), Positives = 248/286 (86%)
Frame = +3
Query: 150 KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYR 329
K QKP L+GQRFKTRKRDEKE+F+PT F+D ++QGL E G DLEAVAKFLD++G++LDYR
Sbjct: 5 KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYR 64
Query: 330 RYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRY 509
RYA+TLFDILVAG MLAPGGT DD +T + CVF+A ED ET++ +AQVFNKLIRRY
Sbjct: 65 RYAETLFDILVAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRY 121
Query: 510 KYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGI 689
KYLEK FEDE+KKLLLFLK FSE+E+ KLAML+G+LL NGTL A+IL SL+ ++LVKEG+
Sbjct: 122 KYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGV 181
Query: 690 AASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKEL 869
+A+FAVKLFK+W+ EKD N+V +SLRK ++D RL+ELFP N+QSV+HF KYFT+AGLKEL
Sbjct: 182 SAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKEL 241
Query: 870 SDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDL 1007
S+++R QQ++G RKELQKELQE++S+ P K+++LYVKEEMK+N++
Sbjct: 242 SEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNI 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,437,823
Number of extensions: 818744
Number of successful extensions: 2673
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2658
Number of HSP's successfully gapped: 8
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007612
(1062 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892750.2| Sus scrofa unplaced genomic scaffold ChrUScaf635 353 1e-94
Sscrofa_Chr09 353 1e-94
>gb|GL892750.2| Sus scrofa unplaced genomic scaffold ChrUScaf635
Length = 261677
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 201 gatgaaaaagagaaattcgaacccacagtcttcagggatacactcgtccaggggcttaat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 gatgaaaaagagaaattcgaacccacagtcttcagggatacactcgtccaggggcttaat 1552
Query: 261 gaagctggtgatgaccttgaagctgtagccaagtttctggactccacaggctcaagatta 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 gaagctggtgatgaccttgaagctgtagccaagtttctggactccacaggctcaagatta 1492
Query: 321 gattatcgtcgctatgcagacacactcttcgatatcctggtggctggcagtatgcttg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 gattatcgtcgctatgcagacacactcttcgatatcctggtggctggcagtatgcttg 1434
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 134 cagaaattttatgaataagcatcagaagccagtgctaacaggccagcggttcaaaactcg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10592 cagaaattttatgaataagcatcagaagccagtgctaacaggccagcggttcaaaactcg 10533
Query: 194 gaaaaggg 201
||||||||
Sbjct: 10532 gaaaaggg 10525
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 92 gccgcagcccccagcctcgcgcgtcgccgctacctcctcggacag 136
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28089 gccgcagcccccagcctcgcgcgtcgccgctacctcctcggacag 28045
>Sscrofa_Chr09
|| Length = 153670197
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 201 gatgaaaaagagaaattcgaacccacagtcttcagggatacactcgtccaggggcttaat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94788149 gatgaaaaagagaaattcgaacccacagtcttcagggatacactcgtccaggggcttaat 94788208
Query: 261 gaagctggtgatgaccttgaagctgtagccaagtttctggactccacaggctcaagatta 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94788209 gaagctggtgatgaccttgaagctgtagccaagtttctggactccacaggctcaagatta 94788268
Query: 321 gattatcgtcgctatgcagacacactcttcgatatcctggtggctggcagtatgcttg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94788269 gattatcgtcgctatgcagacacactcttcgatatcctggtggctggcagtatgcttg 94788326
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 795 gaactctttccagttaacaggcagagtgtggatcattttgctaaatacttcactgacgca 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94808582 gaactctttccagttaacaggcagagtgtggatcattttgctaaatacttcactgacgca 94808641
Query: 855 ggtctgaaggagctttctgacttcctcagagtccagcagtccctgggcaccaggaaggag 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94808642 ggtctgaaggagctttctgacttcctcagagtccagcagtccctgggcaccaggaaggag 94808701
Query: 915 ctgcagaaggagctccaagagcgtctttctcaggaatgccccatcaaggaggtgg 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94808702 ctgcagaaggagctccaagagcgtctttctcaggaatgccccatcaaggaggtgg 94808756
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 547 agcttctcctcttccttaaagccttttccgaaacagagcagacaaagttggcaatgctat 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94800588 agcttctcctcttccttaaagccttttccgaaacagagcagacaaagttggcaatgctat 94800647
Query: 607 cggggattctgctgggcaacggcacccttcctgccaccatcctcaccagtcttttcactg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94800648 cggggattctgctgggcaacggcacccttcctgccaccatcctcaccagtcttttcactg 94800707
Query: 667 acagcttagtcaaagaagg 685
|||||||||||||||||||
Sbjct: 94800708 acagcttagtcaaagaagg 94800726
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 683 aggcattgcagcctcatttgctgtcaagctttttaaagcatggatggcagaaaaagatgc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94803969 aggcattgcagcctcatttgctgtcaagctttttaaagcatggatggcagaaaaagatgc 94804028
Query: 743 caactctgttacctcctctttgagaaaagccaacttagacaagaggctgcttg 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94804029 caactctgttacctcctctttgagaaaagccaacttagacaagaggctgcttg 94804081
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 378 gcccctggaggaacacgcatagatgatggtgacaagaccaagatgaccaaccactgtgtg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94794005 gcccctggaggaacacgcatagatgatggtgacaagaccaagatgaccaaccactgtgtg 94794064
Query: 438 ttttcagcaaatgaagatcatgaaaccatccgaaactatgctcaggt 484
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94794065 ttttcagcaaatgaagatcatgaaaccatccgaaactatgctcaggt 94794111
Score = 182 bits (92), Expect = 3e-43
Identities = 99/100 (99%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 964 aggtggtgctctacgttaaagaagaaatgaagaggaatgatcttccg-agacagcggtga 1022
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 94810456 aggtggtgctctacgttaaagaagaaatgaagaggaatgatcttccggagacagcggtga 94810515
Query: 1023 ttggactcctatggacctgtatcatgaacgctgtggagtg 1062
||||||||||||||||||||||||||||||||||||||||
Sbjct: 94810516 ttggactcctatggacctgtatcatgaacgctgtggagtg 94810555
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 134 cagaaattttatgaataagcatcagaagccagtgctaacaggccagcggttcaaaactcg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94778684 cagaaattttatgaataagcatcagaagccagtgctaacaggccagcggttcaaaactcg 94778743
Query: 194 gaaaaggg 201
||||||||
Sbjct: 94778744 gaaaaggg 94778751
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 481 aggtcttcaataagctcatcaggagatacaaatatttggaaaaggcatttgaggatgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94796387 aggtcttcaataagctcatcaggagatacaaatatttggaaaaggcatttgaggatgaaa 94796446
Query: 541 tgaaaaag 548
||||||||
Sbjct: 94796447 tgaaaaag 94796454
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,599,333
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 11
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)