Animal-Genome cDNA 20110601C-007664

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta...   585   0.0  
Alignment   gi|XP_002696296.1| PREDICTED: F-box and WD repeat domain contai...    58   3e-12
Alignment   gi|XP_612428.5| PREDICTED: F-box and WD repeat domain containin...    58   3e-12
Alignment   gi|NP_001071587.1| F-box only protein 16 [Bos taurus].                59   1e-08
Alignment   gi|NP_001178468.1| epithelial cell transforming sequence 2 onco...    58   2e-08
Alignment   gi|XP_002690323.1| PREDICTED: epithelial cell transforming sequ...    58   2e-08
Alignment   gi|NP_001070442.1| F-box/WD repeat-containing protein 2 [Bos ta...    56   6e-08
Alignment   gi|XP_002706902.1| PREDICTED: F-box only protein 16-like, parti...    55   2e-07
Alignment   gi|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos t...    54   3e-07
Alignment   gi|NP_001192404.1| F-box/WD repeat-containing protein 8 [Bos ta...    54   4e-07

>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
          Length = 627

 Score =  585 bits (1508), Expect(3) = 0.0
 Identities = 284/311 (91%), Positives = 286/311 (91%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            MCVPRSGL LS +CLYCG             TCLSMSTLESVTYLPEKGLYCQRLP+SRT
Sbjct: 1    MCVPRSGLILSCICLYCGVLLPVLLPNLPFLTCLSMSTLESVTYLPEKGLYCQRLPNSRT 60

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKN ENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
Sbjct: 61   HGGTESLKGKNPENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 120

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 121  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 180

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 181  EPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 240

Query: 902  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 1081
            WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD
Sbjct: 241  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 300

Query: 1082 DHVITCLQFCG 1114
            DHVITCLQFCG
Sbjct: 301  DHVITCLQFCG 311



 Score = 73.2 bits (178), Expect(3) = 0.0
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 309  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 348



 Score = 27.7 bits (60), Expect(3) = 0.0
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 352  NIIISGSTDRTLKVWN 367


>ref|XP_002696296.1| PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].
          Length = 542

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 77   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 137  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 197  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 251



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 244  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 281


>ref|XP_612428.5| PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos
            taurus].
          Length = 542

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 77   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 137  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 197  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 251



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 244  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 281


>ref|NP_001071587.1| F-box only protein 16 [Bos taurus].
          Length = 184

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +2

Query: 656 KMFQSWSGPEKLLALDELIDSCEPTQVK---HMMQVIAPQFQRDFISLLPKELALYVLSF 826
           K F  W+  ++   L  L++ C  +Q K     +Q   P    DF + LP+ L+L++ SF
Sbjct: 44  KWFDKWTDTQRRRILTSLLERCSLSQQKFCCRKLQEKIPAEALDFTTKLPRVLSLHIFSF 103

Query: 827 LEPKDLLQAAQTCRYWRILAEDNLLWREKC 916
           L+P+ L + AQ   +W+ L E + LW  KC
Sbjct: 104 LDPRSLCRCAQVSWHWKNLTELDQLWMLKC 133


>ref|NP_001178468.1| epithelial cell transforming sequence 2 oncogene-like [Bos taurus].
          Length = 905

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  +   C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 35  FDLWTNKQRQEFLFTIFLRCTKSQLRVIQDWFSERMQVAKVDFSTVLPRFISLYIFSFLN 94

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 95  PKDLCAAAQVSWPWKFLTEQDCLWMPKCIKFG 126


>ref|XP_002690323.1| PREDICTED: epithelial cell transforming sequence 2 oncogene-like
           [Bos taurus].
          Length = 905

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  +   C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 35  FDLWTNKQRQEFLFTIFLRCTKSQLRVIQDWFSERMQVAKVDFSTVLPRFISLYIFSFLN 94

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 95  PKDLCAAAQVSWPWKFLTEQDCLWMPKCIKFG 126


>ref|NP_001070442.1| F-box/WD repeat-containing protein 2 [Bos taurus].
          Length = 454

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 841
           F S +  +K   LD LI      Q++H+   +    +RDF+ LLP EL+ Y+L +L+P+ 
Sbjct: 17  FLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQT 76

Query: 842 LLQAAQTCRYW-RILAEDNLLWREKCK------EEGIDEPLHIKR 955
           LL      + W ++++    +W+  CK      ++ + + LH K+
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKSLGWQIDDSVQDALHWKK 121


>ref|XP_002706902.1| PREDICTED: F-box only protein 16-like, partial [Bos taurus].
          Length = 138

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVK--HMMQVIAPQFQRDFISLLPKELALYVLSFLEP 835
           F  W   ++   L  L++ C  +Q K    +Q   P    DF + LPK L+L + SFL+P
Sbjct: 1   FDKWMDTQRRKILTVLLEHCSLSQQKFCRKLQEKIPAEALDFTTKLPKVLSLCIFSFLDP 60

Query: 836 KDLLQAAQTCRYWRILAEDNLLWREKC 916
           + L   AQ   +W+ L E + LW  KC
Sbjct: 61  RSLCHCAQLSWHWKNLTELDQLWMLKC 87


>ref|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos taurus].
          Length = 569

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +2

Query: 653 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLP----KELALYVL 820
           +K F+ WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP      +A  +L
Sbjct: 102 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 161

Query: 821 SFLEPKDLLQAAQTCRYWRILAEDNLLWRE 910
           S+L+ + L  A   C+ W  +  D +LW++
Sbjct: 162 SYLDARSLCAAELVCKEWYRVTSDGMLWKK 191


>ref|NP_001192404.1| F-box/WD repeat-containing protein 8 [Bos taurus].
          Length = 599

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
 Frame = +2

Query: 791  LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIK 970
            LP ELA+ +  +L  ++L + AQ  + W+++AED +LW   C++EG     H+    +  
Sbjct: 120  LPYELAINIFQYLNRRELGRCAQVSKTWKVIAEDEVLWYRLCQQEG-----HLPESSISD 174

Query: 971  PGFIHSPWKSAY----IRQHRIDTNWR 1039
                +S WK  +     ++H + TNW+
Sbjct: 175  ----YSCWKLVFQECRAKEHMLRTNWK 197


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,085,791
Number of extensions: 1273752
Number of successful extensions: 4149
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4145
Number of HSP's successfully gapped: 17
Length of query: 427
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,207,134
Effective search space: 4574697148
Effective search space used: 4574697148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor...   588   0.0  
Alignment   gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor...   558   e-176
Alignment   gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor...   447   e-142
Alignment   gi|XP_866566.1| PREDICTED: similar to F-box and WD-40 domain pr...    60   3e-12
Alignment   gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr...    58   3e-12
Alignment   gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1...    58   3e-12
Alignment   gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr...    58   3e-12
Alignment   gi|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain pr...    58   3e-12
Alignment   gi|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain pr...    58   3e-12
Alignment   gi|XP_866538.1| PREDICTED: similar to F-box and WD-40 domain pr...    58   3e-12

>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
            familiaris].
          Length = 627

 Score =  588 bits (1517), Expect(3) = 0.0
 Identities = 286/311 (91%), Positives = 287/311 (92%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            MCVPRSGL LS +CLYCG             TCLSMSTLESVTYLPEKGLYCQRLPSSRT
Sbjct: 1    MCVPRSGLILSCICLYCGVLLPVLLPDLPFLTCLSMSTLESVTYLPEKGLYCQRLPSSRT 60

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
Sbjct: 61   HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 120

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 121  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 180

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 181  EPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 240

Query: 902  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 1081
            WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD
Sbjct: 241  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 300

Query: 1082 DHVITCLQFCG 1114
            DHVITCLQFCG
Sbjct: 301  DHVITCLQFCG 311



 Score = 73.2 bits (178), Expect(3) = 0.0
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 309  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 348



 Score = 27.7 bits (60), Expect(3) = 0.0
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 352  NIIISGSTDRTLKVWN 367


>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
            familiaris].
          Length = 637

 Score =  558 bits (1439), Expect(3) = e-176
 Identities = 279/321 (86%), Positives = 281/321 (87%), Gaps = 10/321 (3%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            MCVPRSGL LS +CLYCG             TCLSMSTLESVTYLPEKGLYCQRLPSSRT
Sbjct: 1    MCVPRSGLILSCICLYCGVLLPVLLPDLPFLTCLSMSTLESVTYLPEKGLYCQRLPSSRT 60

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
Sbjct: 61   HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 120

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 121  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 180

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 181  EPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 240

Query: 902  WREKCKEEG--IDEPLHI--------KRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGEL 1051
            WREKCKEE   I+    I         RRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGEL
Sbjct: 241  WREKCKEEETIIEHETDILYVILPFKGRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGEL 300

Query: 1052 KSPKVLKGHDDHVITCLQFCG 1114
            KSPKVLKGHDDHVITCLQFCG
Sbjct: 301  KSPKVLKGHDDHVITCLQFCG 321



 Score = 73.2 bits (178), Expect(3) = e-176
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 319  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 358



 Score = 27.7 bits (60), Expect(3) = e-176
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 362  NIIISGSTDRTLKVWN 377


>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
            familiaris].
          Length = 589

 Score =  447 bits (1151), Expect(3) = e-142
 Identities = 215/225 (95%), Positives = 216/225 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            +MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 49   RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 109  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 168

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 1114
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG
Sbjct: 229  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 273



 Score = 73.2 bits (178), Expect(3) = e-142
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 271  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 310



 Score = 27.7 bits (60), Expect(3) = e-142
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 314  NIIISGSTDRTLKVWN 329


>ref|XP_866566.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 5
            [Canis familiaris].
          Length = 485

 Score = 60.5 bits (145), Expect(2) = 3e-12
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 66   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 125

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS 1000
            S+L+ + L  A   C+ W+ +  + +LW++  +   I+      R  + +        K 
Sbjct: 126  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMTIESNWRCGRHNLQRIQCRSENSKG 185

Query: 1001 AYIRQHRID-----------TNWRRGELKSPKVLKGHDDHVITCLQF 1108
             Y  Q+  +             W +  L+  KVL GH   V+ CLQ+
Sbjct: 186  VYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVL-CLQY 231



 Score = 30.4 bits (67), Expect(2) = 3e-12
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 1122 IVSGSDDNPLKVWSAVTGKCLRTLV 1196
            IV+GS D+ ++VW   TG+ L TL+
Sbjct: 236  IVTGSSDSTVRVWDVNTGEVLNTLI 260


>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
            [Canis familiaris].
          Length = 563

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 98   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 157

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 158  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 217

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 218  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 272



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 265  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 302


>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
            protein 1B) (F-box and WD-repeats protein beta-TrCP2)
            isoform 8 [Canis familiaris].
          Length = 542

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 77   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 137  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 197  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 251



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 244  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 281


>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
            [Canis familiaris].
          Length = 531

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 66   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 125

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 126  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 185

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 186  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 240



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 233  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 270


>ref|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
            isoform 1 [Canis familiaris].
          Length = 529

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 64   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 123

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 124  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 183

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 184  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 238



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 231  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 268


>ref|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
            isoform 6 [Canis familiaris].
          Length = 510

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 45   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 104

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 105  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 164

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 165  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 219



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 212  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 249


>ref|XP_866538.1| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform A
            isoform 3 [Canis familiaris].
          Length = 508

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 43   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 102

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 103  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 162

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 163  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 217



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 210  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 247


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,050,451
Number of extensions: 1303821
Number of successful extensions: 4482
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4471
Number of HSP's successfully gapped: 30
Length of query: 427
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 321
Effective length of database: 15,340,888
Effective search space: 4924425048
Effective search space used: 4924425048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ...   567   e-178
Alignment   gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform...   447   e-142
Alignment   gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform...   447   e-142
Alignment   gi|NP_001035551.2| dual endothelin 1/angiotensin II receptor 1 ...    73   4e-13
Alignment   gi|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musc...    57   5e-12
Alignment   gi|NP_056610.1| F-box only protein 16 [Mus musculus].                 62   7e-10
Alignment   gi|NP_001181965.1| epithelial cell transforming sequence 2 onco...    61   2e-09
Alignment   gi|XP_003084882.1| PREDICTED: epithelial cell-transforming sequ...    61   2e-09
Alignment   gi|XP_001474994.1| PREDICTED: epithelial cell-transforming sequ...    61   2e-09
Alignment   gi|NP_001158241.1| F-box/WD repeat-containing protein 2 isoform...    56   5e-08

>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
          Length = 629

 Score =  567 bits (1462), Expect(3) = e-178
 Identities = 277/311 (89%), Positives = 281/311 (90%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            +CVP S L LS +C   G              CLSMSTLESVTYLPEKGLYCQRLPSSRT
Sbjct: 3    VCVPSSVLVLSCVCWCWGVLLPVPLPNLPFLACLSMSTLESVTYLPEKGLYCQRLPSSRT 62

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVS+YTSTTGLV
Sbjct: 63   HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLV 122

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 123  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 182

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 183  EPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 242

Query: 902  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 1081
            WREKCKEEGIDEPLHIKRRK+IKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD
Sbjct: 243  WREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 302

Query: 1082 DHVITCLQFCG 1114
            DHVITCLQFCG
Sbjct: 303  DHVITCLQFCG 313



 Score = 73.2 bits (178), Expect(3) = e-178
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 311  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 350



 Score = 27.7 bits (60), Expect(3) = e-178
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 354  NIIISGSTDRTLKVWN 369


>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
          Length = 710

 Score =  447 bits (1150), Expect(3) = e-142
 Identities = 214/225 (95%), Positives = 216/225 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            KMKRKLDHGSEVRSFSLGKKPCKVS+YTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 170  KMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 229

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 230  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 289

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK+IKPGF
Sbjct: 290  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGF 349

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 1114
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG
Sbjct: 350  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 394



 Score = 73.2 bits (178), Expect(3) = e-142
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 392  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 431



 Score = 27.7 bits (60), Expect(3) = e-142
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 435  NIIISGSTDRTLKVWN 450


>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
          Length = 710

 Score =  447 bits (1150), Expect(3) = e-142
 Identities = 214/225 (95%), Positives = 216/225 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            KMKRKLDHGSEVRSFSLGKKPCKVS+YTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 170  KMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 229

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 230  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 289

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK+IKPGF
Sbjct: 290  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGF 349

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 1114
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG
Sbjct: 350  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 394



 Score = 73.2 bits (178), Expect(3) = e-142
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 392  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 431



 Score = 27.7 bits (60), Expect(3) = e-142
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 435  NIIISGSTDRTLKVWN 450


>ref|NP_001035551.2| dual endothelin 1/angiotensin II receptor 1 homolog [Mus musculus].
          Length = 91

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = -3

Query: 783 MKSR*NWGAITCIICFTWVGSQLSISSSKASNFSGPLQL 667
           MKSR NWG+ITCIICFT VGSQLS+SSSKASNFSGPLQL
Sbjct: 1   MKSRWNWGSITCIICFTCVGSQLSMSSSKASNFSGPLQL 39


>ref|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musculus].
          Length = 563

 Score = 57.4 bits (137), Expect(2) = 5e-12
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 98   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 157

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 158  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 217

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQF 1108
               P   F  S +         I++NWR G     ++  +  +   + CLQ+
Sbjct: 218  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQY 269



 Score = 32.3 bits (72), Expect(2) = 5e-12
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +  ++I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 265  YCLQYDDDKIISGLRDNSIKIWDKSSLECLKVLTG-HTG 302


>ref|NP_056610.1| F-box only protein 16 [Mus musculus].
          Length = 334

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = +2

Query: 656 KMFQSWSGPEKLLALDELIDSCEPTQVK---HMMQVIAPQFQRDFISLLPKELALYVLSF 826
           K F  W+  ++   L  L++ C  +Q K     +Q   P    DF + LP+ L++Y+ SF
Sbjct: 44  KWFDKWTDSQRRRILTGLLERCSLSQQKFCCRKLQEKIPAEALDFTTKLPRVLSVYIFSF 103

Query: 827 LEPKDLLQAAQTCRYWRILAEDNLLWREKC 916
           L+P+ L + AQ   YW+ LAE + LW  KC
Sbjct: 104 LDPRSLCRCAQVSWYWKSLAELDQLWMLKC 133


>ref|NP_001181965.1| epithelial cell transforming sequence 2 oncogene-like [Mus
           musculus].
          Length = 911

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  ++  C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 47  FDLWTNKQRREFLFVILSQCSKSQLRFIQDWFSERKQVARVDFSTVLPRFISLYIFSFLN 106

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 107 PKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFG 138


>ref|XP_003084882.1| PREDICTED: epithelial cell-transforming sequence 2 oncogene-like
           [Mus musculus].
          Length = 911

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  ++  C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 47  FDLWTNKQRREFLFVILSQCSKSQLRFIQDWFSERKQVARVDFSTVLPRFISLYIFSFLN 106

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 107 PKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFG 138


>ref|XP_001474994.1| PREDICTED: epithelial cell-transforming sequence 2 oncogene-like
           [Mus musculus].
          Length = 901

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  ++  C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 37  FDLWTNKQRREFLFVILSQCSKSQLRFIQDWFSERKQVARVDFSTVLPRFISLYIFSFLN 96

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 97  PKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFG 128


>ref|NP_001158241.1| F-box/WD repeat-containing protein 2 isoform 2 [Mus musculus].
          Length = 359

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 841
           F S +  +K   LD LI      Q++H+   +    +RDF+ LLP EL+ Y+L +L+P+ 
Sbjct: 17  FLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQT 76

Query: 842 LLQAAQTCRYW-RILAEDNLLWREKCK------EEGIDEPLHIKR 955
           LL      + W ++++    +W+  CK      ++ + + LH K+
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKK 121


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,068,143
Number of extensions: 1108444
Number of successful extensions: 3518
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3514
Number of HSP's successfully gapped: 22
Length of query: 427
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 323
Effective length of database: 12,493,815
Effective search space: 4035502245
Effective search space used: 4035502245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei...   586   e-180
Alignment   gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei...   439   e-137
Alignment   gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei...   438   e-136
Alignment   gi|XP_001928811.1| PREDICTED: f-box only protein 16-like [Sus s...    60   3e-09
Alignment   gi|XP_001926401.1| PREDICTED: epithelial cell-transforming sequ...    58   1e-08
Alignment   gi|XP_003353680.1| PREDICTED: f-box/WD repeat-containing protei...    56   4e-08
Alignment   gi|XP_001927335.1| PREDICTED: f-box/WD repeat-containing protei...    56   4e-08
Alignment   gi|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protei...    55   8e-08
Alignment   gi|XP_003359388.1| PREDICTED: f-box/WD repeat-containing protei...    55   8e-08
Alignment   gi|XP_003132940.1| PREDICTED: LOW QUALITY PROTEIN: f-box/WD rep...    55   8e-08

>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
            scrofa].
          Length = 627

 Score =  586 bits (1510), Expect(3) = e-180
 Identities = 285/306 (93%), Positives = 285/306 (93%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            MCVPRSGLRLSRLCLYCG             TCLSMSTLESVTYLPEKGLYCQRLPSSRT
Sbjct: 1    MCVPRSGLRLSRLCLYCGVLLPVLLPNLPFLTCLSMSTLESVTYLPEKGLYCQRLPSSRT 60

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
Sbjct: 61   HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 120

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 121  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 180

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 181  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 240

Query: 902  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 1081
            WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD
Sbjct: 241  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 300

Query: 1082 DHVITC 1099
            DHVITC
Sbjct: 301  DHVITC 306



 Score = 61.2 bits (147), Expect(3) = e-180
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +3

Query: 1128 SGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            SGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 316  SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 348



 Score = 27.7 bits (60), Expect(3) = e-180
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 352  NIIISGSTDRTLKVWN 367


>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
            scrofa].
          Length = 705

 Score =  439 bits (1129), Expect(3) = e-137
 Identities = 212/220 (96%), Positives = 212/220 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 165  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 224

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK
Sbjct: 225  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 284

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 285  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 344

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC 1099
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC
Sbjct: 345  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC 384



 Score = 61.2 bits (147), Expect(3) = e-137
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +3

Query: 1128 SGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            SGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 394  SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 426



 Score = 27.7 bits (60), Expect(3) = e-137
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 430  NIIISGSTDRTLKVWN 445


>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
            scrofa].
          Length = 589

 Score =  438 bits (1126), Expect(3) = e-136
 Identities = 211/220 (95%), Positives = 212/220 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            +MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 49   RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK
Sbjct: 109  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 168

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC 1099
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC
Sbjct: 229  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC 268



 Score = 61.2 bits (147), Expect(3) = e-136
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +3

Query: 1128 SGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            SGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 278  SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 310



 Score = 27.7 bits (60), Expect(3) = e-136
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 314  NIIISGSTDRTLKVWN 329


>ref|XP_001928811.1| PREDICTED: f-box only protein 16-like [Sus scrofa].
          Length = 292

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +2

Query: 656 KMFQSWSGPEKLLALDELIDSCEPTQVK---HMMQVIAPQFQRDFISLLPKELALYVLSF 826
           K F  W+  ++   L  L++ C  +Q K     +Q   P    DF + LP+ L+LY+ SF
Sbjct: 44  KWFDKWTDSQRRRILTGLLERCSLSQQKFCCRKLQEKIPAEALDFTTKLPRVLSLYIFSF 103

Query: 827 LEPKDLLQAAQTCRYWRILAEDNLLWREKC 916
           L+P+ L + AQ   +W+ L E + LW  KC
Sbjct: 104 LDPRSLCRCAQVSWHWKNLTELDQLWMLKC 133


>ref|XP_001926401.1| PREDICTED: epithelial cell-transforming sequence 2 oncogene-like
           [Sus scrofa].
          Length = 905

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  +   C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 35  FDLWTNKQRQEFLCTIFLRCSKSQLRIVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLN 94

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 95  PKDLCAAAQVSWPWKFLTEQDCLWMPKCIKFG 126


>ref|XP_003353680.1| PREDICTED: f-box/WD repeat-containing protein 2-like [Sus scrofa].
          Length = 359

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 841
           F S +  +K   LD LI      Q++H+   +    +RDF+ LLP EL+ Y+L +L+P+ 
Sbjct: 17  FLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQT 76

Query: 842 LLQAAQTCRYW-RILAEDNLLWREKCK------EEGIDEPLHIKR 955
           LL      + W ++++    +W+  CK      ++ + + LH K+
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKK 121


>ref|XP_001927335.1| PREDICTED: f-box/WD repeat-containing protein 2 isoform 1 [Sus
           scrofa].
          Length = 454

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 841
           F S +  +K   LD LI      Q++H+   +    +RDF+ LLP EL+ Y+L +L+P+ 
Sbjct: 17  FLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQT 76

Query: 842 LLQAAQTCRYW-RILAEDNLLWREKCK------EEGIDEPLHIKR 955
           LL      + W ++++    +W+  CK      ++ + + LH K+
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKK 121


>ref|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protein 1A, partial [Sus
           scrofa].
          Length = 497

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +2

Query: 653 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLP----KELALYVL 820
           +K F+ WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP      +A  +L
Sbjct: 30  VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 89

Query: 821 SFLEPKDLLQAAQTCRYWRILAEDNLLWRE 910
           S+L+ K L  A   C+ W  +  D +LW++
Sbjct: 90  SYLDAKSLCAAELVCKEWYRVTSDGMLWKK 119


>ref|XP_003359388.1| PREDICTED: f-box/WD repeat-containing protein 1A-like, partial [Sus
           scrofa].
          Length = 488

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +2

Query: 653 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLP----KELALYVL 820
           +K F+ WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP      +A  +L
Sbjct: 138 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 197

Query: 821 SFLEPKDLLQAAQTCRYWRILAEDNLLWRE 910
           S+L+ K L  A   C+ W  +  D +LW++
Sbjct: 198 SYLDAKSLCAAELVCKEWYRVTSDGMLWKK 227


>ref|XP_003132940.1| PREDICTED: LOW QUALITY PROTEIN: f-box/WD repeat-containing protein
            8-like [Sus scrofa].
          Length = 597

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +2

Query: 779  FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRR 958
            F S LP E+A+ +  +L+ K+L + AQ  + W+++AED +LW   C++EG     H+   
Sbjct: 120  FNSQLPYEVAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQEG-----HLPES 174

Query: 959  KVIKPGFIHSPWKSAY----IRQHRIDTNWR 1039
             +      +S WK  +     ++H + TNW+
Sbjct: 175  NISD----YSCWKLIFQECQAKEHILRTNWK 201


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,488,396
Number of extensions: 809310
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 17
Length of query: 427
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 325
Effective length of database: 8,804,438
Effective search space: 2861442350
Effective search space used: 2861442350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ...   588   0.0  
Alignment   gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ...   449   e-143
Alignment   gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform...   447   e-142
Alignment   gi|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C...    58   3e-12
Alignment   gi|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B...    58   3e-12
Alignment   gi|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A...    58   3e-12
Alignment   gi|NP_758954.1| F-box only protein 16 [Homo sapiens].                 65   1e-10
Alignment   gi|NP_001181966.1| epithelial cell-transforming sequence 2 onco...    59   1e-08
Alignment   gi|NP_001071174.1| epithelial cell-transforming sequence 2 onco...    59   1e-08
Alignment   gi|NP_036296.2| F-box/WD repeat-containing protein 2 [Homo sapi...    56   6e-08

>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
          Length = 627

 Score =  588 bits (1517), Expect(3) = 0.0
 Identities = 286/311 (91%), Positives = 287/311 (92%)
 Frame = +2

Query: 182  MCVPRSGLRLSRLCLYCGXXXXXXXXXXXXXTCLSMSTLESVTYLPEKGLYCQRLPSSRT 361
            MCVPRSGL LS +CLYCG             TCLSMSTLESVTYLPEKGLYCQRLPSSRT
Sbjct: 1    MCVPRSGLILSCICLYCGVLLPVLLPNLPFLTCLSMSTLESVTYLPEKGLYCQRLPSSRT 60

Query: 362  HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 541
            HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
Sbjct: 61   HGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV 120

Query: 542  PCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 721
            PCSATPTTFGDLRAAN        ITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC
Sbjct: 121  PCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSC 180

Query: 722  EPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 901
            EPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL
Sbjct: 181  EPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 240

Query: 902  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 1081
            WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD
Sbjct: 241  WREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHD 300

Query: 1082 DHVITCLQFCG 1114
            DHVITCLQFCG
Sbjct: 301  DHVITCLQFCG 311



 Score = 73.2 bits (178), Expect(3) = 0.0
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 309  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 348



 Score = 27.7 bits (60), Expect(3) = 0.0
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 352  NIIISGSTDRTLKVWN 367


>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
          Length = 707

 Score =  449 bits (1154), Expect(3) = e-143
 Identities = 216/225 (96%), Positives = 216/225 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 167  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 226

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 227  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 286

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 287  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 346

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 1114
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG
Sbjct: 347  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 391



 Score = 73.2 bits (178), Expect(3) = e-143
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 389  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 428



 Score = 27.7 bits (60), Expect(3) = e-143
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 432  NIIISGSTDRTLKVWN 447


>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
          Length = 589

 Score =  447 bits (1151), Expect(3) = e-142
 Identities = 215/225 (95%), Positives = 216/225 (96%)
 Frame = +2

Query: 440  KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 619
            +MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN        IT
Sbjct: 49   RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108

Query: 620  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 799
            SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 109  SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 168

Query: 800  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 979
            ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169  ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228

Query: 980  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 1114
            IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG
Sbjct: 229  IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 273



 Score = 73.2 bits (178), Expect(3) = e-142
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 1107 FAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSGMWSSQ 1226
            F GNRIVSGSDDN LKVWSAVTGKCLRTLVG   G+WSSQ
Sbjct: 271  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 310



 Score = 27.7 bits (60), Expect(3) = e-142
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 1234 HIIISGSTDRTLKL*N 1281
            +IIISGSTDRTLK+ N
Sbjct: 314  NIIISGSTDRTLKVWN 329


>ref|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C [Homo sapiens].
          Length = 542

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 77   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 137  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 197  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 251



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 244  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 281


>ref|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B [Homo sapiens].
          Length = 529

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 64   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 123

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 124  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 183

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 184  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 238



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 231  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 268


>ref|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A [Homo sapiens].
          Length = 508

 Score = 57.8 bits (138), Expect(2) = 3e-12
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
 Frame = +2

Query: 653  LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 820
            +K F  WS  +++  ++ LI      Q  H+   + P  QRDFI+ LP++    +A  +L
Sbjct: 43   IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 102

Query: 821  SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 961
            S+L+ + L  A   C+ W+ +  + +LW++  +     +PL               K R 
Sbjct: 103  SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 162

Query: 962  VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGE 1117
               P   F  S +         I++NWR G     ++  +  +   + CLQ+  E
Sbjct: 163  TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDE 217



 Score = 32.7 bits (73), Expect(2) = 3e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 1095 HAYSFAGNRIVSGSDDNPLKVWSAVTGKCLRTLVGPHSG 1211
            +   +   +I+SG  DN +K+W   + +CL+ L G H+G
Sbjct: 210  YCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG-HTG 247


>ref|NP_758954.1| F-box only protein 16 [Homo sapiens].
          Length = 292

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = +2

Query: 656 KMFQSWSGPEKLLALDELIDSCEPTQVK---HMMQVIAPQFQRDFISLLPKELALYVLSF 826
           K F  W+  ++   L  L++ C  +Q K     +Q   P    DF + LP+ L+LY+ SF
Sbjct: 44  KWFDKWTDSQRRRILTGLLERCSLSQQKFCCRKLQEKIPAEALDFTTKLPRVLSLYIFSF 103

Query: 827 LEPKDLLQAAQTCRYWRILAEDNLLWREKC 916
           L+P+ L + AQ C +W+ LAE + LW  KC
Sbjct: 104 LDPRSLCRCAQVCWHWKNLAELDQLWMLKC 133


>ref|NP_001181966.1| epithelial cell-transforming sequence 2 oncogene-like [Homo
           sapiens].
          Length = 904

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  +   C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 35  FDLWTNKQRQEFLFAIFLRCTKSQLRFVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLS 94

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 95  PKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFG 126


>ref|NP_001071174.1| epithelial cell-transforming sequence 2 oncogene-like [Homo
           sapiens].
          Length = 904

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQR---DFISLLPKELALYVLSFLE 832
           F  W+  ++   L  +   C  +Q++ +    + + Q    DF ++LP+ ++LY+ SFL 
Sbjct: 35  FDLWTNKQRQEFLFAIFLRCTKSQLRFVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLS 94

Query: 833 PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 928
           PKDL  AAQ    W+ L E + LW  KC + G
Sbjct: 95  PKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFG 126


>ref|NP_036296.2| F-box/WD repeat-containing protein 2 [Homo sapiens].
          Length = 454

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 662 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 841
           F S +  +K   LD LI      Q++H+   +    +RDF+ LLP EL+ Y+L +L+P+ 
Sbjct: 17  FLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQT 76

Query: 842 LLQAAQTCRYW-RILAEDNLLWREKCK------EEGIDEPLHIKR 955
           LL      + W ++++    +W+  CK      ++ + + LH K+
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKK 121


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,363,866
Number of extensions: 1295713
Number of successful extensions: 4302
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4294
Number of HSP's successfully gapped: 23
Length of query: 427
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,835,944
Effective search space: 4777173968
Effective search space used: 4777173968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007664
         (1283 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896255.2| Sus scrofa unplaced genomic scaffold ChrUScaf4139      876   0.0  
Sscrofa_Chr08                                                         844   0.0  

>gb|GL896255.2| Sus scrofa unplaced genomic scaffold ChrUScaf4139
          Length = 126228

 Score =  876 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1     gcattgctgagtcctggactgcaccattctgtgttctagggaagatgtaatctgatccct 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66337 gcattgctgagtcctggactgcaccattctgtgttctagggaagatgtaatctgatccct 66278

                                                                         
Query: 61    gcgctgctgagggaggaatctgttcagtcccggctctgacagggcacggtctcctccagt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277 gcgctgctgagggaggaatctgttcagtcccggctctgacagggcacggtctcctccagt 66218

                                                                         
Query: 121   aatctcctcggttctccctcgctattccctcgagttctcctccgtcaagctgcatgtatg 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66217 aatctcctcggttctccctcgctattccctcgagttctcctccgtcaagctgcatgtatg 66158

                                                                         
Query: 181   tatgtgcgtcccgagaagcggtctgagactgagccgcctgtgcctctactgtggagtttt 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66157 tatgtgcgtcccgagaagcggtctgagactgagccgcctgtgcctctactgtggagtttt 66098

                                                                         
Query: 241   gttgccggttctgctccctaatcttccttttctgacgtgcctgagcatgtccacattaga 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66097 gttgccggttctgctccctaatcttccttttctgacgtgcctgagcatgtccacattaga 66038

                                                                         
Query: 301   atctgtgacatacctacctgaaaaaggtttatattgtcagcgactgccaagcagccggac 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66037 atctgtgacatacctacctgaaaaaggtttatattgtcagcgactgccaagcagccggac 65978

                                                                         
Query: 361   acacgggggcacagaatcgctgaaggggaaaaatacagaaaatatgggtttctacggcac 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65977 acacgggggcacagaatcgctgaaggggaaaaatacagaaaatatgggtttctacggcac 65918

                                   
Query: 421   actaaaaatgattttttacaaa 442
             ||||||||||||||||||||||
Sbjct: 65917 actaaaaatgattttttacaaa 65896



 Score =  285 bits (144), Expect = 3e-74
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                         
Query: 524   agtaccactggactcgtaccatgttcagcaacaccaacaacttttggagacctgagagca 583
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59957 agtaccactggactcgtaccatgttcagcaacaccaacaacttttggagacctgagagca 59898

                                                                         
Query: 584   gccaatggccaagggcagcagcgacgccgaatcacatctgtccaaccacctacgggcctc 643
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59897 gccaatggccaagggcagcagcgacgccgaatcacatctgtccaaccacctacgggcctc 59838

                                     
Query: 644   caggaatggctgaagatgtttcag 667
             ||||||||||||||||||||||||
Sbjct: 59837 caggaatggctgaagatgtttcag 59814



 Score =  278 bits (140), Expect = 7e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                         
Query: 926   ggtattgacgaaccactgcatatcaagagaagaaaagtaataaaaccaggtttcatacac 985
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42162 ggtattgacgaaccactgcatatcaagagaagaaaagtaataaaaccaggtttcatacac 42103

                                                                         
Query: 986   agtccatggaaaagtgcctacatcagacagcacagaattgatactaactggaggcgagga 1045
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42102 agtccatggaaaagtgcctacatcagacagcacagaattgatactaactggaggcgagga 42043

                                 
Query: 1046  gaactcaaatctcctaaggt 1065
             ||||||||||||||||||||
Sbjct: 42042 gaactcaaatctcctaaggt 42023



 Score =  272 bits (137), Expect = 4e-70
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                         
Query: 666   agagctggagtggaccagagaaattgcttgctttagatgaacttatcgatagttgtgaac 725
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50149 agagctggagtggaccagagaaattgcttgctttagatgaacttatcgatagttgtgaac 50090

                                                                         
Query: 726   caacccaagtgaaacatatgatgcaagtgatagcaccccagtttcaacgggacttcattt 785
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50089 caacccaagtgaaacatatgatgcaagtgatagcaccccagtttcaacgggacttcattt 50030

                              
Query: 786   ccttgctccctaaagag 802
             |||||||||||||||||
Sbjct: 50029 ccttgctccctaaagag 50013



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                         
Query: 801   agctggcactttatgtgctttcattcctggaacccaaagacctgctacaggctgctcaga 860
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44207 agctggcactttatgtgctttcattcctggaacccaaagacctgctacaggctgctcaga 44148

                                                                         
Query: 861   cgtgtcgctactggaggattctggctgaagacaaccttctctggagagaaaaatgcaaag 920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44147 cgtgtcgctactggaggattctggctgaagacaaccttctctggagagaaaaatgcaaag 44088

                      
Query: 921   aagagggta 929
             |||||||||
Sbjct: 44087 aagagggta 44079



 Score =  165 bits (83), Expect = 7e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                         
Query: 443   atgaaaagaaagttggaccatggttctgaggtccgctctttttctttgggaaagaaacca 502
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63319 atgaaaagaaagttggaccatggttctgaggtccgctctttttctttgggaaagaaacca 63260

                                    
Query: 503   tgcaaagtctcagaatatacaag 525
             |||||||||||||||||||||||
Sbjct: 63259 tgcaaagtctcagaatatacaag 63237



 Score =  111 bits (56), Expect = 1e-21
 Identities = 99/108 (91%), Gaps = 4/108 (3%)
 Strand = Plus / Minus

                                                                         
Query: 1179  tgtctgaggacattagtgggaccacacag-tggaatgtggtcatccca-atgaaagaca- 1235
             |||||||||||||||||||||| |||||| |||| |||||||||| || |||| ||||| 
Sbjct: 39521 tgtctgaggacattagtgggac-acacaggtggagtgtggtcatcacagatgagagacaa 39463

                                                             
Query: 1236  tatcatcattagtggatcgacagaccggactctcaaattgtgaaacgc 1283
             ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 39462 tatcatcattagtggatcgacagaccggactctcaaagtgtggaacgc 39415



 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                 
Query: 1127  tagtggctctgatgacaaccctttaaaagtctggtcggcagtcacaggcaaa 1178
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 40848 tagtggctctgatgacaacactttaaaagtctggtcggcagtcacaggcaaa 40797



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                     
Query: 1062  aggtgctgaaagggcatgatgatcacgtgatcacatgctt 1101
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40988 aggtgctgaaagggcatgatgatcacgtgatcacatgctt 40949


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  844 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gcattgctgagtcctggactgcaccattctgtgttctagggaagatgtaatctgatccct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81193649 gcattgctgagtcctggactgcaccattctgtgttctagggaagatgtaatctgatccct 81193708

                                                                            
Query: 61       gcgctgctgagggaggaatctgttcagtcccggctctgacagggcacggtctcctccagt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81193709 gcgctgctgagggaggaatctgttcagtcccggctctgacagggcacggtctcctccagt 81193768

                                                                            
Query: 121      aatctcctcggttctccctcgctattccctcgagttctcctccgtcaagctgcatgtatg 180
                |||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| 
Sbjct: 81193769 aatctcctcggttctccctcgctattccctcgagttctcctccgtcaagcggccggtatt 81193828

                                                                            
Query: 181      tatgtgcgtcccgagaagcggtctgagactgagccgcctgtgcctctactgtggagtttt 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81193829 tatgtgcgtcccgagaagcggtctgagactgagccgcctgtgcctctactgtggagtttt 81193888

                                                                            
Query: 241      gttgccggttctgctccctaatcttccttttctgacgtgcctgagcatgtccacattaga 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81193889 gttgccggttctgctccctaatcttccttttctgacgtgcctgagcatgtccacattaga 81193948

                                                                            
Query: 301      atctgtgacatacctacctgaaaaaggtttatattgtcagcgactgccaagcagccggac 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81193949 atctgtgacatacctacctgaaaaaggtttatattgtcagcgactgccaagcagccggac 81194008

                                                                            
Query: 361      acacgggggcacagaatcgctgaaggggaaaaatacagaaaatatgggtttctacggcac 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81194009 acacgggggcacagaatcgctgaaggggaaaaatacagaaaatatgggtttctacggcac 81194068

                                      
Query: 421      actaaaaatgattttttacaaa 442
                ||||||||||||||||||||||
Sbjct: 81194069 actaaaaatgattttttacaaa 81194090



 Score =  285 bits (144), Expect = 3e-74
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                            
Query: 524      agtaccactggactcgtaccatgttcagcaacaccaacaacttttggagacctgagagca 583
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81208337 agtaccactggactcgtaccatgttcagcaacaccaacaacttttggagacctgagagca 81208396

                                                                            
Query: 584      gccaatggccaagggcagcagcgacgccgaatcacatctgtccaaccacctacgggcctc 643
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81208397 gccaatggccaagggcagcagcgacgccgaatcacatctgtccaaccacctacgggcctc 81208456

                                        
Query: 644      caggaatggctgaagatgtttcag 667
                ||||||||||||||||||||||||
Sbjct: 81208457 caggaatggctgaagatgtttcag 81208480



 Score =  272 bits (137), Expect = 4e-70
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                            
Query: 666      agagctggagtggaccagagaaattgcttgctttagatgaacttatcgatagttgtgaac 725
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81215045 agagctggagtggaccagagaaattgcttgctttagatgaacttatcgatagttgtgaac 81215104

                                                                            
Query: 726      caacccaagtgaaacatatgatgcaagtgatagcaccccagtttcaacgggacttcattt 785
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81215105 caacccaagtgaaacatatgatgcaagtgatagcaccccagtttcaacgggacttcattt 81215164

                                 
Query: 786      ccttgctccctaaagag 802
                |||||||||||||||||
Sbjct: 81215165 ccttgctccctaaagag 81215181



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                            
Query: 801      agctggcactttatgtgctttcattcctggaacccaaagacctgctacaggctgctcaga 860
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81220949 agctggcactttatgtgctttcattcctggaacccaaagacctgctacaggctgctcaga 81221008

                                                                            
Query: 861      cgtgtcgctactggaggattctggctgaagacaaccttctctggagagaaaaatgcaaag 920
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81221009 cgtgtcgctactggaggattctggctgaagacaaccttctctggagagaaaaatgcaaag 81221068

                         
Query: 921      aagagggta 929
                |||||||||
Sbjct: 81221069 aagagggta 81221077


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,853,202
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 13
Length of query: 1283
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1262
Effective length of database: 2,808,413,156
Effective search space: 3544217402872
Effective search space used: 3544217402872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)