Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776664.1| retinal dehydrogenase 1 [Bos taurus]. 572 e-163
Alignment gi|XP_002690901.1| PREDICTED: aldehyde dehydrogenase 1 family, ... 456 e-128
Alignment gi|XP_615062.5| PREDICTED: aldehyde dehydrogenase 1A2, partial ... 438 e-123
Alignment gi|NP_001068835.1| aldehyde dehydrogenase, mitochondrial precur... 412 e-115
Alignment gi|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 s... 412 e-115
Alignment gi|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subf... 412 e-115
Alignment gi|XP_002690902.1| PREDICTED: aldehyde dehydrogenase 1 family, ... 369 e-102
Alignment gi|XP_002689768.1| PREDICTED: aldehyde dehydrogenase 1 family, ... 358 3e-99
Alignment gi|XP_599364.5| PREDICTED: aldehyde dehydrogenase 1 family, mem... 358 3e-99
Alignment gi|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [... 265 6e-71
>ref|NP_776664.1| retinal dehydrogenase 1 [Bos taurus].
Length = 501
Score = 572 bits (1474), Expect = e-163
Identities = 275/314 (87%), Positives = 291/314 (92%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSSSAMPD+P PLTNL+F+YTKIFINNEWH+SVSGKKFPVFNPATEEKLCE
Sbjct: 1 MSSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDV 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTMDASERG+L+NKLADLIERD LLLATME+MNGGKLFSNAYL
Sbjct: 61 DKAVKAVRQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYL 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
MDLGGCI+TLRYCAGWADKI GRTIPMDGNFFTYTRSEP+GVCGQIIPWNFPL+M +WKI
Sbjct: 121 MDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKI 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPALSCGNTVVVKPAEQTPLTALH+ SLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD
Sbjct: 181 GPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VGK+IKEAAGKSNLKRV+LELGGKSPCIVFADADLD AVEFAH G+FYHQG
Sbjct: 241 KVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQG 300
Query: 956 QCCIAASRLFVEES 997
QCCIAASRLFVEES
Sbjct: 301 QCCIAASRLFVEES 314
>ref|XP_002690901.1| PREDICTED: aldehyde dehydrogenase 1 family, member A2 isoform 1
[Bos taurus].
Length = 518
Score = 456 bits (1173), Expect = e-128
Identities = 216/318 (67%), Positives = 262/318 (82%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
+ +DK+AFTGST+VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 254 VGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 313
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 314 FNQGQCCTAGSRIFVEES 331
>ref|XP_615062.5| PREDICTED: aldehyde dehydrogenase 1A2, partial [Bos taurus].
Length = 479
Score = 438 bits (1126), Expect = e-123
Identities = 207/292 (70%), Positives = 246/292 (84%)
Frame = +2
Query: 122 IFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDA 301
IFINNEW NS SG+ FPV+NPAT E++CE R AF +GS WR MDA
Sbjct: 1 IFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDA 60
Query: 302 SERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHG 481
SERG+L++KLADL+ERDR +LATMES+NGGK F A+ +DL G I+TLRY AGWADKIHG
Sbjct: 61 SERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTLRYYAGWADKIHG 120
Query: 482 RTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTA 661
TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M WKI PAL CGNTVV+KPAEQTPL+A
Sbjct: 121 MTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSA 180
Query: 662 LHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSN 841
L++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH+ +DK+AFTGST+VGK+I+EAAG+SN
Sbjct: 181 LYMGALIKEAGFPPGVINILPGYGPTAGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSN 240
Query: 842 LKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
LKRVTLELGGKSP I+FADADLD AVE AH G+F++QGQCC A SR+FVEES
Sbjct: 241 LKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEES 292
>ref|NP_001068835.1| aldehyde dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 520
Score = 412 bits (1060), Expect = e-115
Identities = 197/311 (63%), Positives = 244/311 (78%)
Frame = +2
Query: 62 SSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXX 241
S+A +P P + Y +IFINNEWH++VS K FP NP+T + +C
Sbjct: 22 SAATQAVPTPNQQPEVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDR 81
Query: 242 XXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMD 421
R AFQ+GSPWR MDASERG+L+N+LADLIERDR LA +E+++ GK + +YL+D
Sbjct: 82 AVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVD 141
Query: 422 LGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGP 601
L ++ LRY AGWADK HG+TIP+DG++F+YTR EP+GVCGQIIPWNFPL+M WK+GP
Sbjct: 142 LDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGP 201
Query: 602 ALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKV 781
AL+ GN VV+K AEQTPLTAL+VA+LIKEAGFPPGVVN++PG+GPTAGAAI+SH DVDKV
Sbjct: 202 ALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKV 261
Query: 782 AFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQC 961
AFTGST+VG +I+ AAGKSNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QGQC
Sbjct: 262 AFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQC 321
Query: 962 CIAASRLFVEE 994
C A SR FV+E
Sbjct: 322 CCAGSRTFVQE 332
>ref|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 412 bits (1060), Expect = e-115
Identities = 196/291 (67%), Positives = 233/291 (80%)
Frame = +2
Query: 122 IFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDA 301
IFINNEW+ S SGKKF +NP+T EK+CE + AFQ GSPWR +DA
Sbjct: 59 IFINNEWNESKSGKKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDA 118
Query: 302 SERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHG 481
RG+L+ +LADL+ERDR +LAT+E+M+ GK F +A+ +DL GCI+TLRY AGWADKI G
Sbjct: 119 PSRGRLLQQLADLVERDRAVLATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQG 178
Query: 482 RTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTA 661
RTIP D N +TR EPIGVCG I PWNFPL+ML+WK+ PAL CGNTVV+KPAEQTPLTA
Sbjct: 179 RTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPAEQTPLTA 238
Query: 662 LHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSN 841
L++ SLIKE GFPPGVVNIVPG+GPT GAAISSH ++K+AFTGST+VGK++KEAA SN
Sbjct: 239 LYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGKLVKEAASHSN 298
Query: 842 LKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEE 994
LKRVTLELGGK+PCIV ADAD D AVE AH G+F++QGQCC AASR+FVEE
Sbjct: 299 LKRVTLELGGKNPCIVCADADCDLAVECAHQGVFFNQGQCCTAASRVFVEE 349
>ref|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 412 bits (1060), Expect = e-115
Identities = 196/291 (67%), Positives = 233/291 (80%)
Frame = +2
Query: 122 IFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDA 301
IFINNEW+ S SGKKF +NP+T EK+CE + AFQ GSPWR +DA
Sbjct: 59 IFINNEWNESKSGKKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDA 118
Query: 302 SERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHG 481
RG+L+ +LADL+ERDR +LAT+E+M+ GK F +A+ +DL GCI+TLRY AGWADKI G
Sbjct: 119 PSRGRLLQQLADLVERDRAVLATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQG 178
Query: 482 RTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTA 661
RTIP D N +TR EPIGVCG I PWNFPL+ML+WK+ PAL CGNTVV+KPAEQTPLTA
Sbjct: 179 RTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPAEQTPLTA 238
Query: 662 LHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSN 841
L++ SLIKE GFPPGVVNIVPG+GPT GAAISSH ++K+AFTGST+VGK++KEAA SN
Sbjct: 239 LYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGKLVKEAASHSN 298
Query: 842 LKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEE 994
LKRVTLELGGK+PCIV ADAD D AVE AH G+F++QGQCC AASR+FVEE
Sbjct: 299 LKRVTLELGGKNPCIVCADADCDLAVECAHQGVFFNQGQCCTAASRVFVEE 349
>ref|XP_002690902.1| PREDICTED: aldehyde dehydrogenase 1 family, member A2 isoform 2
[Bos taurus].
Length = 480
Score = 369 bits (948), Expect = e-102
Identities = 186/318 (58%), Positives = 225/318 (70%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKE
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKE------------------------- 228
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 229 -------------VGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 275
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 276 FNQGQCCTAGSRIFVEES 293
>ref|XP_002689768.1| PREDICTED: aldehyde dehydrogenase 1 family, member B1 [Bos taurus].
Length = 517
Score = 358 bits (920), Expect = 3e-99
Identities = 177/306 (57%), Positives = 221/306 (72%)
Frame = +2
Query: 80 IPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXR 259
+P P+ N ++FI+N+WH++VS K FP +PAT E + R
Sbjct: 25 LPSPIPNPDIPDNQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAAR 84
Query: 260 QAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIR 439
AF++GSPWR MDA +RG L+N LADL+ERD + LA++ES++ GK F +Y++DL I+
Sbjct: 85 AAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIK 144
Query: 440 TLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGN 619
RY AGWADK HG+TIPMDG F +TR EP+GVC QIIPWNFPLVM WK+ AL+ GN
Sbjct: 145 VYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCCQIIPWNFPLVMQSWKLALALAMGN 204
Query: 620 TVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGST 799
TVV K AEQTP +AL++ASLIKE G PPG+VNIV GYGPTAGAAI+ HMD+ KVAFTGST
Sbjct: 205 TVVTKVAEQTPFSALYLASLIKEVGLPPGLVNIVTGYGPTAGAAIAHHMDIGKVAFTGST 264
Query: 800 QVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASR 979
+VG +I++AAG S+LKRVTLELGGKS IV ADAD+D AVE LF++ GQCC S
Sbjct: 265 KVGHLIQKAAGNSSLKRVTLELGGKSLSIVLADADMDHAVEQRQEALFFNMGQCCCPGSW 324
Query: 980 LFVEES 997
F+EES
Sbjct: 325 TFIEES 330
>ref|XP_599364.5| PREDICTED: aldehyde dehydrogenase 1 family, member B1 [Bos taurus].
Length = 517
Score = 358 bits (920), Expect = 3e-99
Identities = 177/306 (57%), Positives = 221/306 (72%)
Frame = +2
Query: 80 IPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXR 259
+P P+ N ++FI+N+WH++VS K FP +PAT E + R
Sbjct: 25 LPSPIPNPDIPDNQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAAR 84
Query: 260 QAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIR 439
AF++GSPWR MDA +RG L+N LADL+ERD + LA++ES++ GK F +Y++DL I+
Sbjct: 85 AAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIK 144
Query: 440 TLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGN 619
RY AGWADK HG+TIPMDG F +TR EP+GVC QIIPWNFPLVM WK+ AL+ GN
Sbjct: 145 VYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCCQIIPWNFPLVMQSWKLALALAMGN 204
Query: 620 TVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGST 799
TVV K AEQTP +AL++ASLIKE G PPG+VNIV GYGPTAGAAI+ HMD+ KVAFTGST
Sbjct: 205 TVVTKVAEQTPFSALYLASLIKEVGLPPGLVNIVTGYGPTAGAAIAHHMDIGKVAFTGST 264
Query: 800 QVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASR 979
+VG +I++AAG S+LKRVTLELGGKS IV ADAD+D AVE LF++ GQCC S
Sbjct: 265 KVGHLIQKAAGNSSLKRVTLELGGKSLSIVLADADMDHAVEQRQEALFFNMGQCCCPGSW 324
Query: 980 LFVEES 997
F+EES
Sbjct: 325 TFIEES 330
>ref|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [Bos taurus].
Length = 923
Score = 265 bits (676), Expect = 6e-71
Identities = 132/295 (44%), Positives = 189/295 (64%), Gaps = 4/295 (1%)
Frame = +2
Query: 125 FINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDAS 304
FIN ++ ++ G+ + NP +C+ + AF+ G W M+A
Sbjct: 446 FINGQFTDAEDGQTYDTINPTDGSTICKVSYASLVDVDKAVAAAKDAFENGE-WGRMNAR 504
Query: 305 ERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGR 484
+RG+L+ +LADL+E + LAT+E+++ G +++ A +G ++T RY AGW DKI G
Sbjct: 505 DRGRLMYRLADLMEEKQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGS 564
Query: 485 TIPMD----GNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTP 652
TIP++ T+T+ EP+GVC IIPWN+PL+ML WK L+ GNT+V+KPA+ TP
Sbjct: 565 TIPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTP 624
Query: 653 LTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAG 832
LTAL A L +AGFP GV+NI+PG G G +S H D+ K+ FTGST +GK I ++
Sbjct: 625 LTALKFAELSVKAGFPKGVINIIPGSGGVVGQHLSEHPDIRKLGFTGSTLIGKQIMKSCA 684
Query: 833 KSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
SNLK+V+LELGGKSP I+F+D +LD AV +F+++G+ CIAA RLFVEES
Sbjct: 685 MSNLKKVSLELGGKSPLIIFSDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEES 739
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,304,338
Number of extensions: 976645
Number of successful extensions: 2415
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2368
Number of HSP's successfully gapped: 28
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (... 555 e-158
Alignment gi|XP_858692.1| PREDICTED: similar to Retinal dehydrogenase 1 (... 461 e-130
Alignment gi|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A... 456 e-128
Alignment gi|XP_863947.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 447 e-126
Alignment gi|XP_863966.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 447 e-126
Alignment gi|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinas... 431 e-121
Alignment gi|XP_863924.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 430 e-121
Alignment gi|XP_853628.1| PREDICTED: similar to Aldehyde dehydrogenase, m... 411 e-115
Alignment gi|XP_538742.2| PREDICTED: similar to aldehyde dehydrogenase 1B... 400 e-112
Alignment gi|XP_863880.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 369 e-102
>ref|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (RalDH1) (RALDH 1)
(Aldehyde dehydrogenase family 1 member A1) (Aldehyde
dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) isoform 1
[Canis familiaris].
Length = 501
Score = 555 bits (1429), Expect = e-158
Identities = 269/314 (85%), Positives = 285/314 (90%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSSSAMPD+PVPLTNL ++YTKIFINNEWHNSVSGKKFPVFNPATEEK+CE
Sbjct: 1 MSSSAMPDLPVPLTNLTYKYTKIFINNEWHNSVSGKKFPVFNPATEEKICEVEEGDKEDI 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTM+ASERG+LI KLADLIERDRLLLATMES+NGGKLFSN+Y
Sbjct: 61 DKAVKAARQAFQIGSPWRTMNASERGRLIYKLADLIERDRLLLATMESINGGKLFSNSYT 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DLGGC+ TLRYCAGWADKIHGRTIP+DGNFF YTR EPIGVCGQIIPWNFPL M IWKI
Sbjct: 121 LDLGGCVATLRYCAGWADKIHGRTIPVDGNFFGYTRHEPIGVCGQIIPWNFPLFMFIWKI 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL CGNTVVVKPAEQTPLTALHVASLI+EAGFPPGVVNIVPGYGPTAGAAISSHMD+D
Sbjct: 181 GPALCCGNTVVVKPAEQTPLTALHVASLIQEAGFPPGVVNIVPGYGPTAGAAISSHMDID 240
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VGKMIKEAAGKSNLKRVTLELGGKSP IVFAD+DLD+AVE AH LFYHQG
Sbjct: 241 KVAFTGSTEVGKMIKEAAGKSNLKRVTLELGGKSPFIVFADSDLDSAVEVAHQALFYHQG 300
Query: 956 QCCIAASRLFVEES 997
QCCIAASRLFVEES
Sbjct: 301 QCCIAASRLFVEES 314
>ref|XP_858692.1| PREDICTED: similar to Retinal dehydrogenase 1 (RalDH1) (RALDH 1)
(Aldehyde dehydrogenase family 1 member A1) (Aldehyde
dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) isoform 4
[Canis familiaris].
Length = 415
Score = 461 bits (1185), Expect = e-130
Identities = 233/314 (74%), Positives = 247/314 (78%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSSSAMPD+PVPLTNL ++YTKIFINNEWHNSVSGKKFPVFNPATEEK+CE
Sbjct: 1 MSSSAMPDLPVPLTNLTYKYTKIFINNEWHNSVSGKKFPVFNPATEEKICEVEEGDKEDI 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTM+ASERG+LI KLADLIERDRLLLATMES+NGGKLFSN+Y
Sbjct: 61 DKAVKAARQAFQIGSPWRTMNASERGRLIYKLADLIERDRLLLATMESINGGKLFSNSYT 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DLGGC+ TLRYCAGWADKIHGRTIP+DGNFF YTR EPIGVCGQIIPWNFPL M IWKI
Sbjct: 121 LDLGGCVATLRYCAGWADKIHGRTIPVDGNFFGYTRHEPIGVCGQIIPWNFPLFMFIWKI 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL CGNTVVVKPAEQTPLTALHVASLI+E
Sbjct: 181 GPALCCGNTVVVKPAEQTPLTALHVASLIQE----------------------------- 211
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
VGKMIKEAAGKSNLKRVTLELGGKSP IVFAD+DLD+AVE AH LFYHQG
Sbjct: 212 ---------VGKMIKEAAGKSNLKRVTLELGGKSPFIVFADSDLDSAVEVAHQALFYHQG 262
Query: 956 QCCIAASRLFVEES 997
QCCIAASRLFVEES
Sbjct: 263 QCCIAASRLFVEES 276
>ref|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform
1 [Canis familiaris].
Length = 518
Score = 456 bits (1173), Expect = e-128
Identities = 216/318 (67%), Positives = 262/318 (82%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
+ +DK+AFTGST+VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 254 IGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 313
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 314 FNQGQCCTAGSRIFVEES 331
>ref|XP_863947.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform
5 [Canis familiaris].
Length = 496
Score = 447 bits (1151), Expect = e-126
Identities = 214/319 (67%), Positives = 260/319 (81%), Gaps = 1/319 (0%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVG-KMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGL 940
+ +DK+AFTGST+ G +I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+
Sbjct: 254 IGIDKIAFTGSTETGLHLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGV 313
Query: 941 FYHQGQCCIAASRLFVEES 997
F++QGQCC A SR+FVEES
Sbjct: 314 FFNQGQCCTAGSRIFVEES 332
>ref|XP_863966.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform
6 [Canis familiaris].
Length = 496
Score = 447 bits (1150), Expect = e-126
Identities = 214/319 (67%), Positives = 261/319 (81%), Gaps = 1/319 (0%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVGK-MIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGL 940
+ +DK+AFTGST+V + +I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+
Sbjct: 254 IGIDKIAFTGSTEVERELIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGV 313
Query: 941 FYHQGQCCIAASRLFVEES 997
F++QGQCC A SR+FVEES
Sbjct: 314 FFNQGQCCTAGSRIFVEES 332
>ref|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinase 1 [Canis
familiaris].
Length = 2787
Score = 431 bits (1109), Expect = e-121
Identities = 204/307 (66%), Positives = 245/307 (79%)
Frame = +2
Query: 74 PDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXX 253
P +P P+ +L+ ++TKIFINNEWH S SGKKF +NP+T EK+CE
Sbjct: 258 PALPRPVRSLEVEFTKIFINNEWHESKSGKKFATYNPSTLEKICEVEEGDKLDVDKAVEA 317
Query: 254 XRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGC 433
AFQ GSPWR +DA RG L+++LADL+ERDR +LAT+E+M+ GK F +A+ +DL GC
Sbjct: 318 AHAAFQRGSPWRRLDALGRGWLLHQLADLVERDRAILATLETMDTGKPFLHAFFIDLEGC 377
Query: 434 IRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSC 613
I+TLRY AGWADKI GRTIP D N +TR EPIGVCG I PWNFPL+ML+WK+ PAL C
Sbjct: 378 IKTLRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCC 437
Query: 614 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 793
GNT+VVKPAEQTPLTAL++ SLIKE GFPPGVVNIVPG+GPT GAAISSH + K+AFTG
Sbjct: 438 GNTIVVKPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHISKIAFTG 497
Query: 794 STQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAA 973
ST+VGK++KEAA +SNLKRVTLELGGK+PCIV ADADLD AVE AH G+F++QGQCC AA
Sbjct: 498 STEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAA 557
Query: 974 SRLFVEE 994
SR+FVEE
Sbjct: 558 SRVFVEE 564
>ref|XP_863924.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform
4 [Canis familiaris].
Length = 494
Score = 430 bits (1106), Expect = e-121
Identities = 208/319 (65%), Positives = 255/319 (79%), Gaps = 1/319 (0%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQV-GKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGL 940
+ +DK+AFTGS+ + G M+ + +NLKRVTLELGGKSP I+FADADLD AVE AH G+
Sbjct: 254 IGIDKIAFTGSSPMSGSMLDMES--ANLKRVTLELGGKSPNIIFADADLDYAVEQAHQGV 311
Query: 941 FYHQGQCCIAASRLFVEES 997
F++QGQCC A SR+FVEES
Sbjct: 312 FFNQGQCCTAGSRIFVEES 330
>ref|XP_853628.1| PREDICTED: similar to Aldehyde dehydrogenase, mitochondrial
precursor (ALDH class 2) (ALDH1) (ALDH-E2) [Canis
familiaris].
Length = 521
Score = 411 bits (1057), Expect = e-115
Identities = 195/313 (62%), Positives = 246/313 (78%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S+++ +P P + Y +IFINNEWH++VS K FP NP+T E +C+
Sbjct: 21 LSAASSQAVPAPNQQPEVFYNQIFINNEWHDAVSKKTFPTINPSTGEVICQVAEGDKEDV 80
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
R AFQ+GSPWR MDAS+RG+L+N+LADLIERDR LA +E+++ GK + +YL
Sbjct: 81 DKAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYL 140
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL +R LRY AGWADK HG+TIP+DG+FF+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 141 VDLDMVLRCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 200
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN +V+K AEQTPLTAL+VA+LIKEAGFPPGVVNI+PG+GPTAGAAI+SH DVD
Sbjct: 201 GPALATGNVIVMKVAEQTPLTALYVANLIKEAGFPPGVVNIIPGFGPTAGAAIASHEDVD 260
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VG +++ AAG SNLKRVTLELGGKSP I+ +DAD++ AVE AH LF++QG
Sbjct: 261 KVAFTGSTEVGHLVQVAAGNSNLKRVTLELGGKSPNIIMSDADMNWAVEQAHFALFFNQG 320
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 321 QCCCAGSRTFVQE 333
>ref|XP_538742.2| PREDICTED: similar to aldehyde dehydrogenase 1B1 precursor [Canis
familiaris].
Length = 520
Score = 400 bits (1029), Expect = e-112
Identities = 194/327 (59%), Positives = 243/327 (74%)
Frame = +2
Query: 17 AEPVTCITGAEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEE 196
A + C+ G SS+A +P P+ N +Y ++FINNEW ++ S K FP NP T E
Sbjct: 9 APRLLCLRGRTAPYSSAAA--LPSPILNPDIRYNQLFINNEWQDAASKKTFPTVNPTTGE 66
Query: 197 KLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATME 376
+ R+AF++GSPWR MDASERG+L+N+LADL+ERDR+ LA++E
Sbjct: 67 VIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLE 126
Query: 377 SMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQII 556
+++ GK F +Y +DL I+ RY AGWADK HG+TIPMDG F +TR EP+GVCGQII
Sbjct: 127 TLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQII 186
Query: 557 PWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGP 736
PWNFPLVM WK+ PAL+ GNTVV+K AEQTPL+AL++ASLIKEAGFPPGVVN+V GYGP
Sbjct: 187 PWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNVVTGYGP 246
Query: 737 TAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAA 916
TAGAAI+ HMD+DKVAFTGST+VG +I++AAG SNLKRVTLELGGKSP +V ADAD++ A
Sbjct: 247 TAGAAIARHMDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSVVLADADMEHA 306
Query: 917 VEFAHHGLFYHQGQCCIAASRLFVEES 997
V H LF++ GQCC A SR FV+ES
Sbjct: 307 VAQCHEALFFNMGQCCCAGSRTFVQES 333
>ref|XP_863880.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 2 isoform
2 [Canis familiaris].
Length = 480
Score = 369 bits (948), Expect = e-102
Identities = 186/318 (58%), Positives = 225/318 (70%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKE
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKE------------------------- 228
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 229 -------------VGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 275
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 276 FNQGQCCTAGSRIFVEES 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,803,180
Number of extensions: 999470
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2496
Number of HSP's successfully gapped: 37
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038495.2| retinal dehydrogenase 1 [Mus musculus]. 546 e-156
Alignment gi|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus muscul... 511 e-145
Alignment gi|NP_033048.2| retinal dehydrogenase 2 [Mus musculus]. 454 e-128
Alignment gi|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus ... 432 e-121
Alignment gi|NP_082546.1| aldehyde dehydrogenase X, mitochondrial precurs... 409 e-114
Alignment gi|NP_033786.1| aldehyde dehydrogenase, mitochondrial precursor... 405 e-113
Alignment gi|NP_081682.1| aldehyde dehydrogenase family 1 member L1 [Mus ... 265 4e-71
Alignment gi|NP_705771.2| aldehyde dehydrogenase family 1 member L2, mito... 264 9e-71
Alignment gi|XP_001479238.2| PREDICTED: 10-formyltetrahydrofolate dehydro... 220 1e-57
Alignment gi|NP_848828.1| aldehyde dehydrogenase family 8 member A1 [Mus ... 179 2e-45
>ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].
Length = 501
Score = 546 bits (1407), Expect = e-156
Identities = 260/314 (82%), Positives = 282/314 (89%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSS A P +P PL +LK Q+TKIFINNEWHNSVSGKKFPV NPATEE +C
Sbjct: 1 MSSPAQPAVPAPLADLKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADV 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTMDASERG+L+NKLADL+ERDRLLLATME++NGGK+F+NAYL
Sbjct: 61 DKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYL 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
DLGGCI+ L+YCAGWADKIHG+TIP DG+ FTYTR EPIGVCGQIIPWNFP++M IWKI
Sbjct: 121 SDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKI 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPALSCGNTVVVKPAEQTPLTALH+ASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD
Sbjct: 181 GPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGSTQVGK+IKEAAGKSNLKRVTLELGGKSPCIVFADADLD AVEFAHHG+FYHQG
Sbjct: 241 KVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQG 300
Query: 956 QCCIAASRLFVEES 997
QCC+AASR+FVEES
Sbjct: 301 QCCVAASRIFVEES 314
>ref|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus musculus].
Length = 501
Score = 511 bits (1316), Expect = e-145
Identities = 246/314 (78%), Positives = 273/314 (86%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSS A P +P PL NLK Q+TKIFINNEWH+SVS KKFPV NPATEE +C
Sbjct: 1 MSSPAQPAVPAPLANLKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADV 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTMDASERG+L+NKLADL+ERDRLLLATMESMN GK+F++AYL
Sbjct: 61 DKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYL 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+D+ I+ L+Y AGWADKIHG+TIP DGN FTYTR EPIGVCGQIIPWN PL++ WK+
Sbjct: 121 LDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWKL 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPALSCGNTVVVKPAEQTPLTALH+ASLIKEAGFPPGVVNIVPGYGPTAG AISSHMD+D
Sbjct: 181 GPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDID 240
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KV+FTGST+VGK+IKEAAGKSNLKRVTLELGGKSPCIVFADADLD+AVEFAH G+F+HQG
Sbjct: 241 KVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQG 300
Query: 956 QCCIAASRLFVEES 997
Q C+AASRLFVEES
Sbjct: 301 QICVAASRLFVEES 314
>ref|NP_033048.2| retinal dehydrogenase 2 [Mus musculus].
Length = 518
Score = 454 bits (1168), Expect = e-128
Identities = 217/318 (68%), Positives = 260/318 (81%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV NPAT E++CE
Sbjct: 14 ADPAALMASLQLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR LATMES+NGGK F
Sbjct: 74 KVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGVVNI+PGYGPTAGAAI+SH
Sbjct: 194 TWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
+ +DK+AFTGST+VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 254 IGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 313
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 314 FNQGQCCTAGSRIFVEES 331
>ref|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus musculus].
Length = 512
Score = 432 bits (1111), Expect = e-121
Identities = 203/307 (66%), Positives = 247/307 (80%)
Frame = +2
Query: 74 PDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXX 253
P +P P+ NL+ ++TKIFINN+WH S SG+KF +NP+T EK+CE
Sbjct: 18 PALPRPIRNLEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEA 77
Query: 254 XRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGC 433
+ AFQ GSPWR +DA RGQL+++LADL+ERDR +LAT+E+M+ GK F +A+ +DL GC
Sbjct: 78 AQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGC 137
Query: 434 IRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSC 613
I+T RY AGWADKI GRTIP D N +TR EPIGVCG I PWNFPL+ML WK+ PAL C
Sbjct: 138 IKTFRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCC 197
Query: 614 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 793
GNTVV+KPAEQTPLTAL++ASLIKE GFPPGVVNIVPG+GPT GAAISSH ++K+AFTG
Sbjct: 198 GNTVVLKPAEQTPLTALYLASLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTG 257
Query: 794 STQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAA 973
ST+VGK+++EAA +SNLKRVTLELGGK+PCIV ADADLD AVE AH G+F++QGQCC AA
Sbjct: 258 STEVGKLVREAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAA 317
Query: 974 SRLFVEE 994
SR+FVEE
Sbjct: 318 SRVFVEE 324
>ref|NP_082546.1| aldehyde dehydrogenase X, mitochondrial precursor [Mus musculus].
Length = 519
Score = 409 bits (1052), Expect = e-114
Identities = 198/322 (61%), Positives = 246/322 (76%)
Frame = +2
Query: 32 CITGAEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEX 211
C+ G S++A +P P+ N + Y K+FINNEWH++VS K FP NP T E +
Sbjct: 13 CLQGRTTSYSTAAA--LPNPIPNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHV 70
Query: 212 XXXXXXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGG 391
R+AF++GSPWR MDASERG+L+N+LADL+ERDR+ LA++E+++ G
Sbjct: 71 AEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNG 130
Query: 392 KLFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFP 571
K F +Y++DL I+ RY AGWADK HG+TIPMDG F +TR EP+GVCGQIIPWNFP
Sbjct: 131 KPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFP 190
Query: 572 LVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAA 751
LVM WK+ PAL+ GNTVV+K AEQTPL+AL++ASLIKEAGFPPGVVNI+ GYGPTAGAA
Sbjct: 191 LVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAA 250
Query: 752 ISSHMDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAH 931
I+ HMDVDKVAFTGST+VG +I++AAG+SNLKRVTLELGGKSP IV ADAD++ AV+ H
Sbjct: 251 IAQHMDVDKVAFTGSTEVGHLIQKAAGESNLKRVTLELGGKSPSIVLADADMEHAVDQCH 310
Query: 932 HGLFYHQGQCCIAASRLFVEES 997
LF++ GQCC A SR FVEES
Sbjct: 311 EALFFNMGQCCCAGSRTFVEES 332
>ref|NP_033786.1| aldehyde dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 519
Score = 405 bits (1040), Expect = e-113
Identities = 196/314 (62%), Positives = 244/314 (77%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++A +P P + +IFINNEWH++VS K FP NP+T E +C+
Sbjct: 19 LSAAATSAVPAPNHQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDV 78
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
R AFQ+GSPWR MDAS+RG+L+ +LADLIERDR LA +E+++ GK + +YL
Sbjct: 79 DKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYL 138
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+TIP+DG+FF+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 139 VDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 198
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K AEQTPLTAL+VA+LIKEAGFPPGVVNIVPG+GPTAGAAI+SH VD
Sbjct: 199 GPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVD 258
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VG +I+ AAG SNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 259 KVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 318
Query: 956 QCCIAASRLFVEES 997
QCC A SR FV+E+
Sbjct: 319 QCCCAGSRTFVQEN 332
>ref|NP_081682.1| aldehyde dehydrogenase family 1 member L1 [Mus musculus].
Length = 902
Score = 265 bits (677), Expect = 4e-71
Identities = 134/297 (45%), Positives = 192/297 (64%), Gaps = 4/297 (1%)
Frame = +2
Query: 119 KIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMD 298
++FI E+ ++ K + NP +C+ ++AF+ G W ++
Sbjct: 423 QLFIGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGL-WGKIN 481
Query: 299 ASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIH 478
A +RG+L+ +LADL+E+ + LAT+E+++ G +++ A +G I+T RY AGW DKI
Sbjct: 482 ARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQ 541
Query: 479 GRTIPMD----GNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQ 646
G TIP++ T T+ EP+GVCG +IPWN+PL+ML WK L+ GNTVV+KPA+
Sbjct: 542 GATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQV 601
Query: 647 TPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEA 826
TPLTAL A L +AG P GVVNI+PG G G +S H DV K+ FTGST+VGK I ++
Sbjct: 602 TPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 661
Query: 827 AGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
SN+K+V+LELGGKSP I+FAD DL+ AV+ +F+++G+ CIAA RLFVE+S
Sbjct: 662 CALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDS 718
>ref|NP_705771.2| aldehyde dehydrogenase family 1 member L2, mitochondrial [Mus
musculus].
Length = 923
Score = 264 bits (674), Expect = 9e-71
Identities = 133/295 (45%), Positives = 191/295 (64%), Gaps = 4/295 (1%)
Frame = +2
Query: 125 FINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDAS 304
FIN ++ ++ G+ + NP +C + AF+ G W M+A
Sbjct: 446 FINGQFVDAEDGETYATVNPTDGTTICRVSYASLADVDRAVAAAKDAFENGE-WGRMNAR 504
Query: 305 ERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGR 484
+RG+L+ +LADL+E ++ LAT+E+++ G +++ A +G ++T RY AGW DKI G
Sbjct: 505 DRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGS 564
Query: 485 TIPMDG---NF-FTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTP 652
TIP++ N+ T+T+ EP+G C IIPWN+PL+ML WK L+ GNT+V+KPA+ TP
Sbjct: 565 TIPINQARPNYNLTFTKKEPLGACAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTP 624
Query: 653 LTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAG 832
LTAL A L +AGFP GV+NI+PG G AG +S H D+ K+ FTGST VGK I ++
Sbjct: 625 LTALKFAELTVKAGFPKGVINIIPGSGGVAGQRLSQHPDIRKLGFTGSTSVGKQIMKSCA 684
Query: 833 KSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
SNLK+V+LELGGKSP I+F+D DL+ AV +F+++G+ CIAA RLFVEE+
Sbjct: 685 VSNLKKVSLELGGKSPLIIFSDCDLEKAVRMGMGAVFFNKGENCIAAGRLFVEEA 739
>ref|XP_001479238.2| PREDICTED: 10-formyltetrahydrofolate dehydrogenase-like isoform 1
[Mus musculus].
Length = 378
Score = 220 bits (561), Expect = 1e-57
Identities = 107/192 (55%), Positives = 137/192 (71%), Gaps = 4/192 (2%)
Frame = +2
Query: 434 IRTLRYCAGWADKIHGRTIPMD----GNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGP 601
I+T RY AGW DKI G TIP++ T T+ EP+GVCG +IPWN+PL+ML WK
Sbjct: 3 IQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAA 62
Query: 602 ALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKV 781
L+ GNTVV+KPA+ TPLTAL A L +AG P GVVNI+PG G G +S H DV K+
Sbjct: 63 CLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKI 122
Query: 782 AFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQC 961
FTGST+VGK I ++ SN+K+V+LELGGKSP I+FAD DL+ AV+ +F+++G+
Sbjct: 123 GFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGEN 182
Query: 962 CIAASRLFVEES 997
CIAA RLFVE+S
Sbjct: 183 CIAAGRLFVEDS 194
>ref|NP_848828.1| aldehyde dehydrogenase family 8 member A1 [Mus musculus].
Length = 487
Score = 179 bits (455), Expect = 2e-45
Identities = 103/291 (35%), Positives = 154/291 (52%), Gaps = 7/291 (2%)
Frame = +2
Query: 146 NSVSGKKFPV------FNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDASE 307
N + GK P ++P+T E C+ R+AF W + E
Sbjct: 12 NFIGGKFLPCNSYIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAFPA---WSSRSPQE 68
Query: 308 RGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGW-ADKIHGR 484
R ++N+LAD++E+ LA ES + GK + A MD+ + R+ A +
Sbjct: 69 RSLVLNRLADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFASSNLHHVSEC 128
Query: 485 TIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTAL 664
T YT P+G+ G I PWN PL +L WKI PA++ GNTV+ KP+E T +TA
Sbjct: 129 TQMSHLGCMHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSEMTSVTAW 188
Query: 665 HVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSNL 844
L+ +AG PPGV+NIV G GP G A+ SH +V ++FTGS + I + + +
Sbjct: 189 MFCKLLDKAGVPPGVINIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSA-PHC 247
Query: 845 KRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
K+++LELGGK+P I+F DA+L+ + F +QG+ C+ SR+FV+ S
Sbjct: 248 KKLSLELGGKNPAIIFEDANLEECIPATVRSSFANQGEICLCTSRIFVQRS 298
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,719,895
Number of extensions: 850400
Number of successful extensions: 2196
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2154
Number of HSP's successfully gapped: 25
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122006.2| PREDICTED: retinal dehydrogenase 1-like, par... 445 e-125
Alignment gi|XP_003132963.2| PREDICTED: aldehyde dehydrogenase, mitochond... 409 e-114
Alignment gi|NP_001038076.1| aldehyde dehydrogenase, mitochondrial precur... 409 e-114
Alignment gi|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 397 e-111
Alignment gi|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 397 e-111
Alignment gi|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 m... 379 e-105
Alignment gi|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochond... 337 5e-93
Alignment gi|XP_003353471.1| PREDICTED: aldehyde dehydrogenase family 1 m... 269 2e-72
Alignment gi|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 m... 268 5e-72
Alignment gi|XP_003353395.1| PREDICTED: retinal dehydrogenase 2-like [Sus... 245 2e-65
>ref|XP_003122006.2| PREDICTED: retinal dehydrogenase 1-like, partial [Sus scrofa].
Length = 296
Score = 445 bits (1144), Expect = e-125
Identities = 217/233 (93%), Positives = 217/233 (93%)
Frame = +2
Query: 104 KFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSP 283
KFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCE RQAFQIGSP
Sbjct: 64 KFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSP 123
Query: 284 WRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGW 463
WRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGW
Sbjct: 124 WRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGW 183
Query: 464 ADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAE 643
ADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAE
Sbjct: 184 ADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAE 243
Query: 644 QTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQ 802
QTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQ
Sbjct: 244 QTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQ 296
Score = 64.3 bits (155), Expect = 1e-10
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 812 MIKEAAGKSNLKRVTLELGGKSPCIVFADAD 904
MIKEAAGKSNLKRVTLELGGKSPCIVFADAD
Sbjct: 1 MIKEAAGKSNLKRVTLELGGKSPCIVFADAD 31
>ref|XP_003132963.2| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 1
[Sus scrofa].
Length = 521
Score = 409 bits (1052), Expect = e-114
Identities = 194/313 (61%), Positives = 245/313 (78%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++ +P P + Y +IFINNEWH+++S K FP NP+T + +C
Sbjct: 21 LSAAPTQAVPAPNQQPEIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDV 80
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
R AFQ+GSPWR +DAS+RG+L+N+LADLIERDR LA +E+++ GK + +YL
Sbjct: 81 DRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYL 140
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+T+P+DG++F+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 141 VDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 200
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K +EQTPLTAL+VA+LIKEAGFPPGVVNIVPGYGPTAGAAI+SH DVD
Sbjct: 201 GPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIASHEDVD 260
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VG +I+ AAGKSNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 261 KVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 320
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 321 QCCCAGSRTFVQE 333
>ref|NP_001038076.1| aldehyde dehydrogenase, mitochondrial precursor [Sus scrofa].
Length = 521
Score = 409 bits (1052), Expect = e-114
Identities = 194/313 (61%), Positives = 245/313 (78%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++ +P P + Y +IFINNEWH+++S K FP NP+T + +C
Sbjct: 21 LSAAPTQAVPAPNQQPEIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDV 80
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
R AFQ+GSPWR +DAS+RG+L+N+LADLIERDR LA +E+++ GK + +YL
Sbjct: 81 DRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYL 140
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+T+P+DG++F+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 141 VDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 200
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K +EQTPLTAL+VA+LIKEAGFPPGVVNIVPGYGPTAGAAI+SH DVD
Sbjct: 201 GPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIASHEDVD 260
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VG +I+ AAGKSNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 261 KVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 320
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 321 QCCCAGSRTFVQE 333
>ref|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial [Sus scrofa].
Length = 517
Score = 397 bits (1019), Expect = e-111
Identities = 193/316 (61%), Positives = 238/316 (75%)
Frame = +2
Query: 50 PEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXX 229
P S++A+P P+ N +Y ++FINNEW ++VS K F NP T E +
Sbjct: 18 PYSSAAALPS---PILNPDIRYNQLFINNEWQDAVSKKTFQTVNPTTGEVIGHVAEGDQA 74
Query: 230 XXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNA 409
R+AF++GSPWR MDASERG+L+N+LADL+ERDR+ LA++E+++ GK F +
Sbjct: 75 DVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQES 134
Query: 410 YLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIW 589
Y +DL I+ RY AGWADK HG+TIPMDG F +TR EP+GVCGQIIPWNFPLVM W
Sbjct: 135 YALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQAW 194
Query: 590 KIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD 769
K+ PAL+ GNTVV+K AEQTPL+AL++ASLIKE GFPPGVVNI+ GYGPTAG AI+ HMD
Sbjct: 195 KLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPPGVVNILTGYGPTAGTAIAHHMD 254
Query: 770 VDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYH 949
V+KVAFTGST+VG +I++AAG SNLKRVTLELGGKSP IV ADAD+D AVE H LF++
Sbjct: 255 VNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFN 314
Query: 950 QGQCCIAASRLFVEES 997
GQCC A SR FVEES
Sbjct: 315 MGQCCCAGSRTFVEES 330
>ref|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial-like [Sus
scrofa].
Length = 517
Score = 397 bits (1019), Expect = e-111
Identities = 193/316 (61%), Positives = 238/316 (75%)
Frame = +2
Query: 50 PEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXX 229
P S++A+P P+ N +Y ++FINNEW ++VS K F NP T E +
Sbjct: 18 PYSSAAALPS---PILNPDIRYNQLFINNEWQDAVSKKTFQTVNPTTGEVIGHVAEGDQA 74
Query: 230 XXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNA 409
R+AF++GSPWR MDASERG+L+N+LADL+ERDR+ LA++E+++ GK F +
Sbjct: 75 DVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQES 134
Query: 410 YLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIW 589
Y +DL I+ RY AGWADK HG+TIPMDG F +TR EP+GVCGQIIPWNFPLVM W
Sbjct: 135 YALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQAW 194
Query: 590 KIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD 769
K+ PAL+ GNTVV+K AEQTPL+AL++ASLIKE GFPPGVVNI+ GYGPTAG AI+ HMD
Sbjct: 195 KLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPPGVVNILTGYGPTAGTAIAHHMD 254
Query: 770 VDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYH 949
V+KVAFTGST+VG +I++AAG SNLKRVTLELGGKSP IV ADAD+D AVE H LF++
Sbjct: 255 VNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFN 314
Query: 950 QGQCCIAASRLFVEES 997
GQCC A SR FVEES
Sbjct: 315 MGQCCCAGSRTFVEES 330
>ref|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 member A3, partial [Sus
scrofa].
Length = 655
Score = 379 bits (974), Expect = e-105
Identities = 177/244 (72%), Positives = 211/244 (86%)
Frame = +2
Query: 263 AFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRT 442
AFQ GSPWR +DA RG+L+++LADL+ERDR +LAT+E+M+ GK F +A+ +DL GCI+T
Sbjct: 224 AFQRGSPWRRLDALSRGRLLHQLADLVERDRTILATLETMDTGKPFLHAFFIDLEGCIKT 283
Query: 443 LRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNT 622
LRY AGWADKI G+TIP D N +TR EPIGVCG I PWNFPL+ML+WK+ PAL CGNT
Sbjct: 284 LRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNT 343
Query: 623 VVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQ 802
VVVKPAEQTPLTALH+ SLI+E GFPPGVVNIVPG+GPT GAAISSH ++K+AFTGST+
Sbjct: 344 VVVKPAEQTPLTALHLGSLIREVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTE 403
Query: 803 VGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRL 982
VGK++KEAA +SNLKRVTLELGGK+PCIV ADADLD AVE AH G+F++QGQCC AASR+
Sbjct: 404 VGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRV 463
Query: 983 FVEE 994
FVEE
Sbjct: 464 FVEE 467
>ref|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 2
[Sus scrofa].
Length = 474
Score = 337 bits (865), Expect = 5e-93
Identities = 170/313 (54%), Positives = 216/313 (69%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++ +P P + Y +IFINNEWH+++S K FP NP+T + +C
Sbjct: 21 LSAAPTQAVPAPNQQPEIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICH--------- 71
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
+ E D+ L E+++ GK + +YL
Sbjct: 72 ----------------------------------VAEGDKAL----ETLDNGKPYVISYL 93
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+T+P+DG++F+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 94 VDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 153
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K +EQTPLTAL+VA+LIKEAGFPPGVVNIVPGYGPTAGAAI+SH DVD
Sbjct: 154 GPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIASHEDVD 213
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VG +I+ AAGKSNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 214 KVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 273
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 274 QCCCAGSRTFVQE 286
>ref|XP_003353471.1| PREDICTED: aldehyde dehydrogenase family 1 member A3-like [Sus
scrofa].
Length = 340
Score = 269 bits (688), Expect = 2e-72
Identities = 127/218 (58%), Positives = 161/218 (73%)
Frame = +2
Query: 35 ITGAEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXX 214
+ +P+ S P +P P+ NL+ ++TKIFINNEW+ S SGKKF +NP+T EK+CE
Sbjct: 8 VENGQPDRKS---PALPRPIRNLEVKFTKIFINNEWNESKSGKKFATYNPSTLEKICEVE 64
Query: 215 XXXXXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGK 394
+ AFQ GSPWR +DA RG+L+++LADL+ERDR +LAT+E+M+ GK
Sbjct: 65 EGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGRLLHQLADLVERDRTILATLETMDTGK 124
Query: 395 LFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPL 574
F +A+ +DL GCI+TLRY AGWADKI G+TIP D N +TR EPIGVCG I PWNFPL
Sbjct: 125 PFLHAFFIDLEGCIKTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPL 184
Query: 575 VMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKE 688
+ML+WK+ PAL CGNTVVVKPAEQTPLTALH+ SLI+E
Sbjct: 185 LMLVWKLAPALCCGNTVVVKPAEQTPLTALHLGSLIRE 222
>ref|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 member L2, mitochondrial
[Sus scrofa].
Length = 923
Score = 268 bits (684), Expect = 5e-72
Identities = 135/295 (45%), Positives = 190/295 (64%), Gaps = 4/295 (1%)
Frame = +2
Query: 125 FINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDAS 304
FIN ++ ++ GK + NP +C+ + AF+ G W M+A
Sbjct: 446 FINGQFTDADDGKTYDTINPTDGSIICKVSYASLVDVDKAVAAAKDAFENGE-WGRMNAR 504
Query: 305 ERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGR 484
ERG+L+ +LADL+E ++ LAT+E+++ G +++ A +G ++T RY AGW DKI G
Sbjct: 505 ERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGS 564
Query: 485 TIPMD----GNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTP 652
TIP++ T+T+ EPIGVC IIPWN+PL+ML WK L+ GNT+V+KPA+ TP
Sbjct: 565 TIPINQARPNRNLTFTKKEPIGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTP 624
Query: 653 LTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAG 832
LTAL A L +AGFP GV+NI+PG G AG +S H D+ K+ FTGST +GK I ++
Sbjct: 625 LTALKFAELSVKAGFPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGKQIMKSCA 684
Query: 833 KSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
SNLK+V+LELGGKSP ++F D +LD AV +F+++G+ CIAA RLFVEES
Sbjct: 685 VSNLKKVSLELGGKSPLLIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEES 739
>ref|XP_003353395.1| PREDICTED: retinal dehydrogenase 2-like [Sus scrofa].
Length = 227
Score = 245 bits (626), Expect = 2e-65
Identities = 111/152 (73%), Positives = 134/152 (88%)
Frame = +2
Query: 350 DRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSE 529
D + L TMES+NGGK F A+ +DL G I+TLRY AGWADKIHG TIP+DG++FT+TR E
Sbjct: 17 DGVSLLTMESLNGGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHE 76
Query: 530 PIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGV 709
PIGVCGQIIPWNFPL+M WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV
Sbjct: 77 PIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGV 136
Query: 710 VNIVPGYGPTAGAAISSHMDVDKVAFTGSTQV 805
+NI+PGYGPTAGAAI+SH+ +DK+AFTGST++
Sbjct: 137 INILPGYGPTAGAAIASHVGIDKIAFTGSTEL 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,942,645
Number of extensions: 622882
Number of successful extensions: 1568
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1535
Number of HSP's successfully gapped: 25
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000680.2| retinal dehydrogenase 1 [Homo sapiens]. 560 e-159
Alignment gi|NP_003879.2| retinal dehydrogenase 2 isoform 1 [Homo sapiens]. 454 e-128
Alignment gi|NP_001193826.1| retinal dehydrogenase 2 isoform 4 [Homo sapi... 436 e-122
Alignment gi|NP_000684.2| aldehyde dehydrogenase family 1 member A3 [Homo... 430 e-121
Alignment gi|NP_000681.2| aldehyde dehydrogenase, mitochondrial isoform 1... 410 e-114
Alignment gi|NP_000683.3| aldehyde dehydrogenase X, mitochondrial precurs... 401 e-112
Alignment gi|NP_733798.1| retinal dehydrogenase 2 isoform 3 [Homo sapiens]. 381 e-106
Alignment gi|NP_733797.1| retinal dehydrogenase 2 isoform 2 [Homo sapiens]. 368 e-102
Alignment gi|NP_001191818.1| aldehyde dehydrogenase, mitochondrial isofor... 338 6e-93
Alignment gi|NP_001029345.2| aldehyde dehydrogenase family 1 member L2, m... 268 4e-72
>ref|NP_000680.2| retinal dehydrogenase 1 [Homo sapiens].
Length = 501
Score = 560 bits (1442), Expect = e-159
Identities = 272/314 (86%), Positives = 287/314 (91%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
MSSS PD+PV LT+LK QYTKIFINNEWH+SVSGKKFPVFNPATEE+LC+
Sbjct: 1 MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDV 60
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
RQAFQIGSPWRTMDASERG+L+ KLADLIERDRLLLATMESMNGGKL+SNAYL
Sbjct: 61 DKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYL 120
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
DL GCI+TLRYCAGWADKI GRTIP+DGNFFTYTR EPIGVCGQIIPWNFPLVMLIWKI
Sbjct: 121 NDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKI 180
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD+D
Sbjct: 181 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDID 240
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST+VGK+IKEAAGKSNLKRVTLELGGKSPCIV ADADLD AVEFAHHG+FYHQG
Sbjct: 241 KVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQG 300
Query: 956 QCCIAASRLFVEES 997
QCCIAASR+FVEES
Sbjct: 301 QCCIAASRIFVEES 314
>ref|NP_003879.2| retinal dehydrogenase 2 isoform 1 [Homo sapiens].
Length = 518
Score = 454 bits (1169), Expect = e-128
Identities = 215/318 (67%), Positives = 261/318 (82%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+T RY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASH 253
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
+ +DK+AFTGST+VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 254 IGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 313
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 314 FNQGQCCTAGSRIFVEES 331
>ref|NP_001193826.1| retinal dehydrogenase 2 isoform 4 [Homo sapiens].
Length = 497
Score = 436 bits (1122), Expect = e-122
Identities = 206/292 (70%), Positives = 245/292 (83%)
Frame = +2
Query: 122 IFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDA 301
IFINNEW NS SG+ FPV+NPAT E++CE R AF +GS WR MDA
Sbjct: 19 IFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDA 78
Query: 302 SERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHG 481
SERG+L++KLADL+ERDR +LATMES+NGGK F A+ +DL G I+T RY AGWADKIHG
Sbjct: 79 SERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHG 138
Query: 482 RTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTA 661
TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M WKI PAL CGNTVV+KPAEQTPL+A
Sbjct: 139 MTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSA 198
Query: 662 LHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSN 841
L++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH+ +DK+AFTGST+VGK+I+EAAG+SN
Sbjct: 199 LYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSN 258
Query: 842 LKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
LKRVTLELGGKSP I+FADADLD AVE AH G+F++QGQCC A SR+FVEES
Sbjct: 259 LKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEES 310
>ref|NP_000684.2| aldehyde dehydrogenase family 1 member A3 [Homo sapiens].
Length = 512
Score = 430 bits (1106), Expect = e-121
Identities = 203/307 (66%), Positives = 246/307 (80%)
Frame = +2
Query: 74 PDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXX 253
P +P P+ NL+ ++TKIFINNEWH S SGKKF NP+T E++CE
Sbjct: 18 PALPRPIRNLEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEA 77
Query: 254 XRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGC 433
+ AFQ GSPWR +DA RG+L+++LADL+ERDR LA +E+M+ GK F +A+ +DL GC
Sbjct: 78 AQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGC 137
Query: 434 IRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSC 613
IRTLRY AGWADKI G+TIP D N +TR EPIGVCG I PWNFPL+ML+WK+ PAL C
Sbjct: 138 IRTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCC 197
Query: 614 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 793
GNT+V+KPAEQTPLTAL++ SLIKEAGFPPGVVNIVPG+GPT GAAISSH ++K+AFTG
Sbjct: 198 GNTMVLKPAEQTPLTALYLGSLIKEAGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTG 257
Query: 794 STQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAA 973
ST+VGK++KEAA +SNLKRVTLELGGK+PCIV ADADLD AVE AH G+F++QGQCC AA
Sbjct: 258 STEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAA 317
Query: 974 SRLFVEE 994
SR+FVEE
Sbjct: 318 SRVFVEE 324
>ref|NP_000681.2| aldehyde dehydrogenase, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 517
Score = 410 bits (1054), Expect = e-114
Identities = 197/313 (62%), Positives = 245/313 (78%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++A +P P + +IFINNEWH++VS K FP NP+T E +C+
Sbjct: 17 LSAAATQAVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDV 76
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
R AFQ+GSPWR MDAS RG+L+N+LADLIERDR LA +E+++ GK + +YL
Sbjct: 77 DKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYL 136
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+TIP+DG+FF+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 137 VDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 196
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K AEQTPLTAL+VA+LIKEAGFPPGVVNIVPG+GPTAGAAI+SH DVD
Sbjct: 197 GPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVD 256
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST++G++I+ AAG SNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 257 KVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 316
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 317 QCCCAGSRTFVQE 329
>ref|NP_000683.3| aldehyde dehydrogenase X, mitochondrial precursor [Homo sapiens].
Length = 517
Score = 401 bits (1030), Expect = e-112
Identities = 196/321 (61%), Positives = 241/321 (75%)
Frame = +2
Query: 35 ITGAEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXX 214
+ G SS+A +P P+ N Y ++FINNEW ++VS K FP NP T E +
Sbjct: 12 LQGRTARYSSAAA--LPSPILNPDIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVA 69
Query: 215 XXXXXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGK 394
R+AF++GSPWR MDASERG+L+N+LADL+ERDR+ LA++E+++ GK
Sbjct: 70 EGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGK 129
Query: 395 LFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPL 574
F +Y +DL I+ RY AGWADK HG+TIPMDG F +TR EP+GVCGQIIPWNFPL
Sbjct: 130 PFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPL 189
Query: 575 VMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAI 754
VM WK+ PAL+ GNTVV+K AEQTPL+AL++ASLIKEAGFPPGVVNI+ GYGPTAGAAI
Sbjct: 190 VMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAI 249
Query: 755 SSHMDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHH 934
+ H+DVDKVAFTGST+VG +I++AAG SNLKRVTLELGGKSP IV ADAD++ AVE H
Sbjct: 250 AQHVDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHE 309
Query: 935 GLFYHQGQCCIAASRLFVEES 997
LF++ GQCC A SR FVEES
Sbjct: 310 ALFFNMGQCCCAGSRTFVEES 330
>ref|NP_733798.1| retinal dehydrogenase 2 isoform 3 [Homo sapiens].
Length = 422
Score = 381 bits (979), Expect = e-106
Identities = 178/235 (75%), Positives = 212/235 (90%)
Frame = +2
Query: 293 MDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADK 472
MDASERG+L++KLADL+ERDR +LATMES+NGGK F A+ +DL G I+T RY AGWADK
Sbjct: 1 MDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADK 60
Query: 473 IHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTP 652
IHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M WKI PAL CGNTVV+KPAEQTP
Sbjct: 61 IHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTP 120
Query: 653 LTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAG 832
L+AL++ +LIKEAGFPPGV+NI+PGYGPTAGAAI+SH+ +DK+AFTGST+VGK+I+EAAG
Sbjct: 121 LSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAG 180
Query: 833 KSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F++QGQCC A SR+FVEES
Sbjct: 181 RSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEES 235
>ref|NP_733797.1| retinal dehydrogenase 2 isoform 2 [Homo sapiens].
Length = 480
Score = 368 bits (944), Expect = e-102
Identities = 185/318 (58%), Positives = 224/318 (70%)
Frame = +2
Query: 44 AEPEMSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXX 223
A+P +++ +P P NL+ +YTKIFINNEW NS SG+ FPV+NPAT E++CE
Sbjct: 14 ADPAALMASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEAD 73
Query: 224 XXXXXXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFS 403
R AF +GS WR MDASERG+L++KLADL+ERDR +LATMES+NGGK F
Sbjct: 74 KADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFL 133
Query: 404 NAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVML 583
A+ +DL G I+T RY AGWADKIHG TIP+DG++FT+TR EPIGVCGQIIPWNFPL+M
Sbjct: 134 QAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMF 193
Query: 584 IWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSH 763
WKI PAL CGNTVV+KPAEQTPL+AL++ +LIKE
Sbjct: 194 AWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKE------------------------- 228
Query: 764 MDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLF 943
VGK+I+EAAG+SNLKRVTLELGGKSP I+FADADLD AVE AH G+F
Sbjct: 229 -------------VGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVF 275
Query: 944 YHQGQCCIAASRLFVEES 997
++QGQCC A SR+FVEES
Sbjct: 276 FNQGQCCTAGSRIFVEES 293
>ref|NP_001191818.1| aldehyde dehydrogenase, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 470
Score = 338 bits (866), Expect = 6e-93
Identities = 172/313 (54%), Positives = 217/313 (69%)
Frame = +2
Query: 56 MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXX 235
+S++A +P P + +IFINNEWH++VS K FP NP+T E +C+
Sbjct: 17 LSAAATQAVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQ--------- 67
Query: 236 XXXXXXXRQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYL 415
+ E D+ L E+++ GK + +YL
Sbjct: 68 ----------------------------------VAEGDKAL----ETLDNGKPYVISYL 89
Query: 416 MDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKI 595
+DL ++ LRY AGWADK HG+TIP+DG+FF+YTR EP+GVCGQIIPWNFPL+M WK+
Sbjct: 90 VDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 149
Query: 596 GPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 775
GPAL+ GN VV+K AEQTPLTAL+VA+LIKEAGFPPGVVNIVPG+GPTAGAAI+SH DVD
Sbjct: 150 GPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVD 209
Query: 776 KVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQG 955
KVAFTGST++G++I+ AAG SNLKRVTLELGGKSP I+ +DAD+D AVE AH LF++QG
Sbjct: 210 KVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQG 269
Query: 956 QCCIAASRLFVEE 994
QCC A SR FV+E
Sbjct: 270 QCCCAGSRTFVQE 282
>ref|NP_001029345.2| aldehyde dehydrogenase family 1 member L2, mitochondrial precursor
[Homo sapiens].
Length = 923
Score = 268 bits (686), Expect = 4e-72
Identities = 135/295 (45%), Positives = 190/295 (64%), Gaps = 4/295 (1%)
Frame = +2
Query: 125 FINNEWHNSVSGKKFPVFNPATEEKLCEXXXXXXXXXXXXXXXXRQAFQIGSPWRTMDAS 304
FIN ++ ++ GK + NP +C+ + AF+ G W M+A
Sbjct: 446 FINGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGE-WGRMNAR 504
Query: 305 ERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGR 484
ERG+L+ +LADL+E ++ LAT+E+++ G +++ A +G ++T RY AGW DKI G
Sbjct: 505 ERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGS 564
Query: 485 TIPMD----GNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTP 652
TIP++ T+T+ EP+GVC IIPWN+PL+ML WK L+ GNT+V+KPA+ TP
Sbjct: 565 TIPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTP 624
Query: 653 LTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAG 832
LTAL A L +AGFP GV+NI+PG G AG +S H D+ K+ FTGST +GK I ++
Sbjct: 625 LTALKFAELSVKAGFPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGKQIMKSCA 684
Query: 833 KSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEES 997
SNLK+V+LELGGKSP I+F D +LD AV +F+++G+ CIAA RLFVEES
Sbjct: 685 VSNLKKVSLELGGKSPLIIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEES 739
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,307,815
Number of extensions: 1000030
Number of successful extensions: 2541
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 2475
Number of HSP's successfully gapped: 40
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007638
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 283 9e-74
>Sscrofa_Chr01
|| Length = 315321322
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 225 aggaggatgttgacaaagcagtgaaggccgcaagacaagcttttcagatcggctctccat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252801320 aggaggatgttgacaaagcagtgaaggccgcaagacaagcttttcagatcggctctccat 252801379
Query: 285 ggcgtactatggatgcttcagagagaggacagctaataaacaaactggctgatttaattg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252801380 ggcgtactatggatgcttcagagagaggacagctaataaacaaactggctgatttaattg 252801439
Query: 345 aaagagatcgtctgctcctggct 367
|||||||||||||||||||||||
Sbjct: 252801440 aaagagatcgtctgctcctggct 252801462
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 368 acaatggagtcaatgaatggtggaaaactattttccaatgcatatctgatggatttagga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252803632 acaatggagtcaatgaatggtggaaaactattttccaatgcatatctgatggatttagga 252803691
Query: 428 ggctgcataagaacactgcgctactgtgctggctgggctgacaagatccatggccgcaca 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252803692 ggctgcataagaacactgcgctactgtgctggctgggctgacaagatccatggccgcaca 252803751
Query: 488 ataccgatgg 497
||||||||||
Sbjct: 252803752 ataccgatgg 252803761
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 560 tggaatttcccgttggtcatgctcatttggaagatagggcctgcccttagctgtggaaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252807018 tggaatttcccgttggtcatgctcatttggaagatagggcctgcccttagctgtggaaac 252807077
Query: 620 acagtggttgtcaaaccagctgagcaaacccctctcactgctcttcatgtggcatcttta 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252807078 acagtggttgtcaaaccagctgagcaaacccctctcactgctcttcatgtggcatcttta 252807137
Query: 680 ataaaagagg 689
||||||||||
Sbjct: 252807138 ataaaagagg 252807147
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 687 aggcaggatttcctcctggagtagtaaatattgttcccggttatgggcctaccgcagggg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252808401 aggcaggatttcctcctggagtagtaaatattgttcccggttatgggcctaccgcagggg 252808460
Query: 747 cagccatttcttctcacatggatgtagacaaagtggccttcacgggatctacacaggt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252808461 cagccatttcttctcacatggatgtagacaaagtggccttcacgggatctacacaggt 252808518
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 1 ctatcagaaccaattcgctgagcctgtcacctgtattacaggagctgaaccagaaatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252778623 ctatcagaaccaattcgctgagcctgtcacctgtattacaggagctgaaccagaaatgtc 252778682
Query: 61 gtcctcagccatgccagacatacctgtcccactgaccaatttgaagtttcaatatactaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 252778683 gtcctcagccatgccagacatacctgtcccactgaccaattagaagtttcaatatactaa 252778742
Query: 121 g 121
|
Sbjct: 252778743 g 252778743
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 120 agattttcataaataatgaatggcataattcagtgagtggcaagaaatttccagtcttta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252793171 agattttcataaataatgaatggcataattcagtgagtggcaagaaatttccagtcttta 252793230
Query: 180 atcctgcaactgaggaaaaactctgcgaggtagaagaaggagataagg 227
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252793231 atcctgcaactgaggaaaaactctgcgaggtagaagaaggagataagg 252793278
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 497 gatggaaactttttcacttatacaagaagtgagcctattggagtgtgtggccagatcatt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252805603 gatggaaactttttcacttatacaagaagtgagcctattggagtgtgtggccagatcatt 252805662
Query: 557 cct 559
|||
Sbjct: 252805663 cct 252805665
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,657,197
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 7
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)