Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092544.1| F-box only protein 22 [Bos taurus]. 550 e-156
>ref|NP_001092544.1| F-box only protein 22 [Bos taurus].
Length = 404
Score = 550 bits (1416), Expect = e-156
Identities = 281/327 (85%), Positives = 298/327 (91%), Gaps = 1/327 (0%)
Frame = +3
Query: 96 MERVSGGCDRRGSSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRV 275
MERV GG D GSSSADPRSTFVLSNLAEVVERV TFLPAKALLRVAGVCRLWRECVRRV
Sbjct: 1 MERVGGGGDCCGSSSADPRSTFVLSNLAEVVERVFTFLPAKALLRVAGVCRLWRECVRRV 60
Query: 276 LRTHQSVTWISTGSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRG 455
LRTH++VTWIS S D L +HCLVRVV EELENVHILP+TVLYMADSE FI+LEECRG
Sbjct: 61 LRTHRNVTWISALSADPCHLAQHCLVRVVAEELENVHILPQTVLYMADSENFINLEECRG 120
Query: 456 HKRARKRTTMEAAFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLF 635
HKRARKRTTMEAAFALEKLFPKQCQ+LGIVTPGIVVTP+GS S+RPQEIEIGESGFALLF
Sbjct: 121 HKRARKRTTMEAAFALEKLFPKQCQVLGIVTPGIVVTPIGSRSNRPQEIEIGESGFALLF 180
Query: 636 PQIEGIKIQPFHFIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRV 815
PQIEGIKI+PFHFIKDPKKLTLER QLTEVGLLDNPELRVVLVFGYNCCK GASNYLQRV
Sbjct: 181 PQIEGIKIKPFHFIKDPKKLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQRV 240
Query: 816 VSTFSDMNVILAGGQVDNLASLTSEKNPLDIDATGVVGLSFSGHRIQSATVLLNEDVHDE 995
VSTFSDMNVILAGGQVDNLASLTSEK+PLDIDATGVVGLSFSGH++Q ATVLLNEDV+DE
Sbjct: 241 VSTFSDMNVILAGGQVDNLASLTSEKSPLDIDATGVVGLSFSGHQVQGATVLLNEDVNDE 300
Query: 996 KTAEAAMXRLKQPH-SEQTPLAHVCVC 1073
KTA+AAM RLK + EQ + + C
Sbjct: 301 KTADAAMQRLKAANIPEQNTIGFMFAC 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,596,511
Number of extensions: 1257014
Number of successful extensions: 4911
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4883
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544796.2| PREDICTED: similar to F-box only protein 22 iso... 522 e-148
>ref|XP_544796.2| PREDICTED: similar to F-box only protein 22 isoform a [Canis
familiaris].
Length = 401
Score = 522 bits (1344), Expect = e-148
Identities = 271/332 (81%), Positives = 288/332 (86%), Gaps = 2/332 (0%)
Frame = +3
Query: 96 MERVSGGCDRRGSSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRV 275
ME + GG RG ADP+ TFVL NLAEVVERVLTFLPAKALLR AGVCRLWREC RRV
Sbjct: 1 MELLGGG--GRGPC-ADPQGTFVLGNLAEVVERVLTFLPAKALLRAAGVCRLWRECARRV 57
Query: 276 LRTHQSVTWISTGSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRG 455
LR + VTW+S G AG ++HCLVR + EELENVHILP+TVLYMADSETFISLEECRG
Sbjct: 58 LRLQRGVTWVSAGLAGAGRRQDHCLVRALAEELENVHILPQTVLYMADSETFISLEECRG 117
Query: 456 HKRARKRTTMEAAFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLF 635
HKRARKRTTMEAAFALEKLFPKQC ILGIVTPGIVVTPMGS ++RPQEIEIGESGFALLF
Sbjct: 118 HKRARKRTTMEAAFALEKLFPKQCHILGIVTPGIVVTPMGSGNNRPQEIEIGESGFALLF 177
Query: 636 PQIEGIKIQPFHFIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRV 815
PQIEGIKIQPFHFIKDPK LTLER QLTEVGLLDNPELRVVLVFGYNCCK GA+NYLQRV
Sbjct: 178 PQIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGANNYLQRV 237
Query: 816 VSTFSDMNVILAGGQVDNLASLTSEKNPLDIDATGVVGLSFSGHRIQSATVLLNEDVHDE 995
VS FSDMNVILAGGQVDNLASLTS+K PLDIDATGVVGLSFSGHRIQSATVLLNEDV+DE
Sbjct: 238 VSAFSDMNVILAGGQVDNLASLTSDKQPLDIDATGVVGLSFSGHRIQSATVLLNEDVNDE 297
Query: 996 KTAEAAMXRLKQPH-SEQTPLAHVCVC-XRGF 1085
KT EAAM RLK + E+ + + C RGF
Sbjct: 298 KTVEAAMQRLKAANIPERNTIGFMFACVGRGF 329
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,437,582
Number of extensions: 1294336
Number of successful extensions: 5339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5301
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082325.2| F-box only protein 22 [Mus musculus]. 529 e-150
>ref|NP_082325.2| F-box only protein 22 [Mus musculus].
Length = 402
Score = 529 bits (1363), Expect = e-150
Identities = 273/320 (85%), Positives = 285/320 (89%), Gaps = 2/320 (0%)
Frame = +3
Query: 132 SSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRVLRTHQSVTWIST 311
SSS DPRST+VLSNLAEVVERV TFLPAKALLRVAGVCRLWRECVRRVLRTH+SVTWIS
Sbjct: 11 SSSTDPRSTYVLSNLAEVVERVFTFLPAKALLRVAGVCRLWRECVRRVLRTHRSVTWISA 70
Query: 312 GSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRGHKRARKRTTMEA 491
G +AG LE HCLVRVV E LENV ILP+TVLYMADSETFISLEECRGHKRARKRTTME
Sbjct: 71 GVAEAGHLEGHCLVRVVAEALENVRILPQTVLYMADSETFISLEECRGHKRARKRTTMET 130
Query: 492 AFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLFPQIEGIKIQPFH 671
A ALEKLFPKQCQ+LGIVTPGIVVTPMGS S+RPQEIEIGESGFALLFPQIEGIKIQPFH
Sbjct: 131 ACALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFH 190
Query: 672 FIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFSDMNVILA 851
FIKD K LTLER QLTEVGLLDNPELRVVLVFGYNCCK GASNYL RVVSTFSDMN+ILA
Sbjct: 191 FIKDSKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLHRVVSTFSDMNIILA 250
Query: 852 GGQVDNLASLTSEKNPLDIDATGVVGLSFSGHRIQSATVLLNEDVHDEKTAEAAMXRLKQ 1031
GGQVDNL+SLT EKNPLDIDATGVVGLSFSGHRIQSATVLL EDV+D KT EAAM RLK
Sbjct: 251 GGQVDNLSSLTCEKNPLDIDATGVVGLSFSGHRIQSATVLLTEDVNDAKTVEAAMQRLKA 310
Query: 1032 PH-SEQTPLAHVCVC-XRGF 1085
+ EQ + + C RGF
Sbjct: 311 ANIPEQNTIGFMFACVGRGF 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,945,941
Number of extensions: 1070612
Number of successful extensions: 4044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4021
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926641.3| PREDICTED: f-box only protein 22-like, parti... 198 5e-51
>ref|XP_001926641.3| PREDICTED: f-box only protein 22-like, partial [Sus scrofa].
Length = 205
Score = 198 bits (503), Expect = 5e-51
Identities = 105/122 (86%), Positives = 109/122 (89%), Gaps = 2/122 (1%)
Frame = +3
Query: 726 GLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFSDMNVILAGGQVDNLASLTSEKNPLD 905
GLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFSDMNVILAGGQVDNLASLTSEKNPLD
Sbjct: 12 GLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFSDMNVILAGGQVDNLASLTSEKNPLD 71
Query: 906 IDATGVVGLSFSGHRIQSATVLLNEDVHDEKTAEAAMXRLKQPH-SEQTPLAHVCVC-XR 1079
IDATGVVGLSFSGHRIQSATVLLNEDV+DEKTAEAAM RLK + EQ + + C R
Sbjct: 72 IDATGVVGLSFSGHRIQSATVLLNEDVNDEKTAEAAMQRLKAANIPEQNTIGFMFACVGR 131
Query: 1080 GF 1085
GF
Sbjct: 132 GF 133
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,073,420
Number of extensions: 807159
Number of successful extensions: 3289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3275
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_671717.1| F-box only protein 22 isoform a [Homo sapiens]. 538 e-153
Alignment gi|NP_036302.1| F-box only protein 22 isoform b [Homo sapiens]. 457 e-129
>ref|NP_671717.1| F-box only protein 22 isoform a [Homo sapiens].
Length = 403
Score = 538 bits (1385), Expect = e-153
Identities = 278/327 (85%), Positives = 290/327 (88%), Gaps = 2/327 (0%)
Frame = +3
Query: 111 GGCDRRGSSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRVLRTHQ 290
G C SS DPRSTFVLSNLAEVVERVLTFLPAKALLRVA VCRLWRECVRRVLRTH+
Sbjct: 5 GCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVLRTHR 64
Query: 291 SVTWISTGSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRGHKRAR 470
SVTWIS G +AG LE HCLVRVV EELENV ILP TVLYMADSETFISLEECRGHKRAR
Sbjct: 65 SVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRAR 124
Query: 471 KRTTMEAAFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLFPQIEG 650
KRT+ME A ALEKLFPKQCQ+LGIVTPGIVVTPMGS S+RPQEIEIGESGFALLFPQIEG
Sbjct: 125 KRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEG 184
Query: 651 IKIQPFHFIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFS 830
IKIQPFHFIKDPK LTLER QLTEVGLLDNPELRVVLVFGYNCCK GASNYLQ+VVSTFS
Sbjct: 185 IKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFS 244
Query: 831 DMNVILAGGQVDNLASLTSEKNPLDIDATGVVGLSFSGHRIQSATVLLNEDVHDEKTAEA 1010
DMN+ILAGGQVDNL+SLTSEKNPLDIDA+GVVGLSFSGHRIQSATVLLNEDV DEKTAEA
Sbjct: 245 DMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEKTAEA 304
Query: 1011 AMXRLKQPH-SEQTPLAHVCVC-XRGF 1085
AM RLK + E + + C RGF
Sbjct: 305 AMQRLKAANIPEHNTIGFMFACVGRGF 331
>ref|NP_036302.1| F-box only protein 22 isoform b [Homo sapiens].
Length = 276
Score = 457 bits (1177), Expect = e-129
Identities = 231/261 (88%), Positives = 239/261 (91%)
Frame = +3
Query: 111 GGCDRRGSSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRVLRTHQ 290
G C SS DPRSTFVLSNLAEVVERVLTFLPAKALLRVA VCRLWRECVRRVLRTH+
Sbjct: 5 GCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVLRTHR 64
Query: 291 SVTWISTGSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRGHKRAR 470
SVTWIS G +AG LE HCLVRVV EELENV ILP TVLYMADSETFISLEECRGHKRAR
Sbjct: 65 SVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRAR 124
Query: 471 KRTTMEAAFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLFPQIEG 650
KRT+ME A ALEKLFPKQCQ+LGIVTPGIVVTPMGS S+RPQEIEIGESGFALLFPQIEG
Sbjct: 125 KRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEG 184
Query: 651 IKIQPFHFIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFS 830
IKIQPFHFIKDPK LTLER QLTEVGLLDNPELRVVLVFGYNCCK GASNYLQ+VVSTFS
Sbjct: 185 IKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFS 244
Query: 831 DMNVILAGGQVDNLASLTSEK 893
DMN+ILAGGQVDNL+SLTSEK
Sbjct: 245 DMNIILAGGQVDNLSSLTSEK 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,716,570
Number of extensions: 1279606
Number of successful extensions: 4860
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4840
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007655
(1103 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 335 3e-89
gb|GL893884.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 278 6e-72
>Sscrofa_Chr07
|| Length = 134764511
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 725 aggtcttttagataaccctgagcttcgtgtggtccttgtgtttggctataactgctgtaa 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60872681 aggtcttttagataaccctgagcttcgtgtggtccttgtgtttggctataactgctgtaa 60872740
Query: 785 ggcaggagccagtaattatctgcagcgagtagtcagcactttcagtgatatgaatgtcat 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60872741 ggcaggagccagtaattatctgcagcgagtagtcagcactttcagtgatatgaatgtcat 60872800
Query: 845 cttggctggaggccaggtggacaacctggcatcgctgacctctgaaaag 893
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60872801 cttggctggaggccaggtggacaacctggcatcgctgacctctgaaaag 60872849
Score = 274 bits (138), Expect = 1e-70
Identities = 202/215 (93%), Gaps = 8/215 (3%)
Strand = Plus / Plus
Query: 893 gaaccctctggatattgatgccactggtgtggtgggactgtcatttagtggacaccgaat 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60875965 gaaccctctggatattgatgccactggtgtggtgggactgtcatttagtggacaccgaat 60876024
Query: 953 ccagagtgccacagtgcttctcaacgaggatgtccatgacgagaagactgctgaagctgc 1012
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 60876025 ccagagtgccacagtgcttctcaacgaggatgtcaatgacgagaagactgctgaggctgc 60876084
Query: 1013 gatgcancggctc-aagcagcc-acatt-cagagcag-acaccattggc-tcatgtttgc 1067
|||||| |||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct: 60876085 gatgcagcggctcaaagcagccaacattccagagcagaacaccattggcttcatgtttgc 60876144
Query: 1068 gtgtg-tgntaggggctt--catactacagagcca 1099
||||| || ||||||||| ||||||||||||||
Sbjct: 60876145 gtgtgttggtaggggctttcaatactacagagcca 60876179
>gb|GL893884.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2604
Length = 74059
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 238 gtgtgtgtcgcttatggagggagtgtgtgcgcagagtgttgcggacccatcagagtgtga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66162 gtgtgtgtcgcttatggagggagtgtgtgcgcagagtgttgcggacccatcagagtgtga 66221
Query: 298 cctggatctccacgggctcaggggatgctggcctcctggaggagcattgcttggtccgcg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66222 cctggatctccacgggctcaggggatgctggcctcctggaggagcattgcttggtccgcg 66281
Query: 358 tggtaaccgaagagcttgag 377
||||||||||||||||||||
Sbjct: 66282 tggtaaccgaagagcttgag 66301
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 ggaagtggcgcgcttgcttgcttgggcgagcttgatctggccctgcgccgtgctctccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65328 ggaagtggcgcgcttgcttgcttgggcgagcttgatctggccctgcgccgtgctctccga 65387
Query: 61 gctgctgtcctgctttccggtcgggttggtggggcatggagcgggtgagcggcggctg 118
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Sbjct: 65388 gctgctgtcctgctttccggtcgggttggtggggcatggagcgggtgagcggcggctg 65445
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,054,738
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 4
Length of query: 1103
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1082
Effective length of database: 2,808,413,156
Effective search space: 3038703034792
Effective search space used: 3038703034792
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)