Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030196.1| mitochondrial import inner membrane transloc... 595 e-170
Alignment gi|NP_001179369.1| carboxy-terminal domain RNA polymerase II po... 80 3e-15
Alignment gi|XP_002685616.1| PREDICTED: CTD (carboxy-terminal domain, RNA... 80 3e-15
Alignment gi|NP_001180010.2| CTD small phosphatase-like protein [Bos taur... 80 4e-15
Alignment gi|XP_002696988.1| PREDICTED: small CTD phosphatase 3-like [Bos... 80 4e-15
Alignment gi|NP_001178334.1| CTD (carboxy-terminal domain, RNA polymerase... 75 7e-14
Alignment gi|XP_002691164.1| PREDICTED: CTD (carboxy-terminal domain, RNA... 75 7e-14
Alignment gi|NP_001039400.1| carboxy-terminal domain RNA polymerase II po... 74 2e-13
Alignment gi|NP_001039491.1| CTD nuclear envelope phosphatase 1 [Bos taur... 63 5e-10
>ref|NP_001030196.1| mitochondrial import inner membrane translocase subunit TIM50
precursor [Bos taurus].
Length = 355
Score = 595 bits (1534), Expect = e-170
Identities = 296/332 (89%), Positives = 300/332 (90%)
Frame = +1
Query: 34 MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQRSSE 213
MAASA +FLRLRSGL QGARGLCARLAT PPRAPDQ AEIGSRAGTK Q QGPQQQRSSE
Sbjct: 1 MAASAAVFLRLRSGLRQGARGLCARLATPPPRAPDQAAEIGSRAGTKAQTQGPQQQRSSE 60
Query: 214 GPSYAKKVXXXXXXXXXXXXTVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYKY 393
GPSYAKKV TVS++YIFGNN+VDENGAKIPDEFDNDPILVQQLRRTYKY
Sbjct: 61 GPSYAKKVALWLARLLGAGGTVSVIYIFGNNAVDENGAKIPDEFDNDPILVQQLRRTYKY 120
Query: 394 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 573
FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE
Sbjct: 121 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 180
Query: 574 TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLN 753
TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLN
Sbjct: 181 TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLN 240
Query: 754 RDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
RDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL
Sbjct: 241 RDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 300
Query: 934 EHYALEEDPLEAFKXXXXXXXXXXXXXPAELS 1029
EHYALEEDPLEAFK AELS
Sbjct: 301 EHYALEEDPLEAFKQRQSRLEQEEQQRLAELS 332
>ref|NP_001179369.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 [Bos taurus].
Length = 260
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
>ref|XP_002685616.1| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1-like [Bos taurus].
Length = 260
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
>ref|NP_001180010.2| CTD small phosphatase-like protein [Bos taurus].
Length = 276
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQIIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 258 E--GLSQEDDVYSML 270
>ref|XP_002696988.1| PREDICTED: small CTD phosphatase 3-like [Bos taurus].
Length = 276
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQIIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 258 E--GLSQEDDVYSML 270
>ref|NP_001178334.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A)
small phosphatase like 2 [Bos taurus].
Length = 466
Score = 75.5 bits (184), Expect = 7e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|XP_002691164.1| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase like 2 [Bos taurus].
Length = 466
Score = 75.5 bits (184), Expect = 7e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|NP_001039400.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 [Bos taurus].
Length = 271
Score = 74.3 bits (181), Expect = 2e-13
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Frame = +1
Query: 436 CLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF---------------KKRPGI 570
CLLP+ E Q +V++L L+H + F KRP +
Sbjct: 89 CLLPEVTEED--QGRICVVIDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVLKRPYV 146
Query: 571 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 750
+ +++ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L
Sbjct: 147 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 206
Query: 751 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 930
RD + +++D ++ P N V ++ W + D LL+L + L+G EDV T
Sbjct: 207 GRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTS 264
Query: 931 L 933
L
Sbjct: 265 L 265
>ref|NP_001039491.1| CTD nuclear envelope phosphatase 1 [Bos taurus].
Length = 244
Score = 62.8 bits (151), Expect = 5e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 556 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 732
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 733 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 912
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 913 EDVRTVL 933
DVR+VL
Sbjct: 228 ADVRSVL 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,402,675
Number of extensions: 998070
Number of successful extensions: 5026
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4992
Number of HSP's successfully gapped: 9
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533672.2| PREDICTED: similar to translocase of inner mito... 571 e-163
Alignment gi|XP_851188.1| PREDICTED: similar to CTD (carboxy-terminal dom... 80 3e-15
Alignment gi|XP_544655.1| PREDICTED: similar to Y47D9A.2a isoform 1 [Cani... 75 8e-14
Alignment gi|XP_860720.1| PREDICTED: similar to Y47D9A.2a isoform 6 [Cani... 75 8e-14
Alignment gi|XP_860654.1| PREDICTED: similar to Y47D9A.2a isoform 4 [Cani... 75 8e-14
Alignment gi|XP_850070.1| PREDICTED: similar to Y47D9A.2a isoform 2 [Cani... 75 8e-14
Alignment gi|XP_538256.2| PREDICTED: similar to Carboxy-terminal domain R... 74 2e-13
Alignment gi|XP_851254.1| PREDICTED: similar to CTD small phosphatase-lik... 69 6e-12
Alignment gi|XP_863251.1| PREDICTED: similar to CTD (carboxy-terminal dom... 66 6e-11
Alignment gi|XP_860128.1| PREDICTED: similar to Carboxy-terminal domain R... 65 1e-10
>ref|XP_533672.2| PREDICTED: similar to translocase of inner mitochondrial membrane 50
homolog [Canis familiaris].
Length = 356
Score = 571 bits (1471), Expect = e-163
Identities = 287/333 (86%), Positives = 293/333 (87%), Gaps = 1/333 (0%)
Frame = +1
Query: 34 MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQ-RSS 210
MAASA L LRLRS L +GARGLCARLAT PPR PDQ EIGSR+GTK Q QGPQQQ R +
Sbjct: 1 MAASAALALRLRSELRRGARGLCARLATPPPRTPDQATEIGSRSGTKAQAQGPQQQQRGT 60
Query: 211 EGPSYAKKVXXXXXXXXXXXXTVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYK 390
EGPSYAKKV TVS+VYIFGNNSVDE GAKIPDEFDNDPILVQQLRRTYK
Sbjct: 61 EGPSYAKKVALWLAGLLGAGGTVSVVYIFGNNSVDETGAKIPDEFDNDPILVQQLRRTYK 120
Query: 391 YFKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGI 570
YFKDYRQMIIEPTSPCLLPDPL+EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGI
Sbjct: 121 YFKDYRQMIIEPTSPCLLPDPLKEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGI 180
Query: 571 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 750
ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL
Sbjct: 181 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 240
Query: 751 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 930
NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALN VEDVRTV
Sbjct: 241 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNRVEDVRTV 300
Query: 931 LEHYALEEDPLEAFKXXXXXXXXXXXXXPAELS 1029
LEHYALE+DPLEAFK AELS
Sbjct: 301 LEHYALEDDPLEAFKQRQSRLEQEEQQRLAELS 333
>ref|XP_851188.1| PREDICTED: similar to CTD (carboxy-terminal domain, RNA polymerase
II, polypeptide A) small phosphatase 1 isoform 1 isoform
1 [Canis familiaris].
Length = 261
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 107 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 158
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 159 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 218
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 219 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>ref|XP_544655.1| PREDICTED: similar to Y47D9A.2a isoform 1 [Canis familiaris].
Length = 466
Score = 75.5 bits (184), Expect = 8e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|XP_860720.1| PREDICTED: similar to Y47D9A.2a isoform 6 [Canis familiaris].
Length = 394
Score = 75.5 bits (184), Expect = 8e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 214 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 273
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 274 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 333
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 334 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 378
>ref|XP_860654.1| PREDICTED: similar to Y47D9A.2a isoform 4 [Canis familiaris].
Length = 466
Score = 75.5 bits (184), Expect = 8e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|XP_850070.1| PREDICTED: similar to Y47D9A.2a isoform 2 [Canis familiaris].
Length = 466
Score = 75.5 bits (184), Expect = 8e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|XP_538256.2| PREDICTED: similar to Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 2 (Small CTD phosphatase
2) (SCP2) (Nuclear LIM interactor-interacting factor 2)
(NLI-interacting factor 2) (Protein OS-4) isoform 1
[Canis familiaris].
Length = 271
Score = 74.3 bits (181), Expect = 2e-13
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Frame = +1
Query: 436 CLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFK---------------KRPGI 570
CLLP+ E Q +V++L L+H + F KRP +
Sbjct: 89 CLLPEVTEED--QGRICVVIDLDETLVHSSFKPINNADFVVPVEIEGTTHQVYVLKRPYV 146
Query: 571 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 750
+ +++ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L
Sbjct: 147 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 206
Query: 751 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 930
RD + +++D ++ P N V ++ W + D LL+L + L+G EDV T
Sbjct: 207 GRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTS 264
Query: 931 L 933
L
Sbjct: 265 L 265
>ref|XP_851254.1| PREDICTED: similar to CTD small phosphatase-like protein
(CTDSP-like) (Small C-terminal domain phosphatase 3)
(Small CTD phosphatase 3) (SCP3) (Nuclear LIM
interactor-interacting factor 1) (NLI-interacting factor
1) (NIF-like protein) (RBSP3) (YA22 protein) (... [Canis
familiaris].
Length = 347
Score = 69.3 bits (168), Expect = 6e-12
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 132 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 189
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSE-------------------TGMTAFPL 651
KRP ++ Q++ L+E V+FT+ + A P+
Sbjct: 190 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKWRCPPLSAAPAWLSCVSSQYADPV 249
Query: 652 IDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVAL 831
D +D G RLFR++ + G++VKD+S L R+ ++V++VD ++ P N V +
Sbjct: 250 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 309
Query: 832 RPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
+ W + D LLDL F + L+ +DV ++L
Sbjct: 310 QSWFDDMTDTELLDLIPFFE--GLSREDDVYSML 341
>ref|XP_863251.1| PREDICTED: similar to CTD (carboxy-terminal domain, RNA polymerase
II, polypeptide A) small phosphatase 1 isoform 2 isoform
2 [Canis familiaris].
Length = 296
Score = 65.9 bits (159), Expect = 6e-11
Identities = 39/124 (31%), Positives = 66/124 (53%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 820 GVAL 831
V L
Sbjct: 218 AVRL 221
>ref|XP_860128.1| PREDICTED: similar to Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 2 (Small CTD phosphatase
2) (SCP2) (Nuclear LIM interactor-interacting factor 2)
(NLI-interacting factor 2) (Protein OS-4) isoform 2
[Canis familiaris].
Length = 119
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/115 (33%), Positives = 61/115 (53%)
Frame = +1
Query: 589 LAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPAR 768
+ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L RD +
Sbjct: 1 MGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRK 60
Query: 769 VVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
+++D ++ P N V ++ W + D LL+L + L+G EDV T L
Sbjct: 61 TLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTSL 113
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,037,479
Number of extensions: 1031979
Number of successful extensions: 5052
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5018
Number of HSP's successfully gapped: 14
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079892.1| mitochondrial import inner membrane translocase... 552 e-157
Alignment gi|NP_598471.3| CTD small phosphatase-like protein [Mus musculu... 80 3e-15
Alignment gi|NP_694728.1| carboxy-terminal domain RNA polymerase II polyp... 80 3e-15
Alignment gi|NP_997615.1| CTD small phosphatase-like protein 2 [Mus muscu... 75 6e-14
Alignment gi|NP_001106941.1| carboxy-terminal domain RNA polymerase II po... 74 2e-13
Alignment gi|NP_666124.1| carboxy-terminal domain RNA polymerase II polyp... 65 7e-11
Alignment gi|NP_080293.1| CTD nuclear envelope phosphatase 1 [Mus musculu... 63 4e-10
>ref|NP_079892.1| mitochondrial import inner membrane translocase subunit TIM50
precursor [Mus musculus].
Length = 353
Score = 552 bits (1422), Expect = e-157
Identities = 277/332 (83%), Positives = 285/332 (85%)
Frame = +1
Query: 34 MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQRSSE 213
MAASA LF RLRSGL GARGLC RLA PPR P+Q EI +R G+K Q GPQ Q SE
Sbjct: 1 MAASAALFSRLRSGLRVGARGLCTRLAPPPPRTPEQVTEIANRGGSKAQ--GPQHQPGSE 58
Query: 214 GPSYAKKVXXXXXXXXXXXXTVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYKY 393
GPSYAKK+ TVSIVYIFGNN VDENG KIPDEFD+DPILVQQLRRTYKY
Sbjct: 59 GPSYAKKIALWIAGLLGAGGTVSIVYIFGNNPVDENGTKIPDEFDSDPILVQQLRRTYKY 118
Query: 394 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 573
FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE
Sbjct: 119 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 178
Query: 574 TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLN 753
TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYM+GHHVKDISCLN
Sbjct: 179 TLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMEGHHVKDISCLN 238
Query: 754 RDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
RDPARVVVVDCKKEAFRLQP+NGVALRPWDGNSDDRVLLDLSAFLKTIALN VEDVRTVL
Sbjct: 239 RDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDRVLLDLSAFLKTIALNQVEDVRTVL 298
Query: 934 EHYALEEDPLEAFKXXXXXXXXXXXXXPAELS 1029
EHYALE+DPLEAFK AELS
Sbjct: 299 EHYALEDDPLEAFKQRQSRLEQEEQQRLAELS 330
>ref|NP_598471.3| CTD small phosphatase-like protein [Mus musculus].
Length = 276
Score = 80.1 bits (196), Expect = 3e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQVIPVPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 258 E--GLSREDDVYSML 270
>ref|NP_694728.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 [Mus musculus].
Length = 261
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 107 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 158
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 159 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 218
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 219 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>ref|NP_997615.1| CTD small phosphatase-like protein 2 [Mus musculus].
Length = 465
Score = 75.5 bits (184), Expect = 6e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 285 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 344
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 345 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 404
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 405 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 449
>ref|NP_001106941.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 isoform a [Mus musculus].
Length = 270
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Frame = +1
Query: 436 CLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF---------------KKRPGI 570
CLLP+ + Q +V++L L+H + F KRP +
Sbjct: 88 CLLPEVTEQD--QGRICVVIDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVLKRPYV 145
Query: 571 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 750
+ +++ L+E V+FT+ A P+ D +D G RLFR+A + G +VKD+S L
Sbjct: 146 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRL 205
Query: 751 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 930
RD + V++D ++ P N V ++ W + D LL+L + L+G +DV T
Sbjct: 206 GRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFE--ELSGTDDVYTS 263
Query: 931 L 933
L
Sbjct: 264 L 264
>ref|NP_666124.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 isoform b [Mus musculus].
Length = 119
Score = 65.5 bits (158), Expect = 7e-11
Identities = 39/115 (33%), Positives = 61/115 (53%)
Frame = +1
Query: 589 LAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPAR 768
+ L+E V+FT+ A P+ D +D G RLFR+A + G +VKD+S L RD +
Sbjct: 1 MGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRDLRK 60
Query: 769 VVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V++D ++ P N V ++ W + D LL+L + L+G +DV T L
Sbjct: 61 TVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFE--ELSGTDDVYTSL 113
>ref|NP_080293.1| CTD nuclear envelope phosphatase 1 [Mus musculus].
Length = 244
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 556 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 732
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 733 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 912
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 913 EDVRTVL 933
DVR+VL
Sbjct: 228 ADVRSVL 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,327,606
Number of extensions: 836610
Number of successful extensions: 3709
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3695
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355956.1| PREDICTED: LOW QUALITY PROTEIN: mitochondria... 595 e-170
Alignment gi|XP_003358412.1| PREDICTED: CTD small phosphatase-like protei... 80 2e-15
Alignment gi|XP_003358411.1| PREDICTED: CTD small phosphatase-like protei... 80 2e-15
Alignment gi|XP_003132160.2| PREDICTED: CTD small phosphatase-like protei... 79 5e-15
Alignment gi|XP_003361933.1| PREDICTED: carboxy-terminal domain RNA polym... 65 8e-11
Alignment gi|XP_003358300.1| PREDICTED: CTD nuclear envelope phosphatase ... 63 3e-10
Alignment gi|XP_003131985.2| PREDICTED: CTD nuclear envelope phosphatase ... 63 3e-10
>ref|XP_003355956.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial import inner membrane
translocase subunit TIM50-like [Sus scrofa].
Length = 382
Score = 595 bits (1534), Expect = e-170
Identities = 306/359 (85%), Positives = 306/359 (85%), Gaps = 27/359 (7%)
Frame = +1
Query: 34 MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQRSSE 213
MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQRSSE
Sbjct: 1 MAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQVQGPQQQRSSE 60
Query: 214 GPSYAKKVXXXXXXXXXXXXTVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYKY 393
GPSYAKKV TVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYKY
Sbjct: 61 GPSYAKKVALWLAGLLGAGGTVSIVYIFGNNSVDENGAKIPDEFDNDPILVQQLRRTYKY 120
Query: 394 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 573
FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE
Sbjct: 121 FKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIE 180
Query: 574 TLFQQLAPLYEIVIFTSETGM---------------------------TAFPLIDSVDPH 672
TLFQQLAPLYEIVIFTSETGM TAFPLIDSVDPH
Sbjct: 181 TLFQQLAPLYEIVIFTSETGMVRRRAAEGGSMWRAASLTALPVPSHPQTAFPLIDSVDPH 240
Query: 673 GFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNS 852
GFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNS
Sbjct: 241 GFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNS 300
Query: 853 DDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEEDPLEAFKXXXXXXXXXXXXXPAELS 1029
DDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEEDPLEAFK AELS
Sbjct: 301 DDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEEDPLEAFKQRQSRLEQEEQQRLAELS 359
>ref|XP_003358412.1| PREDICTED: CTD small phosphatase-like protein-like [Sus scrofa].
Length = 256
Score = 79.7 bits (195), Expect = 2e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 60 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 117
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 118 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 177
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 178 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 237
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 238 E--GLSQEDDVYSML 250
>ref|XP_003358411.1| PREDICTED: CTD small phosphatase-like protein-like [Sus scrofa].
Length = 276
Score = 79.7 bits (195), Expect = 2e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 258 E--GLSQEDDVYSML 270
>ref|XP_003132160.2| PREDICTED: CTD small phosphatase-like protein-like [Sus scrofa].
Length = 265
Score = 78.6 bits (192), Expect = 5e-15
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 32/212 (15%)
Frame = +1
Query: 394 FKDYRQMIIEPTSPCLLPDPLRE---------PYYQPPYTL--------VLELTGVLLHP 522
F+DY +SP +LP + E Y P T+ V++L L+H
Sbjct: 50 FRDYNVEAPPGSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
Query: 523 EWSLATGWRF---------------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 657
+ + F KRP ++ Q++ L+E V+FT+ A P+ D
Sbjct: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
Query: 658 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 837
+D G RLFR++ + G++VKD+S L R+ ++V++VD ++ P N V ++
Sbjct: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
Query: 838 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
W + D LLDL F + L+ +DV ++L
Sbjct: 230 WFDDMTDTELLDLIPFFE--GLSQEDDVYSML 259
>ref|XP_003361933.1| PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A
small phosphatase 2-like [Sus scrofa].
Length = 119
Score = 64.7 bits (156), Expect = 8e-11
Identities = 38/115 (33%), Positives = 61/115 (53%)
Frame = +1
Query: 589 LAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPAR 768
+ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L RD +
Sbjct: 1 MGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRK 60
Query: 769 VVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
+++D ++ P N V ++ W + D LL+L + L+G EDV T L
Sbjct: 61 TLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTSL 113
>ref|XP_003358300.1| PREDICTED: CTD nuclear envelope phosphatase 1-like [Sus scrofa].
Length = 255
Score = 62.8 bits (151), Expect = 3e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 556 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 732
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 121 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 180
Query: 733 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 912
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 181 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 238
Query: 913 EDVRTVL 933
DVR+VL
Sbjct: 239 ADVRSVL 245
>ref|XP_003131985.2| PREDICTED: CTD nuclear envelope phosphatase 1-like [Sus scrofa].
Length = 244
Score = 62.8 bits (151), Expect = 3e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 556 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 732
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 733 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 912
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 913 EDVRTVL 933
DVR+VL
Sbjct: 228 ADVRSVL 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,507,709
Number of extensions: 643877
Number of successful extensions: 3366
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3352
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001563.1| mitochondrial import inner membrane transloc... 585 e-167
Alignment gi|NP_005799.2| CTD small phosphatase-like protein isoform 2 [H... 82 8e-16
Alignment gi|NP_001193807.1| carboxy-terminal domain RNA polymerase II po... 80 3e-15
Alignment gi|NP_872580.1| carboxy-terminal domain RNA polymerase II polyp... 80 3e-15
Alignment gi|NP_067021.1| carboxy-terminal domain RNA polymerase II polyp... 80 3e-15
Alignment gi|NP_001008393.1| CTD small phosphatase-like protein isoform 1... 80 4e-15
Alignment gi|NP_057480.2| CTD small phosphatase-like protein 2 [Homo sapi... 75 8e-14
Alignment gi|NP_005721.3| carboxy-terminal domain RNA polymerase II polyp... 74 2e-13
Alignment gi|NP_001193808.1| carboxy-terminal domain RNA polymerase II po... 70 4e-12
Alignment gi|NP_001137247.1| CTD nuclear envelope phosphatase 1 [Homo sap... 63 5e-10
>ref|NP_001001563.1| mitochondrial import inner membrane translocase subunit TIM50 [Homo
sapiens].
Length = 456
Score = 585 bits (1509), Expect = e-167
Identities = 294/343 (85%), Positives = 300/343 (87%)
Frame = +1
Query: 1 RVGGASWRQRKMAASAGLFLRLRSGLLQGARGLCARLATAPPRAPDQTAEIGSRAGTKVQ 180
RVGGA+WRQRKMAASA +F RLRSGL G+RGLC RLAT P RAPDQ AEIGSR TK Q
Sbjct: 93 RVGGAAWRQRKMAASAAVFSRLRSGLRLGSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQ 152
Query: 181 VQGPQQQRSSEGPSYAKKVXXXXXXXXXXXXTVSIVYIFGNNSVDENGAKIPDEFDNDPI 360
GPQQQ SEGPSYAKKV TVS+VYIFGNN VDENGAKIPDEFDNDPI
Sbjct: 153 --GPQQQPGSEGPSYAKKVALWLAGLLGAGGTVSVVYIFGNNPVDENGAKIPDEFDNDPI 210
Query: 361 LVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLAT 540
LVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPL+EPYYQPPYTLVLELTGVLLHPEWSLAT
Sbjct: 211 LVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLAT 270
Query: 541 GWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD 720
GWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD
Sbjct: 271 GWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD 330
Query: 721 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA 900
GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA
Sbjct: 331 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA 390
Query: 901 LNGVEDVRTVLEHYALEEDPLEAFKXXXXXXXXXXXXXPAELS 1029
LNGVEDVRTVLEHYALE+DPL AFK AELS
Sbjct: 391 LNGVEDVRTVLEHYALEDDPLAAFKQRQSRLEQEEQQRLAELS 433
>ref|NP_005799.2| CTD small phosphatase-like protein isoform 2 [Homo sapiens].
Length = 265
Score = 82.0 bits (201), Expect = 8e-16
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Frame = +1
Query: 394 FKDYRQMIIEPTSPCLLPDPLRE---------PYYQPPYTL--------VLELTGVLLHP 522
F+DY P+SP +LP + E Y P T+ V++L L+H
Sbjct: 50 FRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
Query: 523 EWSLATGWRF---------------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 657
+ + F KRP ++ Q++ L+E V+FT+ A P+ D
Sbjct: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
Query: 658 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 837
+D G RLFR++ + G++VKD+S L R+ ++V++VD ++ P N V ++
Sbjct: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
Query: 838 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
W + D LLDL F + L+ +DV ++L
Sbjct: 230 WFDDMTDTELLDLIPFFE--GLSREDDVYSML 259
>ref|NP_001193807.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 isoform 3 [Homo sapiens].
Length = 260
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
>ref|NP_872580.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 isoform 2 [Homo sapiens].
Length = 260
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
>ref|NP_067021.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 isoform 1 [Homo sapiens].
Length = 261
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/158 (32%), Positives = 83/158 (52%)
Frame = +1
Query: 460 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 639
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 107 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 158
Query: 640 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 819
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 159 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 218
Query: 820 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V + W N D L DL F + L+ V+DV +VL
Sbjct: 219 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>ref|NP_001008393.1| CTD small phosphatase-like protein isoform 1 [Homo sapiens].
Length = 276
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 400 DYRQMIIEPTSPC--LLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 552
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 553 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 708
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 709 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 888
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 889 KTIALNGVEDVRTVL 933
+ L+ +DV ++L
Sbjct: 258 E--GLSREDDVYSML 270
>ref|NP_057480.2| CTD small phosphatase-like protein 2 [Homo sapiens].
Length = 466
Score = 75.5 bits (184), Expect = 8e-14
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Frame = +1
Query: 475 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 609
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 610 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 786
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 787 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVR 924
+AF Q NG+ + W + +D LL L FL K + LN EDVR
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVR 450
>ref|NP_005721.3| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 [Homo sapiens].
Length = 271
Score = 74.3 bits (181), Expect = 2e-13
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Frame = +1
Query: 436 CLLPDPLREPYYQPPYTLVLELTGVLLHPEWSLATGWRF---------------KKRPGI 570
CLLP+ E Q +V++L L+H + F KRP +
Sbjct: 89 CLLPEVTEED--QGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYV 146
Query: 571 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 750
+ +++ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L
Sbjct: 147 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 206
Query: 751 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 930
RD + +++D ++ P N V ++ W + D LL+L + L+G EDV T
Sbjct: 207 GRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTS 264
Query: 931 L 933
L
Sbjct: 265 L 265
>ref|NP_001193808.1| carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 isoform 4 [Homo sapiens].
Length = 120
Score = 69.7 bits (169), Expect = 4e-12
Identities = 41/115 (35%), Positives = 63/115 (54%)
Frame = +1
Query: 589 LAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPAR 768
+ L+E V+FT+ A P+ D +D G RLFR++ + G++VKD+S L RD R
Sbjct: 1 MGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRR 60
Query: 769 VVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 933
V+++D ++ P N V + W N D L DL F + L+ V+DV +VL
Sbjct: 61 VLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 113
>ref|NP_001137247.1| CTD nuclear envelope phosphatase 1 [Homo sapiens].
Length = 244
Score = 62.8 bits (151), Expect = 5e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 556 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 732
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 733 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 912
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 913 EDVRTVL 933
DVR+VL
Sbjct: 228 ADVRSVL 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,210,387
Number of extensions: 1006261
Number of successful extensions: 4696
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4667
Number of HSP's successfully gapped: 11
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007667
(1041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 319 2e-84
>Sscrofa_Chr06
|| Length = 157765593
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 139 cagactgcagagatcgggagccgagcaggcactaaggtccaggtccaggggccacagcag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43831969 cagactgcagagatcgggagccgagcaggcactaaggtccaggtccaggggccacagcag 43831910
Query: 199 cagaggagctcggagggtcccagctatgccaaaaaagtcgcactctggcttgctgggctg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43831909 cagaggagctcggagggtcccagctatgccaaaaaagtcgcactctggcttgctgggctg 43831850
Query: 259 ctcggggctggtgggaccgtgagcatcgtctatatcttcgg 299
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43831849 ctcggggctggtgggaccgtgagcatcgtctatatcttcgg 43831809
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 734 aggacatttcatgtctgaatcgggacccagcccgggtggtagtcgtggactgcaagaaag 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43827672 aggacatttcatgtctgaatcgggacccagcccgggtggtagtcgtggactgcaagaaag 43827613
Query: 794 aagccttccgcctacagccctacaacggcgtcgccctgcggccctgggatggcaactccg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43827612 aagccttccgcctacagccctacaacggcgtcgccctgcggccctgggatggcaactccg 43827553
Query: 854 acgaccgagtcttattggacctgtctgccttcctcaaga 892
|||||||||||||||||||||||||||||||||||||||
Sbjct: 43827552 acgaccgagtcttattggacctgtctgccttcctcaaga 43827514
Score = 266 bits (134), Expect = 2e-68
Identities = 141/142 (99%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 1 cgagtgggcggggcctcgtggcgtcagcgcaagatggcggcctcggcgggg-ctgttctt 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 43832989 cgagtgggcggggcctcgtggcgtcagcgcaagatggcggcctcggcgggggctgttctt 43832930
Query: 60 gcggttgcggagcgggctcttgcaaggcgcgcgggggctgtgcgcgaggctcgcgacggc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43832929 gcggttgcggagcgggctcttgcaaggcgcgcgggggctgtgcgcgaggctcgcgacggc 43832870
Query: 120 gcctccccgggccccagaccag 141
||||||||||||||||||||||
Sbjct: 43832869 gcctccccgggccccagaccag 43832848
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 409 cagatgatcatcgagcccaccagcccctgccttctcccagaccccctgcgggagccatac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43829438 cagatgatcatcgagcccaccagcccctgccttctcccagaccccctgcgggagccatac 43829379
Query: 469 taccagccgccgtacacactggtcctggagctcacgggcgtcctcttgcaccctgagtgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43829378 taccagccgccgtacacactggtcctggagctcacgggcgtcctcttgcaccctgagtgg 43829319
Query: 529 tcg 531
|||
Sbjct: 43829318 tcg 43829316
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 531 gctggccactggctggaggtttaagaagcgtccaggcatcgagaccttatttcagcagct 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43828902 gctggccactggctggaggtttaagaagcgtccaggcatcgagaccttatttcagcagct 43828843
Query: 591 cgcccctttatacgaaatcgtcatctttacgtcggagactggcatg 636
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43828842 cgcccctttatacgaaatcgtcatctttacgtcggagactggcatg 43828797
Score = 206 bits (104), Expect = 2e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 893 ccattgctttgaacggtgtggaggatgtccgaaccgtgctggagcactacgccctggagg 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43826955 ccattgctttgaacggtgtggaggatgtccgaaccgtgctggagcactacgccctggagg 43826896
Query: 953 aggaccctctggaggccttcaaacagcggcagagccggctagagcagg 1000
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 43826895 aggaccctctggaggctttcaaacagcggcagagccggctagagcagg 43826848
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 636 gactgcgtttcccctcatcgacagcgtggacccccacggcttcatctcctaccgcctgtt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43828716 gactgcgtttcccctcatcgacagcgtggacccccacggcttcatctcctaccgcctgtt 43828657
Query: 696 ccgggatgccacgagatacatggatggacaccacgttaagg 736
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43828656 ccgggatgccacgagatacatggatggacaccacgttaagg 43828616
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 352 gatccaattctggtacagcagttgcgccggacatacaaatatttcaaggattacagacag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43829585 gatccaattctggtacagcagttgcgccggacatacaaatatttcaaggattacagacag 43829526
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 298 ggaaacaactctgtggatgaaaatggtgccaag 330
|||||||||||||||||||||||||||||||||
Sbjct: 43831296 ggaaacaactctgtggatgaaaatggtgccaag 43831264
Score = 60.0 bits (30), Expect = 3e-06
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 997 caggaggaacagcagcggccggctgagctctcc-agtctagcaagc 1041
||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 43825982 caggaggaacagcagcgcctggctgagctctccaagtctagcaagc 43825937
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,447,456
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 10
Length of query: 1041
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1020
Effective length of database: 2,808,413,156
Effective search space: 2864581419120
Effective search space used: 2864581419120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)