Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus]. 592 e-172
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 167 2e-41
Alignment gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus]. 149 6e-36
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 143 3e-34
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 139 6e-33
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 139 6e-33
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 139 6e-33
Alignment gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus]. 105 6e-23
Alignment gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru... 105 7e-23
Alignment gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur... 98 2e-20
>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
Length = 535
Score = 592 bits (1527), Expect(2) = e-172
Identities = 309/321 (96%), Positives = 310/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV SLIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+F GVE
Sbjct: 301 EQLFGAAGVMAIEHADFVGVE 321
Score = 33.5 bits (75), Expect(2) = e-172
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 167 bits (422), Expect = 2e-41
Identities = 111/313 (35%), Positives = 180/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F L V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKVIGINGDFFANLVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +I+V+K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F AG MA+
Sbjct: 296 CLKYFVEAGAMAV 308
>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
Length = 543
Score = 149 bits (375), Expect = 6e-36
Identities = 103/302 (34%), Positives = 157/302 (51%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 183 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+E+I G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 143 bits (360), Expect = 3e-34
Identities = 89/285 (31%), Positives = 160/285 (56%), Gaps = 5/285 (1%)
Frame = +1
Query: 151 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 330
D ++ R S+ A A+ D ++++LGPKGMDK++ D + +TNDGATILK + V
Sbjct: 29 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVT--ITNDGATILKQMQV 86
Query: 331 DNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKA 510
+PAA++LV++S+ QD E GDGTTSV + L+ K IHP I +++A +
Sbjct: 87 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 146
Query: 511 ARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----K 675
+ L + + +E+ R+ L+N A T+L+SK+++ + + ++V+AV+++
Sbjct: 147 GIEILTDMS---RPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATA 203
Query: 676 GSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 855
S +L I ++KKLGG++ D L EG +L +K+ + R+E AKI + + K +
Sbjct: 204 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 263
Query: 856 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI 990
+++ V ++ + E+ + V++I K G N + ++ I
Sbjct: 264 -DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSI 307
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 139 bits (349), Expect = 6e-33
Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 36 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 93
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A + L+
Sbjct: 94 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 152
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 153 DSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 212
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 213 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 271
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E + +I + G N I
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAI 301
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 139 bits (349), Expect = 6e-33
Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 36 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 93
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A + L+
Sbjct: 94 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 152
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 153 DSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 212
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 213 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 271
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E + +I + G N I
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAI 301
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 139 bits (349), Expect = 6e-33
Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 36 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 93
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A + L+
Sbjct: 94 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 152
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 153 DSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 212
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 213 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 271
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E + +I + G N I
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAI 301
>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
Length = 531
Score = 105 bits (263), Expect = 6e-23
Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 6/285 (2%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A V A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A + A Q L V D R+ L+++A T+L +K+ D T+ V+
Sbjct: 119 ITEGFEAAKEKALQFLEQVKVSKEMD----RETLIDVARTSLRTKVHAELADVLTEAVVD 174
Query: 658 AVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIENAKILI 819
++L +K +L + +++ S D+ L G +LD G P KR+E+A IL
Sbjct: 175 SILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILT 232
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILK 954
N ++ +K ++ S S + ++ AE++ ++++V++I++
Sbjct: 233 CNVSLEYEKTEV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
Length = 545
Score = 105 bits (262), Expect = 7e-23
Identities = 77/313 (24%), Positives = 153/313 (48%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + E + + A I D++++ LGPK M K+LL +++TNDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGIVMTNDG 63
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + +++HP +I
Sbjct: 64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+ +R+A L ++ + R ++NI +++++K+++ +A++AV
Sbjct: 124 SAYRKALDDMISTLKKISIPVDTSN---RDTMLNIINSSITTKVISRWSSLACNIALDAV 180
Query: 664 LRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR-IENAKILI 819
++ N IKK GG + DS + G +++K + + +R I+N +I++
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
++ ++ K + + + + I E+E +++ E I++ + I + I +
Sbjct: 241 LDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDL 299
Query: 1000 PEQLFGAAGVMAI 1038
+ A + AI
Sbjct: 300 AQHYLMRANITAI 312
>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
Length = 531
Score = 97.8 bits (242), Expect = 2e-20
Identities = 72/289 (24%), Positives = 146/289 (50%), Gaps = 11/289 (3%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A + + A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAIKAINSKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDL-----MNIAGTTLSSKLLTHHKDHFT 642
I G+ A A + L ++VK ++++ +++A T+L +K+ D T
Sbjct: 119 IAEGFEIAKIKALEVL---------EQVKIKKEMKREIHLDVARTSLQTKVHPQLADVLT 169
Query: 643 KLAVEAVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIEN 804
+ V++VL ++ +L + +++ S D+ L +G +LD G P KR+++
Sbjct: 170 EAVVDSVLAIRRPNYPIDLFMVEIMEMKHKSETDTKLIKGLVLDH--GARHPDMKKRVDD 227
Query: 805 AKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERIL 951
A IL N ++ +K ++ S + + ++ AE++ ++++V++I+
Sbjct: 228 AFILTCNVSLEYEKTEV-SSGFFYKTAEEKEKLVKAERKFIEDRVQKII 275
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,561,429
Number of extensions: 892495
Number of successful extensions: 2445
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2417
Number of HSP's successfully gapped: 18
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531675.2| PREDICTED: similar to chaperonin containing TCP... 591 e-172
Alignment gi|XP_861657.1| PREDICTED: similar to chaperonin containing TCP... 591 e-172
Alignment gi|XP_862776.1| PREDICTED: similar to T-complex protein 1, alph... 166 5e-41
Alignment gi|XP_862725.1| PREDICTED: similar to T-complex protein 1, alph... 164 1e-40
Alignment gi|XP_862705.1| PREDICTED: similar to T-complex protein 1, alph... 164 1e-40
Alignment gi|XP_862675.1| PREDICTED: similar to T-complex protein 1, alph... 164 1e-40
Alignment gi|XP_541181.1| PREDICTED: similar to T-complex protein 1, alph... 164 1e-40
Alignment gi|XP_849934.1| PREDICTED: similar to chaperonin containing TCP... 145 9e-38
Alignment gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ... 149 4e-36
Alignment gi|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta ... 149 4e-36
>ref|XP_531675.2| PREDICTED: similar to chaperonin containing TCP1, subunit 2 isoform 1
[Canis familiaris].
Length = 535
Score = 591 bits (1524), Expect(2) = e-172
Identities = 308/321 (95%), Positives = 311/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV +LIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAETLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
+LAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 QLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+FAGVE
Sbjct: 301 EQLFGAAGVMAIEHADFAGVE 321
Score = 33.5 bits (75), Expect(2) = e-172
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|XP_861657.1| PREDICTED: similar to chaperonin containing TCP1, subunit 2 isoform 2
[Canis familiaris].
Length = 497
Score = 591 bits (1524), Expect(2) = e-172
Identities = 308/321 (95%), Positives = 311/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV +LIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAETLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
+LAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 QLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+FAGVE
Sbjct: 301 EQLFGAAGVMAIEHADFAGVE 321
Score = 33.5 bits (75), Expect(2) = e-172
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|XP_862776.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 8 [Canis familiaris].
Length = 556
Score = 166 bits (419), Expect = 5e-41
Identities = 107/313 (34%), Positives = 180/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLD-KKIGVNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +K + PKRI NAKI
Sbjct: 177 LAVKYTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCEKCNASMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|XP_862725.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 6 [Canis familiaris].
Length = 456
Score = 164 bits (415), Expect = 1e-40
Identities = 107/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAVKYTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|XP_862705.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 5 [Canis familiaris].
Length = 433
Score = 164 bits (415), Expect = 1e-40
Identities = 107/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAVKYTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|XP_862675.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 4 [Canis familiaris].
Length = 558
Score = 164 bits (415), Expect = 1e-40
Identities = 107/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAVKYTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|XP_541181.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 1 [Canis familiaris].
Length = 556
Score = 164 bits (415), Expect = 1e-40
Identities = 107/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAVKYTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|XP_849934.1| PREDICTED: similar to chaperonin containing TCP1, subunit 2 [Canis
familiaris].
Length = 272
Score = 145 bits (367), Expect(2) = 9e-38
Identities = 72/78 (92%), Positives = 75/78 (96%)
Frame = +1
Query: 832 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQL 1011
MDT KIKIFGSRVRVDSTAKV EIE+AEKEKMK+KVERILKHGINCFINRQLIYNYPEQL
Sbjct: 1 MDTAKIKIFGSRVRVDSTAKVGEIEYAEKEKMKKKVERILKHGINCFINRQLIYNYPEQL 60
Query: 1012 FGAAGVMAIEHANFAGVE 1065
FGAAGVMAIEH +FAGVE
Sbjct: 61 FGAAGVMAIEHTDFAGVE 78
Score = 30.4 bits (67), Expect(2) = 9e-38
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2
Query: 1070 LALVPGGEIASTFDH 1114
LALV GGEIASTFDH
Sbjct: 80 LALVIGGEIASTFDH 94
>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 1
[Canis familiaris].
Length = 543
Score = 149 bits (377), Expect = 4e-36
Identities = 104/302 (34%), Positives = 157/302 (51%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 183 VIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
>ref|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 10
[Canis familiaris].
Length = 547
Score = 149 bits (377), Expect = 4e-36
Identities = 104/302 (34%), Positives = 157/302 (51%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 183 VIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,188,894
Number of extensions: 917037
Number of successful extensions: 2790
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 2710
Number of HSP's successfully gapped: 50
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 583 e-170
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 166 4e-41
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 152 5e-37
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 140 2e-33
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 134 1e-31
Alignment gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus]. 106 3e-23
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 103 3e-22
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 103 3e-22
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 103 3e-22
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 82 6e-16
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 583 bits (1502), Expect(2) = e-170
Identities = 303/321 (94%), Positives = 309/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDA+
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAA 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV SLIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTII+GWREATKAAR+ALL+SAVDHGSDE +F QDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIISGWREATKAAREALLSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+FAGVE
Sbjct: 301 EQLFGAAGVMAIEHADFAGVE 321
Score = 33.5 bits (75), Expect(2) = e-170
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 166 bits (419), Expect = 4e-41
Identities = 108/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+ GP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + +N + +DE+ R L+N A T++SSK++ + D+F + V+AV
Sbjct: 119 SGYRLACKEAVR-YINENLIINTDELG-RDCLINAAKTSMSSKIIGINGDYFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAVKYTDARGQPRYPVNSVNILKAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F AG MA+
Sbjct: 296 YLKYFVEAGAMAV 308
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 152 bits (384), Expect = 5e-37
Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L +S L G K QPK+ +N KI + N
Sbjct: 183 VMMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+E+I + G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 140 bits (353), Expect = 2e-33
Identities = 89/285 (31%), Positives = 159/285 (55%), Gaps = 5/285 (1%)
Frame = +1
Query: 151 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 330
D ++ R S+ A A+ D ++++LGPKGMDK++ D + +TNDGATILK + V
Sbjct: 26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVT--ITNDGATILKQMQV 83
Query: 331 DNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKA 510
+PAA++LV++S+ QD E GDGTTSV + L+ K IHP I +++A +
Sbjct: 84 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143
Query: 511 ARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----K 675
+ L + + ++ R+ L+N A T+L+SK+++ + + ++V AV+++
Sbjct: 144 GLEILTDMS---RPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATA 200
Query: 676 GSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 855
S +L I ++KKLGG++ D L EG +L +K+ + R+E AKI + + K +
Sbjct: 201 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 260
Query: 856 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI 990
+++ V A++ + E+ + V++I K G N + ++ I
Sbjct: 261 -DNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSI 304
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 134 bits (338), Expect = 1e-31
Identities = 90/270 (33%), Positives = 147/270 (54%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + ++++LGP G+DK+++ +D + +TNDGATIL + VD+ AK++V+
Sbjct: 36 SHIMAAKAVANTMRTSLGPNGLDKMMVD--KDGDVTITNDGATILSMMDVDHQIAKLMVE 93
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A Q L+
Sbjct: 94 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQH-LDKIS 152
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
D ++ + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 153 DKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFELIKVE 212
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++ +AKI I + K K ++ V S
Sbjct: 213 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKT-KHKLDVMSV 271
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E +++I + G N I
Sbjct: 272 EDYKALQKYEKEKFEEMIKQIKETGANLAI 301
>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
Length = 531
Score = 106 bits (265), Expect = 3e-23
Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 6/285 (2%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A V A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A + A Q L V D R+ L+++A T+L +K+ D T+ V+
Sbjct: 119 ITEGFEAAKEKALQFLEQVKVSKEMD----RETLIDVARTSLRTKVHAELADVLTEAVVD 174
Query: 658 AVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIENAKILI 819
++L ++ +L + +++ S D+ L G +LD G P KR+ENA IL
Sbjct: 175 SILAIRKKDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVENAYILT 232
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILK 954
N ++ +K ++ S S + ++ AE++ ++++V++I++
Sbjct: 233 CNVSLEYEKTEV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 103 bits (256), Expect = 3e-22
Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 10/315 (3%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + E + + A I D++++ LGPK M K+LL +++TNDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGIVMTNDG 63
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + +++HP +I
Sbjct: 64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123
Query: 484 AGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
+ +R A L +++ VD V R+ +++I +++++K+++ +A++
Sbjct: 124 SAYRMALDDMISTLKKISTPVD-----VNNREMMLSIINSSITTKVISRWSSLACNIALD 178
Query: 658 AVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR-IENAKI 813
AV ++ N IKK GG + DS + G +++K + + +R I+N +I
Sbjct: 179 AVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRI 238
Query: 814 LIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIY 993
++ ++ ++ K + + + + I E+E + + E I++ + I + I
Sbjct: 239 VLLDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGIS 297
Query: 994 NYPEQLFGAAGVMAI 1038
+ + A V AI
Sbjct: 298 DLAQHYLMRANVTAI 312
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 103 bits (256), Expect = 3e-22
Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 10/315 (3%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + E + + A I D++++ LGPK M K+LL +++TNDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGIVMTNDG 63
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + +++HP +I
Sbjct: 64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123
Query: 484 AGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
+ +R A L +++ VD V R+ +++I +++++K+++ +A++
Sbjct: 124 SAYRMALDDMISTLKKISTPVD-----VNNREMMLSIINSSITTKVISRWSSLACNIALD 178
Query: 658 AVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR-IENAKI 813
AV ++ N IKK GG + DS + G +++K + + +R I+N +I
Sbjct: 179 AVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRI 238
Query: 814 LIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIY 993
++ ++ ++ K + + + + I E+E + + E I++ + I + I
Sbjct: 239 VLLDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGIS 297
Query: 994 NYPEQLFGAAGVMAI 1038
+ + A V AI
Sbjct: 298 DLAQHYLMRANVTAI 312
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 103 bits (256), Expect = 3e-22
Identities = 76/289 (26%), Positives = 144/289 (49%), Gaps = 11/289 (3%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A + I GA+ R++ A + A + D+++ TLGPKG K+L+S D L T
Sbjct: 1 MAAIKIANPGAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKF-----RQDLMNIAGTTLSSKLLTHHKDHFT 642
I G+ A A + L DE+K R+ L+++A T+L +K+ D T
Sbjct: 119 ITEGFDVAKTKALEVL---------DEIKVQKEMKREILLDVARTSLQTKVHAELADILT 169
Query: 643 KLAVEAVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIEN 804
+ V++VL ++ G +L + +++ S D+ L G +LD G P K++ +
Sbjct: 170 EAVVDSVLAIRRPGVPIDLFMVEIVEMRHKSETDTQLIRGLVLDH--GARHPRMRKQVRD 227
Query: 805 AKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERIL 951
A IL N ++ +K ++ S + + ++ AE++ ++++V++I+
Sbjct: 228 AYILTCNVSLEYEKTEV-SSGFFYKTVEEKEKLVKAERKFIEDRVQKII 275
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 82.4 bits (202), Expect = 6e-16
Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 3/260 (1%)
Frame = +1
Query: 205 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 384
+ ++ GP GM+K++++ R L VTND ATIL+ + V +PAAK++V S +Q+ E
Sbjct: 39 LAQTTRTAYGPNGMNKMVIN--RLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 96
Query: 385 VGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVK 564
VGDGT V V L+ + +I+G+ A K A + +L V + ++
Sbjct: 97 VGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHE-ILPELVCCSAKNLR 155
Query: 565 FRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEAIHVIKKLGGSLAD 735
++ ++ T++ SK + KL +A + + G+ N++ I V K LG +
Sbjct: 156 DVDEVSSLLRTSIMSKQY-GSETFLAKLIAQACVSIFPDSGNFNVDNIRVCKILGSGIYS 214
Query: 736 SYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAE 915
S + G + KK +++AKI + + D + G+ V + + ++ E
Sbjct: 215 SSVLHGMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKTAEELMNFSKGE 272
Query: 916 KEKMKEKVERILKHGINCFI 975
+ M +V+ I G N +
Sbjct: 273 ENLMDAQVKAIAGTGANVIV 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,962,820
Number of extensions: 776596
Number of successful extensions: 2037
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2022
Number of HSP's successfully gapped: 13
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa]. 594 e-173
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 165 5e-41
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 150 9e-37
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 139 4e-33
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 127 1e-29
Alignment gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-... 106 3e-23
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 104 1e-22
Alignment gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma... 86 4e-17
Alignment gi|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-... 86 4e-17
Alignment gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta... 79 6e-15
>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
Length = 535
Score = 594 bits (1531), Expect(2) = e-173
Identities = 310/321 (96%), Positives = 311/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV SLIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+FAGVE
Sbjct: 301 EQLFGAAGVMAIEHADFAGVE 321
Score = 33.5 bits (75), Expect(2) = e-173
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 165 bits (417), Expect = 5e-41
Identities = 108/313 (34%), Positives = 179/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D E R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + + + + + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +I+++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F G MA+
Sbjct: 296 CLKYFVETGAMAV 308
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 150 bits (380), Expect = 9e-37
Identities = 104/302 (34%), Positives = 157/302 (51%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 183 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 139 bits (349), Expect = 4e-33
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 5/285 (1%)
Frame = +1
Query: 151 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 330
D ++ R S+ A A+ D ++++LGPKGMDK++ D + +TNDGATILK + V
Sbjct: 26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVT--ITNDGATILKQMQV 83
Query: 331 DNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKA 510
+PAA++LV++S+ QD E GDGTTSV + L+ K IHP I +++A +
Sbjct: 84 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143
Query: 511 ARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----K 675
+ L + + E+ R L+N A T+L+SK+++ + + ++V AV+++
Sbjct: 144 GIEILTDMS---RPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATA 200
Query: 676 GSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 855
S +L I ++KKLGG++ D L EG +L +K+ + R+E AKI + + K +
Sbjct: 201 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 260
Query: 856 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI 990
+++ V ++ + E+ + V++I K G N + ++ I
Sbjct: 261 -DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSI 304
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus
scrofa].
Length = 487
Score = 127 bits (319), Expect = 1e-29
Identities = 89/270 (32%), Positives = 139/270 (51%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 1 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 58
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A + L
Sbjct: 59 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHL----- 113
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
TTL SK++ ++AV AVL + + + E I V
Sbjct: 114 ---------------DXXTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 158
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 159 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 217
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E + +I + G N I
Sbjct: 218 EDYKALQKYEKEKFEEMIRQIKETGANLAI 247
>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
scrofa].
Length = 531
Score = 106 bits (264), Expect = 3e-23
Identities = 79/285 (27%), Positives = 143/285 (50%), Gaps = 6/285 (2%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A V A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A + A Q L V D R+ L+++A T+L +K+ D T+ V+
Sbjct: 119 ITEGFEAAKEKALQFLEQVKVSKEMD----RETLIDVARTSLRTKVHAELADVLTEAVVD 174
Query: 658 AVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIENAKILI 819
+VL +K +L + +++ S D+ L G +LD G P KR+E+A IL
Sbjct: 175 SVLAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILT 232
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILK 954
N ++ +K ++ S S + ++ AE++ ++++V++I++
Sbjct: 233 CNVSLEYEKTEV-NSGFFYKSAEEREKLVRAERKFIEDRVKKIVE 276
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 104 bits (259), Expect = 1e-22
Identities = 79/315 (25%), Positives = 155/315 (49%), Gaps = 10/315 (3%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + E + + A I D++++ LGPK M K+LL +++TNDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGIVMTNDG 63
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + +++HP +I
Sbjct: 64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123
Query: 484 AGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
+ +R+A L +++ VD + R ++NI +++++K+++ +A++
Sbjct: 124 SAYRKALDDMISTLKKISTPVDTNN-----RDMMLNIINSSITTKVISRWSSLACNIALD 178
Query: 658 AVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR-IENAKI 813
AV ++ N IKK GG + DS + G +++K + + +R I+N +I
Sbjct: 179 AVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRI 238
Query: 814 LIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIY 993
++ ++ ++ K + + + + I E+E +++ E I+ + I + I
Sbjct: 239 VLLDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGIS 297
Query: 994 NYPEQLFGAAGVMAI 1038
+ + A + AI
Sbjct: 298 DLAQHYLMRANITAI 312
>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
Length = 500
Score = 85.9 bits (211), Expect = 4e-17
Identities = 65/262 (24%), Positives = 133/262 (50%), Gaps = 10/262 (3%)
Frame = +1
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
+++TNDG IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + ++
Sbjct: 12 IVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQ 71
Query: 463 IHPQTIIAGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDH 636
+HP +I+ +R+A L +++ VD + R ++NI +++++K+++
Sbjct: 72 MHPTVVISAYRKALDDMISTLKKISTPVDTNN-----RDMMLNIINSSITTKVISRWSSL 126
Query: 637 FTKLAVEAVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR 795
+A++AV ++ N IKK GG + DS + G +++K + + +R
Sbjct: 127 ACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRR 186
Query: 796 -IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCF 972
I+N +I++ ++ ++ K + + + + I E+E +++ E I+ +
Sbjct: 187 YIKNPRIVLLDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVV 245
Query: 973 INRQLIYNYPEQLFGAAGVMAI 1038
I + I + + A + AI
Sbjct: 246 ITEKGISDLAQHYLMRANITAI 267
>ref|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 2 [Sus
scrofa].
Length = 494
Score = 85.9 bits (211), Expect = 4e-17
Identities = 56/186 (30%), Positives = 93/186 (50%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A V A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A + A Q L V D R+ L+++A T+L +K+ D T+ V+
Sbjct: 119 ITEGFEAAKEKALQFLEQVKVSKEMD----RETLIDVARTSLRTKVHAELADVLTEAVVD 174
Query: 658 AVLRLK 675
+VL +K
Sbjct: 175 SVLAIK 180
>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
scrofa].
Length = 529
Score = 78.6 bits (192), Expect = 6e-15
Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 3/285 (1%)
Frame = +1
Query: 205 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 384
+ ++ GP GM+K++++ L VTND ATIL+ + V +PAAK++V S +Q+ E
Sbjct: 20 LAQTTRTAYGPNGMNKMVINHLE--KLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 77
Query: 385 VGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVK 564
VGDGT V V L+ + +I G+ A + A + +L V + ++
Sbjct: 78 VGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHE-ILPDLVCCSAKNLR 136
Query: 565 FRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEAIHVIKKLGGSLAD 735
++ ++ T++ SK ++ KL +A + + G N++ I V K LG +
Sbjct: 137 DVDEVSSLLHTSVMSKQY-GNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHS 195
Query: 736 SYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAE 915
S + G + KK +++AKI + + D + G+ V + + ++ E
Sbjct: 196 SSVLHGMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKTAEELMNFSKGE 253
Query: 916 KEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHAN 1050
+ M+ +V+ I G N + G MA+ +AN
Sbjct: 254 ENLMEAQVKAIADTGANVVVTG-----------GKVADMALHYAN 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,110,968
Number of extensions: 567320
Number of successful extensions: 1564
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 16
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 589 e-171
Alignment gi|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [... 504 e-146
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 168 9e-42
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 153 3e-37
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 141 1e-33
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 140 3e-33
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 129 6e-30
Alignment gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom... 106 3e-23
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 104 1e-22
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 102 5e-22
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 589 bits (1519), Expect(2) = e-171
Identities = 306/321 (95%), Positives = 311/321 (96%)
Frame = +1
Query: 103 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 282
MASLSLAPVNIFKAGADEERAETARL+SFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS
Sbjct: 1 MASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAS 60
Query: 283 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKK 462
LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV SLIAKK
Sbjct: 61 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKK 120
Query: 463 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 642
IHPQTIIAGWREATKAAR+ALL+SAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT
Sbjct: 121 IHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 180
Query: 643 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 822
KLAVEAVLRLKGSGNLEAIH+IKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA
Sbjct: 181 KLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIA 240
Query: 823 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 1002
NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP
Sbjct: 241 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYP 300
Query: 1003 EQLFGAAGVMAIEHANFAGVE 1065
EQLFGAAGVMAIEHA+FAGVE
Sbjct: 301 EQLFGAAGVMAIEHADFAGVE 321
Score = 33.5 bits (75), Expect(2) = e-171
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 321 ERLALVTGGEIASTFDH 337
>ref|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [Homo sapiens].
Length = 488
Score = 504 bits (1297), Expect(2) = e-146
Identities = 260/274 (94%), Positives = 264/274 (96%)
Frame = +1
Query: 244 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXX 423
MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTV
Sbjct: 1 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAA 60
Query: 424 XXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTL 603
SLIAKKIHPQTIIAGWREATKAAR+ALL+SAVDHGSDEVKFRQDLMNIAGTTL
Sbjct: 61 ELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTL 120
Query: 604 SSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN 783
SSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIH+IKKLGGSLADSYLDEGFLLDKKIGVN
Sbjct: 121 SSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVN 180
Query: 784 QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI 963
QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI
Sbjct: 181 QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI 240
Query: 964 NCFINRQLIYNYPEQLFGAAGVMAIEHANFAGVE 1065
NCFINRQLIYNYPEQLFGAAGVMAIEHA+FAGVE
Sbjct: 241 NCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVE 274
Score = 33.5 bits (75), Expect(2) = e-146
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 1064 KRLALVPGGEIASTFDH 1114
+RLALV GGEIASTFDH
Sbjct: 274 ERLALVTGGEIASTFDH 290
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 168 bits (425), Expect = 9e-42
Identities = 110/313 (35%), Positives = 180/313 (57%), Gaps = 8/313 (2%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
P+++F D ET R + + A +I ++VKS+LGP G+DK+L+ D + +TNDG
Sbjct: 4 PLSVF---GDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 58
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V++PAAKVL +++ +QD EVGDGTTSV + L+ +KIHP ++I
Sbjct: 59 ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 118
Query: 484 AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 663
+G+R A K A + +N + +DE+ R L+N A T++SSK++ + D F + V+AV
Sbjct: 119 SGYRLACKEAVR-YINENLIVNTDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 176
Query: 664 LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 819
L +K + + +++++K G S +S L G+ L+ +G PKRI NAKI
Sbjct: 177 LAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIAC 236
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 999
+ + K+K+ G +V + K+ +I E + KE++++IL G N + I +
Sbjct: 237 LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 295
Query: 1000 PEQLFGAAGVMAI 1038
+ F AG MA+
Sbjct: 296 CLKYFVEAGAMAV 308
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 153 bits (386), Expect = 3e-37
Identities = 105/302 (34%), Positives = 159/302 (52%), Gaps = 5/302 (1%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 5 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 62
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+ + + +HPQ II
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 484 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 660
+R AT+ A + AV +D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 661 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANT 828
V+ L L+ I + K GG+L DS L G K QPK+ N KI + N
Sbjct: 183 VMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNV 242
Query: 829 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 1008
++ K + + +RV + I AE + +K+E+I G +++ I + Q
Sbjct: 243 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQ 301
Query: 1009 LF 1014
F
Sbjct: 302 YF 303
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 141 bits (355), Expect = 1e-33
Identities = 90/285 (31%), Positives = 159/285 (55%), Gaps = 5/285 (1%)
Frame = +1
Query: 151 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 330
D ++ R S+ A A+ D ++++LGPKGMDK++ D + +TNDGATILK + V
Sbjct: 26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVT--ITNDGATILKQMQV 83
Query: 331 DNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKA 510
+PAA++LV++S+ QD E GDGTTSV + L+ K IHP I +++A +
Sbjct: 84 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143
Query: 511 ARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----K 675
+ L + + E+ R+ L+N A T+L+SK+++ + + ++V AV+++
Sbjct: 144 GIEILTDMS---RPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATA 200
Query: 676 GSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 855
S +L I ++KKLGG++ D L EG +L +K+ + R+E AKI + + K +
Sbjct: 201 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGITRVEKAKIGLIQFCLSAPKTDM 260
Query: 856 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI 990
+++ V A++ + E+ + V++I K G N + ++ I
Sbjct: 261 -DNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSI 304
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 140 bits (352), Expect = 3e-33
Identities = 92/270 (34%), Positives = 149/270 (55%), Gaps = 5/270 (1%)
Frame = +1
Query: 181 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 360
S + A A+ + ++++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 36 SHIMAAKAVANTMRTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 93
Query: 361 MSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAV 540
+S+ QDDE+GDGTT V V L+ + IHP I G+ +A + A + L+
Sbjct: 94 LSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEH-LDKIS 152
Query: 541 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 708
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 153 DSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVE 212
Query: 709 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 885
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 213 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 271
Query: 886 AKVAEIEHAEKEKMKEKVERILKHGINCFI 975
++ EKEK +E +++I + G N I
Sbjct: 272 EDYKALQKYEKEKFEEMIQQIKETGANLAI 301
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 129 bits (323), Expect = 6e-30
Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 5/262 (1%)
Frame = +1
Query: 244 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXX 423
MDK+++ A+ ++NDGATILK + V +PAAK LVD+++ QD EVGDGTTSVT+
Sbjct: 1 MDKLIVDGRGKAT--ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAA 58
Query: 424 XXXXXXXSLIAKKIHPQTIIAGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTT 600
+ + +HPQ II +R AT+ A + AV +D+V+ R+ L A T
Sbjct: 59 EFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTA 118
Query: 601 LSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV 780
LSSKL++ K F K+ V+AV+ L L+ I + K GG+L DS L G K
Sbjct: 119 LSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSY 178
Query: 781 ----NQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERI 948
QPK+ N KI + N ++ K + + +RV + I AE + +K+E+I
Sbjct: 179 AGFEMQPKKYHNPKIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKI 237
Query: 949 LKHGINCFINRQLIYNYPEQLF 1014
G +++ I + Q F
Sbjct: 238 HHSGAKVVLSKLPIGDVATQYF 259
>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
Length = 531
Score = 106 bits (265), Expect = 3e-23
Identities = 79/285 (27%), Positives = 143/285 (50%), Gaps = 6/285 (2%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A V A+ RA+ A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A + A Q L V D R+ L+++A T+L +K+ D T+ V+
Sbjct: 119 ITEGFEAAKEKALQFLEEVKVSREMD----RETLIDVARTSLRTKVHAELADVLTEAVVD 174
Query: 658 AVLRLKGSG---NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIENAKILI 819
++L +K +L I +++ S D+ L G +LD G P KR+E+A IL
Sbjct: 175 SILAIKKQDEPIDLFMIEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILT 232
Query: 820 ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILK 954
N ++ +K ++ S S + ++ AE++ ++++V++I++
Sbjct: 233 CNVSLEYEKTEV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 104 bits (260), Expect = 1e-22
Identities = 80/287 (27%), Positives = 148/287 (51%), Gaps = 9/287 (3%)
Frame = +1
Query: 118 LAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTN 297
+A + + A+ RA A + A + D++++ LGPKG K+L+S D L T
Sbjct: 1 MAAIKAVNSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKL--TK 58
Query: 298 DGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQT 477
DG +L + + +P A ++ ++ QDD GDGTTS + I++ +HP+
Sbjct: 59 DGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRI 118
Query: 478 IIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
I G+ A A + L V + E+K R+ L+++A T+L +K+ D T++ V+
Sbjct: 119 IAEGFEAAKIKALEVLEEVKV---TKEMK-RKILLDVARTSLQTKVHAELADVLTEVVVD 174
Query: 658 AVLRLKGSG------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP---KRIENAK 810
+VL ++ G +E + + KLG D+ L +G +LD G P KR+E+A
Sbjct: 175 SVLAVRRPGYPIDLFMVEIMEMKHKLG---TDTKLIQGLVLDH--GARHPDMKKRVEDAF 229
Query: 811 ILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERIL 951
ILI N ++ +K ++ S + + ++ AE++ ++++V++I+
Sbjct: 230 ILICNVSLEYEKTEV-NSGFFYKTAEEKEKLVKAERKFIEDRVQKII 275
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 102 bits (255), Expect = 5e-22
Identities = 78/315 (24%), Positives = 154/315 (48%), Gaps = 10/315 (3%)
Frame = +1
Query: 124 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 303
PV + E + + A I D++++ LGPK M K+LL +++TNDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGIVMTNDG 63
Query: 304 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVXXXXXXXXXXSLIAKKIHPQTII 483
IL+ I V +PAAK ++++SR QD+EVGDGTTSV + + +++HP +I
Sbjct: 64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123
Query: 484 AGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVE 657
+ +R+A L ++ VD ++ ++NI +++++K ++ +A++
Sbjct: 124 SAYRKALDDMISTLKKISIPVDISDSDM-----MLNIINSSITTKAISRWSSLACNIALD 178
Query: 658 AVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR-IENAKI 813
AV ++ N IKK GG + DS + G +++K + + +R I+N +I
Sbjct: 179 AVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRI 238
Query: 814 LIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIY 993
++ ++ ++ K + + + + I E+E +++ E I++ + I + I
Sbjct: 239 VLLDSSLEYKKGE-SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGIS 297
Query: 994 NYPEQLFGAAGVMAI 1038
+ + A + AI
Sbjct: 298 DLAQHYLMRANITAI 312
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,595,423
Number of extensions: 911381
Number of successful extensions: 2431
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 21
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007651
(1116 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 406 e-110
>Sscrofa_Chr05
|| Length = 111506441
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 548 gatctgatgaagttaaattccgtcaagatttaatgaacattgcaggaacaacattatcct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36460684 gatctgatgaagttaaattccgtcaagatttaatgaacattgcaggaacaacattatcct 36460743
Query: 608 caaaacttctcactcaccacaaagaccacttcactaagttagctgtagaagctgttctca 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36460744 caaaacttctcactcaccacaaagaccacttcactaagttagctgtagaagctgttctca 36460803
Query: 668 gactgaaaggctctggtaatctggaggcaattcatgtcatcaagaagctcggaggaagtc 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36460804 gactgaaaggctctggtaatctggaggcaattcatgtcatcaagaagctcggaggaagtc 36460863
Query: 728 tggcagattcctatttagatgaagg 752
|||||||||||||||||||||||||
Sbjct: 36460864 tggcagattcctatttagatgaagg 36460888
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 851 agatatttggttccagggtgagagttgattctacagcaaaggttgcagaaatagaacatg 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36462634 agatatttggttccagggtgagagttgattctacagcaaaggttgcagaaatagaacatg 36462693
Query: 911 cagaaaaggaaaaaatgaaggagaaagttgaacgtattcttaagcatgggataaactgct 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36462694 cagaaaaggaaaaaatgaaggagaaagttgaacgtattcttaagcatgggataaactgct 36462753
Query: 971 ttattaacagg 981
|||||||||||
Sbjct: 36462754 ttattaacagg 36462764
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 435 ggaagcagaatctttaattgcaaaaaagattcatccacagaccattattgctggttggag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36459868 ggaagcagaatctttaattgcaaaaaagattcatccacagaccattattgctggttggag 36459927
Query: 495 agaagccaccaaggcagcaagacaggctctgttgaattctgcagttgaccatgg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36459928 agaagccaccaaggcagcaagacaggctctgttgaattctgcagttgaccatgg 36459981
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 246 ggataaaattctattaagcagtggacgagatgcttctcttatggtaaccaatgatggtgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36458958 ggataaaattctattaagcagtggacgagatgcttctcttatggtaaccaatgatggtgc 36459017
Query: 306 aactattctgaaaaacattggtgtggacaatccagctgctaaagttttagttg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36459018 aactattctgaaaaacattggtgtggacaatccagctgctaaagttttagttg 36459070
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 ccccctgcgggagagcgtgtggcgtcacttccggcctcttttccctctggaccggatcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36456794 ccccctgcgggagagcgtgtggcgtcacttccggcctcttttccctctggaccggatcgc 36456853
Query: 61 gagctgtgaggggtgcgcgtgtgtgccgaactcctcggaaccatgg 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36456854 gagctgtgaggggtgcgcgtgtgtgccgaactcctcggaaccatgg 36456899
Score = 184 bits (93), Expect = 7e-44
Identities = 106/109 (97%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 979 aggcagttaatttataattatcctgaacagctctttggtgctgctggtgttatggctatt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36464105 aggcagttaatttataattatcctgaacagctctttggtgctgctggtgttatggctatt 36464164
Query: 1039 gagcacgcaaattttgcaggtgtggaaacgccttgctcttgtcccaggt 1087
||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 36464165 gagcacgcagattttgcaggtgtgg-aacgccttgctcttgtcacaggt 36464212
Score = 163 bits (82), Expect = 3e-37
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 750 aggctttctgttggatnnnnnnnttggagtaaatcaaccaaagcgaattgaaaatgctaa 809
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 36462330 aggctttctgttggataaaaaaattggagtaaatcaaccaaagcgaattgaaaatgctaa 36462389
Query: 810 aattcttattgcaaatactggtatggatacagataaaataaag 852
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36462390 aattcttattgcaaatactggtatggatacagataaaataaag 36462432
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 358 gacatgtcaagggttcaagatgatgaagttggcgatggcactacctctgttactgttctt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36459672 gacatgtcaagggttcaagatgatgaagttggcgatggcactacctctgttactgttctt 36459731
Query: 418 gcagctgaattactaaggg 436
|||||||||||||||||||
Sbjct: 36459732 gcagctgaattactaaggg 36459750
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 105 ggcgtccctttccctggcacctgttaatatcttcaaggctggggctgatgaagagagagc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36457610 ggcgtccctttccctggcacctgttaatatcttcaaggctggggctgatgaagagagagc 36457669
Query: 165 agagacagctcgtctg 180
||||||||||||||||
Sbjct: 36457670 agagacagctcgtctg 36457685
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 180 gtcctcttttattggtgccatcgctattggagacttggtaaagagcacgttgggacccaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36457816 gtcctcttttattggtgccatcgctattggagacttggtaaagagcacgttgggacccaa 36457875
Query: 240 gggcatgg 247
||||||||
Sbjct: 36457876 gggcatgg 36457883
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1084 aggtggtgaaattgcatctacctttgaccaccc 1116
|||||||||||||||||||||||||||||||||
Sbjct: 36467268 aggtggtgaaattgcatctacctttgaccaccc 36467300
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,616,849
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 11
Length of query: 1116
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1095
Effective length of database: 2,808,413,156
Effective search space: 3075212405820
Effective search space used: 3075212405820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)