Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193452.1| receptor-type tyrosine-protein phosphatase C... 224 1e-58
>ref|NP_001193452.1| receptor-type tyrosine-protein phosphatase C [Bos taurus].
Length = 1145
Score = 224 bits (570), Expect = 1e-58
Identities = 124/265 (46%), Positives = 159/265 (60%), Gaps = 6/265 (2%)
Frame = +3
Query: 147 MTMDLWLKLLAFGFAFLDTAMFVTGQATSP-TQDGPTTFTAPSSLTTSASIFSTAALSTI 323
MTM LWLKLLAFGFAFLD A+FV G +T P TQD TT A LTT++S+ ALSTI
Sbjct: 1 MTMYLWLKLLAFGFAFLDIAVFVAGNSTQPSTQDEQTTTPA---LTTASSVSPATALSTI 57
Query: 324 APTTPKPSCEEKYMDIPVNYTYTYNENSKTYSVMFASDVQCDSQDCAKMLQNLQECEHRT 503
APT KP CE KY + V Y++ N+N + + +C+ C K + L C+ +
Sbjct: 58 APT--KPPCENKYGGVSVKYSF--NDNKTFTATLDVKREECEPPGCEKEHRGLSACQTKN 113
Query: 504 VNLSHSSCVPPFKQILLETPPDPTKFKLEDCVQPEKANTSLCLRWEN-----SGNFSCDE 668
+++SH SC PPF+ +L E PPDP +F+L DCV+ E+ANTSLCL W+N +G F C+E
Sbjct: 114 ISMSHPSCEPPFEYVL-EVPPDPNQFQLVDCVEDEEANTSLCLHWQNKDFPDNGQFKCNE 172
Query: 669 GKLRYSFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAF 848
K+ Y F+C GG P + F V NL P+ YTCSSQV Y+ +
Sbjct: 173 NKIEYKFKCD-------------GGSP--SYNKDTFKVRNLKPRTNYTCSSQVLYDQQLL 217
Query: 849 ASGNKTIETDFGSPGTPQDIECSNK 923
S NKTIETDFG P PQ+ CS K
Sbjct: 218 ISQNKTIETDFGEPEAPQNFTCSAK 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,721,604
Number of extensions: 968610
Number of successful extensions: 3153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3120
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547374.2| PREDICTED: similar to protein tyrosine phosphat... 144 2e-34
>ref|XP_547374.2| PREDICTED: similar to protein tyrosine phosphatase, receptor type,
C isoform 3 precursor [Canis familiaris].
Length = 1251
Score = 144 bits (362), Expect = 2e-34
Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 1/243 (0%)
Frame = +3
Query: 198 DTAMFVTGQATSPTQDGPTTFTAPSSLTTSASIFSTAALSTIAPTTPKPSCEEKYMDIPV 377
++ + + + +P ++ P+ + + ++ + +A T P K +CE++Y +I V
Sbjct: 121 NSTVALLARTPAPGRNDPSGASRERTQQSAVPVGGSAVAETAGPPNNK-ACEDRYANITV 179
Query: 378 NYTYTYNENSKTYSVMFASDVQCDSQDCAKM-LQNLQECEHRTVNLSHSSCVPPFKQILL 554
Y Y NS + V CD C K + NL+ECE+ + +SHSSC P K + L
Sbjct: 180 EYYY--EPNSFVAKLNVNDTVNCDQ--CKKNEISNLKECENLNITISHSSCDSPNKTLTL 235
Query: 555 ETPPDPTKFKLEDCVQPEKANTSLCLRWENSGNFSCDEGKLRYSFQCADKNSTPIGRVFP 734
E PPD F LEDC Q EKANTS+C+R E NF+CD+ K++Y QC
Sbjct: 236 EVPPDRGNFDLEDCTQKEKANTSICVRVEEKKNFTCDKSKIKYRLQC------------- 282
Query: 735 YGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAFASGNKTIETDFGSPGTPQDIEC 914
GK I T +F E P+ Y+C V YN + + +K IETDFGSP P+++ C
Sbjct: 283 --GKNI--TGNMQFEWEGFVPETDYSCYLNVSYNGQLVLNLSKIIETDFGSPDPPKNLIC 338
Query: 915 SNK 923
S+K
Sbjct: 339 SSK 341
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDGPTTFTAPSS----LTTSASIFSTAALS- 317
M LWLKLLAFGFAFLDT +FVTG+ + G + PS+ L T + FS ++S
Sbjct: 1 MYLWLKLLAFGFAFLDTGVFVTGKEPTQAGSGLNSTEKPSAPGDPLPTRTTAFSLPSISE 60
Query: 318 -------TIAPTTPKPSCEEK 359
T P +P + E+
Sbjct: 61 RENYSSETTPPLSPDSTSTEE 81
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,347,714
Number of extensions: 993921
Number of successful extensions: 3227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3221
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035340.2| receptor-type tyrosine-protein phosphatase C is... 153 2e-37
Alignment gi|NP_001104786.1| receptor-type tyrosine-protein phosphatase C... 115 6e-26
>ref|NP_035340.2| receptor-type tyrosine-protein phosphatase C isoform 2 [Mus
musculus].
Length = 1152
Score = 153 bits (387), Expect = 2e-37
Identities = 92/266 (34%), Positives = 132/266 (49%), Gaps = 3/266 (1%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDGPTTFTAPSSLTTSASIFSTAALSTIAPT 332
M LWLKLLAFGFA LDT +FVTGQ +P+ T PS+L + ST ST T
Sbjct: 1 MGLWLKLLAFGFALLDTEVFVTGQTPTPSDGASLTTLTPSTL----GLASTDPPSTTIAT 56
Query: 333 TPKPSCEEKYMDIPVNYTYTYNENSKTYSVMFASDVQCDSQDCAKMLQNLQECEH-RTVN 509
T K +C + +I VNYTY + + + + +C ++DC +L NL+EC + ++
Sbjct: 57 TTKQTCAAMFGNITVNYTYESSNQTFKADLKDVQNAKCGNEDCENVLNNLEECSQIKNIS 116
Query: 510 LSHSSCVPPFKQILLETPPDPTKFKLEDCVQPEKANTSLCLRW--ENSGNFSCDEGKLRY 683
+S+ SC P I L PP KF L DC EKANTS+CL W +N C+ + Y
Sbjct: 117 VSNDSCAPA-TTIDLYVPPGTDKFSLHDCTPKEKANTSICLEWKTKNLDFRKCNSDNISY 175
Query: 684 SFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAFASGNK 863
C +N+T R + + ++NL Q YTC +++ Y
Sbjct: 176 VLHCEPENNTKCIRRNTF--------IPERCQLDNLRAQTNYTCVAEILYRGVKLVKNVI 227
Query: 864 TIETDFGSPGTPQDIECSNKVLRKDM 941
++TD G P TP+ C + RK +
Sbjct: 228 NVQTDLGIPETPKP-SCGDPAARKTL 252
>ref|NP_001104786.1| receptor-type tyrosine-protein phosphatase C isoform 1 [Mus
musculus].
Length = 1291
Score = 115 bits (288), Expect = 6e-26
Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 10/249 (4%)
Frame = +3
Query: 225 ATSPTQDG---PTTFTAPSSLTT----SASIFSTAALSTIAPTTPKPSCEEKYMDIPVNY 383
A SPT T ++ +SLTT + + ST ST TT K +C + +I VNY
Sbjct: 153 AASPTHTSNVSTTDISSGASLTTLTPSTLGLASTDPPSTTIATTTKQTCAAMFGNITVNY 212
Query: 384 TYTYNENSKTYSVMFASDVQCDSQDCAKMLQNLQECEH-RTVNLSHSSCVPPFKQILLET 560
TY + + + + +C ++DC +L NL+EC + +++S+ SC P I L
Sbjct: 213 TYESSNQTFKADLKDVQNAKCGNEDCENVLNNLEECSQIKNISVSNDSCAPA-TTIDLYV 271
Query: 561 PPDPTKFKLEDCVQPEKANTSLCLRW--ENSGNFSCDEGKLRYSFQCADKNSTPIGRVFP 734
PP KF L DC EKANTS+CL W +N C+ + Y C +N+T R
Sbjct: 272 PPGTDKFSLHDCTPKEKANTSICLEWKTKNLDFRKCNSDNISYVLHCEPENNTKCIRRNT 331
Query: 735 YGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAFASGNKTIETDFGSPGTPQDIEC 914
+ + ++NL Q YTC +++ Y ++TD G P TP+ C
Sbjct: 332 F--------IPERCQLDNLRAQTNYTCVAEILYRGVKLVKNVINVQTDLGIPETPKP-SC 382
Query: 915 SNKVLRKDM 941
+ RK +
Sbjct: 383 GDPAARKTL 391
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDGPTTFTA 266
M LWLKLLAFGFA LDT +FVTGQ +P+ + TT A
Sbjct: 1 MGLWLKLLAFGFALLDTEVFVTGQTPTPSDELSTTENA 38
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,291,473
Number of extensions: 861007
Number of successful extensions: 2989
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2970
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130644.2| PREDICTED: receptor-type tyrosine-protein ph... 478 e-138
>ref|XP_003130644.2| PREDICTED: receptor-type tyrosine-protein phosphatase C [Sus
scrofa].
Length = 1280
Score = 478 bits (1229), Expect(2) = e-138
Identities = 226/227 (99%), Positives = 226/227 (99%)
Frame = +3
Query: 243 DGPTTFTAPSSLTTSASIFSTAALSTIAPTTPKPSCEEKYMDIPVNYTYTYNENSKTYSV 422
DGPTTFTAPSSLTTSASIFSTAALSTIAPTTPKPSCEEKYMDIPVNYTYTYNENSKTYSV
Sbjct: 151 DGPTTFTAPSSLTTSASIFSTAALSTIAPTTPKPSCEEKYMDIPVNYTYTYNENSKTYSV 210
Query: 423 MFASDVQCDSQDCAKMLQNLQECEHRTVNLSHSSCVPPFKQILLETPPDPTKFKLEDCVQ 602
MFASDVQCDSQDCAKMLQNLQECEHRTVNLSHSSCVPPFKQILLETPPDPTKFKLEDCVQ
Sbjct: 211 MFASDVQCDSQDCAKMLQNLQECEHRTVNLSHSSCVPPFKQILLETPPDPTKFKLEDCVQ 270
Query: 603 PEKANTSLCLRWENSGNFSCDEGKLRYSFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGV 782
PEKANTSLCLRWENSGNFSCDEGKLRYSFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGV
Sbjct: 271 PEKANTSLCLRWENSGNFSCDEGKLRYSFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGV 330
Query: 783 ENLDPQHTYTCSSQVFYNYRAFASGNKTIETDFGSPGTPQDIECSNK 923
ENLDPQHTYTCSSQVFYNYRAFASGNKTIETDF SPGTPQDIECSNK
Sbjct: 331 ENLDPQHTYTCSSQVFYNYRAFASGNKTIETDFASPGTPQDIECSNK 377
Score = 33.5 bits (75), Expect(2) = e-138
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 923 SSQEGHVTWKPP-TVYS*VLLCIE 991
SSQEGHVTWKPP +V+ LC +
Sbjct: 378 SSQEGHVTWKPPNSVFHKFFLCYQ 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,140,677
Number of extensions: 611636
Number of successful extensions: 1950
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1947
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_563578.1| receptor-type tyrosine-protein phosphatase C is... 209 3e-54
Alignment gi|NP_002829.2| receptor-type tyrosine-protein phosphatase C is... 171 1e-42
Alignment gi|NP_563580.1| receptor-type tyrosine-protein phosphatase C is... 51 2e-06
>ref|NP_563578.1| receptor-type tyrosine-protein phosphatase C isoform 2 precursor
[Homo sapiens].
Length = 1143
Score = 209 bits (532), Expect = 3e-54
Identities = 110/260 (42%), Positives = 156/260 (60%), Gaps = 3/260 (1%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDGPTTFTAPSSLTTSASIFSTAALST--IA 326
M LWLKLLAFGFAFLDT +FVTGQ+ +P+ PT +S TT+ S +A +ST IA
Sbjct: 1 MYLWLKLLAFGFAFLDTEVFVTGQSPTPS---PTDAYLNASETTTLSPSGSAVISTTTIA 57
Query: 327 PTTPKPSCEEKYMDIPVNYTYTYNENSKTYSVMFASDVQCDSQDCAKM-LQNLQECEHRT 503
T KP+C+EKY +I V+Y Y T + +V+C + C + NL EC++ +
Sbjct: 58 TTPSKPTCDEKYANITVDYLYNKETKLFTAKLNVNENVECGNNTCTNNEVHNLTECKNAS 117
Query: 504 VNLSHSSCVPPFKQILLETPPDPTKFKLEDCVQPEKANTSLCLRWENSGNFSCDEGKLRY 683
V++SH+SC P K ++L+ PP KF+L DC Q EKA+T++CL+W+N F+CD + Y
Sbjct: 118 VSISHNSCTAPDKTLILDVPPGVEKFQLHDCTQVEKADTTICLKWKNIETFTCDTQNITY 177
Query: 684 SFQCADKNSTPIGRVFPYGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAFASGNK 863
FQC + +F KE +ENL+P+H Y C S++ YN F + +K
Sbjct: 178 RFQCGN-------MIF----------DNKEIKLENLEPEHEYKCDSEILYNNHKFTNASK 220
Query: 864 TIETDFGSPGTPQDIECSNK 923
I+TDFGSPG PQ I C ++
Sbjct: 221 IIKTDFGSPGEPQIIFCRSE 240
>ref|NP_002829.2| receptor-type tyrosine-protein phosphatase C isoform 1 precursor
[Homo sapiens].
Length = 1304
Score = 171 bits (432), Expect = 1e-42
Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 10/243 (4%)
Frame = +3
Query: 225 ATSPTQDGPTTFTAPSS-------LTTSASIFSTAALST--IAPTTPKPSCEEKYMDIPV 377
A P + TT TA +S TT+ S +A +ST IA T KP+C+EKY +I V
Sbjct: 176 AALPARTSNTTITANTSDAYLNASETTTLSPSGSAVISTTTIATTPSKPTCDEKYANITV 235
Query: 378 NYTYTYNENSKTYSVMFASDVQCDSQDCAKM-LQNLQECEHRTVNLSHSSCVPPFKQILL 554
+Y Y T + +V+C + C + NL EC++ +V++SH+SC P K ++L
Sbjct: 236 DYLYNKETKLFTAKLNVNENVECGNNTCTNNEVHNLTECKNASVSISHNSCTAPDKTLIL 295
Query: 555 ETPPDPTKFKLEDCVQPEKANTSLCLRWENSGNFSCDEGKLRYSFQCADKNSTPIGRVFP 734
+ PP KF+L DC Q EKA+T++CL+W+N F+CD + Y FQC + +F
Sbjct: 296 DVPPGVEKFQLHDCTQVEKADTTICLKWKNIETFTCDTQNITYRFQCGN-------MIF- 347
Query: 735 YGGKPIKPTKEKEFGVENLDPQHTYTCSSQVFYNYRAFASGNKTIETDFGSPGTPQDIEC 914
KE +ENL+P+H Y C S++ YN F + +K I+TDFGSPG PQ I C
Sbjct: 348 ---------DNKEIKLENLEPEHEYKCDSEILYNNHKFTNASKIIKTDFGSPGEPQIIFC 398
Query: 915 SNK 923
++
Sbjct: 399 RSE 401
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDGPTTFTAPS------SLTTSASIFSTAA 311
M LWLKLLAFGFAFLDT +FVTGQ+ +P+ G TT PS L T + FS A+
Sbjct: 1 MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGLTTAKMPSVPLSSDPLPTHTTAFSPAS 59
>ref|NP_563580.1| receptor-type tyrosine-protein phosphatase C isoform 4 [Homo
sapiens].
Length = 34
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +3
Query: 153 MDLWLKLLAFGFAFLDTAMFVTGQATSPTQDG 248
M LWLKLLAFGFAFLDT +FVTGQ+ +P+ G
Sbjct: 1 MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTG 32
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,941,155
Number of extensions: 1006739
Number of successful extensions: 3823
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3801
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007659
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 430 e-118
>Sscrofa_Chr10
|| Length = 79102373
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Minus
Query: 351 gaagagaaatacatggatatccctgtgaactacacttacacttacaatgagaacagtaaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26273372 gaagagaaatacatggatatccctgtgaactacacttacacttacaatgagaacagtaaa 26273313
Query: 411 acatacagtgtaatgtttgcatctgacgtccagtgtgactcccaagactgtgcaaagatg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26273312 acatacagtgtaatgtttgcatctgacgtccagtgtgactcccaagactgtgcaaagatg 26273253
Query: 471 ctccagaacctacaggaatgtgaacataggactgttaacctatcccatagttcatgtgtt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26273252 ctccagaacctacaggaatgtgaacataggactgttaacctatcccatagttcatgtgtt 26273193
Query: 531 cctccttttaaacaaatcctcttagagacacctccag 567
|||||||||||||||||||||||||||||||||||||
Sbjct: 26273192 cctccttttaaacaaatcctcttagagacacctccag 26273156
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 565 cagatcctacaaagtttaagttggaagactgtgtacagcctgaaaaagcaaatacttctc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26271816 cagatcctacaaagtttaagttggaagactgtgtacagcctgaaaaagcaaatacttctc 26271757
Query: 625 tttgtttgaggtgggagaacagtggcaatttttcttgtgatgaagggaaacttagataca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26271756 tttgtttgaggtgggagaacagtggcaatttttcttgtgatgaagggaaacttagataca 26271697
Query: 685 gttttcaatgtgctgataagaattcaacacccatcggaagagtttttccctatggtggta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26271696 gttttcaatgtgctgataagaattcaacacccatcggaagagtttttccctatggtggta 26271637
Query: 745 a 745
|
Sbjct: 26271636 a 26271636
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 741 ggtaaacctattaaaccaactaaagaaaaagaatttggtgtggaaaatcttgatcctcaa 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26270285 ggtaaacctattaaaccaactaaagaaaaagaatttggtgtggaaaatcttgatcctcaa 26270226
Query: 801 catacttacacttgtagttcacaagtgttttacaattaccgggcttttgccagtggaaat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26270225 catacttacacttgtagttcacaagtgttttacaattaccgggcttttgccagtggaaat 26270166
Query: 861 aaaactattgaaaccgattttg 882
||||||||||||||||||||||
Sbjct: 26270165 aaaactattgaaaccgattttg 26270144
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 104 aaggacgcatggtgtttcacaggaatacggctgatttccagatatgaccatggatttgtg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155225 aaggacgcatggtgtttcacaggaatacggctgatttccagatatgaccatggatttgtg 26155284
Query: 164 gcttaaacttttggcatttggcttcgcctttctggacaccgcaatgtttgttacagg 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155285 gcttaaacttttggcatttggcttcgcctttctggacaccgcaatgtttgttacagg 26155341
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 aatctgacatcaccacctagcagttcatgtagctggcgagtggttcggtcttagggtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155041 aatctgacatcaccacctagcagttcatgtagctggcgagtggttcggtcttagggtagc 26155100
Query: 61 agagaaggaaattgctccctctctgataagacgccagtgaaga 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155101 agagaaggaaattgctccctctctgataagacgccagtgaaga 26155143
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 242 agatgggcccaccacgttcactgcaccatcctctctgaccacttcagcaagcattttctc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26276674 agatgggcccaccacgttcactgcaccatcctctctgaccacttcagcaagcattttctc 26276615
Query: 302 caccgctgctctctcaaccatag 324
|||||||||||||||||||||||
Sbjct: 26276614 caccgctgctctctcaaccatag 26276592
Score = 141 bits (71), Expect = 9e-31
Identities = 116/123 (94%), Gaps = 6/123 (4%)
Strand = Plus / Minus
Query: 886 gtccaggaacccctcaagatattgaatgttctaataaa-gttctcaggaaggacatgtga 944
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 26264634 gtccaggaacccctcaggatattgaatgttctaataaaagttctcaggaaggacatgtga 26264575
Query: 945 cctggaaaccacct-acagtgta-ttcataagttc-ttctttg-tatc-gagtgatggag 999
|||||||||||||| |||||||| ||||||||||| ||||||| |||| |||||||||||
Sbjct: 26264574 cctggaaaccacctaacagtgtatttcataagttctttctttgttatcagagtgatggag 26264515
Query: 1000 gta 1002
|||
Sbjct: 26264514 gta 26264512
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,553,451
Number of extensions: 578
Number of successful extensions: 578
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 7
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)