Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068595.1| deoxyribonuclease-2-alpha precursor [Bos tau... 508 e-144
Alignment gi|NP_001069333.1| deoxyribonuclease-2-beta [Bos taurus]. 150 2e-36
>ref|NP_001068595.1| deoxyribonuclease-2-alpha precursor [Bos taurus].
Length = 365
Score = 508 bits (1309), Expect = e-144
Identities = 244/321 (76%), Positives = 263/321 (81%), Gaps = 1/321 (0%)
Frame = +3
Query: 270 MATLSPXXXXXXXWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE 449
MATLS WVPVGTLTCYGDSGQPVDWFVVYKLPAH+ GD Q+GLRYKY DE
Sbjct: 1 MATLSSLLLTALLWVPVGTLTCYGDSGQPVDWFVVYKLPAHTGSGDATQNGLRYKYFDEH 60
Query: 450 SGGWRDGAGSINSSTGALGRSLLPLYRNT-SQLAFLLYNDQPPKYRGSQHSSNRGHTKGV 626
S W DG G INS+TGA+GRSLLPLYRN SQLAF+LYNDQPPK S+ SS+RGHTKGV
Sbjct: 61 SEDWSDGVGFINSTTGAVGRSLLPLYRNNNSQLAFVLYNDQPPKSSESKDSSSRGHTKGV 120
Query: 627 LLLDQEGGFWLIHXXXXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYT 806
LLLDQEGGFWLIH + YGQTLICVSFPLTQFL+IS+QLTYT
Sbjct: 121 LLLDQEGGFWLIHSVPNFPPRASSAVYSWPPGAQKYGQTLICVSFPLTQFLDISKQLTYT 180
Query: 807 YPMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDD 986
YP+VYD++LEGDFA+KFPYLEEVVKGHHV Q PWNSSVTLTSK GA+FQSFAK GNFGDD
Sbjct: 181 YPLVYDHRLEGDFAQKFPYLEEVVKGHHVRQGPWNSSVTLTSKKGATFQSFAKFGNFGDD 240
Query: 987 LYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSK 1166
LYSGWL+EALGS LQVQFWQRS+GILPSNCSG QHV DVTQ AFPGPAGP FNATEDHSK
Sbjct: 241 LYSGWLSEALGSTLQVQFWQRSSGILPSNCSGAQHVFDVTQTAFPGPAGPAFNATEDHSK 300
Query: 1167 WCVAPERPWNCVGDMNRNKRE 1229
WCV P+ PW CVGDMNRN+RE
Sbjct: 301 WCVTPKGPWACVGDMNRNQRE 321
>ref|NP_001069333.1| deoxyribonuclease-2-beta [Bos taurus].
Length = 335
Score = 150 bits (379), Expect = 2e-36
Identities = 91/305 (29%), Positives = 145/305 (47%), Gaps = 7/305 (2%)
Frame = +3
Query: 327 LTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGALG 506
++C + G+ VDWF YKLP + + ++GL Y YLD + W +N++ LG
Sbjct: 26 ISCRSEEGEAVDWFTFYKLPKKQNE-ESRETGLEYLYLDSTTRSWSRSKQLMNATKSVLG 84
Query: 507 RSLLPLYR----NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHXXX 674
R+L LY ++ A+L+YND PK +S GHTK + +EG
Sbjct: 85 RTLQQLYEASASESNSTAYLIYNDGVPK--SMNYSRKYGHTK----VPEEG--------- 129
Query: 675 XXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARK 854
R GQ +C++F Q+ I QL P +Y + F +
Sbjct: 130 ----------YDYPPTGRRNGQAGMCITFKYNQYEAIDSQLLVYNPNIYRCSIPAAFRME 179
Query: 855 FPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQV 1034
++ ++ G + P TL S G F FAK +F DD+++ W+A+ L ++L
Sbjct: 180 LIHMPQLCAGSSSSEIPGRHLATLQSAQGQKFLHFAKSDSFLDDIFAAWMAQQLKTHLLT 239
Query: 1035 QFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVA---PERPWNCVG 1205
+ WQR LPSNCS HV ++ I + F++ +DH+KWC++ + W C+G
Sbjct: 240 ETWQRKRQELPSNCSLPHHVYNIKAIKISRHS--YFSSYQDHAKWCISRKGTKNRWTCIG 297
Query: 1206 DMNRN 1220
D+NR+
Sbjct: 298 DLNRS 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,946,425
Number of extensions: 2016479
Number of successful extensions: 8584
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8541
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,207,134
Effective search space: 4560490014
Effective search space used: 4560490014
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533902.1| PREDICTED: similar to Deoxyribonuclease II alph... 505 e-149
Alignment gi|XP_537097.2| PREDICTED: similar to deoxyribonuclease II beta... 186 5e-47
>ref|XP_533902.1| PREDICTED: similar to Deoxyribonuclease II alpha precursor (DNase II
alpha) (Acid DNase) (Lysosomal DNase II) [Canis
familiaris].
Length = 364
Score = 505 bits (1300), Expect(2) = e-149
Identities = 247/330 (74%), Positives = 263/330 (79%), Gaps = 2/330 (0%)
Frame = +3
Query: 270 MATLSPXXXXXXXWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE 449
MATLSP WVPV TLTCYGDSGQPVDWFVVYKLPA S PGD AQ GLRYKY+D++
Sbjct: 1 MATLSPLLLAALLWVPVRTLTCYGDSGQPVDWFVVYKLPAQSGPGDAAQRGLRYKYMDKD 60
Query: 450 SGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHS-SNRGHTKGV 626
SGGWRDGAGSINSS GA+GRSLLPLY+N SQLAFLLYNDQPPK GSQ + RGHTKGV
Sbjct: 61 SGGWRDGAGSINSSAGAVGRSLLPLYQNASQLAFLLYNDQPPKSSGSQDFVAIRGHTKGV 120
Query: 627 LLLDQEGGFWLIHXXXXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYT 806
LLLDQEGGFWL+H TYGQTL+CVSFPL QF I RQLTYT
Sbjct: 121 LLLDQEGGFWLVHSVPQFPAPASSGAYSWPSNAHTYGQTLLCVSFPLAQFWKIGRQLTYT 180
Query: 807 YPMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDD 986
YP+VYD+KL+ DFA+K PYL++VVKGHHVL PWNSSVTLTSKAG +FQSFAK G FGDD
Sbjct: 181 YPLVYDHKLDADFAQKVPYLKDVVKGHHVLHSPWNSSVTLTSKAGDTFQSFAKYGKFGDD 240
Query: 987 LYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSK 1166
LYSGWLAEALGSNLQVQFWQ S GILPSNCS VQHVLDVTQIAFPGPAGP F+A EDHSK
Sbjct: 241 LYSGWLAEALGSNLQVQFWQNSHGILPSNCSRVQHVLDVTQIAFPGPAGPAFSAREDHSK 300
Query: 1167 WCVAPERPWNCVGDMNRN-KRESIGVGAHC 1253
WCVAPE PW CVGDMNRN E G G C
Sbjct: 301 WCVAPEGPWACVGDMNRNLGEEHRGGGTLC 330
Score = 42.4 bits (98), Expect(2) = e-149
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +2
Query: 1229 EHRGGGTLCAQLPALWK 1279
EHRGGGTLCAQLPALWK
Sbjct: 322 EHRGGGTLCAQLPALWK 338
>ref|XP_537097.2| PREDICTED: similar to deoxyribonuclease II beta isoform 1 precursor
[Canis familiaris].
Length = 358
Score = 186 bits (471), Expect = 5e-47
Identities = 110/315 (34%), Positives = 160/315 (50%), Gaps = 8/315 (2%)
Frame = +3
Query: 324 TLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGAL 503
T++C + G+ VDWFV YKLP + Q+GL Y YLD + WR +N++ AL
Sbjct: 25 TISCRNEEGEAVDWFVFYKLPKQQDK-ESRQTGLEYLYLDSTTRSWRRSKQLVNTTKSAL 83
Query: 504 GRSLLPLYR----NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHXX 671
GR+L LY + A+LLYND P +S GHTKG+LL ++ GFWLIH
Sbjct: 84 GRTLQQLYEACASKNNNTAYLLYNDGVPA--SVTYSRKYGHTKGLLLWNRVQGFWLIHSI 141
Query: 672 XXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFAR 851
R +GQT IC++F Q+ I QL P +Y + F +
Sbjct: 142 PRFPPTPEEGYDYPPTGRR-HGQTGICITFKYNQYEAIDSQLLVCNPNIYSCSIPTIFHQ 200
Query: 852 KFPYLEEVVKGHHVLQE-PWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNL 1028
+ Y+ ++ E P +L S G F FAK +F DD++ W+A+ L ++L
Sbjct: 201 ELVYMPQLCAAGSTSSEIPGQRLTSLQSARGQKFIHFAKFDSFLDDIFVAWMAQHLKTHL 260
Query: 1029 QVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVAPERP---WNC 1199
+ WQR LPSNCS HV +V I G + F++ +DH+KWCV+ +R W C
Sbjct: 261 LTETWQRKGQELPSNCSLPYHVYNVKAIKISGQS--YFSSYQDHAKWCVSQKRTKNRWTC 318
Query: 1200 VGDMNRNKRESIGVG 1244
+GD+NR+ ++ G
Sbjct: 319 IGDLNRSPYQAFRSG 333
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,385,465
Number of extensions: 2067200
Number of successful extensions: 8764
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8731
Number of HSP's successfully gapped: 3
Length of query: 426
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 320
Effective length of database: 15,340,888
Effective search space: 4909084160
Effective search space used: 4909084160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034192.1| deoxyribonuclease-2-alpha precursor [Mus muscul... 446 e-129
Alignment gi|NP_064341.3| deoxyribonuclease-2-beta precursor [Mus musculu... 186 4e-47
>ref|NP_034192.1| deoxyribonuclease-2-alpha precursor [Mus musculus].
Length = 353
Score = 446 bits (1146), Expect(2) = e-129
Identities = 216/322 (67%), Positives = 242/322 (75%), Gaps = 1/322 (0%)
Frame = +3
Query: 270 MATLSPXXXXXXXWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE 449
MATL WVP L+CYGDSGQPVDWFVVYKLPAHS D + GL YKY+D+
Sbjct: 1 MATLRSLLLAALLWVPAEALSCYGDSGQPVDWFVVYKLPAHSGSRDTPK-GLTYKYMDQN 59
Query: 450 SGGWRDGAGSINSSTGALGRSLLPLYR-NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGV 626
S GW+DG G INSS GA+GRSL PLYR N+SQLAFLLYNDQPPK ++ S+ GHTKGV
Sbjct: 60 SDGWQDGVGYINSSEGAVGRSLQPLYRKNSSQLAFLLYNDQPPKSSSARDSTGHGHTKGV 119
Query: 627 LLLDQEGGFWLIHXXXXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYT 806
LLLDQEGGFWL+H +T+GQTL+CVS P TQF I +QLTYT
Sbjct: 120 LLLDQEGGFWLVHSVPRFPPPASSGAYTWPPNAQTFGQTLLCVSLPFTQFARIGKQLTYT 179
Query: 807 YPMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDD 986
YP+VYD+KLEG FA+K P LE V+K HVL EPWNSSV LTS+AGA+FQSFAK G FGDD
Sbjct: 180 YPLVYDHKLEGFFAQKLPDLETVIKNQHVLHEPWNSSVILTSQAGATFQSFAKFGKFGDD 239
Query: 987 LYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSK 1166
LYSGWLAEALG+NLQVQFWQ S GILPSNCSG VLDVTQ FPGP+ F+ATEDHSK
Sbjct: 240 LYSGWLAEALGTNLQVQFWQNSPGILPSNCSGAYQVLDVTQTGFPGPSRLTFSATEDHSK 299
Query: 1167 WCVAPERPWNCVGDMNRNKRES 1232
WCVAP+ PW CVGDMNRNK E+
Sbjct: 300 WCVAPQGPWACVGDMNRNKAET 321
Score = 35.0 bits (79), Expect(2) = e-129
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 1232 HRGGGTLCAQLPALWK 1279
HRGGGT+C QLP+ WK
Sbjct: 322 HRGGGTVCTQLPSFWK 337
>ref|NP_064341.3| deoxyribonuclease-2-beta precursor [Mus musculus].
Length = 354
Score = 186 bits (471), Expect = 4e-47
Identities = 110/313 (35%), Positives = 161/313 (51%), Gaps = 7/313 (2%)
Frame = +3
Query: 327 LTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGALG 506
++C + G+ VDWF+ YKLP +S ++GL+Y YLD W INS+ ALG
Sbjct: 26 ISCRNEYGEAVDWFIFYKLPKRTSKAS-EEAGLQYLYLDSTRQTWNKSLYLINSTRSALG 84
Query: 507 RSLLPLY---RNTSQLAFLLYNDQPPKYRGS-QHSSNRGHTKGVLLLDQEGGFWLIHXXX 674
R+L LY +T+ A+L+YND P GS +S GH KG+L+ ++ GFWLIH
Sbjct: 85 RTLQHLYDTHNSTNDTAYLIYNDGVP---GSVNYSRQYGHAKGLLVWNRTQGFWLIHSVP 141
Query: 675 XXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARK 854
R YGQT IC++F +QF I QL P +Y + F K
Sbjct: 142 KFPPVHGYEYPTSG---RRYGQTGICITFGYSQFEEIDFQLLVLQPNIYSCFIPSTFHWK 198
Query: 855 FPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQV 1034
Y+ + L+ P L S G +F FAK + DD+++GW+A+ L ++L
Sbjct: 199 LIYMPRMCANSSSLKIPVRYLAELHSAQGLNFVHFAKSSFYTDDIFTGWIAQKLKTHLLA 258
Query: 1035 QFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVA---PERPWNCVG 1205
Q WQ+ LPSNCS HV ++ I + F++ +DHSKWCV+ W C+G
Sbjct: 259 QTWQKKKQELPSNCSLPYHVYNIKSIGVTSKS--YFSSRQDHSKWCVSIKGSANRWTCIG 316
Query: 1206 DMNRNKRESIGVG 1244
D+NR+ +++ G
Sbjct: 317 DLNRSLHQALRGG 329
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,361,242
Number of extensions: 1664774
Number of successful extensions: 6514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6488
Number of HSP's successfully gapped: 3
Length of query: 426
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 322
Effective length of database: 12,493,815
Effective search space: 4023008430
Effective search space used: 4023008430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999361.1| deoxyribonuclease-2-alpha precursor [Sus scrofa]. 608 e-174
Alignment gi|XP_003361193.1| PREDICTED: deoxyribonuclease-2-beta [Sus scr... 178 7e-45
>ref|NP_999361.1| deoxyribonuclease-2-alpha precursor [Sus scrofa].
Length = 364
Score = 608 bits (1569), Expect = e-174
Identities = 292/320 (91%), Positives = 292/320 (91%)
Frame = +3
Query: 270 MATLSPXXXXXXXWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE 449
MATLSP WVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE
Sbjct: 1 MATLSPLLLAALLWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEE 60
Query: 450 SGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVL 629
SGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVL
Sbjct: 61 SGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVL 120
Query: 630 LLDQEGGFWLIHXXXXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTY 809
LLDQEGGFWLIH RTYGQTLICVSFPLTQFLNISRQLTYTY
Sbjct: 121 LLDQEGGFWLIHSVPNFPPPSSSAAYSWPPSARTYGQTLICVSFPLTQFLNISRQLTYTY 180
Query: 810 PMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDL 989
PMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDL
Sbjct: 181 PMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDL 240
Query: 990 YSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKW 1169
YSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKW
Sbjct: 241 YSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKW 300
Query: 1170 CVAPERPWNCVGDMNRNKRE 1229
CVAPERPW CVGDMNRNKRE
Sbjct: 301 CVAPERPWTCVGDMNRNKRE 320
>ref|XP_003361193.1| PREDICTED: deoxyribonuclease-2-beta [Sus scrofa].
Length = 360
Score = 178 bits (451), Expect = 7e-45
Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 7/313 (2%)
Frame = +3
Query: 327 LTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGALG 506
++C + G+ VDWF YKLP + ++GL Y YLD + GW+ +N+++ LG
Sbjct: 26 ISCRNEEGEAVDWFTFYKLPKRQDK-EGRETGLEYLYLDSTTRGWKRSKKLMNTTSSVLG 84
Query: 507 RSLLPLYR----NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHXXX 674
R+L LY + A+L+YND PK + +S GHTKG+LL ++ GFWLIH
Sbjct: 85 RTLQQLYEACASENNDTAYLIYNDGVPKSKN--YSRKYGHTKGLLLWNRVQGFWLIHSIP 142
Query: 675 XXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARK 854
R GQT IC++F Q+ I QL P VY + F ++
Sbjct: 143 QFPPIPEEGYDYPPTGKRN-GQTGICITFKYNQYEAIGSQLLVCNPNVYGCSIPVTFHQE 201
Query: 855 FPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQV 1034
++ ++ + P TL S G +F FAK F DD+++ W+A+ L ++L
Sbjct: 202 LVHMPQLCARSRSSEIPSRHFTTLQSAQGQNFLHFAKSDFFLDDIFAAWMAQRLKTHLLT 261
Query: 1035 QFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVA---PERPWNCVG 1205
+ WQR LPSNCS HV ++ I + F++ +DH+KWC++ + W C+G
Sbjct: 262 ETWQRKRQELPSNCSLPYHVYNIKAIKISRQS--YFSSYQDHAKWCISQKGTKNHWTCIG 319
Query: 1206 DMNRNKRESIGVG 1244
D+NR+ ++ G
Sbjct: 320 DLNRSPYQAFRSG 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,782,315
Number of extensions: 1307321
Number of successful extensions: 5682
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5659
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 324
Effective length of database: 8,804,438
Effective search space: 2852637912
Effective search space used: 2852637912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001366.1| deoxyribonuclease-2-alpha precursor [Homo sapie... 449 e-126
Alignment gi|NP_067056.2| deoxyribonuclease-2-beta isoform 1 precursor [H... 178 1e-44
Alignment gi|NP_490649.1| deoxyribonuclease-2-beta isoform 2 [Homo sapien... 84 4e-16
>ref|NP_001366.1| deoxyribonuclease-2-alpha precursor [Homo sapiens].
Length = 360
Score = 449 bits (1155), Expect = e-126
Identities = 217/316 (68%), Positives = 243/316 (76%), Gaps = 2/316 (0%)
Frame = +3
Query: 312 VPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSS 491
VP G LTCYGDSGQPVDWFVVYKLPA G+ AQ GL+YKYLDE SGGWRDG INS
Sbjct: 12 VPAGALTCYGDSGQPVDWFVVYKLPALRGSGEAAQRGLQYKYLDESSGGWRDGRALINSP 71
Query: 492 TGALGRSLLPLYR-NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHX 668
GA+GRSL PLYR NTSQLAFLLYNDQPP+ +Q SS RGHTKGVLLLD +GGFWL+H
Sbjct: 72 EGAVGRSLQPLYRSNTSQLAFLLYNDQPPQPSKAQDSSMRGHTKGVLLLDHDGGFWLVHS 131
Query: 669 XXXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFA 848
TYGQTL+CVSFP QF + +QLTYTYP VY+Y+LEG FA
Sbjct: 132 VPNFPPPASSAAYSWPHSACTYGQTLLCVSFPFAQFSKMGKQLTYTYPWVYNYQLEGIFA 191
Query: 849 RKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNL 1028
++FP LE VVKGHHV QEPWNSS+TLTS+AGA FQSFAK FGDDLYSGWLA ALG+NL
Sbjct: 192 QEFPDLENVVKGHHVSQEPWNSSITLTSQAGAVFQSFAKFSKFGDDLYSGWLAAALGTNL 251
Query: 1029 QVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVAPERPWNCVGD 1208
QVQFW ++ GILPSNCS + VL+V QIAFPGPAGP+FN+TEDHSKWCV+P+ PW CVGD
Sbjct: 252 QVQFWHKTVGILPSNCSDIWQVLNVNQIAFPGPAGPSFNSTEDHSKWCVSPKGPWTCVGD 311
Query: 1209 MNRNK-RESIGVGAHC 1253
MNRN+ E G G C
Sbjct: 312 MNRNQGEEQRGGGTLC 327
>ref|NP_067056.2| deoxyribonuclease-2-beta isoform 1 precursor [Homo sapiens].
Length = 361
Score = 178 bits (451), Expect = 1e-44
Identities = 102/314 (32%), Positives = 158/314 (50%), Gaps = 7/314 (2%)
Frame = +3
Query: 324 TLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGAL 503
T++C + G+ VDWF YKLP + + ++GL Y YLD + WR +N + L
Sbjct: 29 TISCRNEEGKAVDWFTFYKLPKRQNK-ESGETGLEYLYLDSTTRSWRKSEQLMNDTKSVL 87
Query: 504 GRSLLPLYR----NTSQLAFLLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHXX 671
GR+L LY ++ A+L+YND PK +S GHTKG+LL ++ GFWLIH
Sbjct: 88 GRTLQQLYEAYASKSNNTAYLIYNDGVPK--PVNYSRKYGHTKGLLLWNRVQGFWLIHSI 145
Query: 672 XXXXXXXXXXXXXXXXXXRTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFAR 851
R GQ+ IC++F Q+ I QL P VY + F +
Sbjct: 146 PQFPPIPEEGYDYPPTGRRN-GQSGICITFKYNQYEAIDSQLLVCNPNVYSCSIPATFHQ 204
Query: 852 KFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQ 1031
+ ++ ++ + P TL S G F FAK +F DD+++ W+A+ L ++L
Sbjct: 205 ELIHMPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLL 264
Query: 1032 VQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVA---PERPWNCV 1202
+ WQR LPSNCS HV ++ I + F++ +DH+KWC++ + W C+
Sbjct: 265 TETWQRKRQELPSNCSLPYHVYNIKAIKLSRHS--YFSSYQDHAKWCISQKGTKNRWTCI 322
Query: 1203 GDMNRNKRESIGVG 1244
GD+NR+ ++ G
Sbjct: 323 GDLNRSPHQAFRSG 336
>ref|NP_490649.1| deoxyribonuclease-2-beta isoform 2 [Homo sapiens].
Length = 153
Score = 83.6 bits (205), Expect = 4e-16
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Frame = +3
Query: 903 PWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQVQFWQRSAGILPSNCSG 1082
P TL S G F FAK +F DD+++ W+A+ L ++L + WQR LPSNCS
Sbjct: 14 PGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSL 73
Query: 1083 VQHVLDVTQIAFPGPAGPNFNATEDHSKWCVA---PERPWNCVGDMNRNKRESIGVG 1244
HV ++ I + F++ +DH+KWC++ + W C+GD+NR+ ++ G
Sbjct: 74 PYHVYNIKAIKLSRHS--YFSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSG 128
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,028,510
Number of extensions: 2017436
Number of successful extensions: 8210
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8182
Number of HSP's successfully gapped: 3
Length of query: 426
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,835,944
Effective search space: 4762338024
Effective search space used: 4762338024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007648
(1280 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 726 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 726 bits (366), Expect = 0.0
Identities = 366/366 (100%)
Strand = Plus / Minus
Query: 1 gtccgccaccagcaggagctggctgcacacaggccggagcgggggtgggagcctacggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450477 gtccgccaccagcaggagctggctgcacacaggccggagcgggggtgggagcctacggga 66450418
Query: 61 gtgacttgcccaaaaggaagccccgcgccccccaccgccctccccgccttttcaaatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450417 gtgacttgcccaaaaggaagccccgcgccccccaccgccctccccgccttttcaaatctc 66450358
Query: 121 tgattctcgactcgcgggcggagtctctgtcctcgtgaagtcccgggtttggggtttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450357 tgattctcgactcgcgggcggagtctctgtcctcgtgaagtcccgggtttggggtttggg 66450298
Query: 181 gaagtgaaagtcaaaaggggccgggctgggcagagctcgtgacccccgcgcctcgctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450297 gaagtgaaagtcaaaaggggccgggctgggcagagctcgtgacccccgcgcctcgctgtc 66450238
Query: 241 ccaacacagattcctagacctttagctgtatggccacgctgagccccctgctattggccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450237 ccaacacagattcctagacctttagctgtatggccacgctgagccccctgctattggccg 66450178
Query: 301 cgctgctctgggtccctgtggggaccctgacctgctacggagactcggggcagcctgtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450177 cgctgctctgggtccctgtggggaccctgacctgctacggagactcggggcagcctgtgg 66450118
Query: 361 actggt 366
||||||
Sbjct: 66450117 actggt 66450112
Score = 567 bits (286), Expect = e-159
Identities = 296/298 (99%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 984 gacctgtactctggctggttggcagaagcccttggcagcaacctgcaggtccaattctgg 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448053 gacctgtactctggctggttggcagaagcccttggcagcaacctgcaggtccaattctgg 66447994
Query: 1044 caaagatctgctggaatcctgccctccaactgctctggggtccagcacgtgctggatgtg 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66447993 caaagatctgctggaatcctgccctccaactgctctggggtccagcacgtgctggatgtg 66447934
Query: 1104 acccagatagcctttcctggcccagcggggccaaacttcaatgccacagaagaccactcc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66447933 acccagatagcctttcctggcccagcggggccaaacttcaatgccacagaagaccactcc 66447874
Query: 1164 aagtggtgtgtagccccagaaaggccctggaactgtgtgggtgacatgaatcggaacaaa 1223
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 66447873 aagtggtgtgtagccccagaaaggccctggacctgtgtgggtgacatgaatcggaacaaa 66447814
Query: 1224 agaga-gagcatcggggtgggggcacactgtgtgcccagctgcctgcactctggaagg 1280
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66447813 agagaggagcatcggggtgggggcacactgtgtgcccagctgcctgcactctggaagg 66447756
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 787 gcagacagctgacctacacctaccccatggtgtatgattacaagctggagggagacttcg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448883 gcagacagctgacctacacctaccccatggtgtatgattacaagctggagggagacttcg 66448824
Query: 847 ccaggaaattcccctacctggaggaggtagtcaagggccatcatgttctccaggaaccct 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448823 ccaggaaattcccctacctggaggaggtagtcaagggccatcatgttctccaggaaccct 66448764
Query: 907 ggaacagcagtgtaacactcacatcaaaagcaggggcctcattccagagctttgctaagt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448763 ggaacagcagtgtaacactcacatcaaaagcaggggcctcattccagagctttgctaagt 66448704
Query: 967 gtggaaactttggagacg 984
||||||||||||||||||
Sbjct: 66448703 gtggaaactttggagacg 66448686
Score = 355 bits (179), Expect = 4e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 364 ggttcgttgtctacaagctgccggcccacagcagtcccggagatgtggctcagagcgggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66450024 ggttcgttgtctacaagctgccggcccacagcagtcccggagatgtggctcagagcgggc 66449965
Query: 424 tccggtacaagtacttggacgaggagtcaggaggctggcgcgacggcgcggggtccatca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449964 tccggtacaagtacttggacgaggagtcaggaggctggcgcgacggcgcggggtccatca 66449905
Query: 484 acagctccacaggcgccttgggccgcagcctgctgccgctgtaccgaaacaccagccag 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449904 acagctccacaggcgccttgggccgcagcctgctgccgctgtaccgaaacaccagccag 66449846
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 621 ggtgtactgctcctggaccaagaagggggcttctggctaatccacagcgttccaaacttc 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449139 ggtgtactgctcctggaccaagaagggggcttctggctaatccacagcgttccaaacttc 66449080
Query: 681 cctccaccttcctcctctgctgcatacagctggcctcctagcgcccgaacctatgggcag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449079 cctccaccttcctcctctgctgcatacagctggcctcctagcgcccgaacctatgggcag 66449020
Query: 741 acactgatctgcgtatctttccctctcacccagttcctgaatatcag 787
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449019 acactgatctgcgtatctttccctctcacccagttcctgaatatcag 66448973
Score = 163 bits (82), Expect = 3e-37
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 539 ccagctagctttcctgctctacaatgatcaaccgcctaaatacagaggatctcagcactc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449755 ccagctagctttcctgctctacaatgatcaaccgcctaaatacagaggatctcagcactc 66449696
Query: 599 ttccaaccgtgggcacacgaagggtg 624
|| |||||||||||||||||||||||
Sbjct: 66449695 tttcaaccgtgggcacacgaagggtg 66449670
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,581,123
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 6
Length of query: 1280
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1259
Effective length of database: 2,808,413,156
Effective search space: 3535792163404
Effective search space used: 3535792163404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)