Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033637.1| propionyl-CoA carboxylase beta chain, mitoch... 120 4e-40
>ref|NP_001033637.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Bos
taurus].
Length = 539
Score = 120 bits (302), Expect(2) = 4e-40
Identities = 96/291 (32%), Positives = 146/291 (50%), Gaps = 7/291 (2%)
Frame = +2
Query: 164 MWATLRLALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIYQENYKQMKALVDQLYERA 343
M A +R+A+ AR+ V LR+ GA +L TQP S + +++ +
Sbjct: 1 MAAAMRVAVAG-ARLSV-VLRSLRGAG-RSLCTQPVSVN--------------ERIENKR 43
Query: 344 QKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQF-----AGYQLYGDE-EV 505
Q LGG ++ RGKL ARER+ L+DPGS F+E F A + + D+ +
Sbjct: 44 QAALLGGGQRRIDAQHKRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAADKNKF 102
Query: 506 PAGGIITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSG 685
P ++TG GR++G + + D T+ GG+ +K + + A+ P I L DSG
Sbjct: 103 PGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQALTVGAPVIGLNDSG 162
Query: 686 GANLPRQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIV 862
GA + E A D F R + +S I QI+++MG C G Y PA+ D +V
Sbjct: 163 GARIQEGVESLAGYADIFLRN-----VTASGVIPQISLIMGPCAGGAVYSPALTDFTFMV 217
Query: 863 RKQGTIFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+ +F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 218 KDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 268
Score = 63.9 bits (154), Expect(2) = 4e-40
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 1075 EPSEDPLFPADELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYE 1254
+PS D L P EL IV + +++ ++I +VD +F E Y ++ GFAR+
Sbjct: 293 DPS-DRLVP--ELDTIVPLESTKAYNMVDIIHAVVDEREFFEIMPNYAKNIIVGFARMNG 349
Query: 1255 YPIGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMP 1419
+GI+GN +G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+
Sbjct: 350 RTVGIVGNQPKVASGCLDINSSVKGARFVRFCDSFNIPLITFVDVPGFLPGTAQEYGGII 409
Query: 1420 R 1422
R
Sbjct: 410 R 410
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,048,288
Number of extensions: 1561009
Number of successful extensions: 5304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5292
Number of HSP's successfully gapped: 2
Length of query: 502
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 396
Effective length of database: 14,174,046
Effective search space: 5612922216
Effective search space used: 5612922216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535268.2| PREDICTED: similar to methylcrotonoyl-Coenzyme ... 487 e-137
Alignment gi|XP_534271.2| PREDICTED: similar to Propionyl-CoA carboxylase... 119 2e-39
Alignment gi|XP_864683.1| PREDICTED: similar to Propionyl-CoA carboxylase... 119 2e-38
Alignment gi|XP_864718.1| PREDICTED: similar to Propionyl-CoA carboxylase... 101 5e-34
Alignment gi|XP_864736.1| PREDICTED: similar to Propionyl-CoA carboxylase... 99 4e-33
Alignment gi|XP_864704.1| PREDICTED: similar to Propionyl-CoA carboxylase... 119 1e-32
>ref|XP_535268.2| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
(predicted) [Canis familiaris].
Length = 563
Score = 487 bits (1253), Expect = e-137
Identities = 283/471 (60%), Positives = 324/471 (68%), Gaps = 23/471 (4%)
Frame = +2
Query: 164 MWATLRLALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIYQENYKQMKALVDQLYERA 343
MWA LRLA RPCAR + RAYHG S LGTQ D SA+YQENY+QMKALVDQL+ERA
Sbjct: 1 MWAALRLAPRPCARALIPRPRAYHGDSPGRLGTQLDLGSAVYQENYEQMKALVDQLHERA 60
Query: 344 QKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQLYGDEEVPAGGII 523
+KIRLGG +KAR RH+SRGKLLARERVD+LIDPGSPFLELSQFAGY+LY +EEVPAG II
Sbjct: 61 EKIRLGGSQKARERHISRGKLLARERVDNLIDPGSPFLELSQFAGYKLYVNEEVPAGSII 120
Query: 524 TGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLPR 703
TGIGRVSGVECMI+ANDATIKGGTYYPVTVKK LRAQEIAMQNRLPCIYLVDSGGANLP
Sbjct: 121 TGIGRVSGVECMIIANDATIKGGTYYPVTVKKHLRAQEIAMQNRLPCIYLVDSGGANLPF 180
Query: 704 QAEIFADRDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGTIF 883
QA+IF DRDHFGR FYNQAIMSS+ I QIAVVMG CTAGGAYVPAMADEN+IVRKQGTIF
Sbjct: 181 QADIFPDRDHFGRIFYNQAIMSSQNIAQIAVVMGSCTAGGAYVPAMADENVIVRKQGTIF 240
Query: 884 LGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHALHWXXXXXXXXXXXXSW 1063
L GPPLVKAAT EEVSAEDLGGADLHCRKSGV+DYYALDD HALH
Sbjct: 241 LAGPPLVKAATKEEVSAEDLGGADLHCRKSGVTDYYALDDYHALH----------LTRKI 290
Query: 1064 MLPLNLLKILYFLLMNCMESLVPT--LRGTLMSERSSLESWMEANSVNSRPYMETL*LQD 1237
+ LN K L + + L P L G + ++L+ + V +R + D
Sbjct: 291 VKNLNYQKKLDVTIEPSEDPLFPADELYGIV---GTNLKRQFDVREVIAR-------IVD 340
Query: 1238 LLEYMNTQ*GS*ETMESSFLN--------LQKRGLILSSYAAKG---ISLCCS------F 1366
+ + +T+ + F + G++ S A KG I +CC F
Sbjct: 341 GSRFSEFKALYGDTLVTGFARIFGYPIGIIGNNGVLFSESAKKGAHFIQVCCQRNIPLLF 400
Query: 1367 KTLLDSWXVENTKPKECXGWSQDGD---CSGLCXRA-QDTVIIGGSYGAGN 1507
+ + V + E G ++DG + C + TVIIGGSYGAGN
Sbjct: 401 LQNITGFMV--GRDYEAEGIAKDGAKMVAAVACANVPKITVIIGGSYGAGN 449
>ref|XP_534271.2| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 1 [Canis familiaris].
Length = 554
Score = 119 bits (299), Expect(2) = 2e-39
Identities = 103/309 (33%), Positives = 147/309 (47%), Gaps = 7/309 (2%)
Frame = +2
Query: 110 RIGAGGSHAFLPAFVPAAMWATLRLALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIY 289
R+GAG A A A L V VS LRA +V L +QP S
Sbjct: 7 RLGAGRRAKMAAAMRVVAAGARLS--------VVVSGLRA----AVRGLCSQPVSVHERI 54
Query: 290 QENYKQMKALVDQLYERAQKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQ 469
+ K+ ALV GG + A+H RGKL ARER+ L+DPGS F+E
Sbjct: 55 EN--KRSAALVG-----------GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDM 99
Query: 470 FAGYQL--YG----DEEVPAGGIITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRA 631
F ++ +G + P ++TG GR++G + + D T+ GG+ +K +
Sbjct: 100 FVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKI 159
Query: 632 QEIAMQNRLPCIYLVDSGGANLPRQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGF 808
+ AM P I L DSGGA + E A D F R +++S I QI+++MG
Sbjct: 160 MDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRN-----VLASGVIPQISLIMGP 214
Query: 809 CTAGGAYVPAMADENIIVRKQGTIFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDY 988
C G Y PA+ D +V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV+
Sbjct: 215 CAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHR 274
Query: 989 YALDDNHAL 1015
+D AL
Sbjct: 275 AFENDVDAL 283
Score = 62.8 bits (151), Expect(2) = 2e-39
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Frame = +1
Query: 1108 ELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYEYPIGIIGN--- 1278
EL IV + +++ ++I +VD +F E Y ++ GFAR+ +GI+GN
Sbjct: 316 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 375
Query: 1279 --NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMPR 1422
+G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+ R
Sbjct: 376 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIR 425
>ref|XP_864683.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 2 [Canis familiaris].
Length = 405
Score = 119 bits (298), Expect(2) = 2e-38
Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQL--YG----DEEVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F ++ +G + P +
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAAEKNKFPGDSV 107
Query: 521 ITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLP 700
+TG GR++G + + D T+ GG+ +K + + AM P I L DSGGA +
Sbjct: 108 VTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQ 167
Query: 701 RQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGT 877
E A D F R +++S I QI+++MG C G Y PA+ D +V+
Sbjct: 168 EGVESLAGYADIFLRN-----VLASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSY 222
Query: 878 IFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 223 LFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 268
Score = 60.1 bits (144), Expect(2) = 2e-38
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Frame = +1
Query: 1108 ELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYEYPIGIIGN--- 1278
EL IV + +++ ++I +VD +F E Y ++ GFAR+ +GI+GN
Sbjct: 301 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 360
Query: 1279 --NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXG 1392
+G L S+ KGA FV+ C NIPL+ ++ GF+ G
Sbjct: 361 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPG 400
>ref|XP_864718.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 4 [Canis familiaris].
Length = 520
Score = 101 bits (252), Expect(3) = 5e-34
Identities = 79/226 (34%), Positives = 112/226 (49%), Gaps = 7/226 (3%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQL--YG----DEEVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F ++ +G + P +
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAAEKNKFPGDSV 107
Query: 521 ITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLP 700
+TG GR++G V V Q+ Q AM P I L DSGGA +
Sbjct: 108 VTGRGRING-----------------RLVYVFSQIMDQ--AMTVGAPVIGLNDSGGARIQ 148
Query: 701 RQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGT 877
E A D F R +++S I QI+++MG C G Y PA+ D +V+
Sbjct: 149 EGVESLAGYADIFLRN-----VLASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSY 203
Query: 878 IFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 204 LFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 249
Score = 62.8 bits (151), Expect(3) = 5e-34
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Frame = +1
Query: 1108 ELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYEYPIGIIGN--- 1278
EL IV + +++ ++I +VD +F E Y ++ GFAR+ +GI+GN
Sbjct: 282 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 341
Query: 1279 --NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMPR 1422
+G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+ R
Sbjct: 342 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIR 391
Score = 20.4 bits (41), Expect(3) = 5e-34
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPK+
Sbjct: 393 GAKLLYAFAEATVPKV 408
>ref|XP_864736.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 5 [Canis familiaris].
Length = 516
Score = 98.6 bits (244), Expect(3) = 4e-33
Identities = 74/220 (33%), Positives = 106/220 (48%), Gaps = 1/220 (0%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQLYGDEEVPAGGIITGIGR 538
GG + A+H RGKL ARER+ L+DPGS F+E F ++ G
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRC------------ADFGM 95
Query: 539 VSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLPRQAEIF 718
+ D T+ GG+ +K + + AM P I L DSGGA + E
Sbjct: 96 AAEKN-----KDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESL 150
Query: 719 AD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGTIFLGGP 895
A D F R +++S I QI+++MG C G Y PA+ D +V+ +F+ GP
Sbjct: 151 AGYADIFLRN-----VLASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 205
Query: 896 PLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 206 DVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 245
Score = 62.8 bits (151), Expect(3) = 4e-33
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Frame = +1
Query: 1108 ELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYEYPIGIIGN--- 1278
EL IV + +++ ++I +VD +F E Y ++ GFAR+ +GI+GN
Sbjct: 278 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPK 337
Query: 1279 --NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMPR 1422
+G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+ R
Sbjct: 338 VASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIR 387
Score = 20.4 bits (41), Expect(3) = 4e-33
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPK+
Sbjct: 389 GAKLLYAFAEATVPKV 404
>ref|XP_864704.1| PREDICTED: similar to Propionyl-CoA carboxylase beta chain,
mitochondrial precursor (PCCase beta subunit)
(Propanoyl-CoA:carbon dioxide ligase beta subunit)
isoform 3 [Canis familiaris].
Length = 551
Score = 119 bits (298), Expect(3) = 1e-32
Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQL--YG----DEEVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F ++ +G + P +
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAAEKNKFPGDSV 107
Query: 521 ITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLP 700
+TG GR++G + + D T+ GG+ +K + + AM P I L DSGGA +
Sbjct: 108 VTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQ 167
Query: 701 RQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGT 877
E A D F R +++S I QI+++MG C G Y PA+ D +V+
Sbjct: 168 EGVESLAGYADIFLRN-----VLASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSY 222
Query: 878 IFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 223 LFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 268
Score = 40.4 bits (93), Expect(3) = 1e-32
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Frame = +1
Query: 1108 ELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGF-------ARIYEYPIG 1266
EL IV + +++ ++I +VD +F E Y ++ G + +P G
Sbjct: 301 ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGLRPGPKTGTKPLSHP-G 359
Query: 1267 IIGNN-----------GVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEG 1413
I ++ G L S+ KGA FV+ C NIPL+ ++ GF+ G E G
Sbjct: 360 IPSSSFLSAWTISLILGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGG 419
Query: 1414 MPR 1422
+ R
Sbjct: 420 IIR 422
Score = 20.4 bits (41), Expect(3) = 1e-32
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPK+
Sbjct: 424 GAKLLYAFAEATVPKV 439
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,832,934
Number of extensions: 1623280
Number of successful extensions: 5621
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5596
Number of HSP's successfully gapped: 16
Length of query: 502
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 395
Effective length of database: 15,307,552
Effective search space: 6046483040
Effective search space used: 6046483040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084302.1| methylcrotonoyl-CoA carboxylase beta chain, mit... 496 e-140
Alignment gi|NP_080111.1| propionyl-CoA carboxylase beta chain, mitochond... 117 3e-39
>ref|NP_084302.1| methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Mus
musculus].
Length = 563
Score = 496 bits (1278), Expect = e-140
Identities = 283/470 (60%), Positives = 323/470 (68%), Gaps = 22/470 (4%)
Frame = +2
Query: 164 MWATLRLALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIYQENYKQMKALVDQLYERA 343
MW LR ALRPC R V RAYHG SVA LGTQPDS+S+ YQENY+QMKALV QL+ERA
Sbjct: 1 MWGALRSALRPCCRAAVPPQRAYHGDSVARLGTQPDSASSTYQENYEQMKALVSQLHERA 60
Query: 344 QKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQLYGDEEVPAGGII 523
Q +RLGG EKARARH SRGKLL R+R+D+LIDPGSPFLE SQFAGYQLYGDEEVPAGGII
Sbjct: 61 QYVRLGGSEKARARHTSRGKLLPRDRIDNLIDPGSPFLEFSQFAGYQLYGDEEVPAGGII 120
Query: 524 TGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLPR 703
TGIGRVSGVECMIVANDAT+KGGTYYPVTVKK +RAQEIA+QNRLPCIYLVDSGGANLPR
Sbjct: 121 TGIGRVSGVECMIVANDATVKGGTYYPVTVKKHVRAQEIALQNRLPCIYLVDSGGANLPR 180
Query: 704 QAEIFADRDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGTIF 883
QA+ F DRDHFGR FYNQAIMSS+ I QIAVVMG CTAGGAYVPAMADENIIV+KQGTIF
Sbjct: 181 QADTFPDRDHFGRIFYNQAIMSSKNITQIAVVMGSCTAGGAYVPAMADENIIVQKQGTIF 240
Query: 884 LGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHALHWXXXXXXXXXXXXSW 1063
L GPPLVKAATGEEVSAEDLGGADLHCRKSGV+D+YALDD+HALH
Sbjct: 241 LAGPPLVKAATGEEVSAEDLGGADLHCRKSGVTDHYALDDHHALH----------LTRKV 290
Query: 1064 MLPLNLLKILYFLLMNCMESLVPTLRGTLMSERSSLESWMEANSVNSRPYMETL-*LQDL 1240
+ LN K + + E L P L + AN S E + + D
Sbjct: 291 VRSLNYQKKMDVTIEPSEEPLFPA---------DELYGIVGANLKRSFDVREVIARIVDG 341
Query: 1241 LEYMNTQ*GS*ETMESSFLN--------LQKRGLILSSYAAKG---ISLCCS------FK 1369
+ + +T+ + F + G++ S A KG + LCC F
Sbjct: 342 SRFNEFKALYGDTLVTGFARIFGYPVGIIGNNGVLFSESAKKGAHFVQLCCQRNIPLLFL 401
Query: 1370 TLLDSWXVENTKPKECXGWSQDGD---CSGLCXRA-QDTVIIGGSYGAGN 1507
+ + V + E G ++DG + C + + TVIIGGSYGAGN
Sbjct: 402 QNITGFMV--GRDYEAEGIAKDGAKMVAAVACAKVPKITVIIGGSYGAGN 449
>ref|NP_080111.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Mus
musculus].
Length = 541
Score = 117 bits (292), Expect(3) = 3e-39
Identities = 77/215 (35%), Positives = 114/215 (53%), Gaps = 7/215 (3%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQF-----AGYQLYGDE-EVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F A + + D+ + P +
Sbjct: 52 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FMESDMFVEHRCADFGMAADKNKFPGDSV 109
Query: 521 ITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLP 700
+TG GR++G + + D T+ GG+ +K + + A+ P I L DSGGA +
Sbjct: 110 VTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQ 169
Query: 701 RQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGT 877
E A D F R + +S I QI+++MG C G Y PA+ D +V+
Sbjct: 170 EGVESLAGYADIFLRN-----VTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSY 224
Query: 878 IFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVS 982
+F+ GP +VK+ T E+V+ E LGGA H SGV+
Sbjct: 225 LFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVA 259
Score = 64.3 bits (155), Expect(3) = 3e-39
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 1075 EPSEDPLFPADELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYE 1254
+PS D L P EL +V + +++ ++I ++D +F E Y +V GFAR+
Sbjct: 295 DPS-DRLVP--ELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYAKNIVVGFARMNG 351
Query: 1255 YPIGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMP 1419
+GI+GN +G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+
Sbjct: 352 RTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGII 411
Query: 1420 R 1422
R
Sbjct: 412 R 412
Score = 20.8 bits (42), Expect(3) = 3e-39
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPKI
Sbjct: 414 GAKLLYAFAEATVPKI 429
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,587,238
Number of extensions: 1344330
Number of successful extensions: 4575
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4562
Number of HSP's successfully gapped: 6
Length of query: 502
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 396
Effective length of database: 12,433,743
Effective search space: 4923762228
Effective search space used: 4923762228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999066.1| propionyl-CoA carboxylase beta chain, mitochond... 122 2e-41
>ref|NP_999066.1| propionyl-CoA carboxylase beta chain, mitochondrial precursor [Sus
scrofa].
Length = 539
Score = 122 bits (306), Expect(3) = 2e-41
Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 9/282 (3%)
Frame = +2
Query: 164 MWATLRL-ALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIYQENYKQMKALVDQLYER 340
M A +R+ A R RV V +L A V +L TQP S + +++ +
Sbjct: 1 MAAAVRVTAARARLRVVVRSLHA----GVRSLCTQPVSVN--------------ERIENK 42
Query: 341 AQKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQF-----AGYQLYGDE-E 502
Q LGG ++ RGKL ARER+ L+DPGS F+E F A + + D+ +
Sbjct: 43 RQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGS-FIESDMFVEHRCADFGMAADKNK 101
Query: 503 VPAGGIITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDS 682
P ++TG GR++G + + D T+ GG+ +K + + AM P I L DS
Sbjct: 102 FPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVIGLNDS 161
Query: 683 GGANLPRQAEIFAD-RDHFGRTFYNQAIMSSEGIV-QIAVVMGFCTAGGAYVPAMADENI 856
GGA + E A D F R +S+ G++ QI+++MG C G Y PA+ D
Sbjct: 162 GGARIQEGVESLAGYADIFLRN------VSASGVIPQISLIMGPCAGGAVYSPALTDFTF 215
Query: 857 IVRKQGTIFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVS 982
+V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV+
Sbjct: 216 MVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVA 257
Score = 65.9 bits (159), Expect(3) = 2e-41
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 1075 EPSEDPLFPADELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYE 1254
+PS D L P EL +V R +D+ ++I IVD F E Y ++ GFAR+
Sbjct: 293 DPS-DRLVP--ELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNG 349
Query: 1255 YPIGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMP 1419
+GI+GN +G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+
Sbjct: 350 RTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGII 409
Query: 1420 R 1422
R
Sbjct: 410 R 410
Score = 20.8 bits (42), Expect(3) = 2e-41
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPKI
Sbjct: 412 GAKLLYAFAEATVPKI 427
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,398,497
Number of extensions: 1004044
Number of successful extensions: 3403
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3394
Number of HSP's successfully gapped: 3
Length of query: 502
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,779,541
Effective search space: 3503036859
Effective search space used: 3503036859
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071415.1| methylcrotonoyl-CoA carboxylase beta chain, mit... 496 e-140
Alignment gi|NP_000523.2| propionyl-CoA carboxylase beta chain, mitochond... 118 3e-39
Alignment gi|NP_001171485.1| propionyl-CoA carboxylase beta chain, mitoch... 109 1e-36
>ref|NP_071415.1| methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Homo
sapiens].
Length = 563
Score = 496 bits (1278), Expect = e-140
Identities = 284/470 (60%), Positives = 326/470 (69%), Gaps = 22/470 (4%)
Frame = +2
Query: 164 MWATLRLALRPCARVPVSTLRAYHGASVAALGTQPDSSSAIYQENYKQMKALVDQLYERA 343
MWA LRLALRPCAR + RAYHG SVA+LGTQPD SA+YQENYKQMKALV+QL+ER
Sbjct: 1 MWAVLRLALRPCARASPAGPRAYHGDSVASLGTQPDLGSALYQENYKQMKALVNQLHERV 60
Query: 344 QKIRLGGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQFAGYQLYGDEEVPAGGII 523
+ I+LGG EKARA H+SRGKLL RER+D+LIDPGSPFLELSQFAGYQLY +EEVP GGII
Sbjct: 61 EHIKLGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGII 120
Query: 524 TGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLPR 703
TGIGRVSGVECMI+ANDAT+KGG YYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGA LPR
Sbjct: 121 TGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPR 180
Query: 704 QAEIFADRDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGTIF 883
QA++F DRDHFGRTFYNQAIMSS+ I QIAVVMG CTAGGAYVPAMADENIIVRKQGTIF
Sbjct: 181 QADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIF 240
Query: 884 LGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHALHWXXXXXXXXXXXXSW 1063
L GPPLVKAATGEEVSAEDLGGADLHCRKSGVSD++ALDD+HALH
Sbjct: 241 LAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALH----------LTRKV 290
Query: 1064 MLPLNLLKILYFLLMNCMESLVPTLRGTLMSERSSLESWMEANSVNSRPYMETL-*LQDL 1240
+ LN K L + E L P L + AN S E + + D
Sbjct: 291 VRNLNYQKKLDVTIEPSEEPLFPA---------DELYGIVGANLKRSFDVREVIARIVDG 341
Query: 1241 LEYMNTQ*GS*ETMESSFLNL--------QKRGLILSSYAAKG---ISLCCS------FK 1369
+ + +T+ + F + G++ S A KG + LCC F
Sbjct: 342 SRFTEFKAFYGDTLVTGFARIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFL 401
Query: 1370 TLLDSWXVENTKPKECXGWSQDGD---CSGLCXRA-QDTVIIGGSYGAGN 1507
+ + V + E G ++DG + C + + T+IIGGSYGAGN
Sbjct: 402 QNITGFMV--GREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGN 449
>ref|NP_000523.2| propionyl-CoA carboxylase beta chain, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 539
Score = 118 bits (295), Expect(2) = 3e-39
Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQF-----AGYQLYGDE-EVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F A + + D+ + P +
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAADKNKFPGDSV 107
Query: 521 ITGIGRVSGVECMIVANDATIKGGTYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGANLP 700
+TG GR++G + + D T+ GG+ +K + + A+ P I L DSGGA +
Sbjct: 108 VTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQ 167
Query: 701 RQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTAGGAYVPAMADENIIVRKQGT 877
E A D F R + +S I QI+++MG C G Y PA+ D +V+
Sbjct: 168 EGVESLAGYADIFLRN-----VTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSY 222
Query: 878 IFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYALDDNHAL 1015
+F+ GP +VK+ T E+V+ E+LGGA H SGV+ +D AL
Sbjct: 223 LFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDAL 268
Score = 63.5 bits (153), Expect(2) = 3e-39
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 1075 EPSEDPLFPADELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYE 1254
+PS D L P EL IV + +++ ++I +VD +F E Y ++ GFAR+
Sbjct: 293 DPS-DRLVP--ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNG 349
Query: 1255 YPIGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMP 1419
+GI+GN +G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+
Sbjct: 350 RTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGII 409
Query: 1420 R 1422
R
Sbjct: 410 R 410
>ref|NP_001171485.1| propionyl-CoA carboxylase beta chain, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 559
Score = 109 bits (273), Expect(3) = 1e-36
Identities = 81/246 (32%), Positives = 120/246 (48%), Gaps = 27/246 (10%)
Frame = +2
Query: 359 GGDEKARARHVSRGKLLARERVDSLIDPGSPFLELSQF-----AGYQLYGDE-EVPAGGI 520
GG + A+H RGKL ARER+ L+DPGS F+E F A + + D+ + P +
Sbjct: 50 GGQRRIDAQH-KRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAADKNKFPGDSV 107
Query: 521 ITGIGRVSG--------------------VECMIVANDATIKGGTYYPVTVKKQLRAQEI 640
+TG GR++G + + A D T+ GG+ +K + +
Sbjct: 108 VTGRGRINGRLVYVFSQQIIGWAQWLPLVISALWEAEDFTVFGGSLSGAHAQKICKIMDQ 167
Query: 641 AMQNRLPCIYLVDSGGANLPRQAEIFAD-RDHFGRTFYNQAIMSSEGIVQIAVVMGFCTA 817
A+ P I L DSGGA + E A D F R + +S I QI+++MG C
Sbjct: 168 AITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRN-----VTASGVIPQISLIMGPCAG 222
Query: 818 GGAYVPAMADENIIVRKQGTIFLGGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDYYAL 997
G Y PA+ D +V+ +F+ GP +VK+ T E+V+ E+LGGA H SGV+
Sbjct: 223 GAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFE 282
Query: 998 DDNHAL 1015
+D AL
Sbjct: 283 NDVDAL 288
Score = 63.5 bits (153), Expect(3) = 1e-36
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 1075 EPSEDPLFPADELYGIVGANLKRNFDVREVIARIVDGSKFSEFKALYGDTLVTGFARIYE 1254
+PS D L P EL IV + +++ ++I +VD +F E Y ++ GFAR+
Sbjct: 313 DPS-DRLVP--ELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNG 369
Query: 1255 YPIGIIGN-----NGVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMXGREYEAEGMP 1419
+GI+GN +G L S+ KGA FV+ C NIPL+ ++ GF+ G E G+
Sbjct: 370 RTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGII 429
Query: 1420 R 1422
R
Sbjct: 430 R 430
Score = 20.4 bits (41), Expect(3) = 1e-36
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 1425 GAKMVTAVACAXVPKI 1472
GAK++ A A A VPK+
Sbjct: 432 GAKLLYAFAEATVPKV 447
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,602,698
Number of extensions: 1591338
Number of successful extensions: 5536
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5522
Number of HSP's successfully gapped: 8
Length of query: 502
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 395
Effective length of database: 14,770,016
Effective search space: 5834156320
Effective search space used: 5834156320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007650
(1507 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 569 e-159
>Sscrofa_Chr16
|| Length = 86898991
Score = 569 bits (287), Expect = e-159
Identities = 290/291 (99%)
Strand = Plus / Plus
Query: 3 cggaggtcgacttgagaatctgggaggtttcaggcgagttagggctgcctggagcggagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863689 cggaggtcgacttgagaatctgggaggtttcaggcgagttagggctgcctggagcggagt 51863748
Query: 63 ggagctgtggcctcgagacggggagttgaagggggaagcttgggctccgaatcggcgcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863749 ggagctgtggcctcgagacggggagttgaagggggaagcttgggctccgaatcggcgcag 51863808
Query: 123 gcggctctcacgcgttccttcctgcctttgtgcccgctgccatgtgggctaccctgaggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863809 gcggctctcacgcgttccttcctgcctttgtgcccgctgccatgtgggctaccctgaggt 51863868
Query: 183 tggccctgaggccgtgcgcccgcgtccctgtctccacgctgcgcgcctatcatggggctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863869 tggccctgaggccgtgcgcccgcgtccctgtctccacgctgcgcgcctatcatggggctt 51863928
Query: 243 ccgtggccgcactgggcactcaaccagactctagctctgccatctaccagg 293
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863929 ccgtggtcgcactgggcactcaaccagactctagctctgccatctaccagg 51863979
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 546 gagtagaatgcatgattgttgccaatgatgccaccatcaaaggaggcacctactacccag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51904806 gagtagaatgcatgattgttgccaatgatgccaccatcaaaggaggcacctactacccag 51904865
Query: 606 tgaccgtgaaaaaacaattacgggcacaggaaatcgcgatgcagaacaggcttccctgca 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51904866 tgaccgtgaaaaaacaattacgggcacaggaaatcgcgatgcagaacaggcttccctgca 51904925
Query: 666 tttacttgg 674
|||||||||
Sbjct: 51904926 tttacttgg 51904934
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 785 cagatagcagtggtcatgggcttctgtacagccggaggagcgtacgtgcctgccatggct 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51922167 cagatagcagtggtcatgggcttctgtacagccggaggagcgtacgtgcctgccatggct 51922226
Query: 845 gatgaaaacatcatcgtacgcaagcagggtaccattttcttgggaggacctcctttggt 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51922227 gatgaaaacatcatcgtacgcaagcagggtaccattttcttgggaggacctcctttggt 51922285
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 674 gttgactcaggaggggcaaacttacctcgacaagcagagatatttgcagatcgagatcac 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51906798 gttgactcaggaggggcaaacttacctcgacaagcagagatatttgcagatcgagatcac 51906857
Query: 734 tttggccgcacattctataatcaggcaattatgtcttctgaaggtattgtacag 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51906858 tttggccgcacattctataatcaggcaattatgtcttctgaaggtattgtacag 51906911
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 444 ggtctccattcttggaattatcccagtttgcaggttaccagttgtatggagatgaggagg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51900631 ggtctccattcttggaattatcccagtttgcaggttaccagttgtatggagatgaggagg 51900690
Query: 504 tccccgcaggtggcatcattacaggcattgggagagtgtcggg 546
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51900691 tccccgcaggtggcatcattacaggcattgggagagtgtcggg 51900733
Score = 196 bits (99), Expect = 2e-47
Identities = 125/132 (94%), Gaps = 2/132 (1%)
Strand = Plus / Minus
Query: 1378 ggattcatggntggtagagaatacgaagccgaaggaat-gccnaggatggagccaagatg 1436
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 51876791 ggattcatggttggtagagaatacgaagccgaaggaattgccaaggatggagccaagatg 51876732
Query: 1437 gtgactgcagtggcctgtgccnacgtgcccaagat-actgtcatcattgggggatcatat 1495
||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 51876731 gtgactgcagtggcctgtgccaacgtgccaaagataactgtcatcatcgggggatcatat 51876672
Query: 1496 ggggctggaaac 1507
||||||||||||
Sbjct: 51876671 ggggctggaaac 51876660
Score = 182 bits (92), Expect = 4e-43
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 965 aggaagtccggggtaagtgactactacgctttggatgataatcacgcccttcac-tggtt 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 51934870 aggaagtccggggtaagtgactactacgctttggatgataatcacgcccttcacttggtt 51934929
Query: 1024 aggacgattgtgaggaatctaaattatcagaagaagttggatgt 1067
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 51934930 aggacgattgtgaggaatctaaattatcagaagaaattggatgt 51934973
Score = 178 bits (90), Expect = 6e-42
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 1066 gttaccattgaaccttctgaagatcctttatttcctgctgatgaattgtatggaatcgtt 1125
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 51935084 gttaccgttgaaccttctgaagatcctctatttcctgctgatgaattgtatggaatcgtt 51935143
Query: 1126 ggtgccaaccttaagaggaactttgatgtccgagaggt 1163
||||||||||||||||||||||||||||||||||||||
Sbjct: 51935144 ggtgccaaccttaagaggaactttgatgtccgagaggt 51935181
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 357 taggaggtgatgagaaagcccgcgcacgtcacgtttcaagaggaaaactattagccagag 416
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 51898974 taggaggtgatgagaaagcccgcgcacgtcacgtttcaagaggaaaactgttagccagag 51899033
Query: 417 aaagagtggacagtcttatcgacccagggt 446
||||||||||||||||||||||||||||||
Sbjct: 51899034 aaagagtggacagtcttatcgacccagggt 51899063
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 1233 aggatttgctagaatatatgaatacccaatagggatcataggaaacaatggagtcctctt 1292
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 51885649 aggatttgctagaatatatggatacccaatagggatcataggaaacaatggagtcctctt 51885590
Query: 1293 ttctgaatctgcaaaaaagg 1312
||||||||||||||||||||
Sbjct: 51885589 ttctgaatctgcaaaaaagg 51885570
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1160 aggtcatcgctagaatcgtggatggaagcaaattcagtgaattcaaggccttatatggag 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51939334 aggtcatcgctagaatcgtggatggaagcaaattcagtgaattcaaggccttatatggag 51939393
Query: 1220 acactttagttacagg 1235
||||||||||||||||
Sbjct: 51939394 acactttagttacagg 51939409
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1310 agggggctcattttgtccagttatgctgccaaaggaatatccctctgctgttccttcaaa 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51882164 agggggctcattttgtccagttatgctgccaaaggaatatccctctgctgttccttcaaa 51882105
Query: 1370 acattactgg 1379
||||||||||
Sbjct: 51882104 acattactgg 51882095
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 291 aggaaaactacaaacagatgaaagcactagttgatcaactctatgagcgagcacagaaaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51890584 aggaaaactacaaacagatgaaagcactagttgatcaactctatgagcgagcacagaaaa 51890643
Query: 351 taagactagg 360
||||||||||
Sbjct: 51890644 taagactagg 51890653
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 901 ggttaaagcagccactggagaagaggtgtcagcggaggaccttggaggtgctgatcttca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51927916 ggttaaagcagccactggagaagaggtgtcagcggaggaccttggaggtgctgatcttca 51927975
Query: 961 ctgcagg 967
|||||||
Sbjct: 51927976 ctgcagg 51927982
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,721,080
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 14
Length of query: 1507
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1486
Effective length of database: 2,808,413,156
Effective search space: 4173301949816
Effective search space used: 4173301949816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)