Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029442.1| tetraspanin-1 [Bos taurus]. 298 1e-80
Alignment gi|NP_001074389.1| tetraspanin-18 [Bos taurus]. 68 2e-11
Alignment gi|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus]. 59 1e-08
Alignment gi|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus]. 59 1e-08
Alignment gi|NP_001095322.1| tetraspanin-4 [Bos taurus]. 58 2e-08
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 55 1e-07
Alignment gi|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos... 55 1e-07
Alignment gi|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos... 55 1e-07
Alignment gi|NP_001029404.1| leukocyte surface antigen CD53 [Bos taurus]. 54 4e-07
Alignment gi|XP_001257028.2| PREDICTED: transmembrane 4 superfamily membe... 54 4e-07
>ref|NP_001029442.1| tetraspanin-1 [Bos taurus].
Length = 241
Score = 298 bits (762), Expect = 1e-80
Identities = 147/241 (60%), Positives = 164/241 (68%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M CF+FIK +MILFN+LIFLCGAALLAVGIWVSVDGPSF+KIFGP+SSSAMQFVNVGY
Sbjct: 1 MGCFNFIKVMMILFNMLIFLCGAALLAVGIWVSVDGPSFVKIFGPMSSSAMQFVNVGYFL 60
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
CYGAQTE+KCALM YT++AE+FLT
Sbjct: 61 IAAGAVLFALGFLGCYGAQTESKCALMTFFFILLLIFIAEVAAAVVALVYTTLAENFLTA 120
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN 673
+VVP IKK+YGSQKDFTQVWNSTM GLKCCGF NYTDFEGSPY +N FPPYCC+D N
Sbjct: 121 VVVPNIKKEYGSQKDFTQVWNSTMAGLKCCGFTNYTDFEGSPYVRKNGTFPPYCCYDSVN 180
Query: 674 GTAVEPCTRDEAQNKTVQGCFNQLLYDIRTNXXXXXXXXXXXXXXXXXXMIVSMYLYCNL 853
+ +EPC A N +VQGCF QLLYDIRTN MIVSMYLYCNL
Sbjct: 181 NSFMEPCNNFTAHNMSVQGCFKQLLYDIRTNAVTVGGVAAGIGGLELAAMIVSMYLYCNL 240
Query: 854 K 856
+
Sbjct: 241 E 241
>ref|NP_001074389.1| tetraspanin-18 [Bos taurus].
Length = 249
Score = 68.2 bits (165), Expect = 2e-11
Identities = 62/223 (27%), Positives = 85/223 (38%), Gaps = 15/223 (6%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C S +K +M +FN IFL GA LL +GIWV VD F +I ++ + Y
Sbjct: 5 CLSCMKYLMFVFNFFIFLGGACLLGIGIWVMVDPTGFREIV----AANPLLITGAYILLA 60
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYT-SMAEHFLTLL 496
C GA ENKC L+ + ++ F T
Sbjct: 61 MGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRGNLTREFFT-- 118
Query: 497 VVPAIKKDYGSQKD---FTQVWNSTMEGLKCCGFNNYTDFEGSPYY----TENKVFPPYC 655
+ K Y D F+ WNS M CCG N DF+ + + ++ P C
Sbjct: 119 --KELTKHYQGSNDTDVFSATWNSVMITFGCCGVNGPEDFKYASVFRLLTLDSDEVPEAC 176
Query: 656 C-FDPGNGTAV----EPCT--RDEAQNKTVQGCFNQLLYDIRT 763
C +P + V E C RD NK QGC+ +L T
Sbjct: 177 CRREPQSRDGVLLSREECLLGRDLFLNK--QGCYTVILNAFET 217
>ref|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 58.5 bits (140), Expect = 1e-08
Identities = 61/242 (25%), Positives = 85/242 (35%), Gaps = 11/242 (4%)
Frame = +2
Query: 53 PRGSCPLWSAADPSFRTHYREPPAGAAMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVS 232
P+GS + D SF A C +K +M LFNL+ +LCG LL VGIW+S
Sbjct: 67 PKGSKYVVFYLDLSFVFLLEFKKCNMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLS 126
Query: 233 VDGPSFMKIFG--PLSSSAMQFVNVGYXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXX 406
V +F P S+A + +G C GA EN+C L+
Sbjct: 127 VSQGNFATFSPSFPSLSAANLVIAIG-------TIVMVTGFLGCLGAIKENRCLLLSFFI 179
Query: 407 XXXXXXXXXXXXXXXXXXYTSMAEHFLTLLVVPAIKKD-------YGSQKD--FTQVWNS 559
Y V KKD Y S+ + WN
Sbjct: 180 VLLIILLAELILIILFFVYMDK--------VNENAKKDLKEGLLLYNSENNVGLKNAWNI 231
Query: 560 TMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGNGTAVEPCTRDEAQNKTVQGCFN 739
+ CCG +Y D+ EN V P CC + G C ++ GC+
Sbjct: 232 IQAEMHCCGVTDYKDW--FSVLGENTV-PDRCCMENSQG-----CGQNNTTLVWKTGCYE 283
Query: 740 QL 745
++
Sbjct: 284 KV 285
>ref|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 58.5 bits (140), Expect = 1e-08
Identities = 61/242 (25%), Positives = 85/242 (35%), Gaps = 11/242 (4%)
Frame = +2
Query: 53 PRGSCPLWSAADPSFRTHYREPPAGAAMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVS 232
P+GS + D SF A C +K +M LFNL+ +LCG LL VGIW+S
Sbjct: 67 PKGSKYVVFYLDLSFVFLLEFKKCNMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLS 126
Query: 233 VDGPSFMKIFG--PLSSSAMQFVNVGYXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXX 406
V +F P S+A + +G C GA EN+C L+
Sbjct: 127 VSQGNFATFSPSFPSLSAANLVIAIG-------TIVMVTGFLGCLGAIKENRCLLLSFFI 179
Query: 407 XXXXXXXXXXXXXXXXXXYTSMAEHFLTLLVVPAIKKD-------YGSQKD--FTQVWNS 559
Y V KKD Y S+ + WN
Sbjct: 180 VLLIILLAELILIILFFVYMDK--------VNENAKKDLKEGLLLYNSENNVGLKNAWNI 231
Query: 560 TMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGNGTAVEPCTRDEAQNKTVQGCFN 739
+ CCG +Y D+ EN V P CC + G C ++ GC+
Sbjct: 232 IQAEMHCCGVTDYKDW--FSVLGENTV-PDRCCMENSQG-----CGQNNTTLVWKTGCYE 283
Query: 740 QL 745
++
Sbjct: 284 KV 285
>ref|NP_001095322.1| tetraspanin-4 [Bos taurus].
Length = 238
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ +F + SS+ ++
Sbjct: 2 ARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIVTGAFVMAIGFVGCIGAIKENKCLLLTFFVALLLVFLLEACITILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+ + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 RDLKKGLHL-YGTPGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 55.5 bits (132), Expect = 1e-07
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 2/175 (1%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C K + LFNLL F+ GA +L G+W+ VD SF+ I L +S+ F Y
Sbjct: 5 CIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISI---LQTSSTSFKVAAYVFIS 61
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLV 499
C GA E +C L M + + +V
Sbjct: 62 VGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIV 121
Query: 500 VPAIKK-DYGSQKDFTQVWNSTMEGLKCCGFNNYTDF-EGSPYYTENKVFPPYCC 658
I GS + + W+ +KCCG+ +Y ++ E + + P C
Sbjct: 122 TKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSC 176
>ref|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos taurus].
Length = 268
Score = 55.5 bits (132), Expect = 1e-07
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 2/175 (1%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C K + LFNLL F+ GA +L G+W+ VD SF+ I L +S+ F Y
Sbjct: 5 CIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISI---LQTSSTSFKVAAYVFIS 61
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLV 499
C GA E +C L M + + +V
Sbjct: 62 VGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIV 121
Query: 500 VPAIKK-DYGSQKDFTQVWNSTMEGLKCCGFNNYTDF-EGSPYYTENKVFPPYCC 658
I GS + + W+ +KCCG+ +Y ++ E + + P C
Sbjct: 122 TKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSC 176
>ref|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos taurus].
Length = 268
Score = 55.5 bits (132), Expect = 1e-07
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 2/175 (1%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C K + LFNLL F+ GA +L G+W+ VD SF+ I L +S+ F Y
Sbjct: 5 CIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISI---LQTSSTSFKVAAYVFIS 61
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLV 499
C GA E +C L M + + +V
Sbjct: 62 VGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIV 121
Query: 500 VPAIKK-DYGSQKDFTQVWNSTMEGLKCCGFNNYTDF-EGSPYYTENKVFPPYCC 658
I GS + + W+ +KCCG+ +Y ++ E + + P C
Sbjct: 122 TKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSC 176
>ref|NP_001029404.1| leukocyte surface antigen CD53 [Bos taurus].
Length = 219
Score = 53.5 bits (127), Expect = 4e-07
Identities = 37/162 (22%), Positives = 61/162 (37%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M +K V+ FNL+ + CG +L +GI++ + F +F L S + +G
Sbjct: 3 MSSLKLLKFVLFFFNLIFWFCGCCILGLGIYLLIHS-KFGVLFHNLPS-----LTLGNVL 56
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
C G+ ENKC LM Y + ++
Sbjct: 57 VIVGSVIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLKEYVAE 116
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSP 619
+ +I++ Y S W+S L+CCG N +D+ P
Sbjct: 117 GLTESIQR-YNSDNSTKAAWDSIQSFLQCCGVNGTSDWTSGP 157
>ref|XP_001257028.2| PREDICTED: transmembrane 4 superfamily member 16-like, partial [Bos
taurus].
Length = 112
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 509 IKKDYGSQK---DFTQVWNSTMEGLKCCGFNNYTDFEGSPY-YTENKVFPPYCCFDPG 670
++K+Y K D++ WN ME LKCCG NYTDF GS + +P CC PG
Sbjct: 38 LRKNYRGYKEPDDYSMRWNLVMEKLKCCGVKNYTDFSGSSFERVTGHTYPRCCCKSPG 95
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,980,893
Number of extensions: 1382180
Number of successful extensions: 7014
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6827
Number of HSP's successfully gapped: 10
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532594.1| PREDICTED: similar to Tetraspanin-1 (Tspan-1) (... 283 2e-76
Alignment gi|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18)... 67 4e-11
Alignment gi|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (... 67 5e-11
Alignment gi|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible m... 54 3e-07
Alignment gi|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (T... 50 4e-06
Alignment gi|XP_852492.1| PREDICTED: similar to CD53 antigen isoform 1 [C... 50 6e-06
>ref|XP_532594.1| PREDICTED: similar to Tetraspanin-1 (Tspan-1) (Tetraspan NET-1)
(Tetraspanin TM4-C) [Canis familiaris].
Length = 307
Score = 283 bits (725), Expect = 2e-76
Identities = 139/222 (62%), Positives = 151/222 (68%)
Frame = +2
Query: 191 LCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXXXXXXXXXXXXXXCYGAQ 370
LCG ALLAVGIWVSVDGPSF+KIFGPLSSSAMQFVNVGY CYGA
Sbjct: 86 LCGVALLAVGIWVSVDGPSFLKIFGPLSSSAMQFVNVGYFLIAAGAILFALGFLGCYGAH 145
Query: 371 TENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLVVPAIKKDYGSQKDFTQV 550
+ENKCALMM YT+MAEHFLTLLVVPAIK+DYGSQKDFTQV
Sbjct: 146 SENKCALMMFFLILLLIFIAEVAAAVVALVYTTMAEHFLTLLVVPAIKQDYGSQKDFTQV 205
Query: 551 WNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGNGTAVEPCTRDEAQNKTVQG 730
WNSTM GL CCGFNNYTDFEGSPY+ +N FPPYCC + GNGTA E CT + A++ VQG
Sbjct: 206 WNSTMAGLGCCGFNNYTDFEGSPYFLKNHTFPPYCCSNSGNGTATEACTEERAKDNIVQG 265
Query: 731 CFNQLLYDIRTNXXXXXXXXXXXXXXXXXXMIVSMYLYCNLK 856
CF+QLLYD+R N MIVSMYLYCNLK
Sbjct: 266 CFSQLLYDLRANAVTVGGVAAGIGALELAAMIVSMYLYCNLK 307
>ref|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18) [Canis familiaris].
Length = 248
Score = 67.0 bits (162), Expect = 4e-11
Identities = 61/222 (27%), Positives = 81/222 (36%), Gaps = 14/222 (6%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C S +K +M +FN IFL GA LL +G+WV VD F +I ++ + Y
Sbjct: 5 CLSCMKYLMFVFNFFIFLGGACLLGIGVWVMVDPTGFREIV----AANPLLITGAYILLA 60
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLV 499
C GA ENKC L+ + E+
Sbjct: 61 MGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIF---RENLTRESF 117
Query: 500 VPAIKKDYGSQKD---FTQVWNSTMEGLKCCGFNNYTDFEGSPYY----TENKVFPPYCC 658
+ K Y D F+ WNS M CCG N DF + + T + P CC
Sbjct: 118 TKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFRFASVFRLLTTGSDEVPEACC 177
Query: 659 -FDPGNGTAV----EPCT--RDEAQNKTVQGCFNQLLYDIRT 763
+P V E C RD NK QGC+ +L T
Sbjct: 178 RREPQTRDGVLLSREECLLGRDLFVNK--QGCYTVILNTFET 217
>ref|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
[Canis familiaris].
Length = 330
Score = 66.6 bits (161), Expect = 5e-11
Identities = 61/234 (26%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Frame = +2
Query: 53 PRGSCPLWSAADPSFRTHYREPPAGAAMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVS 232
P+GS + D SF A C +K +M LFNL+ +LCG LL VGIW+S
Sbjct: 67 PKGSKYVVFYLDLSFVFLLEFKKCNMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLS 126
Query: 233 VDGPSFMKIFG--PLSSSAMQFVNVGYXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXX 406
V +F P S+A + +G C GA ENKC L+
Sbjct: 127 VSQGNFATFSPSFPSLSAANLVIAIG-------TIVMVTGFLGCLGAIKENKCLLLSFFI 179
Query: 407 XXXXXXXXXXXXXXXXXXY-TSMAEHFLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCC 583
Y + E+ L + + + WN ++CC
Sbjct: 180 VLLIILLAELILLILFFVYMDKVNENARKDLKEGLLLYNTENNVGLKNAWNIIQAEMRCC 239
Query: 584 GFNNYTDFEGSPYYTENKVFPPYCCFDPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
G +YTD+ P EN V P CC + G C R+ GC+ ++
Sbjct: 240 GVTDYTDW--YPVLGENMV-PDRCCMENSQG-----CGRNTTTPLWRTGCYEKV 285
>ref|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible membrane protein R2)
(C33 antigen) (IA4) (Metastasis suppressor Kangai 1)
(Suppressor of tumorigenicity-6) (Tetraspanin-27)
(Tspan-27) [Canis familiaris].
Length = 455
Score = 53.9 bits (128), Expect = 3e-07
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSS----AMQFVNVGY 307
C K + LFNLL F+ GA +L G+W+ D SF+ + S+S A F+ VG
Sbjct: 196 CIKVTKYFLFLFNLLFFILGAVILGFGVWILADRSSFISVLQTSSNSLKVGACVFIGVG- 254
Query: 308 XXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFL 487
C GA E +C L + T + +
Sbjct: 255 ------AVTMFMGFLGCIGAIKEVRCLLGLYFAFLLLMLIVQVAAGVLFYFSTGKLKQEM 308
Query: 488 TLLVVPAIKKDY--GSQKDFTQVWNSTMEGLKCCG---FNNYTD 604
+V+ I +DY G + + W+ ++CCG F N+TD
Sbjct: 309 GSIVMKLI-QDYKDGQEDRLQEAWDYVQAQVRCCGWASFYNWTD 351
>ref|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (Tetraspanin-26)
(Tspan-26) isoform 1 [Canis familiaris].
Length = 281
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 2/167 (1%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C S IK ++ +FNL F+ G+ + GIW+ +D SF+ G LS +Q +
Sbjct: 7 CLSLIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVG-LSFIPLQIWSKA--LAI 63
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLV 499
C GA E +C L + E + +V
Sbjct: 64 SGILTMGLALLGCVGALKELRCLLGLYFGVLLLLFATQITLGILISTQRMRLERRVKDIV 123
Query: 500 VPAIKKDYGSQKDFT--QVWNSTMEGLKCCGFNNYTDFEGSPYYTEN 634
+ I+ + ++ + W+ L+CCG+N+ D+ G P + N
Sbjct: 124 METIQNYHSRPEESAAEESWDYVQFQLRCCGWNSPRDWFGIPSLSSN 170
>ref|XP_852492.1| PREDICTED: similar to CD53 antigen isoform 1 [Canis familiaris].
Length = 215
Score = 49.7 bits (117), Expect = 6e-06
Identities = 39/178 (21%), Positives = 60/178 (33%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M +K V+ FNLL + CG +L GI+ + + + + +G
Sbjct: 3 MSGLKLLKYVLFFFNLLFWFCGCCILGFGIYFLIHN----------NFRLLLSLTLGNVL 52
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
C G+ ENKC LM Y +++
Sbjct: 53 VIVGSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNDYVSE 112
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDP 667
+ +IK+ Y W+S L+CCG N +D+ G P P C DP
Sbjct: 113 SLTDSIKQ-YHLDNSTRATWDSIQSVLQCCGVNGTSDWNGHP--------PKSCPSDP 161
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,905,656
Number of extensions: 1406416
Number of successful extensions: 6777
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6635
Number of HSP's successfully gapped: 6
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598442.1| tetraspanin-1 [Mus musculus]. 278 7e-75
Alignment gi|NP_899003.1| tetraspanin-18 [Mus musculus]. 68 1e-11
Alignment gi|NP_780623.1| tetraspanin-9 [Mus musculus]. 65 1e-10
Alignment gi|NP_444312.1| tetraspanin-4 [Mus musculus]. 58 1e-08
Alignment gi|NP_031677.1| leukocyte surface antigen CD53 [Mus musculus]. 51 2e-06
>ref|NP_598442.1| tetraspanin-1 [Mus musculus].
Length = 240
Score = 278 bits (711), Expect = 7e-75
Identities = 140/241 (58%), Positives = 159/241 (65%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M+CF FIK +M LFNLLIFLCGAALLAVGIWVSVDG SF+K+FG LSSSAMQFVNVGY
Sbjct: 1 MQCFKFIKVMMFLFNLLIFLCGAALLAVGIWVSVDGTSFLKVFGSLSSSAMQFVNVGYFL 60
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
CYGA +ENKC LMM YT++AE FLTL
Sbjct: 61 IAAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIAGAVVALVYTTLAEQFLTL 120
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN 673
LVVPAI+KDYG Q DFTQVWN+TME L CCGFNNYTDF S + ENKVFPP CC +PGN
Sbjct: 121 LVVPAIEKDYGYQTDFTQVWNTTMEELHCCGFNNYTDFNASRFVKENKVFPPPCCANPGN 180
Query: 674 GTAVEPCTRDEAQNKTVQGCFNQLLYDIRTNXXXXXXXXXXXXXXXXXXMIVSMYLYCNL 853
T VEPCT ++A++ VQGCF ++L+ IR N M+VSMYLYCNL
Sbjct: 181 HT-VEPCTEEKAKSMKVQGCFKEILHRIRANAVTVGGVAVGVAALELAAMVVSMYLYCNL 239
Query: 854 K 856
K
Sbjct: 240 K 240
>ref|NP_899003.1| tetraspanin-18 [Mus musculus].
Length = 248
Score = 68.2 bits (165), Expect = 1e-11
Identities = 60/224 (26%), Positives = 81/224 (36%), Gaps = 16/224 (7%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIF--GPLSSSAMQFVNVGYXX 313
C S +K +M +FN +FL GA LL VGIWV VD F +I PL ++ Y
Sbjct: 5 CLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTG------AYIV 58
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
C GA EN+C L+ + EH
Sbjct: 59 LAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIF---REHLTRE 115
Query: 494 LVVPAIKKDYGSQKD---FTQVWNSTMEGLKCCGFNNYTDFEGSPYY----TENKVFPPY 652
+ K Y D F+ WNS M CCG N DF+ + + + + P
Sbjct: 116 FFTKELTKHYQGDNDTDVFSATWNSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPKA 175
Query: 653 CCFDPGNGTAVEPCTRDEAQ-------NKTVQGCFNQLLYDIRT 763
CC +R+E Q NK QGC+ +L T
Sbjct: 176 CCRREPQTRDGVVLSREECQLGRNPFINK--QGCYTVILNTFET 217
>ref|NP_780623.1| tetraspanin-9 [Mus musculus].
Length = 239
Score = 65.1 bits (157), Expect = 1e-10
Identities = 55/208 (26%), Positives = 78/208 (37%), Gaps = 3/208 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFG--PLSSSAMQFVNVG 304
A C +K M LFNL+ +LCG LL VGIW+SV +F P S+A + +G
Sbjct: 2 ARGCLCCLKYTMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIG 61
Query: 305 YXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEH 481
C GA ENKC L+ Y + E+
Sbjct: 62 -------TIVMVTGFLGCLGAIKENKCLLLSFFIVLLIILLAELILIILFFVYMDKVNEN 114
Query: 482 FLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCF 661
L + + + WN ++CCG +YTD+ P EN V P CC
Sbjct: 115 AKQDLKEGLLLYNTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTV-PDRCCM 171
Query: 662 DPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
+ G C R+ GC+ ++
Sbjct: 172 ENSQG-----CGRNSTTPLWRTGCYEKV 194
>ref|NP_444312.1| tetraspanin-4 [Mus musculus].
Length = 238
Score = 58.2 bits (139), Expect = 1e-08
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ +F + SS+ ++
Sbjct: 2 ARGCLQGVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGNFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ Y+ + +
Sbjct: 57 LIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_031677.1| leukocyte surface antigen CD53 [Mus musculus].
Length = 219
Score = 51.2 bits (121), Expect = 2e-06
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 3/165 (1%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M +K V+ +FNLL ++CG +L GI+ V +G L + + F+ +G
Sbjct: 3 MSSLKLLKYVLFIFNLLFWVCGCCILGFGIYFLV-----QNTYGVLFRN-LPFLTLGNIL 56
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
C G+ ENKC LM Y E L
Sbjct: 57 VIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTIAILLFVY----EQKLNT 112
Query: 494 LVVPAIK---KDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSP 619
LV + + Y S + W+ L+CCG N +D+ P
Sbjct: 113 LVAEGLNDSIQHYHSDNSTMKAWDFIQTQLQCCGVNGSSDWTSGP 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,298,311
Number of extensions: 1151798
Number of successful extensions: 5401
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5265
Number of HSP's successfully gapped: 5
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230789.1| tetraspanin 1 [Sus scrofa]. 372 e-103
Alignment gi|XP_003122898.2| PREDICTED: tetraspanin-18-like [Sus scrofa]. 65 6e-11
Alignment gi|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa]. 64 2e-10
Alignment gi|NP_001070694.1| tetraspanin-9 [Sus scrofa]. 64 2e-10
Alignment gi|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa]. 57 3e-08
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 55 1e-07
Alignment gi|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [S... 52 1e-06
>ref|NP_001230789.1| tetraspanin 1 [Sus scrofa].
Length = 241
Score = 372 bits (955), Expect = e-103
Identities = 185/241 (76%), Positives = 185/241 (76%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGY
Sbjct: 1 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYFL 60
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
CYGAQTENKCALMM YTSMAEHFLTL
Sbjct: 61 IAAGAVLFALGFLGCYGAQTENKCALMMFFFILLLIFIAEIAAAVVALVYTSMAEHFLTL 120
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN 673
LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN
Sbjct: 121 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN 180
Query: 674 GTAVEPCTRDEAQNKTVQGCFNQLLYDIRTNXXXXXXXXXXXXXXXXXXMIVSMYLYCNL 853
GTAVEPCTRDEAQNK VQGCFNQLLYDIRTN MIVSMYLYCNL
Sbjct: 181 GTAVEPCTRDEAQNKAVQGCFNQLLYDIRTNAVTVGGVAAGIGGLELAAMIVSMYLYCNL 240
Query: 854 K 856
K
Sbjct: 241 K 241
>ref|XP_003122898.2| PREDICTED: tetraspanin-18-like [Sus scrofa].
Length = 263
Score = 65.5 bits (158), Expect = 6e-11
Identities = 50/181 (27%), Positives = 68/181 (37%), Gaps = 8/181 (4%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C S +K +M +FN IFL GA LL VGIWV VD F +I ++ + Y
Sbjct: 5 CLSCMKYLMFVFNFFIFLGGACLLGVGIWVMVDPTGFREIV----AANPLLITGAYILLA 60
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEHFLTLL 496
C GA ENKC L+ + ++ F T
Sbjct: 61 MGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFT-- 118
Query: 497 VVPAIKKDYGSQKD---FTQVWNSTMEGLKCCGFNNYTDFEGSPYY----TENKVFPPYC 655
+ K Y D F+ WNS M CCG N DF+ + + ++ P C
Sbjct: 119 --KELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFRLLTLDSDEVPEAC 176
Query: 656 C 658
C
Sbjct: 177 C 177
>ref|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa].
Length = 239
Score = 63.5 bits (153), Expect = 2e-10
Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 3/208 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFG--PLSSSAMQFVNVG 304
A C +K +M LFNL+ +LCG LL VGIW+SV +F P S+A + +G
Sbjct: 2 ARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIG 61
Query: 305 YXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEH 481
C GA EN+C L+ Y + E+
Sbjct: 62 -------TIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNEN 114
Query: 482 FLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCF 661
L + + + WN + CCG +YTD+ P EN V P CC
Sbjct: 115 ARKDLKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDW--YPVLGENTV-PDRCCM 171
Query: 662 DPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
+ G C R+ GC+ ++
Sbjct: 172 ENSQG-----CGRNSTTPLWKTGCYEKV 194
>ref|NP_001070694.1| tetraspanin-9 [Sus scrofa].
Length = 239
Score = 63.5 bits (153), Expect = 2e-10
Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 3/208 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFG--PLSSSAMQFVNVG 304
A C +K +M LFNL+ +LCG LL VGIW+SV +F P S+A + +G
Sbjct: 2 ARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIG 61
Query: 305 YXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEH 481
C GA EN+C L+ Y + E+
Sbjct: 62 -------TIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNEN 114
Query: 482 FLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCF 661
L + + + WN + CCG +YTD+ P EN V P CC
Sbjct: 115 ARKDLKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDW--YPVLGENTV-PDRCCM 171
Query: 662 DPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
+ G C R+ GC+ ++
Sbjct: 172 ENSQG-----CGRNSTTPLWKTGCYEKV 194
>ref|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa].
Length = 238
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ +F + SS+ ++
Sbjct: 2 ARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA EN+C L+ YT + +
Sbjct: 57 LIATGTLVMAIGFVGCIGAIKENRCLLLTFFVVLLLVFLLEATVAVLFFTYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+ + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 RDLKKGLHL-YGTPGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Frame = +2
Query: 125 GAAMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSS----AMQF 292
GAA C K + LFNLL F+ GA +L G+W+ D SF+ + S+S A F
Sbjct: 2 GAA--CIKVTKYFLFLFNLLFFVLGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIF 59
Query: 293 VNVGYXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSM 472
+++G C GA E +C L +
Sbjct: 60 ISIG-------AFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGK 112
Query: 473 AEHFLTLLVVPAIKK-DYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTE--NKVF 643
+ + +V I+K + G Q + W+ ++CCG+ ++ ++ +P N +
Sbjct: 113 LKQEMGSIVTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTY 172
Query: 644 PPYC 655
P C
Sbjct: 173 PCSC 176
>ref|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [Sus scrofa].
Length = 219
Score = 51.6 bits (122), Expect = 1e-06
Identities = 38/156 (24%), Positives = 58/156 (37%)
Frame = +2
Query: 152 IKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXXXXXX 331
+K V+ FNLL + CG +L GI++ + F +F L S + +G
Sbjct: 9 LKYVLFFFNLLFWFCGCCILGFGIYLLIHN-DFGVLFHKLPS-----LTLGNVLIIVGSI 62
Query: 332 XXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTLLVVPAI 511
C G+ ENKC LM Y ++ + +I
Sbjct: 63 IMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEPKLNVYVAEGLTDSI 122
Query: 512 KKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSP 619
+ Y S W+S L+CCG N +D+ G P
Sbjct: 123 HR-YHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,777,862
Number of extensions: 913270
Number of successful extensions: 4745
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4613
Number of HSP's successfully gapped: 7
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005718.2| tetraspanin-1 [Homo sapiens]. 304 1e-82
Alignment gi|NP_570139.3| tetraspanin-18 [Homo sapiens]. 70 4e-12
Alignment gi|NP_036598.1| tetraspanin-16 [Homo sapiens]. 70 6e-12
Alignment gi|NP_001161792.1| tetraspanin-9 [Homo sapiens]. 64 2e-10
Alignment gi|NP_006666.1| tetraspanin-9 [Homo sapiens]. 64 2e-10
Alignment gi|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens]. 62 2e-09
Alignment gi|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens]. 62 2e-09
Alignment gi|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens]. 62 2e-09
Alignment gi|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens]. 62 2e-09
Alignment gi|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens]. 62 2e-09
>ref|NP_005718.2| tetraspanin-1 [Homo sapiens].
Length = 241
Score = 304 bits (778), Expect = 1e-82
Identities = 150/241 (62%), Positives = 169/241 (70%)
Frame = +2
Query: 134 MRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXX 313
M+CFSFIKT+MILFNLLIFLCGAALLAVGIWVS+DG SF+KIFGPLSSSAMQFVNVGY
Sbjct: 1 MQCFSFIKTMMILFNLLIFLCGAALLAVGIWVSIDGASFLKIFGPLSSSAMQFVNVGYFL 60
Query: 314 XXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLTL 493
CYGA+TE+KCAL+ YT+MAEHFLTL
Sbjct: 61 IAAGVVVFALGFLGCYGAKTESKCALVTFFFILLLIFIAEVAAAVVALVYTTMAEHFLTL 120
Query: 494 LVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFDPGN 673
LVVPAIKKDYGSQ+DFTQVWN+TM+GLKCCGF NYTDFE SPY+ EN FPP+CC D
Sbjct: 121 LVVPAIKKDYGSQEDFTQVWNTTMKGLKCCGFTNYTDFEDSPYFKENSAFPPFCCNDNVT 180
Query: 674 GTAVEPCTRDEAQNKTVQGCFNQLLYDIRTNXXXXXXXXXXXXXXXXXXMIVSMYLYCNL 853
TA E CT+ +A ++ V+GCFNQLLYDIRTN MIVSMYLYCNL
Sbjct: 181 NTANETCTKQKAHDQKVEGCFNQLLYDIRTNAVTVGGVAAGIGGLELAAMIVSMYLYCNL 240
Query: 854 K 856
+
Sbjct: 241 Q 241
>ref|NP_570139.3| tetraspanin-18 [Homo sapiens].
Length = 248
Score = 70.1 bits (170), Expect = 4e-12
Identities = 59/221 (26%), Positives = 84/221 (38%), Gaps = 13/221 (5%)
Frame = +2
Query: 140 CFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXX 319
C S +K +M +FN IFL GA LLA+GIWV VD F +I ++ + Y
Sbjct: 5 CLSCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIV----AANPLLLTGAYILLA 60
Query: 320 XXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEHFLTLL 496
C GA ENKC L+ + ++ F T
Sbjct: 61 MGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFT-- 118
Query: 497 VVPAIKKDYGSQKD---FTQVWNSTMEGLKCCGFNNYTDFEGSPYY----TENKVFPPYC 655
+ K Y D F+ WNS M CCG N DF+ + + +++ P C
Sbjct: 119 --KELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFRLLTLDSEEVPEAC 176
Query: 656 C-FDPGNGTAV----EPCTRDEAQNKTVQGCFNQLLYDIRT 763
C +P + V E C + QGC+ +L T
Sbjct: 177 CRREPQSRDGVLLSREECLLGRSLFLNKQGCYTVILNTFET 217
>ref|NP_036598.1| tetraspanin-16 [Homo sapiens].
Length = 245
Score = 69.7 bits (169), Expect = 6e-12
Identities = 61/214 (28%), Positives = 88/214 (41%), Gaps = 7/214 (3%)
Frame = +2
Query: 143 FSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYXXXXX 322
+S +K ++ L N + + G L+ +GI G S + G LSS+ + ++VG
Sbjct: 8 YSSLKKLLSLLNGFVAVSGIILVGLGIGGKCGGASLTNVLG-LSSAYL--LHVGNLCLVM 64
Query: 323 XXXXXXXXXXXCYGAQTENK-----CALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFL 487
YGA E++ C L M EH
Sbjct: 65 GCITVLLGCAGWYGATKESRGTLLFCILSMVIVLIMEVTAATVVLLFFPIVGDVALEH-- 122
Query: 488 TLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPY-YTENKVFPPYCCFD 664
T + + + Y D++ WN ME LKCCG NNYTDF GS + T +P CC
Sbjct: 123 TFVTLRKNYRGYNEPDDYSTQWNLVMEKLKCCGVNNYTDFSGSSFEMTTGHTYPRSCCKS 182
Query: 665 PGNGTAVEPCTRDEAQNKTVQ-GCFNQLLYDIRT 763
G +V RD + N Q GCF++LL +T
Sbjct: 183 IG---SVSCDGRDVSPNVIHQKGCFHKLLKITKT 213
>ref|NP_001161792.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 64.3 bits (155), Expect = 2e-10
Identities = 55/208 (26%), Positives = 78/208 (37%), Gaps = 3/208 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFG--PLSSSAMQFVNVG 304
A C +K +M LFNL+ +LCG LL VGIW+SV +F P S+A + +G
Sbjct: 2 ARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIG 61
Query: 305 YXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEH 481
C GA ENKC L+ Y + E+
Sbjct: 62 -------TIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNEN 114
Query: 482 FLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCF 661
L + + WN ++CCG +YTD+ P EN V P CC
Sbjct: 115 AKKDLKEGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTV-PDRCCM 171
Query: 662 DPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
+ G C R+ GC+ ++
Sbjct: 172 ENSQG-----CGRNATTPLWRTGCYEKV 194
>ref|NP_006666.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 64.3 bits (155), Expect = 2e-10
Identities = 55/208 (26%), Positives = 78/208 (37%), Gaps = 3/208 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFG--PLSSSAMQFVNVG 304
A C +K +M LFNL+ +LCG LL VGIW+SV +F P S+A + +G
Sbjct: 2 ARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIG 61
Query: 305 YXXXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXY-TSMAEH 481
C GA ENKC L+ Y + E+
Sbjct: 62 -------TIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNEN 114
Query: 482 FLTLLVVPAIKKDYGSQKDFTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCF 661
L + + WN ++CCG +YTD+ P EN V P CC
Sbjct: 115 AKKDLKEGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTV-PDRCCM 171
Query: 662 DPGNGTAVEPCTRDEAQNKTVQGCFNQL 745
+ G C R+ GC+ ++
Sbjct: 172 ENSQG-----CGRNATTPLWRTGCYEKV 194
>ref|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ SF + SS+ ++
Sbjct: 2 ARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ SF + SS+ ++
Sbjct: 2 ARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ SF + SS+ ++
Sbjct: 2 ARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ SF + SS+ ++
Sbjct: 2 ARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
>ref|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Frame = +2
Query: 131 AMRCFSFIKTVMILFNLLIFLCGAALLAVGIWVSVDGPSFMKIFGPLSSSAMQFVNVGYX 310
A C +K +M FNLL +L G +L VGIW++ SF + SS+ ++
Sbjct: 2 ARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL-----SSSFPSLSAANL 56
Query: 311 XXXXXXXXXXXXXXXCYGAQTENKCALMMXXXXXXXXXXXXXXXXXXXXXYTSMAEHFLT 490
C GA ENKC L+ YT + +
Sbjct: 57 LIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQ 116
Query: 491 LLVVPAIKKDYGSQKD--FTQVWNSTMEGLKCCGFNNYTDFEGSPYYTENKVFPPYCCFD 664
+ + YG+Q + T W+ +CCG +NYTD+ Y +V P CC +
Sbjct: 117 QDLKKGLHL-YGTQGNVGLTNAWSIIQTDFRCCGVSNYTDW--FEVYNATRV-PDSCCLE 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,981,151
Number of extensions: 1377697
Number of successful extensions: 6903
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6706
Number of HSP's successfully gapped: 14
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007618
(1324 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 952 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 952 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Minus
Query: 810 agctggctgccatgatcgtgtccatgtatctatactgcaacctgaaataagtctgcctcc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704576 agctggctgccatgatcgtgtccatgtatctatactgcaacctgaaataagtctgcctcc 152704517
Query: 870 gcctccgcccctgctgctgctacctacgaccaggaaggaggtaccctggcactgccaaga 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704516 gcctccgcccctgctgctgctacctacgaccaggaaggaggtaccctggcactgccaaga 152704457
Query: 930 ggctgtgatcagggtggggagggatctaatggtgccacttggatcagaggcccatttggc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704456 ggctgtgatcagggtggggagggatctaatggtgccacttggatcagaggcccatttggc 152704397
Query: 990 tgctctggactcgaggccaaacaggcagcacccccttcagcctgtgcctgacttttcctt 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704396 tgctctggactcgaggccaaacaggcagcacccccttcagcctgtgcctgacttttcctt 152704337
Query: 1050 ccattagggggttggggtacgcctgttccagcgcctctaagagaagtcctcttgcttatt 1109
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 152704336 ccattatggggttggggtacgcctgttccagtgcctctaagagaagtcctcttgcttatt 152704277
Query: 1110 cctccagtctgtcccttaaaccctggagaccccctcgggccaagggcggggagctcttgg 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704276 cctccagtctgtcccttaaaccctggagaccccctcgggccaagggcggggagctcttgg 152704217
Query: 1170 tgaccccagtactccacagaggggatgagagaaaggcatcctagagcctgagcatgtgca 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704216 tgaccccagtactccacagaggggatgagagaaaggcatcctagagcctgagcatgtgca 152704157
Query: 1230 aatcagcagtcactgggcggatgtgtagacacgtcagaattcacaaacccattaaaatgt 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704156 aatcagcagtcactgggcggatgtgtagacacgtcagaattcacaaacccattaaaatgt 152704097
Query: 1290 ttatattt 1297
||||||||
Sbjct: 152704096 ttatattt 152704089
Score = 402 bits (203), Expect = e-109
Identities = 206/207 (99%)
Strand = Plus / Minus
Query: 191 ctgtgtggtgcggccctgttggcagtgggcatctgggtctccgtcgacggaccgtccttc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705828 ctgtgtggtgcggccctgttggcagtgggcatctgggtctccgtcgacggaccgtccttc 152705769
Query: 251 atgaagatcttcgggccgctgtcgtccagtgccatgcagtttgtcaacgtgggctacttc 310
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705768 atgaaggtcttcgggccgctgtcgtccagtgccatgcagtttgtcaacgtgggctacttc 152705709
Query: 311 ctcatcgcagctggcgctgtcctcttcgctctcggcttcctgggctgctacggggcccag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705708 ctcatcgcagctggcgctgtcctcttcgctctcggcttcctgggctgctacggggcccag 152705649
Query: 371 acggagaacaagtgtgccctcatgatg 397
|||||||||||||||||||||||||||
Sbjct: 152705648 acggagaacaagtgtgccctcatgatg 152705622
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 571 gctcaagtgctgtggcttcaacaactacacggattttgagggctctccctactacactga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705077 gctcaagtgctgtggcttcaacaactacacggattttgagggctctccctactacactga 152705018
Query: 631 gaacaaggtcttcccgccatactgttgctttgaccctggcaatggcaccgctgtggaacc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705017 gaacaaggtcttcccgccatactgttgctttgaccctggcaatggcaccgctgtggaacc 152704958
Query: 691 ctgcactagagatgaggcccagaacaagacggtgcagg 728
||||||||||||||||||||||||||||||||||||||
Sbjct: 152704957 ctgcactagagatgaggcccagaacaagacggtgcagg 152704920
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 1 gcagtacctggtgagccagctcgtctccctgcctgcccactcagtggcagtgccccgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152708983 gcagtacctggtgagccagctcgtctccctgcctgcccactcagtggcagtgccccgagg 152708924
Query: 61 cagctgtcccctctggagcgcagcagatccctctttcagaactcactaccgagagccccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152708923 cagctgtcccctctggagcgcagcagatccctctttcagaactcactaccgagagccccc 152708864
Query: 121 agcagg 126
||||||
Sbjct: 152708863 agcagg 152708858
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 472 ggctgagcacttcctgaccttgctggtcgtgcccgccatcaagaaagactacggttccca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705257 ggctgagcacttcctgaccttgctggtcgtgcccgccatcaagaaagactacggttccca 152705198
Query: 532 gaaggacttcacccaagtgtggaactccaccatggaaggg 571
||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705197 gaaggacttcacccaagtgtggaactccaccatggaaggg 152705158
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 726 agggttgcttcaatcagcttctgtacgacatccgaaccaatgcagtcactgtgggtggtg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152704820 agggttgcttcaatcagcttctgtacgacatccgaaccaatgcagtcactgtgggtggtg 152704761
Query: 786 tggcagctggaattgggggcttggag 811
||||||||||||||||||||||||||
Sbjct: 152704760 tggcagctggaattgggggcttggag 152704735
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 397 gttcttcttcatcctcctcctcatcttcattgcggagatcgcagctgctgtggtcgccct 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152705417 gttcttcttcatcctcctcctcatcttcattgcggagatcgcagctgctgtggtcgccct 152705358
Query: 457 ggtctacacctccatgg 473
|||||||||||||||||
Sbjct: 152705357 ggtctacacctccatgg 152705341
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 123 caggagccgccatgcgctgcttcagcttcattaagaccgtgatgatcctcttcaatctgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152708435 caggagccgccatgcgctgcttcagcttcattaagaccgtgatgatcctcttcaatctgc 152708376
Query: 183 tcatcttt 190
||||||||
Sbjct: 152708375 tcatcttt 152708368
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,070,214
Number of extensions: 310
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 8
Length of query: 1324
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1303
Effective length of database: 2,808,413,156
Effective search space: 3659362342268
Effective search space used: 3659362342268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)