Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 450 e-126
Alignment gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 450 e-126
Alignment gi|XP_002695025.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 305 5e-83
Alignment gi|XP_002701919.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 305 5e-83
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 90 4e-18
Alignment gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei... 73 3e-13
Alignment gi|NP_001095693.1| chromodomain Y-like protein [Bos taurus]. 67 2e-11
Alignment gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei... 64 2e-10
Alignment gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain... 64 2e-10
Alignment gi|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [B... 64 3e-10
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 450 bits (1157), Expect = e-126
Identities = 227/316 (71%), Positives = 256/316 (81%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVTAV 207
A A A R +LL RLTA +NL L+L PMS+FTQ GH+YESL+VTA
Sbjct: 2 AAAFAAVRRFGNLLIPRLTASSNLGLNLRPMSAFTQEEASKASPEEAPGHSYESLRVTAA 61
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
QKHVLHVQLNRPEKRNAMN+AFWREMVVCFNKIA+D DCR VVISGAGKMF+SGIDL+DM
Sbjct: 62 QKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGIDLMDM 121
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
ASD+ QP G+D ARISWHLH+L+++YQETFSVIEKCPKPV VDLITACD
Sbjct: 122 ASDLLQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACD 181
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
IRY +D+FFQVKEVD+GLAADVGTLQRLPK+IGNQSLVNELA+TARKMMADEAL SGLV
Sbjct: 182 IRYSTRDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLV 241
Query: 748 SRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQ 927
SR+FPD+E I+SKSPVAVQ TKINL+YSRDHSV E LNYMKSWNMSMLQ
Sbjct: 242 SRLFPDKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQ 301
Query: 928 TKDVIKSVQAAMEKKN 975
TKD++KSVQAA+EKK+
Sbjct: 302 TKDIMKSVQAAIEKKD 317
>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 450 bits (1157), Expect = e-126
Identities = 227/316 (71%), Positives = 256/316 (81%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVTAV 207
A A A R +LL RLTA +NL L+L PMS+FTQ GH+YESL+VTA
Sbjct: 2 AAAFAAVRRFGNLLIPRLTASSNLGLNLRPMSAFTQEEASKASPEEAPGHSYESLRVTAA 61
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
QKHVLHVQLNRPEKRNAMN+AFWREMVVCFNKIA+D DCR VVISGAGKMF+SGIDL+DM
Sbjct: 62 QKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGIDLMDM 121
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
ASD+ QP G+D ARISWHLH+L+++YQETFSVIEKCPKPV VDLITACD
Sbjct: 122 ASDLLQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACD 181
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
IRY +D+FFQVKEVD+GLAADVGTLQRLPK+IGNQSLVNELA+TARKMMADEAL SGLV
Sbjct: 182 IRYSTRDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLV 241
Query: 748 SRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQ 927
SR+FPD+E I+SKSPVAVQ TKINL+YSRDHSV E LNYMKSWNMSMLQ
Sbjct: 242 SRLFPDKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQ 301
Query: 928 TKDVIKSVQAAMEKKN 975
TKD++KSVQAA+EKK+
Sbjct: 302 TKDIMKSVQAAIEKKD 317
>ref|XP_002695025.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 2 [Bos
taurus].
Length = 268
Score = 305 bits (780), Expect = 5e-83
Identities = 178/316 (56%), Positives = 201/316 (63%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVTAV 207
A A A R +LL RLTA +NL L+L PMS+FTQ GH+YESL+VTA
Sbjct: 2 AAAFAAVRRFGNLLIPRLTASSNLGLNLRPMSAFTQEEASKASPEEAPGHSYESLRVTAA 61
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
QKHVLHVQLNRPEKRNAMN+AFWREMVVCFNKIA+D DCR VVISGAGKMF+SG+DL+
Sbjct: 62 QKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGVDLI-T 120
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
A DI S F V E VD+ A D
Sbjct: 121 ACDI-----------------RYSTRDSFFQVKE------------------VDVGLAAD 145
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
+ GTLQRLPK+IGNQSLVNELA+TARKMMADEAL SGLV
Sbjct: 146 V----------------------GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLV 183
Query: 748 SRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQ 927
SR+FPD+E I+SKSPVAVQ TKINL+YSRDHSV E LNYMKSWNMSMLQ
Sbjct: 184 SRLFPDKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQ 243
Query: 928 TKDVIKSVQAAMEKKN 975
TKD++KSVQAA+EKK+
Sbjct: 244 TKDIMKSVQAAIEKKD 259
>ref|XP_002701919.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 2 [Bos
taurus].
Length = 268
Score = 305 bits (780), Expect = 5e-83
Identities = 178/316 (56%), Positives = 201/316 (63%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVTAV 207
A A A R +LL RLTA +NL L+L PMS+FTQ GH+YESL+VTA
Sbjct: 2 AAAFAAVRRFGNLLIPRLTASSNLGLNLRPMSAFTQEEASKASPEEAPGHSYESLRVTAA 61
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
QKHVLHVQLNRPEKRNAMN+AFWREMVVCFNKIA+D DCR VVISGAGKMF+SG+DL+
Sbjct: 62 QKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGVDLI-T 120
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
A DI S F V E VD+ A D
Sbjct: 121 ACDI-----------------RYSTRDSFFQVKE------------------VDVGLAAD 145
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
+ GTLQRLPK+IGNQSLVNELA+TARKMMADEAL SGLV
Sbjct: 146 V----------------------GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLV 183
Query: 748 SRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQ 927
SR+FPD+E I+SKSPVAVQ TKINL+YSRDHSV E LNYMKSWNMSMLQ
Sbjct: 184 SRLFPDKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQ 243
Query: 928 TKDVIKSVQAAMEKKN 975
TKD++KSVQAA+EKK+
Sbjct: 244 TKDIMKSVQAAIEKKD 259
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 89.7 bits (221), Expect = 4e-18
Identities = 69/249 (27%), Positives = 113/249 (45%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+QLNRP+ NA+ E+ +DP A+V++G K+F +G D+ +M S FQ
Sbjct: 50 IQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQ 109
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
+ + +S + + + + KPV +L CDI Y +
Sbjct: 110 ---------NCYSGGFLSHWDQ----LTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGE 156
Query: 586 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 765
A F E+ IG G QRL + +G +SL E+ T ++ A +A +GLVS+IFP
Sbjct: 157 KAQFGQPEILIGTIPGAGGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFP- 214
Query: 766 QEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 945
E IAS S + K ++ + + ++AEG+ K S T+D +
Sbjct: 215 VETVVEEAIQCAEKIASNSKIVTAMAKESVNAAFEMTLAEGVKLEKKLFYSTFATEDRKE 274
Query: 946 SVQAAMEKK 972
+ A +EK+
Sbjct: 275 GMAAFVEKR 283
>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Bos taurus].
Length = 296
Score = 73.2 bits (178), Expect = 3e-13
Identities = 62/271 (22%), Positives = 111/271 (40%), Gaps = 4/271 (1%)
Frame = +1
Query: 172 GHNYESLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGA 348
G + + + + + +NRP RNA+ F +++ ++ +D R ++ SG
Sbjct: 31 GREIQVCALAGPNQGIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQVRVLIFRSGV 90
Query: 349 GKMFTSGIDLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXX 528
+F +G DL + Q +V L L+++ I P P
Sbjct: 91 KGVFCAGADLKERE----QMSEAEVGLFVQRLRGLMTE-------IAAFPAPTIAAMDGF 139
Query: 529 XXXXXVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTAR 708
++L ACD+R A A + E GL G QRLP+ +G +L EL FT R
Sbjct: 140 ALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGR 198
Query: 709 KMMADEALNSGLVSRIFPDQE---VXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSV 879
++ +A GLV+ E I ++P+AV+ +K+ + + +
Sbjct: 199 RLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPIAVRLSKVAIDRGIEVDI 258
Query: 880 AEGLNYMKSWNMSMLQTKDVIKSVQAAMEKK 972
A G+ + T+D ++ + A EK+
Sbjct: 259 ASGMAIEGICYAQNIPTRDRLEGMAAFREKR 289
>ref|NP_001095693.1| chromodomain Y-like protein [Bos taurus].
Length = 544
Score = 67.0 bits (162), Expect = 2e-11
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 291 VVRKQDGFTHILLSTKSSENNSLNPEVMKELQSALSTAAAD-DSKLVLLSAVGSVFCCGL 349
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + AR++ + N ++ + + KP+ +
Sbjct: 350 DFIYFIRRLTDDRKRESARMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 402
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 403 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 461
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 462 GKGLVSQVF 470
>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
taurus].
Length = 300
Score = 63.9 bits (154), Expect = 2e-10
Identities = 46/189 (24%), Positives = 86/189 (45%)
Frame = +1
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
Q + + L+ P++RNA++ A + + A+ D + ++IS G +F+SG DL ++
Sbjct: 53 QDGIRSIVLSDPKRRNALSLAMLKSLQSDILHEAESQDLKVIIISAEGPVFSSGHDLKEL 112
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
+ QG D +H + E +I+ P P+ L+ +CD
Sbjct: 113 TDE----QGPD-----YHAE-VFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCD 162
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
I + + F + V+IG+ + + +L E+ FT + A EAL GL+
Sbjct: 163 IAVASDKSSFAMPGVNIGVFCSTPAVALGRAVPRKVAL--EMLFTGEPISAQEALLHGLL 220
Query: 748 SRIFPDQEV 774
SR+ P++ +
Sbjct: 221 SRVVPEERL 229
>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
taurus].
Length = 300
Score = 63.9 bits (154), Expect = 2e-10
Identities = 46/189 (24%), Positives = 86/189 (45%)
Frame = +1
Query: 208 QKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDM 387
Q + + L+ P++RNA++ A + + A+ D + ++IS G +F+SG DL ++
Sbjct: 53 QDGIRSIVLSDPKRRNALSLAMLKSLQSDILHEAESQDLKVIIISAEGPVFSSGHDLKEL 112
Query: 388 ASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACD 567
+ QG D +H + E +I+ P P+ L+ +CD
Sbjct: 113 TDE----QGPD-----YHAE-VFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCD 162
Query: 568 IRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLV 747
I + + F + V+IG+ + + +L E+ FT + A EAL GL+
Sbjct: 163 IAVASDKSSFAMPGVNIGVFCSTPAVALGRAVPRKVAL--EMLFTGEPISAQEALLHGLL 220
Query: 748 SRIFPDQEV 774
SR+ P++ +
Sbjct: 221 SRVVPEERL 229
>ref|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [Bos taurus].
Length = 393
Score = 63.5 bits (153), Expect = 3e-10
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 2/196 (1%)
Frame = +1
Query: 184 ESLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFT 363
+SL VT+ + + ++LNRP K+NA+ + +++ ++D + V++G+G +
Sbjct: 139 DSLVVTS-EDGITTIRLNRPAKKNALTTQMYHDIIAALQAASKD-ESAITVLTGSGDYYC 196
Query: 364 SGIDLVDMASDIFQPQG--EDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXX 537
SG DL + P G E++AR + L ++ + PKP+
Sbjct: 197 SGNDLTNFTH---LPAGGLEEMARSAAAL------LRDFVNCFIDFPKPLVAVVNGPAVG 247
Query: 538 XXVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMM 717
V ++ D+ Y A F +G + + + PKI+G+ L F +K+
Sbjct: 248 ISVTILGLFDVVYATDRASFHTPFSHLGQSPEGCSSYTFPKIMGSSKAAEMLLF-GKKLT 306
Query: 718 ADEALNSGLVSRIFPD 765
A EA GLV+ +FPD
Sbjct: 307 AQEACAQGLVTEVFPD 322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,584,500
Number of extensions: 1032889
Number of successful extensions: 3120
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3104
Number of HSP's successfully gapped: 17
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 449 e-126
Alignment gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 371 e-103
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 87 2e-17
Alignment gi|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-C... 69 7e-12
Alignment gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr... 65 1e-10
Alignment gi|XP_848773.1| PREDICTED: similar to chromodomain protein, Y c... 64 2e-10
Alignment gi|XP_856980.1| PREDICTED: similar to chromodomain protein, Y c... 64 2e-10
Alignment gi|XP_535874.2| PREDICTED: similar to chromodomain protein, Y c... 64 2e-10
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 62 1e-09
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 62 1e-09
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 449 bits (1155), Expect = e-126
Identities = 232/317 (73%), Positives = 255/317 (80%), Gaps = 2/317 (0%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPT--NLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVT 201
A AMA +R LL RRL APT LSL L P+SS Q GH+YESL+VT
Sbjct: 2 AAAMAASRSLRDLLMRRLVAPTPQGLSLCLRPLSSAAQDEASTAAPREAPGHSYESLRVT 61
Query: 202 AVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLV 381
A QKH+LHVQLNRPEKRNAMN+AFWREMV CFNKIAQDPDCRAVVISGAGK+FT+GIDL+
Sbjct: 62 AAQKHILHVQLNRPEKRNAMNKAFWREMVECFNKIAQDPDCRAVVISGAGKVFTAGIDLM 121
Query: 382 DMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITA 561
DMAS+I QPQG+DVARISW+L NLI++YQETFSVIEKCPKPV VDLITA
Sbjct: 122 DMASEILQPQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITA 181
Query: 562 CDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSG 741
CDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFT R MMADEAL SG
Sbjct: 182 CDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASG 241
Query: 742 LVSRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSM 921
LVSR+FPD+E I++KSPVAVQ TKINL+YSR+H V EGLNYM +WNMSM
Sbjct: 242 LVSRVFPDKEGMLDAAFTLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSM 301
Query: 922 LQTKDVIKSVQAAMEKK 972
LQT+D+IKSVQAAMEKK
Sbjct: 302 LQTQDIIKSVQAAMEKK 318
>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 2 [Canis familiaris].
Length = 248
Score = 371 bits (952), Expect = e-103
Identities = 186/238 (78%), Positives = 204/238 (85%)
Frame = +1
Query: 259 MNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQPQGEDVARISW 438
MN+AFWREMV CFNKIAQDPDCRAVVISGAGK+FT+GIDL+DMAS+I QPQG+DVARISW
Sbjct: 1 MNKAFWREMVECFNKIAQDPDCRAVVISGAGKVFTAGIDLMDMASEILQPQGDDVARISW 60
Query: 439 HLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQDAFFQVKEVDI 618
+L NLI++YQETFSVIEKCPKPV VDLITACDIRYCAQDAFFQVKEVDI
Sbjct: 61 NLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVDI 120
Query: 619 GLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPDQEVXXXXXXXX 798
GLAADVGTLQRLPKIIGNQSLVNELAFT R MMADEAL SGLVSR+FPD+E
Sbjct: 121 GLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKEGMLDAAFTL 180
Query: 799 XXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIKSVQAAMEKK 972
I++KSPVAVQ TKINL+YSR+H V EGLNYM +WNMSMLQT+D+IKSVQAAMEKK
Sbjct: 181 AAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAMEKK 238
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 87.4 bits (215), Expect = 2e-17
Identities = 66/249 (26%), Positives = 108/249 (43%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+QLNRP+ NA+ E+ +DP A+V++G K F +G D+ +M + FQ
Sbjct: 335 IQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 394
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
SK+ + + + KPV +L CDI Y +
Sbjct: 395 -------------DCYSSKFLSHWDQLAQVKKPVIAAVNGYALGGGCELAMMCDIIYAGE 441
Query: 586 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 765
A F E+ +G G QRL + +G +SL E+ T ++ A +A +GLVS+IFP
Sbjct: 442 KAQFAQPEILLGTIPGAGGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFP- 499
Query: 766 QEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 945
E IAS S + K ++ + + ++ EG K + T+D +
Sbjct: 500 VETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFATEDRKE 559
Query: 946 SVQAAMEKK 972
+ A +EK+
Sbjct: 560 GMTAFVEKR 568
>ref|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform
1 [Canis familiaris].
Length = 659
Score = 68.9 bits (167), Expect = 7e-12
Identities = 51/195 (26%), Positives = 92/195 (47%)
Frame = +1
Query: 181 YESLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMF 360
YE+L VT+ + + + +NRP K+NA+ +RE+++ ++D D +V++G G +
Sbjct: 404 YETLVVTS-EDSITKIMMNRPAKKNALTIQMYREIMLALEAASKD-DSTIIVLTGNGDYY 461
Query: 361 TSGIDLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXX 540
+SG DL++ + P GE + N ++ PKP+
Sbjct: 462 SSGNDLMNFMN---IPPGE----MEKEAKNGAILLRDFVGCFIDFPKPLVAVINGPAIGI 514
Query: 541 XVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMA 720
V ++ D+ Y + A F +G + + + PKI+G Q+ E+ +K+ A
Sbjct: 515 SVTILGLFDLVYASDRATFHTPFTHLGQSPEGCSSYTFPKIMG-QAKAAEMLMFGKKLTA 573
Query: 721 DEALNSGLVSRIFPD 765
EA GLV+ +FPD
Sbjct: 574 REACAQGLVTEVFPD 588
>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
precursor (AU-specific RNA-binding enoyl-CoA hydratase)
(AU-binding protein/enoyl-CoA hydratase) [Canis
familiaris].
Length = 340
Score = 65.1 bits (157), Expect = 1e-10
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 4/251 (1%)
Frame = +1
Query: 232 LNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQP 408
+NR +N +++ + + + + D R +++ S +F +G DL
Sbjct: 95 INRAYAKNTFSKSLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK--------- 145
Query: 409 QGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQD 588
E V + +SK + I P P ++L ACDIR A
Sbjct: 146 --ERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDGLALGGGLELALACDIRVAASS 203
Query: 589 AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF--- 759
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S +
Sbjct: 204 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 262
Query: 760 PDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDV 939
+ + + PVAV+ K+ + + + GL ++ + TKD
Sbjct: 263 QEGDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDR 322
Query: 940 IKSVQAAMEKK 972
++ + A EK+
Sbjct: 323 LEGLLAFKEKR 333
>ref|XP_848773.1| PREDICTED: similar to chromodomain protein, Y chromosome-like
isoform a isoform 2 [Canis familiaris].
Length = 587
Score = 63.9 bits (154), Expect = 2e-10
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 334 VVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 392
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 393 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 445
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 446 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 504
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 505 GKGLVSQVF 513
>ref|XP_856980.1| PREDICTED: similar to chromodomain protein, Y chromosome-like
isoform a isoform 3 [Canis familiaris].
Length = 586
Score = 63.9 bits (154), Expect = 2e-10
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 333 VVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 391
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 392 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 444
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 445 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 503
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 504 GKGLVSQVF 512
>ref|XP_535874.2| PREDICTED: similar to chromodomain protein, Y chromosome-like
isoform a isoform 1 [Canis familiaris].
Length = 586
Score = 63.9 bits (154), Expect = 2e-10
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 333 VVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 391
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 392 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 444
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 445 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 503
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 504 GKGLVSQVF 512
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
3 [Canis familiaris].
Length = 761
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Frame = +1
Query: 205 VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKI-AQDPDCRAVVISGAGKMFTSGIDL 378
V+ V V+LN P + N +N+ E + N+I A D AV+IS F +G D+
Sbjct: 45 VKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADI 104
Query: 379 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLIT 558
+AS E+V RIS + Q F +EK KP+ ++L
Sbjct: 105 NMLASC---KTHEEVTRIS-------QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAI 154
Query: 559 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+C R +D EV +G+ G QRLPK++G + ++ T R + AD A
Sbjct: 155 SCQYRIATKDRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAF-DMMLTGRNIRADRAK 213
Query: 733 NSGLVSRI 756
GLV ++
Sbjct: 214 RMGLVDQL 221
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
2 [Canis familiaris].
Length = 762
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Frame = +1
Query: 205 VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKI-AQDPDCRAVVISGAGKMFTSGIDL 378
V+ V V+LN P + N +N+ E + N+I A D AV+IS F +G D+
Sbjct: 45 VKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADI 104
Query: 379 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLIT 558
+AS E+V RIS + Q F +EK KP+ ++L
Sbjct: 105 NMLASC---KTHEEVTRIS-------QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAI 154
Query: 559 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+C R +D EV +G+ G QRLPK++G + ++ T R + AD A
Sbjct: 155 SCQYRIATKDRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAF-DMMLTGRNIRADRAK 213
Query: 733 NSGLVSRI 756
GLV ++
Sbjct: 214 RMGLVDQL 221
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,265,996
Number of extensions: 1064875
Number of successful extensions: 3249
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3234
Number of HSP's successfully gapped: 15
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 411 e-115
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 90 3e-18
Alignment gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2... 77 2e-14
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 69 8e-12
Alignment gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p... 68 1e-11
Alignment gi|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus m... 67 3e-11
Alignment gi|NP_034011.1| chromodomain Y-like protein isoform 1 [Mus musc... 67 3e-11
Alignment gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3... 66 4e-11
Alignment gi|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus]. 59 6e-09
Alignment gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei... 56 4e-08
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Mus musculus].
Length = 327
Score = 411 bits (1057), Expect = e-115
Identities = 208/318 (65%), Positives = 250/318 (78%), Gaps = 2/318 (0%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPTNL--SLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVT 201
A AM ++R LL ++L + L ++SL +SS Q HNYES+QVT
Sbjct: 2 ATAMTVSSKLRGLLMQQLRGTSQLYFNISLRSLSSSAQEASKRAPEEVSD-HNYESIQVT 60
Query: 202 AVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLV 381
+ QKHVLHVQLNRPEKRNAMNRAFWRE+V CF KI++D DCRAVV+SGAGKMFTSGIDL+
Sbjct: 61 SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLM 120
Query: 382 DMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITA 561
DMAS++ QP G+D ARI+W+L +LISKYQ+TF+VIEKCPKPV VDL++A
Sbjct: 121 DMASELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSA 180
Query: 562 CDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSG 741
CDIRYC QDAFFQ+KEVD+GLAADVGTLQRLPK+IGNQSLVNEL F+ARKMMADEAL+SG
Sbjct: 181 CDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSG 240
Query: 742 LVSRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSM 921
LVSR+F D++ I+SKSPVAVQG+KINL+YSRDHSV E L+YM +WNMSM
Sbjct: 241 LVSRVFQDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSM 300
Query: 922 LQTKDVIKSVQAAMEKKN 975
LQT+D+IKSVQAAMEK++
Sbjct: 301 LQTQDIIKSVQAAMEKRD 318
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 89.7 bits (221), Expect = 3e-18
Identities = 69/249 (27%), Positives = 110/249 (44%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+QLNRP+ NA+ E+ QDP A+V++G K F +G D+ +M + FQ
Sbjct: 50 IQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQNRTFQ 109
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
SK+ + I + KPV +L CDI Y +
Sbjct: 110 -------------DCYSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGE 156
Query: 586 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 765
A F E+ +G G QRL + +G +SL E+ T ++ A +A +GLVS+IFP
Sbjct: 157 KAQFGQPEILLGTIPGAGGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV 215
Query: 766 QEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 945
+++ IAS S + V K ++ + + ++ EG K S T D +
Sbjct: 216 EKL-VEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRRE 274
Query: 946 SVQAAMEKK 972
+ A +EK+
Sbjct: 275 GMTAFVEKR 283
>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Mus musculus].
Length = 296
Score = 77.4 bits (189), Expect = 2e-14
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 4/263 (1%)
Frame = +1
Query: 196 VTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGK-MFTSGI 372
+T + + + +NRP RNA+ F E++ ++ +D R ++ A K +F +G
Sbjct: 39 LTGPNQGITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGA 98
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
DL + + Q DV + + + + S I P P ++L
Sbjct: 99 DLKE------REQMSDV-----EVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLEL 147
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
ACD+R A A + E GL G QRLP+ +G +L EL FT R++ +A
Sbjct: 148 ALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLNGAQAR 206
Query: 733 NSGLVSRIFPDQE---VXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMK 903
GLV+ E I ++P+AV+ K+ + + +A G+ +
Sbjct: 207 ELGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQ 266
Query: 904 SWNMSMLQTKDVIKSVQAAMEKK 972
+ T+D ++ + A EK+
Sbjct: 267 MCYAQNIPTQDRLEGMAAFREKR 289
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 68.6 bits (166), Expect = 8e-12
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 4/188 (2%)
Frame = +1
Query: 205 VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKI-AQDPDCRAVVISGAGKMFTSGIDL 378
V+ V +++N P + N +N+ E + N+I A D AV+IS F +G D
Sbjct: 45 VKGDVAVIRINSPNSKVNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFVAGAD- 103
Query: 379 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLIT 558
++M S PQ + RIS + Q F +EK PKPV ++L
Sbjct: 104 INMLSSCTTPQ--EATRIS-------QEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAI 154
Query: 559 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
AC R +D V EV +G+ G QRLPK++G + ++ T R + AD A
Sbjct: 155 ACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRNIRADRAK 213
Query: 733 NSGLVSRI 756
GLV ++
Sbjct: 214 KMGLVDQL 221
>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 67.8 bits (164), Expect = 1e-11
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 4/251 (1%)
Frame = +1
Query: 232 LNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQP 408
+NR +NA+++ + + + + D R ++I S +F +G DL + A
Sbjct: 69 INRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSE 128
Query: 409 QGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQD 588
G +SK + + I P P ++L ACDIR A
Sbjct: 129 VGP-----------FVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS 177
Query: 589 AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF--- 759
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S +
Sbjct: 178 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 236
Query: 760 PDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDV 939
+ + + PVA++ K+ + + + GL ++ + TKD
Sbjct: 237 QEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDR 296
Query: 940 IKSVQAAMEKK 972
++ + A EK+
Sbjct: 297 LEGLLAFKEKR 307
>ref|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus musculus].
Length = 544
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 291 VVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 349
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + +D R S + + I + TF +K P+ +
Sbjct: 350 DFIYFIRRLT----DDRKRESTKMADAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASI 402
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ F+ RK+ A EA
Sbjct: 403 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLFSGRKLTAQEAC 461
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 462 GKGLVSQVF 470
>ref|NP_034011.1| chromodomain Y-like protein isoform 1 [Mus musculus].
Length = 593
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N +E+ + A D D + V++S G +F G+
Sbjct: 340 VVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 398
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + +D R S + + I + TF +K P+ +
Sbjct: 399 DFIYFIRRLT----DDRKRESTKMADAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASI 451
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ F+ RK+ A EA
Sbjct: 452 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLFSGRKLTAQEAC 510
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 511 GKGLVSQVF 519
>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Mus musculus].
Length = 300
Score = 66.2 bits (160), Expect = 4e-11
Identities = 47/195 (24%), Positives = 86/195 (44%)
Frame = +1
Query: 190 LQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSG 369
L T Q + ++ L+ P +RNA++ A + + A+ D + ++IS G +F+SG
Sbjct: 47 LTSTRQQDGIRNIVLSNPRRRNALSLAMLKSLRSDILHEAESEDLKVIIISAEGPVFSSG 106
Query: 370 IDLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVD 549
DL ++ QG D +H + E +I P P+
Sbjct: 107 HDLKELTD----AQGRD-----YHAE-VFQTCSEVMMLIRNHPVPILAMVNGLATAAGCQ 156
Query: 550 LITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEA 729
L+ +CDI + + F V++GL + + +L E+ FT + A EA
Sbjct: 157 LVASCDIAVASDKSSFATPGVNVGLFCSTPAVALGRAVPRKVAL--EMLFTGEPISAQEA 214
Query: 730 LNSGLVSRIFPDQEV 774
L GL+S++ P++++
Sbjct: 215 LRHGLISKVVPEEQL 229
>ref|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus].
Length = 503
Score = 58.9 bits (141), Expect = 6e-09
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Frame = +1
Query: 223 HVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDI 399
H+ L+ + NA+ +E+ A D D + +++S G +F SG+D + +
Sbjct: 259 HILLSSQTSDNNALTPEIMKEVRRALCNAATD-DSKLLLLSAVGSVFCSGLDYSYLIGRL 317
Query: 400 FQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYC 579
+ ++ RI+ + + + + + KP+ ++ CDI +
Sbjct: 318 SSDRRKESTRIAEAIRDFVKAFIQF-------KKPIVVAINGPALGLGASILPLCDIVWA 370
Query: 580 AQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF 759
++ A+FQ I L + P+I+G +L NE+ F RK+ A EA + GLVS++F
Sbjct: 371 SEKAWFQTPYATIRLTPAGCSSYTFPQILG-VALANEMLFCGRKLTAQEACSRGLVSQVF 429
>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
musculus].
Length = 299
Score = 56.2 bits (134), Expect = 4e-08
Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 2/237 (0%)
Frame = +1
Query: 187 SLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTS 366
S+ + Q + + LN P K NA + +++ ++ + + ++I GA F S
Sbjct: 46 SIDLLKKQNGIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAKNTFCS 105
Query: 367 GIDLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXV 546
G DL + + P E +S + N ++++ + P
Sbjct: 106 GSDL-NAVKALSTP--ESGVALSMFMQNTLTRFM-------RLPLISVALVQGWAMGGGA 155
Query: 547 DLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADE 726
+L TACD R +++ + ++G+ G RL +IIG++ + L+ T K+ + E
Sbjct: 156 ELTTACDFRLMTEESVIRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTL-KLDSKE 214
Query: 727 ALNSGLVSRIF--PDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGL 891
ALN GL + D+ S P ++G K ++ +R+ + E L
Sbjct: 215 ALNIGLTDEVLQPSDETTALEQAQEWLEKFVSGPPQVIRGLKKSVCSARELYIEEAL 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,582,388
Number of extensions: 870977
Number of successful extensions: 2764
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2745
Number of HSP's successfully gapped: 16
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 536 e-153
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 91 8e-19
Alignment gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria... 77 2e-14
Alignment gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai... 70 2e-12
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 69 4e-12
Alignment gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m... 67 2e-11
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 65 6e-11
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 57 2e-08
Alignment gi|XP_001927544.3| PREDICTED: chromodomain Y-like protein, part... 48 1e-05
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 536 bits (1382), Expect = e-153
Identities = 277/312 (88%), Positives = 277/312 (88%)
Frame = +1
Query: 37 MAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVTAVQKH 216
MAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQ GHNYESLQVTAVQKH
Sbjct: 1 MAFFHRVRSLLTRRLTAPTNLSLSLHPMSSFTQEEASKAAPSEAPGHNYESLQVTAVQKH 60
Query: 217 VLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASD 396
VLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASD
Sbjct: 61 VLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASD 120
Query: 397 IFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRY 576
IFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPV VDLITACDIRY
Sbjct: 121 IFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRY 180
Query: 577 CAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRI 756
CAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRI
Sbjct: 181 CAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRI 240
Query: 757 FPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKD 936
FPDQEV IASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKD
Sbjct: 241 FPDQEVLLEAALALAAEIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKD 300
Query: 937 VIKSVQAAMEKK 972
VIKSVQAAMEKK
Sbjct: 301 VIKSVQAAMEKK 312
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 91.3 bits (225), Expect = 8e-19
Identities = 70/249 (28%), Positives = 111/249 (44%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+QLNRP+ NA+ + E+ +DP A+V++G K F +G D+ +M + FQ
Sbjct: 50 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 109
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
+ +S + + + KPV +L CDI Y +
Sbjct: 110 ---------DCYSGGFLSHWDH----LSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGE 156
Query: 586 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 765
A F E+ +G G QRL + +G +SL E+ T ++ A EA +GLVS+IFP
Sbjct: 157 KAQFGQPEILLGTIPGTGGTQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP- 214
Query: 766 QEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 945
E IAS S + K ++ + + S+AEGL K S T+D +
Sbjct: 215 VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKE 274
Query: 946 SVQAAMEKK 972
+ A +EK+
Sbjct: 275 GMTAFVEKR 283
>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
Length = 341
Score = 77.0 bits (188), Expect = 2e-14
Identities = 71/269 (26%), Positives = 113/269 (42%), Gaps = 2/269 (0%)
Frame = +1
Query: 172 GHNYESLQVTAVQK--HVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISG 345
G ++E + V K +V +QLNR + E+ +DP A+V++G
Sbjct: 81 GAHFEHIVVAKKGKSSNVGLIQLNRXXXXXXXCKGLILELNQALQAFEEDPAVGAIVLTG 140
Query: 346 AGKMFTSGIDLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXX 525
K F +G D+ +M + FQ + +S + + + KPV
Sbjct: 141 GEKAFAAGADIKEMQNQTFQ---------DCYSGGFLSHWDH----LSRVRKPVIAAVNG 187
Query: 526 XXXXXXVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTA 705
+L CDI Y + A F E+ G QRL + +G +SL E+ T
Sbjct: 188 YALGGGCELAMMCDIIYAGEKAQFGQPELLSETCPRTGGTQRLTRAVG-KSLTMEMVLTG 246
Query: 706 RKMMADEALNSGLVSRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAE 885
++ A EA +GLVS+IFP E IAS S + K ++ + + S+AE
Sbjct: 247 DRISAQEAKQAGLVSKIFP-VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAE 305
Query: 886 GLNYMKSWNMSMLQTKDVIKSVQAAMEKK 972
GL K S T+D + + A +EK+
Sbjct: 306 GLKLEKKLFYSTFATEDRKEGMTAFVEKR 334
>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 275
Score = 70.1 bits (170), Expect = 2e-12
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 4/256 (1%)
Frame = +1
Query: 217 VLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMAS 393
+ + +NRP RNA+ F +++ ++ +D R ++ SG +F +G DL +
Sbjct: 25 ITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE- 83
Query: 394 DIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIR 573
Q +V L L+++ I P P ++L ACD+R
Sbjct: 84 ---QMSEAEVGVFVQRLRGLMNE-------IAAFPAPTIAAMDGFALGGGLELALACDLR 133
Query: 574 YCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSR 753
A A + E GL G QRLP+ +G +L EL FT R++ +A GLV+
Sbjct: 134 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNH 192
Query: 754 IFPDQE---VXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSML 924
E I ++P+AV+ K+ + + +A G+ +
Sbjct: 193 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 252
Query: 925 QTKDVIKSVQAAMEKK 972
T+D ++ + A EK+
Sbjct: 253 PTRDRLEGMAAFREKR 268
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 68.9 bits (167), Expect = 4e-12
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+ LN P++RNA++ A + + A+ D + +VIS G +F+SG DL ++ ++
Sbjct: 604 IVLNNPKRRNALSLAMLKSLQSDLLHDAESRDLKVIVISAEGPVFSSGHDLKELTAE--- 660
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
QG D +H + E +I+ P P+ L+ +CDI +
Sbjct: 661 -QGPD-----YHA-EVFRACSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASD 713
Query: 586 DAFFQVKEVDIGL---AADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRI 756
+ F V IGL V + LP+ + E+ FT M A EAL GL+SR+
Sbjct: 714 KSSFATPGVTIGLFCSTPGVAVGRALPR-----KVALEMLFTGEPMSAQEALLHGLLSRV 768
Query: 757 FPDQEV 774
P++ +
Sbjct: 769 VPEERL 774
>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
scrofa].
Length = 338
Score = 67.0 bits (162), Expect = 2e-11
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 4/254 (1%)
Frame = +1
Query: 232 LNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQP 408
+NR +N++++ + + + + D R +++ S +F +G DL
Sbjct: 93 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK--------- 143
Query: 409 QGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQD 588
E V S + +SK + + I P P ++L ACDIR A
Sbjct: 144 --ERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASS 201
Query: 589 AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF--- 759
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S +
Sbjct: 202 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 260
Query: 760 PDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDV 939
+ + + PVA++ K+ + + + GL ++ + TKD
Sbjct: 261 QEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDR 320
Query: 940 IKSVQAAMEKKN*R 981
++ + A EK+ R
Sbjct: 321 LEGLLAFKEKRTPR 334
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 65.1 bits (157), Expect = 6e-11
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 1/195 (0%)
Frame = +1
Query: 184 ESLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFT 363
+SL VT+ + + ++LNRP K+NA+ +R+++ ++D R V++G+G +
Sbjct: 140 DSLVVTS-EDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 197
Query: 364 SGIDLVDMASDIFQPQGEDVARISWHL-HNLISKYQETFSVIEKCPKPVXXXXXXXXXXX 540
SG DL + DI + E+ A+ S L + + ++ + PKP+
Sbjct: 198 SGNDLTNF-KDIPPDKVEERAQSSAVLLRDFVDRFIDF-------PKPLIAVVNGPAVGI 249
Query: 541 XVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMA 720
V L+ D+ Y + A F +G + + + PK++G L F +K+ A
Sbjct: 250 SVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIF-GKKLTA 308
Query: 721 DEALNSGLVSRIFPD 765
EAL GLV+ +FPD
Sbjct: 309 REALAQGLVTAVFPD 323
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 57.0 bits (136), Expect = 2e-08
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Frame = +1
Query: 205 VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKIAQDPDCR-AVVISGAGKMFTSGIDL 378
V+ V +++N P + N + + E + N++ R AV+IS F +G D
Sbjct: 45 VKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD- 103
Query: 379 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLIT 558
++M S Q +V +IS + Q TF +EK KP+ ++L
Sbjct: 104 INMLSACTTSQ--EVTQIS-------QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAI 154
Query: 559 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+C R +D EV +G+ G QRLPK++G + ++ T R + AD+A
Sbjct: 155 SCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAK 213
Query: 733 NSGLVSRI 756
GLV ++
Sbjct: 214 KMGLVDQL 221
>ref|XP_001927544.3| PREDICTED: chromodomain Y-like protein, partial [Sus scrofa].
Length = 182
Score = 47.8 bits (112), Expect = 1e-05
Identities = 26/87 (29%), Positives = 41/87 (47%)
Frame = +1
Query: 499 KPVXXXXXXXXXXXXVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQS 678
KP+ ++ CD+ + + A+FQ G + D + PKI+G S
Sbjct: 23 KPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS 82
Query: 679 LVNELAFTARKMMADEALNSGLVSRIF 759
NE+ + RK+ A EA GLVS++F
Sbjct: 83 -ANEMLLSGRKLTAQEACGKGLVSQVF 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,221,152
Number of extensions: 664880
Number of successful extensions: 2056
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 9
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 427 e-119
Alignment gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H... 84 2e-16
Alignment gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei... 72 6e-13
Alignment gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p... 65 8e-11
Alignment gi|NP_004815.3| chromodomain Y-like protein isoform a [Homo sap... 65 1e-10
Alignment gi|NP_001137443.1| chromodomain Y-like protein isoform d [Homo ... 65 1e-10
Alignment gi|NP_001137442.1| chromodomain Y-like protein isoform d [Homo ... 65 1e-10
Alignment gi|NP_001001722.1| testis-specific chromodomain protein Y 2 [Ho... 64 2e-10
Alignment gi|NP_004816.1| testis-specific chromodomain protein Y 2 [Homo ... 64 2e-10
Alignment gi|NP_001003895.1| testis-specific chromodomain protein Y 1 iso... 62 1e-09
>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Homo sapiens].
Length = 328
Score = 427 bits (1097), Expect = e-119
Identities = 217/317 (68%), Positives = 248/317 (78%), Gaps = 2/317 (0%)
Frame = +1
Query: 28 AVAMAFFHRVRSLLTRRLTAPT--NLSLSLHPMSSFTQXXXXXXXXXXXXGHNYESLQVT 201
A + R+R LLTRRLT LS+SL S Q H+YESL+VT
Sbjct: 2 AAGIVASRRLRDLLTRRLTGSNYPGLSISLRLTGSSAQEEASGVALGEAPDHSYESLRVT 61
Query: 202 AVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLV 381
+ QKHVLHVQLNRP KRNAMN+ FWREMV CFNKI++D DCRAVVISGAGKMFT+GIDL+
Sbjct: 62 SAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLM 121
Query: 382 DMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITA 561
DMASDI QP+G+DVARISW+L ++I++YQETF+VIE+CPKPV VDL+TA
Sbjct: 122 DMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTA 181
Query: 562 CDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSG 741
CDIRYCAQDAFFQVKEVD+GLAADVGTLQRLPK+IGNQSLVNELAFTARKMMADEAL SG
Sbjct: 182 CDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSG 241
Query: 742 LVSRIFPDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSM 921
LVSR+FPD+EV I+SKSPVAVQ TK+NLLYSRDHSVAE LNY+ SWNMSM
Sbjct: 242 LVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSM 301
Query: 922 LQTKDVIKSVQAAMEKK 972
LQT+D++KSVQA E K
Sbjct: 302 LQTQDLVKSVQATTENK 318
>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
Length = 290
Score = 84.3 bits (207), Expect = 2e-16
Identities = 68/249 (27%), Positives = 108/249 (43%)
Frame = +1
Query: 226 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 405
+QLNRP+ NA+ E+ +DP A+V++G K F +G D+ +M + FQ
Sbjct: 50 IQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQ 109
Query: 406 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQ 585
SK+ + + + + KPV +L CDI Y +
Sbjct: 110 -------------DCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGE 156
Query: 586 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 765
A F E+ IG G QRL + +G +SL E+ T ++ A +A +GLVS+I P
Sbjct: 157 KAQFAQPEILIGTIPGAGGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKICP- 214
Query: 766 QEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 945
E IAS S + V K ++ + + ++ EG K S T D +
Sbjct: 215 VETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKE 274
Query: 946 SVQAAMEKK 972
+ A +EK+
Sbjct: 275 GMTAFVEKR 283
>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 1 [Homo sapiens].
Length = 292
Score = 72.4 bits (176), Expect = 6e-13
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 4/256 (1%)
Frame = +1
Query: 217 VLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMAS 393
+ + +NRP RNA+ F E++ ++ +D R ++ SG +F +G DL +
Sbjct: 42 ITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQ 101
Query: 394 DIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIR 573
G V R+ ++++ + P P ++L ACD+R
Sbjct: 102 MSEAEVGVFVQRLRGLMNDIAA-----------FPAPTIAAMDGFALGGGLELALACDLR 150
Query: 574 YCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSR 753
A A + E GL G QRLP+ +G +L EL FT R++ EA GLV+
Sbjct: 151 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGTEAHVLGLVNH 209
Query: 754 IFPDQE---VXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSML 924
E I ++P+AV+ K+ + + +A G+ +
Sbjct: 210 AVAQNEEGDAAYQRARALAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNI 269
Query: 925 QTKDVIKSVQAAMEKK 972
T+D ++ + A EK+
Sbjct: 270 PTRDRLEGMAAFREKR 285
>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
sapiens].
Length = 339
Score = 65.5 bits (158), Expect = 8e-11
Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 4/251 (1%)
Frame = +1
Query: 232 LNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQP 408
+NR +N++++ + + + + D R ++I S +F +G DL + A
Sbjct: 94 INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSE 153
Query: 409 QGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQD 588
G +SK + + I P P ++L ACDIR A
Sbjct: 154 VGP-----------FVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS 202
Query: 589 AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF--- 759
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S +
Sbjct: 203 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGKEAKAVGLISHVLEQN 261
Query: 760 PDQEVXXXXXXXXXXXIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDV 939
+ + + PVA++ K+ + + + GL ++ + TKD
Sbjct: 262 QEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDR 321
Query: 940 IKSVQAAMEKK 972
++ + A EK+
Sbjct: 322 LEGLLAFKEKR 332
>ref|NP_004815.3| chromodomain Y-like protein isoform a [Homo sapiens].
Length = 544
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N RE+ + A D D + V++S G +F G+
Sbjct: 291 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 349
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 350 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 402
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 403 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 461
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 462 GKGLVSQVF 470
>ref|NP_001137443.1| chromodomain Y-like protein isoform d [Homo sapiens].
Length = 412
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N RE+ + A D D + V++S G +F G+
Sbjct: 159 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 217
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 218 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 270
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 271 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 329
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 330 GKGLVSQVF 338
>ref|NP_001137442.1| chromodomain Y-like protein isoform d [Homo sapiens].
Length = 412
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +1
Query: 196 VTAVQKHVLHVQLN-RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGI 372
V Q H+ L+ + + N++N RE+ + A D D + V++S G +F G+
Sbjct: 159 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 217
Query: 373 DLVDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDL 552
D + + + + +++ + N ++ + + KP+ +
Sbjct: 218 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQF-------KKPIIVAVNGPAIGLGASI 270
Query: 553 ITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 732
+ CD+ + + A+FQ G + D + PKI+G S NE+ + RK+ A EA
Sbjct: 271 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 329
Query: 733 NSGLVSRIF 759
GLVS++F
Sbjct: 330 GKGLVSQVF 338
>ref|NP_001001722.1| testis-specific chromodomain protein Y 2 [Homo sapiens].
Length = 541
Score = 63.9 bits (154), Expect = 2e-10
Identities = 48/174 (27%), Positives = 76/174 (43%)
Frame = +1
Query: 238 RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQPQGE 417
R ++NA+N +EMV N A D D + V+ S AG +F G+D +
Sbjct: 303 RSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHL----RN 357
Query: 418 DVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQDAFF 597
D S + + I + TF +K P+ ++ CD+ + + A+F
Sbjct: 358 DRNTASLEMVDTIKNFVNTFIQFKK---PIVVSVNGPAIGLGASILPLCDLVWANEKAWF 414
Query: 598 QVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF 759
Q G + D + PK++G S NE+ RK+ A EA GLVS++F
Sbjct: 415 QTPYTTFGQSPDGCSSITFPKMMGKAS-ANEMLIAGRKLTAREACAKGLVSQVF 467
>ref|NP_004816.1| testis-specific chromodomain protein Y 2 [Homo sapiens].
Length = 541
Score = 63.9 bits (154), Expect = 2e-10
Identities = 48/174 (27%), Positives = 76/174 (43%)
Frame = +1
Query: 238 RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQPQGE 417
R ++NA+N +EMV N A D D + V+ S AG +F G+D +
Sbjct: 303 RSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHL----RN 357
Query: 418 DVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQDAFF 597
D S + + I + TF +K P+ ++ CD+ + + A+F
Sbjct: 358 DRNTASLEMVDTIKNFVNTFIQFKK---PIVVSVNGPAIGLGASILPLCDLVWANEKAWF 414
Query: 598 QVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF 759
Q G + D + PK++G S NE+ RK+ A EA GLVS++F
Sbjct: 415 QTPYTTFGQSPDGCSSITFPKMMGKAS-ANEMLIAGRKLTAREACAKGLVSQVF 467
>ref|NP_001003895.1| testis-specific chromodomain protein Y 1 isoform b [Homo sapiens].
Length = 554
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/174 (26%), Positives = 76/174 (43%)
Frame = +1
Query: 238 RPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQPQGE 417
R ++NA+N +E+V N A D D + V+ S AG +F G+D + +
Sbjct: 302 RSTEKNALNTEVIKEIVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNT 360
Query: 418 DVARISWHLHNLISKYQETFSVIEKCPKPVXXXXXXXXXXXXVDLITACDIRYCAQDAFF 597
S + + I + TF +K P+ ++ CD+ + + A+F
Sbjct: 361 ----ASLEMVDTIKNFVNTFIQFKK---PIVVSVNGPAIGLGASILPLCDLVWANEKAWF 413
Query: 598 QVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIF 759
Q G + D + PK++G S NE+ RK+ A EA GLVS++F
Sbjct: 414 QTPYTTFGQSPDGCSSITFPKMMGKAS-ANEMLIAGRKLTAREACAKGLVSQVF 466
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,587,774
Number of extensions: 1044237
Number of successful extensions: 3126
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3096
Number of HSP's successfully gapped: 21
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007620
(1009 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 400 e-109
>Sscrofa_Chr06
|| Length = 157765593
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 77 gattgacagcccccaccaacctcagccttagtcttcaccccatgagctcctttacacaag 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43177632 gattgacagcccccaccaacctcagccttagtcttcaccccatgagctcctttacacaag 43177573
Query: 137 aggaggcttccaaagctgctcccagcgaagctccaggtcacaactatgagtcccttcagg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43177572 aggaggcttccaaagctgctcccagcgaagctccaggtcacaactatgagtcccttcagg 43177513
Query: 197 tgacagctgtccagaaacatgtgcttcatgtgcagctaaaccggccagagaagagaaatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43177512 tgacagctgtccagaaacatgtgcttcatgtgcagctaaaccggccagagaagagaaatg 43177453
Query: 257 ccatgaacagagccttctggag 278
||||||||||||||||||||||
Sbjct: 43177452 ccatgaacagagccttctggag 43177431
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 365 cagggatcgaccttgtggacatggcttcggacatctttcagccccaaggagaagatgtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43168263 cagggatcgaccttgtggacatggcttcggacatctttcagccccaaggagaagatgtgg 43168204
Query: 425 cccgcatcagctggcacctccataatctcatctccaaataccaggagaccttcagcgtca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43168203 cccgcatcagctggcacctccataatctcatctccaaataccaggagaccttcagcgtca 43168144
Query: 485 tcgagaag 492
||||||||
Sbjct: 43168143 tcgagaag 43168136
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 277 agagagatggtggtgtgcttcaacaagatcgcacaggaccctgactgtcgtgcggtggtg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43177299 agagagatggtggtgtgcttcaacaagatcgcacaggaccctgactgtcgtgcggtggtg 43177240
Query: 337 atctctggtgcaggaaaaatgttcacttcagg 368
||||||||||||||||||||||||||||||||
Sbjct: 43177239 atctctggtgcaggaaaaatgttcacttcagg 43177208
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 2 attccggcgtttcagtcgcaatgacggcagtggcaatggcgttttttcacagagtgcgca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43178399 attccggcgtttcagtcgcaatgacggcagtggcaatggcgttttttcacagagtgcgca 43178340
Query: 62 gcttgctgactcggcg 77
||||||||||||||||
Sbjct: 43178339 gcttgctgactcggcg 43178324
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 605 aggaggtggacataggtttggcagcggatgtgggaaccctgcagcgactgcccaaaatca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43166854 aggaggtggacataggtttggcagcggatgtgggaaccctgcagcgactgcccaaaatca 43166795
Query: 665 ttggaaaccagag 677
|||||||||||||
Sbjct: 43166794 ttggaaaccagag 43166782
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 540 aggagtggatctcatcactgcctgtgacatccggtactgtgcccaggatgccttcttcca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43167844 aggagtggatctcatcactgcctgtgacatccggtactgtgcccaggatgccttcttcca 43167785
Query: 600 ggtgaagg 607
||||||||
Sbjct: 43167784 ggtgaagg 43167777
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 676 agcctggttaacgagttggccttcaccgcccgcaagatgatggctgacgaggc 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43166693 agcctggttaacgagttggccttcaccgcccgcaagatgatggctgacgaggc 43166641
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 491 agtgccctaagccggtgatcgctgccatccacgggggctgcattggtggagg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43168052 agtgccctaagccggtgatcgctgccatccacgggggctgcattggtggagg 43168001
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,653,720
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 1009
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 988
Effective length of database: 2,808,413,156
Effective search space: 2774712198128
Effective search space used: 2774712198128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)