Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015628.1| eukaryotic translation initiation factor 3 s... 660 0.0
Alignment gi|NP_001015567.1| serine-threonine kinase receptor-associated ... 102 6e-22
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 89 9e-18
Alignment gi|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa pr... 77 3e-14
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 75 1e-13
Alignment gi|NP_001094598.1| U3 small nucleolar RNA-associated protein 15... 72 9e-13
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 70 3e-12
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 69 8e-12
Alignment gi|XP_002699983.1| PREDICTED: bromodomain and WD repeat domain ... 63 5e-10
Alignment gi|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked... 63 5e-10
>ref|NP_001015628.1| eukaryotic translation initiation factor 3 subunit I [Bos taurus].
Length = 325
Score = 660 bits (1703), Expect = 0.0
Identities = 316/318 (99%), Positives = 318/318 (100%)
Frame = +3
Query: 60 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 239
MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
Sbjct: 1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60
Query: 240 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 419
DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
Sbjct: 61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120
Query: 420 FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 599
FVSFFDLRDPSQIDSNEPYM+IPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV
Sbjct: 121 FVSFFDLRDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 180
Query: 600 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 779
LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
Sbjct: 181 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 240
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI+SVAFHPDGKSY
Sbjct: 241 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY 300
Query: 960 SSGGEDGYVRIHYFDPQY 1013
SSGGEDGYVRIHYFDPQY
Sbjct: 301 SSGGEDGYVRIHYFDPQY 318
>ref|NP_001015567.1| serine-threonine kinase receptor-associated protein [Bos taurus].
Length = 350
Score = 102 bits (254), Expect = 6e-22
Identities = 81/322 (25%), Positives = 135/322 (41%), Gaps = 13/322 (4%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 416
+ D T +AD + ++WD +G +L L V+T F N ++ G
Sbjct: 67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 121
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 122 KLLRIYDLNKPEA----EP-KEISGHTSGIKKALWCSEDKQILS-------------ADD 163
Query: 597 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 746
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAP 223
Query: 747 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+NSA+L P + VV GG F+ + EE KGHFGPIH
Sbjct: 224 ATINSASLHPEKEFVVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 269
Query: 927 SVAFHPDGKSYSSGGEDGYVRI 992
V F PDG+ Y+SG EDG +R+
Sbjct: 270 CVRFSPDGELYASGSEDGTLRL 291
Score = 63.2 bits (152), Expect = 4e-10
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT--YMGHTG----AVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N GHT A+WC
Sbjct: 94 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHTSGIKKALWC 152
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 153 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 207
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ VS DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 208 FHSAVSL----DP--IKSFEA-------PATINSASLHPEKEFVVAGGEDFKLYKYDYNS 254
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 255 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 88.6 bits (218), Expect = 9e-18
Identities = 75/309 (24%), Positives = 127/309 (41%), Gaps = 2/309 (0%)
Frame = +3
Query: 72 LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCV--DADW 245
+L+ H +T + N+ G T + D +W + +GE L T GH V+ + + +
Sbjct: 87 VLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPY 146
Query: 246 DTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFV 425
K + TGS D +C+LW ETGK + ++A I+ S + Q
Sbjct: 147 GDK-IATGSFDKTCKLWSVETGKCYHTFRGHTA----------EIVCLSFNPQSTLVATG 195
Query: 426 SFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLV 605
S I S E + + ++I S + G II G + + A +G +
Sbjct: 196 SMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY 255
Query: 606 NVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYD 785
+ H +I+ + D ++ +T S D T KL+D+ + K T + L +D
Sbjct: 256 TLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAV---NGKCVATLTGHDDEILDSCFD 312
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+ G+ + T AR F A E +++GH G I ++F+P G +
Sbjct: 313 YT----GKLIATASADGT------ARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLT 362
Query: 966 GGEDGYVRI 992
G D RI
Sbjct: 363 GSSDKTARI 371
Score = 87.0 bits (214), Expect = 3e-17
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 2/225 (0%)
Frame = +3
Query: 36 RLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHT 215
+L + +G + L GH I + +N G+ + T + D V VW + G ++ T +GH
Sbjct: 202 KLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHC 261
Query: 216 GAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALL--KTNSAVRTCGFDFGGNIIMF 389
+ +WD +LTGS D +C+LWD GK +A L + + +C FD+ G +I
Sbjct: 262 AEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSC-FDYTGKLI-- 318
Query: 390 STDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGEL 569
+T G S + E K+ ++ +I+ + P G ++ G
Sbjct: 319 ATASADGTARIFS---------AATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTA 369
Query: 570 NQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLF 704
+ A++G+ L ++ H+ +I + + +T SKDNT +++
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 82.8 bits (203), Expect = 5e-16
Identities = 75/323 (23%), Positives = 136/323 (42%), Gaps = 3/323 (0%)
Frame = +3
Query: 33 CRLPSVFAGMKPILLQGHERSITQIKYNRE-GDLLFTVAKDPIVNVWYSVNGERLGTYMG 209
C+L +G + L+GH + I +N GD + T + D +W G+ T+ G
Sbjct: 116 CKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRG 175
Query: 210 HTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIM 386
HT + C+ + + V TGS D + +LWD ++G+++ L +SA + + F+ GN I+
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII 235
Query: 387 FSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGE 566
SF + D+ + + ++I+SAV+ I+ G
Sbjct: 236 TG-----------SFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKT 284
Query: 567 LNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLE-HQKTFRT 743
+ A +G+ + + H +I D + TAS D TA++F + T E K
Sbjct: 285 CKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGH 344
Query: 744 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI 923
E ++ + +P + ++ G + AR + + ++GH I
Sbjct: 345 EGEISKISFNPQGNRLLTGSSDKT--------------ARIWDAQTGQCLQVLEGHTDEI 390
Query: 924 HSVAFHPDGKSYSSGGEDGYVRI 992
S AF+ G +G +D RI
Sbjct: 391 FSCAFNYKGDIIITGSKDNTCRI 413
Score = 71.2 bits (173), Expect = 2e-12
Identities = 51/233 (21%), Positives = 107/233 (45%), Gaps = 1/233 (0%)
Frame = +3
Query: 21 FYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT 200
F C+L SV G +GH I + +N + L+ T + D +W +GE + T
Sbjct: 155 FDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFT 214
Query: 201 YMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGN 377
GH+ + + + ++TGS D++ +W+ +TG+++ L + A + + F++ +
Sbjct: 215 LTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCS 274
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHE 557
+I+ + M C +D + + + + +D +I + + G+ I
Sbjct: 275 LILTGS---MDKTC--KLWDAVNGKCVAT------LTGHDDEILDSCFDYTGKLIATASA 323
Query: 558 GGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT 716
G +SA + E + ++ H +I+ I + +T S D TA+++D+ T
Sbjct: 324 DGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQT 376
>ref|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Bos taurus].
Length = 358
Score = 77.0 bits (188), Expect = 3e-14
Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 14/317 (4%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGE--RLGTYMGHTGAVWCVDAD 242
+LL GHE + K++ G L + D ++ +W +V G+ T GH+GAV + +
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLW-NVYGDCDNYATLKGHSGAVMELHYN 119
Query: 243 WDTKHVLTGSADNSCRLWDCETGKQLALLKTN-SAVRTC-GFDFGGNIIMFSTDKQMGYQ 416
D + + S D + +WD ETG+++ LK + S V +C G ++ +D
Sbjct: 120 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT--- 176
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
V +D+R + I + + N ++ + + + II+G ++ + + +
Sbjct: 177 --VKLWDIRKKAAIQTFQ-------NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
Query: 597 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD---------STTLEHQKTFRTER 749
+ ++ H+ + + LS + + ++ + DNT +++D + E+
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEK 287
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDV-TTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ + SP+ + G + V TTS RI ++ GH G I+
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI---------------LYKLPGHAGSIN 332
Query: 927 SVAFHPDGKSYSSGGED 977
VAFHPD S D
Sbjct: 333 EVAFHPDEPIILSASSD 349
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 74.7 bits (182), Expect = 1e-13
Identities = 66/313 (21%), Positives = 140/313 (44%), Gaps = 7/313 (2%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L+GH +++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 37 LEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNLEISDVAWSSDSS 96
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ SF
Sbjct: 97 RLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISG-----------SF 145
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVL-VN 608
+ ++ + + + + +++ + G I++G G + A SG+ L
Sbjct: 146 DESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKAL 205
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
V + + ++ ++ S + + A+ DNT KL+D + KT+ + E+ A+ S
Sbjct: 206 VDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCVFASFSVT 265
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 266 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISAACHPTENII 312
Query: 960 SSG--GEDGYVRI 992
+S G D V++
Sbjct: 313 ASAALGNDKTVKL 325
>ref|NP_001094598.1| U3 small nucleolar RNA-associated protein 15 homolog [Bos taurus].
Length = 519
Score = 72.0 bits (175), Expect = 9e-13
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 2/232 (0%)
Frame = +3
Query: 111 YNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCR 290
+ ++G LL ++D V ++ L + GHT AV VD D HV++G+ D + +
Sbjct: 88 FRQDGRLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHSVDFTADKYHVVSGADDYTVK 147
Query: 291 LWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNE 470
LWD K++ K +S CG N +F T Y V FD R + S E
Sbjct: 148 LWDIPNSKEILTFKEHSDYVRCGCASKLNTDLFVTG---SYDHTVKMFDARTNQSVISVE 204
Query: 471 PYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SAKSGEVLVNVKEHSRQINDIQ 644
+ + S + P G +++ GG + K G++LV++K H + + +
Sbjct: 205 -------HGQPVESVLLFPSGGLLVSA--GGRYVKVWDMLKGGQLLVSLKNHHKTVTCLC 255
Query: 645 LSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLG 800
LS ++ S D K++ +T+ + +F + S AL+ + +V+G
Sbjct: 256 LSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYTASILSLALAHEDETIVVG 307
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 70.5 bits (171), Expect = 3e-12
Identities = 60/295 (20%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+D++ + + +P + +++ + G I++ G + SG+ L
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 48.9 bits (115), Expect = 8e-06
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 198 TYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGN 377
T GHT AV V + + + + SAD ++W GK KT S G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS-----GHKLGIS 91
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPS--QIDSNEPYMKIPCNDSKITSAVWGPLGECIIAG 551
+ +S+D + VS D + + S + + + + + + P I++G
Sbjct: 92 DVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 552 HEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQK 731
+ + K+G+ L + HS ++ + +RD ++ V++S D +++D+ + + K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 732 TFRTE--RPVNSAALSPNYDHVV 794
T + PV+ SPN +++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYIL 230
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 68.9 bits (167), Expect = 8e-12
Identities = 64/309 (20%), Positives = 126/309 (40%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH ++T + ++ L + + D + VW+ R + GH AV CV+
Sbjct: 16 KGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G + ++D + V +
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT-----VKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 STHRQKFLFSLSQHI------NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T A DNT K++D T L+H + VN+ + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLH--SAAVNALSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
++V + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLVTASSDSTLKI------LDLMEGRLLY--------TLHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
>ref|XP_002699983.1| PREDICTED: bromodomain and WD repeat domain containing 1-like [Bos
taurus].
Length = 1801
Score = 62.8 bits (151), Expect = 5e-10
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 19/327 (5%)
Frame = +3
Query: 81 GHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHV 260
GH S+ + ++R G +FT + D +V +W + +G L T GH+ + + +++ +
Sbjct: 178 GHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLI 237
Query: 261 LTGSADNSCRLWDCETGKQLALLKTNSA----VRTCGFDFGGNIIMFSTDKQMGYQCFVS 428
GS D R+W T +A+L+ +SA ++ C G + ST G CF
Sbjct: 238 AAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGAD-GTICFWQ 296
Query: 429 F------FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SA 584
+ F R + + P ++I C S +S G I G + Y +
Sbjct: 297 WHVKTMKFKDRPVKFTERSRPGVQISC--SSFSSG-----GMFITTGSTDHVIRIYYLGS 349
Query: 585 KSGEVLVNVKEHSRQINDIQL--SRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVN 758
+ E + ++ H+ ++ +Q + D FV+ S+D TA+++ E +
Sbjct: 350 EIPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKM 409
Query: 759 SAALSPNYDHVV--LGGGQEAMD--VTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ P+ + V L A D TT T + F + ++ + + GH +
Sbjct: 410 TGNNLPSGEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDEVF 469
Query: 927 SVAFHP-DGKSYSSGGEDGYVRIHYFD 1004
+ HP D + S G DG + + D
Sbjct: 470 VLEAHPFDQRIILSAGHDGNIFVWDLD 496
>ref|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 2
[Bos taurus].
Length = 376
Score = 62.8 bits (151), Expect = 5e-10
Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 16/266 (6%)
Frame = +3
Query: 90 RSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTG 269
+ +T + +N EG LL T + D +W + +G T H G ++ + + +L+
Sbjct: 88 KDVTSLDWNSEGTLLATGSYDGFARIW-TKDGNLASTLGQHKGPIFALKWNKKGNFILSA 146
Query: 270 SADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDP 449
D + +WD TG+ L +SA D+ N S M C
Sbjct: 147 GVDKTTIIWDAHTGEAKQLFPFHSA-PALDVDWQSNNTFASCSTDM---CI-------HV 195
Query: 450 SQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVKEHSRQ 629
++ + P + +++ + W P G + + + L +S K + +++ H+++
Sbjct: 196 CKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKE 255
Query: 630 INDIQLS---------RDMTMFVTASKDNTAKLFD-------STTLEHQKTFRTERPVNS 761
I I+ S M +AS D+T +L+D T +HQ+ PV S
Sbjct: 256 IYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQE------PVYS 309
Query: 762 AALSPNYDHVVLGGGQEAMDVTTTST 839
A SP+ ++ G + + + T T
Sbjct: 310 VAFSPDGRYLASGSFDKCVHIWNTQT 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,246,662
Number of extensions: 1354372
Number of successful extensions: 6714
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 6380
Number of HSP's successfully gapped: 81
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535328.1| PREDICTED: similar to Eukaryotic translation in... 659 0.0
Alignment gi|XP_850152.1| PREDICTED: similar to Eukaryotic translation in... 550 e-157
Alignment gi|XP_535995.2| PREDICTED: similar to Eukaryotic translation in... 189 4e-48
Alignment gi|XP_543790.1| PREDICTED: similar to serine/threonine kinase r... 101 1e-21
Alignment gi|XP_866613.1| PREDICTED: similar to serine/threonine kinase r... 95 1e-19
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 86 6e-17
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 77 3e-14
Alignment gi|XP_535274.2| PREDICTED: similar to Src-associated protein SA... 71 2e-12
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 70 3e-12
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 66 7e-11
>ref|XP_535328.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
receptor interacting protein 1) (TRIP-1) [Canis
familiaris].
Length = 325
Score = 659 bits (1699), Expect = 0.0
Identities = 315/318 (99%), Positives = 318/318 (100%)
Frame = +3
Query: 60 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 239
MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGH+GAVWCVDA
Sbjct: 1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHSGAVWCVDA 60
Query: 240 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 419
DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
Sbjct: 61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120
Query: 420 FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 599
FVSFFDLRDPSQID+NEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV
Sbjct: 121 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 180
Query: 600 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 779
LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
Sbjct: 181 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 240
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI+SVAFHPDGKSY
Sbjct: 241 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY 300
Query: 960 SSGGEDGYVRIHYFDPQY 1013
SSGGEDGYVRIHYFDPQY
Sbjct: 301 SSGGEDGYVRIHYFDPQY 318
>ref|XP_850152.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
receptor interacting protein 1) (TRIP-1) [Canis
familiaris].
Length = 377
Score = 550 bits (1417), Expect = e-157
Identities = 275/322 (85%), Positives = 284/322 (88%)
Frame = +3
Query: 30 RCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMG 209
+ RLPS MKPILLQG ERSI QIKYNREG+LLFTVAKDPIVNVWYS+NGERLGTYMG
Sbjct: 76 KLRLPSSQRRMKPILLQGQERSIMQIKYNREGELLFTVAKDPIVNVWYSMNGERLGTYMG 135
Query: 210 HTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMF 389
HT DNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMF
Sbjct: 136 HT--------------------DNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMF 175
Query: 390 STDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGEL 569
STDKQMGYQCFVSFFDLRDPSQID+NEPY+KIPCN+SKITSAVWGPLGECIIAGHE EL
Sbjct: 176 STDKQMGYQCFVSFFDLRDPSQIDNNEPYIKIPCNNSKITSAVWGPLGECIIAGHEDREL 235
Query: 570 NQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTER 749
NQYSAKSGEVLVNVKEHS+QINDIQLSRDMTMFVTASKDNTAKLFDS TLE QKTF TE
Sbjct: 236 NQYSAKSGEVLVNVKEHSQQINDIQLSRDMTMFVTASKDNTAKLFDSKTLEDQKTFWTEH 295
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHS 929
VNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHL FEEEFGRVKGH GPI+S
Sbjct: 296 LVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLTFEEEFGRVKGHLGPINS 355
Query: 930 VAFHPDGKSYSSGGEDGYVRIH 995
VAFHP+GKSYSSGGE GYV IH
Sbjct: 356 VAFHPNGKSYSSGGEGGYVHIH 377
>ref|XP_535995.2| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
receptor interacting protein 1) (TRIP-1) [Canis
familiaris].
Length = 119
Score = 189 bits (480), Expect = 4e-48
Identities = 93/104 (89%), Positives = 94/104 (90%)
Frame = +3
Query: 702 FDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAF 881
FD TLEHQKTFRTERPVNS A SPNYD VVLGGGQEA VTTTSTRIGKFEARFFHLAF
Sbjct: 10 FDPPTLEHQKTFRTERPVNSDAFSPNYDCVVLGGGQEAT-VTTTSTRIGKFEARFFHLAF 68
Query: 882 EEEFGRVKGHFGPIHSVAFHPDGKSYSSGGEDGYVRIHYFDPQY 1013
EEEFGRVKGHF PI+SVAFHPDGKSYSSGGEDGYV IHY DPQY
Sbjct: 69 EEEFGRVKGHFRPINSVAFHPDGKSYSSGGEDGYVHIHYLDPQY 112
>ref|XP_543790.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 1 [Canis familiaris].
Length = 350
Score = 101 bits (251), Expect = 1e-21
Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 13/322 (4%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 416
+ D T +AD + ++WD +G +L L V+T F N ++ G
Sbjct: 67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 121
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 122 KLLRIYDLNKPEA----EP-KEISGHTSGIKKALWCSEDKQILS-------------ADD 163
Query: 597 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 746
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAP 223
Query: 747 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+NSA+L P + +V GG F+ + EE KGHFGPIH
Sbjct: 224 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 269
Query: 927 SVAFHPDGKSYSSGGEDGYVRI 992
V F PDG+ Y+SG EDG +R+
Sbjct: 270 CVRFSPDGELYASGSEDGTLRL 291
Score = 62.8 bits (151), Expect = 6e-10
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT--YMGHTG----AVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N GHT A+WC
Sbjct: 94 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHTSGIKKALWC 152
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 153 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 207
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ VS DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 208 FHSAVSL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 254
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 255 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294
>ref|XP_866613.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 2 [Canis familiaris].
Length = 362
Score = 95.1 bits (235), Expect = 1e-19
Identities = 80/334 (23%), Positives = 135/334 (40%), Gaps = 25/334 (7%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSV------------NGERLGT 200
P+ GH R + + ++ G L + K V + G+ +GT
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKGERVTCLFKCVLDGKPMLRQGDTGDWIGT 66
Query: 201 YMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNI 380
++GH GAVW + D T +AD + ++WD +G +L L V+T F N
Sbjct: 67 FLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNY 126
Query: 381 IMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEG 560
++ G + +DL P EP +I + S I A+W + I++
Sbjct: 127 LLTG-----GQDKLLRIYDLNKPEA----EP-KEISGHTSGIKKALWCSEDKQILS---- 172
Query: 561 GELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDS 710
+ + V + +H+ L+ +M++ + + + +
Sbjct: 173 ---------ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSA 223
Query: 711 TTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEE 890
+L+ K+F +NSA+L P + +V GG F+ + EE
Sbjct: 224 VSLDPIKSFEAPATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEE 269
Query: 891 FGRVKGHFGPIHSVAFHPDGKSYSSGGEDGYVRI 992
KGHFGPIH V F PDG+ Y+SG EDG +R+
Sbjct: 270 LESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 303
Score = 62.8 bits (151), Expect = 6e-10
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT--YMGHTG----AVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N GHT A+WC
Sbjct: 106 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHTSGIKKALWC 164
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 165 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 219
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ VS DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 220 FHSAVSL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 266
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 267 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 306
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 85.9 bits (211), Expect = 6e-17
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 2/225 (0%)
Frame = +3
Query: 36 RLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHT 215
+L + +G + L+GH I + +N GD + T + D V VW + G ++ T +GH
Sbjct: 202 KLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHC 261
Query: 216 GAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALL--KTNSAVRTCGFDFGGNIIMF 389
+ +WD +LTGS D +C LWD GK +A L + + +C FD+ G +I
Sbjct: 262 AEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSC-FDYTGKLI-- 318
Query: 390 STDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGEL 569
+T G S + ++++ +E +I+ + P G ++ G
Sbjct: 319 ATASADGTARVFSAATRKCLTKLEGHE---------GEISKISFNPQGNRLLTGSADETA 369
Query: 570 NQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLF 704
+ A++G+ L ++ H+ +I + + +T SKDNT +++
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 84.0 bits (206), Expect = 2e-16
Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 2/309 (0%)
Frame = +3
Query: 72 LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCV--DADW 245
+L+ H +T + N+ G T + D +W + +GE L T GH V+ + + +
Sbjct: 87 VLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPY 146
Query: 246 DTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFV 425
K + TGS D +C+LW ETGK + ++A I+ S + Q
Sbjct: 147 GDK-IATGSFDKTCKLWSVETGKCYHTFRGHTA----------EIVCLSFNPQSTLVATG 195
Query: 426 SFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLV 605
S I S E + + ++I S + G+ I+ G + + A +G +
Sbjct: 196 SMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY 255
Query: 606 NVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYD 785
+ H +I+ + D ++ +T S D T L+D++ + K T + L +D
Sbjct: 256 TLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDAS---NGKCVATLTGHDDEILDSCFD 312
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+ G+ + T AR F A + +++GH G I ++F+P G +
Sbjct: 313 YT----GKLIATASADGT------ARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLT 362
Query: 966 GGEDGYVRI 992
G D RI
Sbjct: 363 GSADETARI 371
Score = 80.1 bits (196), Expect = 4e-15
Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 3/323 (0%)
Frame = +3
Query: 33 CRLPSVFAGMKPILLQGHERSITQIKYNRE-GDLLFTVAKDPIVNVWYSVNGERLGTYMG 209
C+L +G + L+GH + I +N GD + T + D +W G+ T+ G
Sbjct: 116 CKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRG 175
Query: 210 HTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIM 386
HT + C+ + + V TGS D + +LWD ++G+++ L+ +SA + + F+ G+ I+
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV 235
Query: 387 FSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGE 566
SF + D+ + + ++I+SA++ I+ G
Sbjct: 236 TG-----------SFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKT 284
Query: 567 LNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLE-HQKTFRT 743
+ A +G+ + + H +I D + TAS D TA++F + T + K
Sbjct: 285 CMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGH 344
Query: 744 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI 923
E ++ + +P + ++ G E AR + + ++GH I
Sbjct: 345 EGEISKISFNPQGNRLLTGSADET--------------ARIWDAQTGQCLQVLEGHTDEI 390
Query: 924 HSVAFHPDGKSYSSGGEDGYVRI 992
S AF+ G +G +D RI
Sbjct: 391 FSCAFNYKGDIIITGSKDNTCRI 413
Score = 71.6 bits (174), Expect = 1e-12
Identities = 53/233 (22%), Positives = 107/233 (45%), Gaps = 1/233 (0%)
Frame = +3
Query: 21 FYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT 200
F C+L SV G +GH I + +N + L+ T + D +W +GE + T
Sbjct: 155 FDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFT 214
Query: 201 YMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGN 377
GH+ + + + ++TGS D++ +W+ +TG+++ L + A + + F++ +
Sbjct: 215 LRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCS 274
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHE 557
+I+ + M C L D S + + + +D +I + + G+ I
Sbjct: 275 LILTGS---MDKTCM-----LWDAS---NGKCVATLTGHDDEILDSCFDYTGKLIATASA 323
Query: 558 GGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT 716
G +SA + + L ++ H +I+ I + +T S D TA+++D+ T
Sbjct: 324 DGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQT 376
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris].
Length = 358
Score = 77.0 bits (188), Expect = 3e-14
Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 14/317 (4%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGE--RLGTYMGHTGAVWCVDAD 242
+LL GHE + K++ G L + D ++ +W +V G+ T GH+GAV + +
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLW-NVYGDCDNYATLKGHSGAVMELHYN 119
Query: 243 WDTKHVLTGSADNSCRLWDCETGKQLALLKTN-SAVRTC-GFDFGGNIIMFSTDKQMGYQ 416
D + + S D + +WD ETG+++ LK + S V +C G ++ +D
Sbjct: 120 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT--- 176
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
V +D+R + I + + N ++ + + + II+G ++ + + +
Sbjct: 177 --VKLWDIRKKAAIQTFQ-------NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
Query: 597 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD---------STTLEHQKTFRTER 749
+ ++ H+ + + LS + + ++ + DNT +++D + E+
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDV-TTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ + SP+ + G + V TTS RI ++ GH G I+
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI---------------LYKLPGHAGSIN 332
Query: 927 SVAFHPDGKSYSSGGED 977
VAFHPD S D
Sbjct: 333 EVAFHPDEPIILSASSD 349
>ref|XP_535274.2| PREDICTED: similar to Src-associated protein SAW [Canis
familiaris].
Length = 488
Score = 71.2 bits (173), Expect = 2e-12
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 2/232 (0%)
Frame = +3
Query: 111 YNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCR 290
+ ++G LL ++D V ++ L + GHT AV VD D HV++G+ D + +
Sbjct: 88 FRQDGKLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVK 147
Query: 291 LWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNE 470
LWD K++ K +S CG N +F T Y V FD R + S E
Sbjct: 148 LWDIPNSKEIVTFKEHSDYVRCGCASKLNPDLFVTG---SYDHTVKMFDARTNQSVISVE 204
Query: 471 PYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SAKSGEVLVNVKEHSRQINDIQ 644
+ + S + P G + + GG + K G++LV++K H + + +
Sbjct: 205 -------HGQPVESVLLFPSGGLLASA--GGRYVKIWDMLKGGQLLVSLKNHHKTVTCLY 255
Query: 645 LSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLG 800
LS ++ S D K++ +T+ + +F + S AL+ + +V+G
Sbjct: 256 LSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALAHEDETIVVG 307
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 70.5 bits (171), Expect = 3e-12
Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH +IT + ++ L + + D + VW+ R + GH AV CV+
Sbjct: 16 KGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G ++ ++D + V +
Sbjct: 76 LASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKT-----VKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 STHRQKFLFSLSQHI------NWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T AS DNT K++D T L+H + VN+ + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLH--SAAVNALSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+++ + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLLTASSDSTLKI------LDLMEGRLLY--------TLHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 65.9 bits (159), Expect = 7e-11
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 6/222 (2%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
+ GH+ I+ + ++ + +LL + + D + +W +G+ L T GH+ V+C + + +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++GS D S R+WD +TGK L L +S V F+ G++I+ S+
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS------------ 190
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSK--ITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLV 605
+D ++ MK+ +D ++ + P G+ I+A L + G+ L
Sbjct: 191 YDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 250
Query: 606 NVKEHSRQINDIQLSRDMT---MFVTASKDNTAKLFDSTTLE 722
H + I + +T V+ S+DN +++ T E
Sbjct: 251 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 64.7 bits (156), Expect = 2e-10
Identities = 59/295 (20%), Positives = 135/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY-SAKSGEVLVN 608
+D++ + + +P + +++ + G I++ G + +A S + +
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLI 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 LDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,192,994
Number of extensions: 1385035
Number of successful extensions: 6787
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 6417
Number of HSP's successfully gapped: 95
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061269.1| eukaryotic translation initiation factor 3 subu... 659 0.0
Alignment gi|NP_035629.2| serine-threonine kinase receptor-associated pro... 102 7e-22
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 77 2e-14
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 76 4e-14
Alignment gi|NP_849249.1| U3 small nucleolar RNA-associated protein 15 ho... 75 7e-14
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 70 2e-12
Alignment gi|NP_082001.2| WD repeat domain 69 [Mus musculus]. 70 3e-12
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 69 9e-12
Alignment gi|NP_035845.1| WD repeat-containing protein 1 [Mus musculus]. 64 3e-10
Alignment gi|NP_001074946.1| bromodomain and WD repeat-containing protein... 64 3e-10
>ref|NP_061269.1| eukaryotic translation initiation factor 3 subunit I [Mus musculus].
Length = 325
Score = 659 bits (1699), Expect = 0.0
Identities = 315/318 (99%), Positives = 317/318 (99%)
Frame = +3
Query: 60 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 239
MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
Sbjct: 1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60
Query: 240 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 419
DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
Sbjct: 61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120
Query: 420 FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 599
FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGEC+IAGHE GELNQYSAKSGEV
Sbjct: 121 FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECVIAGHESGELNQYSAKSGEV 180
Query: 600 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 779
LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
Sbjct: 181 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 240
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI+SVAFHPDGKSY
Sbjct: 241 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY 300
Query: 960 SSGGEDGYVRIHYFDPQY 1013
SSGGEDGYVRIHYFDPQY
Sbjct: 301 SSGGEDGYVRIHYFDPQY 318
>ref|NP_035629.2| serine-threonine kinase receptor-associated protein [Mus musculus].
Length = 350
Score = 102 bits (253), Expect = 7e-22
Identities = 81/322 (25%), Positives = 135/322 (41%), Gaps = 13/322 (4%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 416
+ D T +AD + ++WD +G +L L V+T F N ++ G
Sbjct: 67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 121
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 122 KLLRIYDLNKPEA----EP-KEISGHTSGIKKALWCSDDKQILS-------------ADD 163
Query: 597 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 746
V + +H+ L+ +M++ + + + + +LE K+F
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAP 223
Query: 747 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+NSA+L P + +V GG F+ + EE KGHFGPIH
Sbjct: 224 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 269
Query: 927 SVAFHPDGKSYSSGGEDGYVRI 992
V F PDG+ Y+SG EDG +R+
Sbjct: 270 CVRFSPDGELYASGSEDGTLRL 291
Score = 63.9 bits (154), Expect = 2e-10
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT--YMGHTG----AVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N GHT A+WC
Sbjct: 94 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHTSGIKKALWC 152
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
D K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 153 SD----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 207
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ VS EP + I SA P E ++AG E +L +Y S
Sbjct: 208 FHSAVSL------------EPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 254
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 255 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 77.4 bits (189), Expect = 2e-14
Identities = 69/297 (23%), Positives = 134/297 (45%), Gaps = 5/297 (1%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWD 248
+ L GH +I+ +K++ G+ L + A D ++ +W + +G T GH+ + V D
Sbjct: 33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSD 92
Query: 249 TKHVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFV 425
+ +++ S D + ++WD +GK L LK +S V C F+ N+I+
Sbjct: 93 SSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSG----------- 141
Query: 426 SFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLV 605
SF + ++ + + + + I++ + G I++G G + A SG+ L
Sbjct: 142 SFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLR 201
Query: 606 NV-KEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALS 773
+ E + ++ ++ S + +TA+ DNT KL+D + KT+ + E+ A+ S
Sbjct: 202 TLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFS 261
Query: 774 PNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
V+ G ++ M ++L +E R++GH + S A HP
Sbjct: 262 VTGRKWVVSGSEDNM-------------VYIWNLQTKEIVQRLQGHTDVVISAACHP 305
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 76.3 bits (186), Expect = 4e-14
Identities = 66/316 (20%), Positives = 134/316 (42%), Gaps = 13/316 (4%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGE--RLGTYMGHTGAVWCVDAD 242
+LL GHE + K++ G L + D ++ +W +V G+ T GH+GAV + +
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLW-NVYGDCDNYATLKGHSGAVMELHYN 119
Query: 243 WDTKHVLTGSADNSCRLWDCETGKQLALLKTN-SAVRTC-GFDFGGNIIMFSTDKQMGYQ 416
D + + S D + +WD ETG+++ LK + S V +C G ++ +D
Sbjct: 120 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT--- 176
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
V +D+R + + + + N ++ + + + II+G ++ + + +
Sbjct: 177 --VKLWDIRKKAAVQTFQ-------NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
Query: 597 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD---------STTLEHQKTFRTER 749
+ ++ H+ + + LS + + ++ + DNT +++D + E+
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHS 929
+ + SP+ + G + V T++R ++ GH G I+
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSR--------------RVLYKLPGHAGSINE 333
Query: 930 VAFHPDGKSYSSGGED 977
VAFHPD S D
Sbjct: 334 VAFHPDEPIILSASSD 349
>ref|NP_849249.1| U3 small nucleolar RNA-associated protein 15 homolog [Mus
musculus].
Length = 528
Score = 75.5 bits (184), Expect = 7e-14
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 3/233 (1%)
Frame = +3
Query: 111 YNREGDLLFTVAKDPIVNVWYSVNGER-LGTYMGHTGAVWCVDADWDTKHVLTGSADNSC 287
+ ++G LL ++D +V + + +NG L + GHT AV VD D HV++G+ D +
Sbjct: 88 FRQDGQLLVAGSEDGVVQL-FDINGRAPLRQFEGHTKAVHTVDFTADNYHVVSGADDYTV 146
Query: 288 RLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSN 467
+LWD K++ K +S CG N +F T Y V FD R +
Sbjct: 147 KLWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFVTG---SYDHTVKIFDARTNKNVLCV 203
Query: 468 EPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SAKSGEVLVNVKEHSRQINDI 641
E + + S + P G +++ GG + K G++LV++K H + + +
Sbjct: 204 E-------HGQPVESVLLFPSGGLLVSA--GGRYVKVWDMLKGGQLLVSLKNHHKTVTCL 254
Query: 642 QLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLG 800
LS ++ S D K++ +T+ + +F + S ALS + +V+G
Sbjct: 255 CLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHQDETIVVG 307
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 70.5 bits (171), Expect = 2e-12
Identities = 60/295 (20%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+D++ + + +P + +++ + G I++ G + SG+ L
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 48.9 bits (115), Expect = 7e-06
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 198 TYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGN 377
T GHT AV V + + + + SAD ++W GK KT S G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS-----GHKLGIS 91
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPS--QIDSNEPYMKIPCNDSKITSAVWGPLGECIIAG 551
+ +S+D + VS D + + S + + + + + + P I++G
Sbjct: 92 DVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 552 HEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQK 731
+ + K+G+ L + HS ++ + +RD ++ V++S D +++D+ + + K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 732 TFRTE--RPVNSAALSPNYDHVV 794
T + PV+ SPN +++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYIL 230
>ref|NP_082001.2| WD repeat domain 69 [Mus musculus].
Length = 310
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 24/235 (10%)
Frame = +3
Query: 72 LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDAD--- 242
+L+ H +T + N+ G T + D VW + +GE L T GH V+ + +
Sbjct: 87 VLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHKNVVYAIAFNNPY 146
Query: 243 -------------------WDTKHVLTGSADNSCRLWDCETGKQLALL--KTNSAVRTCG 359
WD +LTGS D +C LWD +GK +A L + + +C
Sbjct: 147 GKVHTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSC- 205
Query: 360 FDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGEC 539
FD+ G +I +T G + + ++++ +E +I+ + P G
Sbjct: 206 FDYTGKLI--ATASADGTARVYNATTRKCVTKLEGHE---------GEISKISFNPQGNR 254
Query: 540 IIAGHEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLF 704
++ G + ++G+ L ++ H+ +I + + +T SKDN+ +++
Sbjct: 255 LLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIW 309
Score = 59.3 bits (142), Expect = 5e-09
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Frame = +3
Query: 33 CRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGH 212
C L +G L GH+ I ++ G L+ T + D V+ + + + GH
Sbjct: 180 CMLWDATSGKYVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCVTKLEGH 239
Query: 213 TGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIM 386
G + + + +LTGS+D + R+WD +TG+ L +L+ ++ + +C F++ GNI++
Sbjct: 240 EGEISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVI 298
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 68.6 bits (166), Expect = 9e-12
Identities = 62/309 (20%), Positives = 128/309 (41%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH ++T + ++ L + + D + +W+ R + GH AV CV+
Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G ++ ++D + V +
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKT-----VKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 STHRQRFLFSLTQHI------NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T A DNT K++D+ T L+H + VN+ + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAA--VNALSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+++ + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLITASSDSTLKI------LDLMEGRLLYT--------LHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
>ref|NP_035845.1| WD repeat-containing protein 1 [Mus musculus].
Length = 606
Score = 63.5 bits (153), Expect = 3e-10
Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 23/327 (7%)
Frame = +3
Query: 84 HERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGER---LGTYMGHTGAVWCVDADWDTK 254
H R + ++++ +G+ T + D + ++ GE+ LG H G ++ + D+
Sbjct: 188 HSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAISWSPDST 247
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG-------- 410
H+L+ S D + ++WD + NS V T F G N++ D+Q+G
Sbjct: 248 HLLSASGDKTSKIWD---------VNVNSVVST--FPMGSNVL----DQQLGCLWQKDHL 292
Query: 411 ----YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLG--ECIIAGHEGGELN 572
++++ D +PS+ P I + I G I +G G +N
Sbjct: 293 LSISLSGYINYLDKNNPSK-----PLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHIN 347
Query: 573 QYSAKSGEV-LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEH--QKTFRT 743
+ +++GE + K H+ Q++ + ++ + V+ S D+T + + T ++ Q +
Sbjct: 348 YWDSETGENDSFSGKGHTNQVSRMTVN-ESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKL 406
Query: 744 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHL---AFEEEFGRVKGHF 914
+ A+ P VV+ GQ + K + + F + +E E
Sbjct: 407 DVQPKCVAVGPGGYTVVVCIGQIVLL---------KDQKKCFSIDNPGYEPEV------- 450
Query: 915 GPIHSVAFHPDGKSYSSGGEDGYVRIH 995
VA HP G + + GG DG VR++
Sbjct: 451 -----VAVHPGGDTVAVGGTDGNVRVY 472
>ref|NP_001074946.1| bromodomain and WD repeat-containing protein 3 [Mus musculus].
Length = 1799
Score = 63.5 bits (153), Expect = 3e-10
Identities = 75/327 (22%), Positives = 136/327 (41%), Gaps = 19/327 (5%)
Frame = +3
Query: 81 GHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHV 260
GH S+ + ++R G +FT + D +V +W + +G L T GH+ + + +++ +
Sbjct: 178 GHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLI 237
Query: 261 LTGSADNSCRLWDCETGKQLALLKTNSA----VRTCGFDFGGNIIMFSTDKQMGYQCFVS 428
GS D R+W T +A+L+ +SA ++ C G + ST G CF
Sbjct: 238 AAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGAD-GTICFWQ 296
Query: 429 F------FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SA 584
+ F R + + P ++I C S +S G I G + Y +
Sbjct: 297 WHVKTMKFRDRPVKFTERSRPGVQISC--SSFSSG-----GMFITTGSTDHVIRIYYLGS 349
Query: 585 KSGEVLVNVKEHSRQINDIQL--SRDMTMFVTASKDNTAKLFDSTTLEHQK-TFRTERPV 755
+ E + ++ H+ ++ +Q + D FV+ S+D TA+++ E + +
Sbjct: 350 EIPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKM 409
Query: 756 NSAALSPNYDHVV-LGGGQEAMD--VTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ L+ D V L A D TT T + F + ++ + + GH +
Sbjct: 410 SGNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDEVF 469
Query: 927 SVAFHP-DGKSYSSGGEDGYVRIHYFD 1004
+ HP D + S G DG + I D
Sbjct: 470 VLEAHPFDQRIILSAGHDGNIFIWDLD 496
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,132,593
Number of extensions: 1152316
Number of successful extensions: 6199
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 5833
Number of HSP's successfully gapped: 83
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356351.1| PREDICTED: hypothetical protein LOC100622188... 107 2e-23
Alignment gi|XP_003355612.1| PREDICTED: serine-threonine kinase receptor-... 101 9e-22
Alignment gi|XP_003133751.2| PREDICTED: WD repeat-containing protein 69-l... 81 1e-15
Alignment gi|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotei... 77 2e-14
Alignment gi|NP_001230134.1| U3 small nucleolar RNA-associated protein 15... 71 1e-12
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 70 2e-12
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 70 2e-12
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 66 3e-11
Alignment gi|XP_003135260.2| PREDICTED: bromodomain and WD repeat-contain... 63 3e-10
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 63 3e-10
>ref|XP_003356351.1| PREDICTED: hypothetical protein LOC100622188 [Sus scrofa].
Length = 282
Score = 107 bits (266), Expect = 2e-23
Identities = 57/74 (77%), Positives = 58/74 (78%)
Frame = +3
Query: 6 QTLFRFYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG 185
QTLFRFYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDP+ SV
Sbjct: 204 QTLFRFYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPV-----SVR- 257
Query: 186 ERLGTYMGHTGAVW 227
R G HT W
Sbjct: 258 RRAGRRDIHTEGAW 271
>ref|XP_003355612.1| PREDICTED: serine-threonine kinase receptor-associated protein-like
[Sus scrofa].
Length = 350
Score = 101 bits (251), Expect = 9e-22
Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 13/322 (4%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 416
+ D T +AD + ++WD +G +L L V+T F N ++ G
Sbjct: 67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 121
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 122 KLLRIYDLNKPEA----EP-KEISGHSSGIKKALWCSEDKQILS-------------ADD 163
Query: 597 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 746
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAP 223
Query: 747 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+NSA+L P + +V GG F+ + EE KGHFGPIH
Sbjct: 224 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 269
Query: 927 SVAFHPDGKSYSSGGEDGYVRI 992
V F PDG+ Y+SG EDG +R+
Sbjct: 270 CVRFSPDGELYASGSEDGTLRL 291
Score = 62.4 bits (150), Expect = 4e-10
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG------ERLGTYMGHTGAVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N E G G A+WC
Sbjct: 94 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHSSGIKKALWC 152
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 153 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 207
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ +S DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 208 FHSAISL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 254
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 255 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294
>ref|XP_003133751.2| PREDICTED: WD repeat-containing protein 69-like [Sus scrofa].
Length = 271
Score = 80.9 bits (198), Expect = 1e-15
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 1/212 (0%)
Frame = +3
Query: 72 LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDT 251
++ GH I + +N GD + T + D V VW + G +L T +GH + +WD
Sbjct: 70 IIHGHSAEIISLSFNTSGDRIITGSFDHTVIVWDAGTGRKLYTLIGHCAEISSALFNWDC 129
Query: 252 KHVLTGSADNSCRLWDCETGKQLALLKT-NSAVRTCGFDFGGNIIMFSTDKQMGYQCFVS 428
+LTGS D +C LWD K +A L + + FD+ G +I +T G S
Sbjct: 130 SLILTGSMDKTCMLWDATNEKCVATLTCHDDEILDSCFDYTGKLI--ATASADGTARVFS 187
Query: 429 FFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN 608
+ ++++ +E +I+ + P G ++ G + A++G+ L
Sbjct: 188 AATRKCITKLEGHE---------GEISKISFNPQGNRLLTGSADKTARIWDAQTGQCLQV 238
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLF 704
++ H+ +I + + +T SKDNT +++
Sbjct: 239 LEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 270
>ref|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 358
Score = 77.0 bits (188), Expect = 2e-14
Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 14/317 (4%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGE--RLGTYMGHTGAVWCVDAD 242
+LL GHE + K++ G L + D ++ +W +V G+ T GH+GAV + +
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLW-NVYGDCDNYATLKGHSGAVMELHYN 119
Query: 243 WDTKHVLTGSADNSCRLWDCETGKQLALLKTN-SAVRTC-GFDFGGNIIMFSTDKQMGYQ 416
D + + S D + +WD ETG+++ LK + S V +C G ++ +D
Sbjct: 120 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT--- 176
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
V +D+R + I + + N ++ + + + II+G ++ + + +
Sbjct: 177 --VKLWDIRKKAAIQTFQ-------NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
Query: 597 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD---------STTLEHQKTFRTER 749
+ ++ H+ + + LS + + ++ + DNT +++D + E+
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDV-TTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ + SP+ + G + V TTS RI ++ GH G I+
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI---------------LYKLPGHAGSIN 332
Query: 927 SVAFHPDGKSYSSGGED 977
VAFHPD S D
Sbjct: 333 EVAFHPDEPIILSASSD 349
>ref|NP_001230134.1| U3 small nucleolar RNA-associated protein 15 homolog [Sus scrofa].
Length = 518
Score = 71.2 bits (173), Expect = 1e-12
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 2/232 (0%)
Frame = +3
Query: 111 YNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCR 290
+ ++G LL ++D V ++ L + GHT AV VD D HV++G+ D + +
Sbjct: 88 FRQDGRLLIAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVK 147
Query: 291 LWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNE 470
LWD K++ K +S CG N +F T Y V FD R + S E
Sbjct: 148 LWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFVTG---SYDHTVKMFDARTNQSVISVE 204
Query: 471 PYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SAKSGEVLVNVKEHSRQINDIQ 644
+ + S + P G +++ GG + K G++LV++K H + + +
Sbjct: 205 -------HGQPVESVLLFPSGGLLVSA--GGRYVKVWDVLKGGQLLVSLKNHHKTVTCLC 255
Query: 645 LSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLG 800
LS ++ S D K++ +T+ + +F + S AL+ + +V+G
Sbjct: 256 LSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALAHEDETIVVG 307
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 70.5 bits (171), Expect = 2e-12
Identities = 60/295 (20%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+D++ + + +P + +++ + G I++ G + SG+ L
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 48.9 bits (115), Expect = 5e-06
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 198 TYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGN 377
T GHT AV V + + + + SAD ++W GK KT S G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS-----GHKLGIS 91
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPS--QIDSNEPYMKIPCNDSKITSAVWGPLGECIIAG 551
+ +S+D + VS D + + S + + + + + + P I++G
Sbjct: 92 DVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 552 HEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQK 731
+ + K+G+ L + HS ++ + +RD ++ V++S D +++D+ + + K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 732 TFRTE--RPVNSAALSPNYDHVV 794
T + PV+ SPN +++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYIL 230
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 70.1 bits (170), Expect = 2e-12
Identities = 66/313 (21%), Positives = 136/313 (43%), Gaps = 7/313 (2%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH +++ +K++ G+ L + + D ++ +W + +G+ GH+ + V D+
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHSLEISDVAWSSDSG 96
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD GK L LK +S V C F+ N+I+ SF
Sbjct: 97 RLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISG-----------SF 145
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+ ++ + + + +++ + G I++G G + A SG+ L
Sbjct: 146 DESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTL 205
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
V + + I+ ++ S + + A+ DNT KL+D + KT+ + E+ A S
Sbjct: 206 VDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVT 265
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 266 SGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISAACHPTENII 312
Query: 960 SSG--GEDGYVRI 992
+S G D V++
Sbjct: 313 ASAALGNDKTVKL 325
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 66.2 bits (160), Expect = 3e-11
Identities = 63/309 (20%), Positives = 126/309 (40%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH ++T + ++ L + + D + VW+ R + GH AV CV+
Sbjct: 16 KGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G + ++D + + +
Sbjct: 76 LASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT-----IKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 STHRQKFLFSLSQHI------NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T A DNT K++D T L+H + VN+ + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLH--SAAVNALSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
++V + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLVTASSDSTLKI------LDLMEGRLLY--------TLHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
>ref|XP_003135260.2| PREDICTED: bromodomain and WD repeat-containing protein 3 [Sus
scrofa].
Length = 1800
Score = 63.2 bits (152), Expect = 3e-10
Identities = 74/327 (22%), Positives = 135/327 (41%), Gaps = 19/327 (5%)
Frame = +3
Query: 81 GHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHV 260
GH S+ + ++R G +FT + D +V +W + +G L T GH+ + + +++ +
Sbjct: 178 GHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLI 237
Query: 261 LTGSADNSCRLWDCETGKQLALLKTNSA----VRTCGFDFGGNIIMFSTDKQMGYQCFVS 428
GS D R+W T +A+L+ +SA ++ C G + ST G CF
Sbjct: 238 AAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGAD-GTICFWQ 296
Query: 429 F------FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SA 584
+ F R + + P ++I C S +S G I G + Y +
Sbjct: 297 WHVKTMKFRDRPVKFTERSRPGVQISC--SSFSSG-----GMFITTGSTDHVIRIYYLGS 349
Query: 585 KSGEVLVNVKEHSRQINDIQL--SRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVN 758
+ E + ++ H+ ++ +Q + D FV+ S+D TA+++ E +
Sbjct: 350 EIPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKM 409
Query: 759 SAALSPNYDHVV--LGGGQEAMD--VTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ P+ + V L A D TT T + F + ++ + + GH +
Sbjct: 410 TGNNLPSGEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDEVF 469
Query: 927 SVAFHP-DGKSYSSGGEDGYVRIHYFD 1004
+ HP D + S G DG + I D
Sbjct: 470 VLEAHPFDQRIILSAGHDGNIFIWDLD 496
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 62.8 bits (151), Expect = 3e-10
Identities = 76/347 (21%), Positives = 144/347 (41%), Gaps = 42/347 (12%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYM-GHTGAVWCVDADWDTK 254
QGH + I ++ +G L + K+ + +W G+++G + GH+ W W+
Sbjct: 153 QGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSK--WITALSWEPL 210
Query: 255 H-------VLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQ--- 404
H V + S D S R+WD G+ +L ++ TC +GG+ +++S +
Sbjct: 211 HANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTC-LRWGGDGLLYSASQDRTI 269
Query: 405 --------------MGYQCFVSFFDLR----------DPSQIDSNEPYMKIPCNDSKITS 512
G+ +V+ L +P++ N ++ + K +
Sbjct: 270 KVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERA 329
Query: 513 A-----VWGPLGECIIAGHEGGELNQYS-AKSGEVLVNVKEHSRQINDIQLSRDMTMFVT 674
V G E +++G + L +S A+ + L + H IN + S D + +
Sbjct: 330 LSRYNLVRGRGLERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIIAS 389
Query: 675 ASKDNTAKLFDSTTLEHQKTFRTE-RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGK 851
AS D + KL+D T ++ + R V A S + +V G + V
Sbjct: 390 ASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKV--------- 440
Query: 852 FEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSSGGEDGYVRI 992
++ + LA + + GH +++V + PDG+ +SGG+D +RI
Sbjct: 441 WDVKAQKLAAD-----LPGHADEVYAVDWSPDGQRVASGGKDKCLRI 482
Score = 50.4 bits (119), Expect = 2e-06
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 8/226 (3%)
Frame = +3
Query: 54 AGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCV 233
AG +L GH +S+T +++ +G LL++ ++D + VW + +G T GH W
Sbjct: 235 AGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGH--GHWVN 291
Query: 234 DADWDTKHVL-TGS---ADNSCRLWDCETG----KQLALLKTNSAVRTCGFDFGGNIIMF 389
T + L TG+ A+ S D K+ AL + N VR G + ++
Sbjct: 292 TMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYN-LVRGRGLE---RLVSG 347
Query: 390 STDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGEL 569
S D F L S + +P ++ + + I ++ P I + +
Sbjct: 348 SDD-----------FTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSI 396
Query: 570 NQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD 707
+ ++G+ L +++ H + I S D + V+ S D+T K++D
Sbjct: 397 KLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD 442
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +3
Query: 63 KPIL-LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 239
KP+ + GH+ I Q+ ++ + ++ + + D + +W G+ L + GH AV+ +
Sbjct: 363 KPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAW 422
Query: 240 DWDTKHVLTGSADNSCRLWDCETGKQLA 323
D++ +++GS+D++ ++WD + K A
Sbjct: 423 SADSRLLVSGSSDSTLKVWDVKAQKLAA 450
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,790,938
Number of extensions: 867137
Number of successful extensions: 4135
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3952
Number of HSP's successfully gapped: 67
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003748.1| eukaryotic translation initiation factor 3 subu... 658 0.0
Alignment gi|NP_009109.3| serine-threonine kinase receptor-associated pro... 101 1e-21
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 87 2e-17
Alignment gi|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 77 3e-14
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 74 2e-13
Alignment gi|NP_115551.2| U3 small nucleolar RNA-associated protein 15 ho... 71 2e-12
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 70 3e-12
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 70 3e-12
Alignment gi|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 ... 67 4e-11
Alignment gi|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Ho... 67 4e-11
>ref|NP_003748.1| eukaryotic translation initiation factor 3 subunit I [Homo sapiens].
Length = 325
Score = 658 bits (1697), Expect = 0.0
Identities = 315/318 (99%), Positives = 317/318 (99%)
Frame = +3
Query: 60 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 239
MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
Sbjct: 1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60
Query: 240 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 419
DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
Sbjct: 61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120
Query: 420 FVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEV 599
FVSFFDLRDPSQID+NEPYMKIPCNDSKITSAVWGPLGECIIAGHE GELNQYSAKSGEV
Sbjct: 121 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEV 180
Query: 600 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 779
LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
Sbjct: 181 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 240
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSY 959
YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI+SVAFHPDGKSY
Sbjct: 241 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY 300
Query: 960 SSGGEDGYVRIHYFDPQY 1013
SSGGEDGYVRIHYFDPQY
Sbjct: 301 SSGGEDGYVRIHYFDPQY 318
>ref|NP_009109.3| serine-threonine kinase receptor-associated protein [Homo sapiens].
Length = 350
Score = 101 bits (251), Expect = 1e-21
Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 13/322 (4%)
Frame = +3
Query: 66 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 416
+ D T +AD + ++WD +G +L L V+T F N ++ G
Sbjct: 67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 121
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 122 KLLRIYDLNKPEA----EP-KEISGHTSGIKKALWCSEDKQILS-------------ADD 163
Query: 597 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 746
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAP 223
Query: 747 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+NSA+L P + +V GG F+ + EE KGHFGPIH
Sbjct: 224 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 269
Query: 927 SVAFHPDGKSYSSGGEDGYVRI 992
V F PDG+ Y+SG EDG +R+
Sbjct: 270 CVRFSPDGELYASGSEDGTLRL 291
Score = 62.8 bits (151), Expect = 6e-10
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 6/220 (2%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT--YMGHTG----AVWC 230
++ H+ + + + ++ + L T +D ++ + Y +N GHT A+WC
Sbjct: 94 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHTSGIKKALWC 152
Query: 231 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 153 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 207
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
+ VS DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 208 FHSAVSL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 254
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 710
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 255 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 87.4 bits (215), Expect = 2e-17
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 2/309 (0%)
Frame = +3
Query: 72 LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCV--DADW 245
+L+ H +T + N+ G T + D +W + +GE L T GH V+ + + +
Sbjct: 87 VLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPY 146
Query: 246 DTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFV 425
K + TGS D +C+LW ETGK + ++A I+ S + Q
Sbjct: 147 GDK-IATGSFDKTCKLWSVETGKCYHTFRGHTA----------EIVCLSFNPQSTLVATG 195
Query: 426 SFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLV 605
S I + E + + ++I S + G+ II G + + A +G +
Sbjct: 196 SMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVN 255
Query: 606 NVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYD 785
+ H +I+ + D ++ +T S D T KL+D+T + K T + L +D
Sbjct: 256 ILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDAT---NGKCVATLTGHDDEILDSCFD 312
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+ G+ + T AR F A + +++GH G I ++F+P G +
Sbjct: 313 YT----GKLIATASADGT------ARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLT 362
Query: 966 GGEDGYVRI 992
G D RI
Sbjct: 363 GSSDKTARI 371
Score = 85.9 bits (211), Expect = 6e-17
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 2/218 (0%)
Frame = +3
Query: 57 GMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 236
G + L+GH I + +N GD + T + D V VW + G ++ +GH +
Sbjct: 209 GEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSAS 268
Query: 237 ADWDTKHVLTGSADNSCRLWDCETGKQLALL--KTNSAVRTCGFDFGGNIIMFSTDKQMG 410
+WD +LTGS D +C+LWD GK +A L + + +C FD+ G +I +T G
Sbjct: 269 FNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSC-FDYTGKLI--ATASADG 325
Query: 411 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 590
S + ++++ +E +I+ + P G ++ G + A++
Sbjct: 326 TARIFSAATRKCIAKLEGHE---------GEISKISFNPQGNHLLTGSSDKTARIWDAQT 376
Query: 591 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLF 704
G+ L ++ H+ +I + + +T SKDNT +++
Sbjct: 377 GQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 79.7 bits (195), Expect = 4e-15
Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 3/323 (0%)
Frame = +3
Query: 33 CRLPSVFAGMKPILLQGHERSITQIKYNRE-GDLLFTVAKDPIVNVWYSVNGERLGTYMG 209
C+L +G + L+GH + I +N GD + T + D +W G+ T+ G
Sbjct: 116 CKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRG 175
Query: 210 HTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIM 386
HT + C+ + + V TGS D + +LWD + G+++ L+ +SA + + F+ G+ I+
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII 235
Query: 387 FSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGE 566
+ + V +D D+ + + ++I+SA + I+ G
Sbjct: 236 TGS-----FDHTVVVWD------ADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKT 284
Query: 567 LNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLE-HQKTFRT 743
+ A +G+ + + H +I D + TAS D TA++F + T + K
Sbjct: 285 CKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGH 344
Query: 744 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI 923
E ++ + +P +H++ G + AR + + ++GH I
Sbjct: 345 EGEISKISFNPQGNHLLTGSSDKT--------------ARIWDAQTGQCLQVLEGHTDEI 390
Query: 924 HSVAFHPDGKSYSSGGEDGYVRI 992
S AF+ G +G +D RI
Sbjct: 391 FSCAFNYKGNIVITGSKDNTCRI 413
Score = 75.1 bits (183), Expect = 1e-13
Identities = 52/233 (22%), Positives = 108/233 (46%), Gaps = 1/233 (0%)
Frame = +3
Query: 21 FYSRCRLPSVFAGMKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGT 200
F C+L SV G +GH I + +N + L+ T + D +W NGE + T
Sbjct: 155 FDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYT 214
Query: 201 YMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGN 377
GH+ + + + ++TGS D++ +WD +TG+++ +L + A + + F++ +
Sbjct: 215 LRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCS 274
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHE 557
+I+ + M C +D + + + + +D +I + + G+ I
Sbjct: 275 LILTGS---MDKTC--KLWDATNGKCVAT------LTGHDDEILDSCFDYTGKLIATASA 323
Query: 558 GGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT 716
G +SA + + + ++ H +I+ I + +T S D TA+++D+ T
Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQT 376
>ref|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens].
Length = 357
Score = 77.0 bits (188), Expect = 3e-14
Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 14/317 (4%)
Frame = +3
Query: 69 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGE--RLGTYMGHTGAVWCVDAD 242
+LL GHE + K++ G L + D ++ +W +V G+ T GH+GAV + +
Sbjct: 60 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLW-NVYGDCDNYATLKGHSGAVMELHYN 118
Query: 243 WDTKHVLTGSADNSCRLWDCETGKQLALLKTN-SAVRTC-GFDFGGNIIMFSTDKQMGYQ 416
D + + S D + +WD ETG+++ LK + S V +C G ++ +D
Sbjct: 119 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT--- 175
Query: 417 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 596
V +D+R + I + + N ++ + + + II+G ++ + + +
Sbjct: 176 --VKLWDIRKKAAIQTFQ-------NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 226
Query: 597 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFD---------STTLEHQKTFRTER 749
+ ++ H+ + + LS + + ++ + DNT +++D + E+
Sbjct: 227 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 286
Query: 750 PVNSAALSPNYDHVVLGGGQEAMDV-TTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIH 926
+ + SP+ + G + V TTS RI ++ GH G I+
Sbjct: 287 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI---------------LYKLPGHAGSIN 331
Query: 927 SVAFHPDGKSYSSGGED 977
VAFHPD S D
Sbjct: 332 EVAFHPDEPIIISASSD 348
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 73.9 bits (180), Expect = 2e-13
Identities = 64/295 (21%), Positives = 132/295 (44%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH +++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSS 96
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + +LWD +GK L LK +S V C F+ N+I+ SF
Sbjct: 97 RLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISG-----------SF 145
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+ ++ + + + + +++ + G I++G G + A SG+ L
Sbjct: 146 DETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTL 205
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
V + + ++ ++ S + +TA+ DNT KL+D + KT+ + E+ A S
Sbjct: 206 VDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVT 265
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 266 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISAACHP 307
Score = 59.3 bits (142), Expect = 6e-09
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 27/249 (10%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH I+ + ++ + L + + D + +W +G+ L T GH+ V+C + + +
Sbjct: 79 LYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSN 138
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFST--------DKQM 407
+++GS D + ++W+ +TGK L L +S V F+ G++I+ + D
Sbjct: 139 LIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAAS 198
Query: 408 GYQCFVSFFDLRDPS----QIDSNEPYMKIPCNDSKITSAVWG-PLGECI--IAGHEGGE 566
G QC + D +P + N Y+ D+ T +W G C+ GH+ +
Sbjct: 199 G-QCLKTLVDDDNPPVSFVKFSPNGKYILTATLDN--TLKLWDYSRGRCLKTYTGHKNEK 255
Query: 567 ---LNQYSAKSGEVLVNVKEH------SRQINDI--QLSRDMTMFVTASKDNTAKLFDST 713
+S G+ +V+ E + Q +I +L + ++A+ T L S
Sbjct: 256 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASA 315
Query: 714 TLEHQKTFR 740
LE+ KT +
Sbjct: 316 ALENDKTIK 324
>ref|NP_115551.2| U3 small nucleolar RNA-associated protein 15 homolog [Homo
sapiens].
Length = 518
Score = 71.2 bits (173), Expect = 2e-12
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 2/232 (0%)
Frame = +3
Query: 111 YNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCR 290
+ ++G LL ++D V ++ L + GHT AV VD D HV++G+ D + +
Sbjct: 88 FRQDGRLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVK 147
Query: 291 LWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNE 470
LWD K++ K +S CG N +F T Y V FD R + S E
Sbjct: 148 LWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFITG---SYDHTVKMFDARTSESVLSVE 204
Query: 471 PYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQY--SAKSGEVLVNVKEHSRQINDIQ 644
+ + S + P G +++ GG + K G++LV++K H + + +
Sbjct: 205 -------HGQPVESVLLFPSGGLLVSA--GGRYVKVWDMLKGGQLLVSLKNHHKTVTCLC 255
Query: 645 LSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLG 800
LS ++ S D K++ +T+ + +F + S AL+ + +V+G
Sbjct: 256 LSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALAHEDETIVVG 307
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 70.5 bits (171), Expect = 3e-12
Identities = 60/295 (20%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+D++ + + +P + +++ + G I++ G + SG+ L
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 48.9 bits (115), Expect = 8e-06
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 198 TYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGN 377
T GHT AV V + + + + SAD ++W GK KT S G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS-----GHKLGIS 91
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPS--QIDSNEPYMKIPCNDSKITSAVWGPLGECIIAG 551
+ +S+D + VS D + + S + + + + + + P I++G
Sbjct: 92 DVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 552 HEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQK 731
+ + K+G+ L + HS ++ + +RD ++ V++S D +++D+ + + K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 732 TFRTE--RPVNSAALSPNYDHVV 794
T + PV+ SPN +++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYIL 230
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 70.5 bits (171), Expect = 3e-12
Identities = 60/295 (20%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +3
Query: 75 LQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTK 254
L GH ++++ +K++ G+ L + + D ++ +W + +G+ T GH + V D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 255 HVLTGSADNSCRLWDCETGKQLALLKTNS-AVRTCGFDFGGNIIMFSTDKQMGYQCFVSF 431
+++ S D + ++WD +GK L LK +S V C F+ N+I+ + + V
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRI 155
Query: 432 FDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVN- 608
+D++ + + +P + +++ + G I++ G + SG+ L
Sbjct: 156 WDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 609 VKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF---RTERPVNSAALSPN 779
+ + + ++ ++ S + + A+ DNT KL+D + + KT+ + E+ A S
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 780 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHP 944
++ G ++ + ++L +E +++GH + S A HP
Sbjct: 270 GGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 48.9 bits (115), Expect = 8e-06
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 198 TYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGN 377
T GHT AV V + + + + SAD ++W GK KT S G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS-----GHKLGIS 91
Query: 378 IIMFSTDKQMGYQCFVSFFDLRDPS--QIDSNEPYMKIPCNDSKITSAVWGPLGECIIAG 551
+ +S+D + VS D + + S + + + + + + P I++G
Sbjct: 92 DVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 552 HEGGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQK 731
+ + K+G+ L + HS ++ + +RD ++ V++S D +++D+ + + K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 732 TFRTE--RPVNSAALSPNYDHVV 794
T + PV+ SPN +++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYIL 230
>ref|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 [Homo sapiens].
Length = 359
Score = 66.6 bits (161), Expect = 4e-11
Identities = 63/309 (20%), Positives = 125/309 (40%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH ++T + ++ L + + D + VW+ R + GH AV CV+
Sbjct: 16 KGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G + ++D + V +
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT-----VKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 ATHRQKFLFSLSQHI------NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T A DNT K++D T L+H + VN + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAA--VNGLSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+++ + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLITASSDSTLKI------LDLMEGRLLYT--------LHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
>ref|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Homo sapiens].
Length = 407
Score = 66.6 bits (161), Expect = 4e-11
Identities = 63/309 (20%), Positives = 125/309 (40%), Gaps = 4/309 (1%)
Frame = +3
Query: 78 QGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKH 257
+GH ++T + ++ L + + D + VW+ R + GH AV CV+
Sbjct: 16 KGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75
Query: 258 VLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 434
+ +GS D + R+W + + + ++A VR+ F G + ++D + V +
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT-----VKVW 130
Query: 435 DLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVLVNVK 614
+ S ++ + + A + P G I++ + + + S E + +
Sbjct: 131 ATHRQKFLFSLSQHI------NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYC 184
Query: 615 EHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTT---LEHQKTFRTERPVNSAALSPNYD 785
EH + + T A DNT K++D T L+H + VN + P+ +
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAA--VNGLSFHPSGN 242
Query: 786 HVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIHSVAFHPDGKSYSS 965
+++ + + + E R + + GH GP +VAF G+ ++S
Sbjct: 243 YLITASSDSTLKI------LDLMEGRLLYT--------LHGHQGPATTVAFSRTGEYFAS 288
Query: 966 GGEDGYVRI 992
GG D V +
Sbjct: 289 GGSDEQVMV 297
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,390,094
Number of extensions: 1374378
Number of successful extensions: 6770
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 6391
Number of HSP's successfully gapped: 107
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007622
(1121 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 307 7e-81
>Sscrofa_Chr06
|| Length = 157765593
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 954 agctacagcagcggtggggaagacggttatgtccgcatccactacttcgacccgcagtac 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82737326 agctacagcagcggtggggaagacggttatgtccgcatccactacttcgacccgcagtac 82737385
Query: 1014 tttgaatttgagtttgaggcttaagaagctggatctccgtctggggtagggtcacagaag 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82737386 tttgaatttgagtttgaggcttaagaagctggatctccgtctggggtagggtcacagaag 82737445
Query: 1074 gttttggactctgagaaataaattagtttggaaat 1108
|||||||||||||||||||||||||||||||||||
Sbjct: 82737446 gttttggactctgagaaataaattagtttggaaat 82737480
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 306 acagggaaacagttggccctcctcaagaccaactcagcagtccggacctgtggctttgac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82731404 acagggaaacagttggccctcctcaagaccaactcagcagtccggacctgtggctttgac 82731463
Query: 366 tttgggggcaacatcatcatgttctccacggacaagcagatgggctaccagtgcttcgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82731464 tttgggggcaacatcatcatgttctccacggacaagcagatgggctaccagtgcttcgtg 82731523
Query: 426 agcttctttgatctccgggacccgagccagattg 459
||||||||||||||||||||||||||||||||||
Sbjct: 82731524 agcttctttgatctccgggacccgagccagattg 82731557
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 459 gacagcaacgagccttacatgaagatcccctgcaatgactccaagatcaccagtgctgtt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82731644 gacagcaacgagccttacatgaagatcccctgcaatgactccaagatcaccagtgctgtt 82731703
Query: 519 tggggacccttgggagagtgcatcattgcgggccatgagggtggagagctcaaccagtat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82731704 tggggacccttgggagagtgcatcattgcgggccatgagggtggagagctcaaccagtat 82731763
Query: 579 agcgccaag 587
|||||||||
Sbjct: 82731764 agcgccaag 82731772
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 586 agtctggagaggtgttggtgaatgttaaggagcactcgcggcagatcaatgacatccagt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82735104 agtctggagaggtgttggtgaatgttaaggagcactcgcggcagatcaatgacatccagt 82735163
Query: 646 tatcccgggacatgaccatgtttgtcactgcatccaaggacaacacagccaag 698
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82735164 tatcccgggacatgaccatgtttgtcactgcatccaaggacaacacagccaag 82735216
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 62 gaagccgatcctgctgcagggccatgagcggtccattacgcagattaagtacaaccgcga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82728436 gaagccgatcctgctgcagggccatgagcggtccattacgcagattaagtacaaccgcga 82728495
Query: 122 gggagacctcctcttcacggtggccaaggaccct 155
||||||||||||||||||||||||||||||||||
Sbjct: 82728496 gggagacctcctcttcacggtggccaaggaccct 82728529
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 697 agctctttgactccacaaccctggaacaccagaagactttccgcacagaacgtcccgtca 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82735329 agctctttgactccacaaccctggaacaccagaagactttccgcacagaacgtcccgtca 82735388
Query: 757 actcggctgccctctctcccaactatgaccacgt 790
||||||||||||||||||||||||||||||||||
Sbjct: 82735389 actcggctgccctctctcccaactatgaccacgt 82735422
Score = 184 bits (93), Expect = 7e-44
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 859 ccaggttcttccacttggcctttgaagaagaattcggaagagtcaagggtcacttcggac 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82737092 ccaggttcttccacttggcctttgaagaagaattcggaagagtcaagggtcacttcggac 82737151
Query: 919 ctatccacagcgttgccttccatcctgatggcaaaag 955
||||| |||||||||||||||||||||||||||||||
Sbjct: 82737152 ctatcaacagcgttgccttccatcctgatggcaaaag 82737188
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 156 attgtcaatgtatggtactctgtgaatggtgagaggctgggcacctacatgggccacacc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82729805 attgtcaatgtatggtactctgtgaatggtgagaggctgggcacctacatgggccacacc 82729864
Query: 216 ggtgctgtgtggtgtgtggacgctgactg 244
|||||||||||||||||||||||||||||
Sbjct: 82729865 ggtgctgtgtggtgtgtggacgctgactg 82729893
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 789 gtggtgctgggcggtggtcaggaagccatggatgtaaccactacctccaccaggattggc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82735749 gtggtgctgggcggtggtcaggaagccatggatgtaaccactacctccaccaggattggc 82735808
Query: 849 aagttcgaggccaggt 864
||||||||||||||||
Sbjct: 82735809 aagttcgaggccaggt 82735824
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 244 gggacaccaagcatgtcctcaccggctcagctgacaacagctgtcgtctctgggactgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82730184 gggacaccaagcatgtcctcaccggctcagctgacaacagctgtcgtctctgggactgtg 82730243
Query: 304 aaacagg 310
|||||||
Sbjct: 82730244 aaacagg 82730250
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 4 gtcaaaccctcttccgcttctactcacgttgccgccttcccagcgttttcgccggtatg 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82728285 gtcaaaccctcttccgcttctactcacgttgccgccttcccagcgttttcgccggtatg 82728343
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,305,566
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 11
Length of query: 1121
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1100
Effective length of database: 2,808,413,156
Effective search space: 3089254471600
Effective search space used: 3089254471600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)