Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039930.1| WD repeat-containing protein 92 [Bos taurus]. 638 0.0
>ref|NP_001039930.1| WD repeat-containing protein 92 [Bos taurus].
Length = 357
Score = 638 bits (1646), Expect = 0.0
Identities = 308/330 (93%), Positives = 316/330 (95%)
Frame = +2
Query: 98 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 277
MSAFEKPQII+HIQKSL+YTVFDCKW+PCSAKFVTMGNFARGTGVIQLYEIQ GDLKLLR
Sbjct: 1 MSAFEKPQIISHIQKSLSYTVFDCKWMPCSAKFVTMGNFARGTGVIQLYEIQQGDLKLLR 60
Query: 278 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDXX 457
EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAP++PVYSVK HKEIINTID
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPEVPVYSVKGHKEIINTIDGV 120
Query: 458 XXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 637
APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180
Query: 638 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 817
RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD
Sbjct: 181 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
Query: 818 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 997
MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE+FLTAGGAG LHLWKYEYPIQRSKKDS
Sbjct: 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREVFLTAGGAGSLHLWKYEYPIQRSKKDS 300
Query: 998 EGVKMGVAGSVSLLQNVTLSTQPISSWDWS 1087
EGV+MGVAGSVSLLQNVTLSTQP+SS DWS
Sbjct: 301 EGVEMGVAGSVSLLQNVTLSTQPVSSLDWS 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,498,080
Number of extensions: 1243562
Number of successful extensions: 4858
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4800
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538521.2| PREDICTED: similar to CG14353-PA [Canis familia... 644 0.0
>ref|XP_538521.2| PREDICTED: similar to CG14353-PA [Canis familiaris].
Length = 357
Score = 644 bits (1661), Expect = 0.0
Identities = 312/330 (94%), Positives = 315/330 (95%)
Frame = +2
Query: 98 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 277
MSAFEKPQIIAHIQK LNYTVFDCKWVPCSAKFVTMGNFARGTGV+QLYEIQHGDLKLLR
Sbjct: 1 MSAFEKPQIIAHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVVQLYEIQHGDLKLLR 60
Query: 278 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDXX 457
EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAP+IPVYSVK HKEIINTID
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPEIPVYSVKGHKEIINTIDGV 120
Query: 458 XXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 637
APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180
Query: 638 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 817
RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD
Sbjct: 181 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
Query: 818 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 997
MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG G LHLWKYEYPIQRSKKDS
Sbjct: 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGTGSLHLWKYEYPIQRSKKDS 300
Query: 998 EGVKMGVAGSVSLLQNVTLSTQPISSWDWS 1087
EGV+MGVAGSVSLLQNVTLSTQPISS DWS
Sbjct: 301 EGVEMGVAGSVSLLQNVTLSTQPISSLDWS 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,388,015
Number of extensions: 1285350
Number of successful extensions: 4254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4209
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849240.1| WD repeat-containing protein 92 [Mus musculus]. 618 e-177
>ref|NP_849240.1| WD repeat-containing protein 92 [Mus musculus].
Length = 357
Score = 618 bits (1593), Expect = e-177
Identities = 297/330 (90%), Positives = 307/330 (93%)
Frame = +2
Query: 98 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 277
MS FEKPQII HIQK LNYTVFD KWVPCSAKFVTMGNFARGTGVIQ+YEIQ GDLKLLR
Sbjct: 1 MSTFEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLR 60
Query: 278 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDXX 457
EIEKAKPIKCGTFGA SLQQR+LATGDF GNLHIWNLEAP++PVYSVK HKEIINTID
Sbjct: 61 EIEKAKPIKCGTFGAASLQQRFLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINTIDGV 120
Query: 458 XXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 637
APEIVTGSRDGTVKVWDPRQK+DPVANMEP QGENKRDCWTVAFGNAYNQEE
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKEDPVANMEPAQGENKRDCWTVAFGNAYNQEE 180
Query: 638 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 817
RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD
Sbjct: 181 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
Query: 818 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 997
MRTQHPTKGFASV+EKAHKSTVWQVRHLPQNRE+FLT GGAG LHLWKYEYP QRSKKDS
Sbjct: 241 MRTQHPTKGFASVTEKAHKSTVWQVRHLPQNREIFLTTGGAGSLHLWKYEYPTQRSKKDS 300
Query: 998 EGVKMGVAGSVSLLQNVTLSTQPISSWDWS 1087
EG++MGVAGSVSLLQNVT+STQPISS DWS
Sbjct: 301 EGLEMGVAGSVSLLQNVTVSTQPISSLDWS 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,860,133
Number of extensions: 1072952
Number of successful extensions: 3937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3881
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125123.1| PREDICTED: WD repeat-containing protein 92-l... 653 0.0
>ref|XP_003125123.1| PREDICTED: WD repeat-containing protein 92-like [Sus scrofa].
Length = 357
Score = 653 bits (1684), Expect = 0.0
Identities = 318/330 (96%), Positives = 319/330 (96%)
Frame = +2
Query: 98 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 277
MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR
Sbjct: 1 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 60
Query: 278 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDXX 457
EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTID
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDGV 120
Query: 458 XXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 637
APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180
Query: 638 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 817
RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD
Sbjct: 181 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
Query: 818 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 997
MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS
Sbjct: 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300
Query: 998 EGVKMGVAGSVSLLQNVTLSTQPISSWDWS 1087
EGV+MGVAGSVSLLQNVTLSTQPISS DWS
Sbjct: 301 EGVEMGVAGSVSLLQNVTLSTQPISSLDWS 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,632,300
Number of extensions: 799595
Number of successful extensions: 3085
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3051
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612467.1| WD repeat-containing protein 92 [Homo sapiens]. 640 0.0
Alignment gi|NP_863651.1| apoptotic protease-activating factor 1 isoform ... 49 8e-06
Alignment gi|NP_037361.1| apoptotic protease-activating factor 1 isoform ... 49 8e-06
>ref|NP_612467.1| WD repeat-containing protein 92 [Homo sapiens].
Length = 357
Score = 640 bits (1652), Expect = 0.0
Identities = 309/330 (93%), Positives = 314/330 (95%)
Frame = +2
Query: 98 MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 277
MSAFEKPQIIAHIQK NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR
Sbjct: 1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 60
Query: 278 EIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDXX 457
EIEKAKPIKCGTFGATSLQQRYLATGDF GNLHIWNLEAP++PVYSVK HKEIIN ID
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120
Query: 458 XXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 637
APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180
Query: 638 RVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 817
RVVCAGYDNGDIKLFDLRNM+LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD
Sbjct: 181 RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
Query: 818 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 997
MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS
Sbjct: 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300
Query: 998 EGVKMGVAGSVSLLQNVTLSTQPISSWDWS 1087
EG++MGVAGSVSLLQNVTLSTQPISS DWS
Sbjct: 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330
>ref|NP_863651.1| apoptotic protease-activating factor 1 isoform c [Homo sapiens].
Length = 1248
Score = 48.9 bits (115), Expect = 8e-06
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Frame = +2
Query: 233 IQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVY 412
+Q+++ + G+ KLL + C F S R++AT + IWN ++ V+
Sbjct: 639 LQVFKAETGE-KLLEIKAHEDEVLCCAF---STDDRFIATCSVDKKVKIWNSMTGEL-VH 693
Query: 413 SVKAHKEIINTIDXXXXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 592
+ H E +N A TGS D +K+WD QK
Sbjct: 694 TYDEHSEQVNCCHFTNSSHHLLLA----TGSSDCFLKLWDLNQK---------------- 733
Query: 593 DCWTVAFGNA-------YNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFD 751
+C FG+ ++ +++++ + +G +KL+D + + R N+K +LE
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 793
Query: 752 RKDISM----------NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 901
++D+ + + + + K +FD+ T G H ST+
Sbjct: 794 QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIH----TSGLLGEIHTGHHSTIQYCDFS 849
Query: 902 PQN 910
PQN
Sbjct: 850 PQN 852
>ref|NP_037361.1| apoptotic protease-activating factor 1 isoform a [Homo sapiens].
Length = 1237
Score = 48.9 bits (115), Expect = 8e-06
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Frame = +2
Query: 233 IQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVY 412
+Q+++ + G+ KLL + C F S R++AT + IWN ++ V+
Sbjct: 628 LQVFKAETGE-KLLEIKAHEDEVLCCAF---STDDRFIATCSVDKKVKIWNSMTGEL-VH 682
Query: 413 SVKAHKEIINTIDXXXXXXXXXXAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 592
+ H E +N A TGS D +K+WD QK
Sbjct: 683 TYDEHSEQVNCCHFTNSSHHLLLA----TGSSDCFLKLWDLNQK---------------- 722
Query: 593 DCWTVAFGNA-------YNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFD 751
+C FG+ ++ +++++ + +G +KL+D + + R N+K +LE
Sbjct: 723 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 782
Query: 752 RKDISM----------NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 901
++D+ + + + + K +FD+ T G H ST+
Sbjct: 783 QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIH----TSGLLGEIHTGHHSTIQYCDFS 838
Query: 902 PQN 910
PQN
Sbjct: 839 PQN 841
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,605,060
Number of extensions: 1259812
Number of successful extensions: 4204
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007669
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 555 e-155
>Sscrofa_Chr03
|| Length = 144787322
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Plus
Query: 1 ctgttcttaacgtttggtttccggtttccaggttagcgttttgtcatggtttgttggggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77617115 ctgttcttaacgtttggtttccggtttccaggttagcgttttgtcatggtttgttggggg 77617174
Query: 61 tgtgcctgtggcctaggcggaatccaacaggtggaccatgtcggcctttgagaagcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77617175 tgtgcctgtggcctaggcggaatccaacaggtggaccatgtcggcctttgagaagcctca 77617234
Query: 121 gatcatcgcccatatacagaagagcctcaactacacggtattcgactgtaagtgggtgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77617235 gatcatcgcccatatacagaagagcctcaactacacggtattcgactgtaagtgggtgcc 77617294
Query: 181 ctgcagcgccaagtttgtgaccatgggcaacttcgcgcggggcaccggcgtcattcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77617295 ctgcagcgccaagtttgtgaccatgggcaacttcgcgcggggcaccggcgtcattcagct 77617354
Query: 241 gtacgagatccagcacggggacctaaagctgcttcgggag 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 77617355 gtacgagatccagcacggggacctaaagctgcttcgggag 77617394
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 730 ggtatgtagcttggagtttgacagaaaagacataagtatgaataaattagtagctacatc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77635640 ggtatgtagcttggagtttgacagaaaagacataagtatgaataaattagtagctacatc 77635699
Query: 790 tctggaaggaaagtttcatgtttttgacatgagaacacagcatccaaccaaaggttttgc 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77635700 tctggaaggaaagtttcatgtttttgacatgagaacacagcatccaaccaaaggttttgc 77635759
Query: 850 ttccgtttcagaaaagg 866
|||||||||||||||||
Sbjct: 77635760 ttccgtttcagaaaagg 77635776
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 381 ggaacttggaagctccagatatcccagtatattctgtaaaggctcataaggaaattataa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77628022 ggaacttggaagctccagatatcccagtatattctgtaaaggctcataaggaaattataa 77628081
Query: 441 ataccatagatggtgtcggtggactaggcatcggggaaggggcacctgaaattgtcactg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77628082 ataccatagatggtgtcggtggactaggcatcggggaaggggcacctgaaattgtcactg 77628141
Query: 501 gcagccgagatgg 513
|||||||||||||
Sbjct: 77628142 gcagccgagatgg 77628154
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 614 ggcaatgcatataatcaagaggaacgtgtcgtttgtgctggttatgacaacggagatatc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77633977 ggcaatgcatataatcaagaggaacgtgtcgtttgtgctggttatgacaacggagatatc 77634036
Query: 674 aaactatttgatctcagaaatatgtcattacggtgggagacaaatataaaaaacggggta 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77634037 aaactatttgatctcagaaatatgtcattacggtgggagacaaatataaaaaacggggta 77634096
Score = 234 bits (118), Expect = 8e-59
Identities = 124/126 (98%)
Strand = Plus / Plus
Query: 964 cgaatacccaattcagcggtccaagaaagattccgagggtgtaaagatgggagtcgcggg 1023
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 77639765 cgaatacccaattcagcggtccaagaaagattccgagggtgtagagatgggagtcgcggg 77639824
Query: 1024 ttcggtcagcctcctgcagaatgtcacgttgtctacccagcccatttccagttgggactg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 77639825 ttcggtcagcctcctgcagaatgtcacgttgtctacccagcccatttccagtttggactg 77639884
Query: 1084 gagtcc 1089
||||||
Sbjct: 77639885 gagtcc 77639890
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 279 agattgaaaaggccaaacccattaaatgtggaacatttggtgcaacatctttacagcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77625135 agattgaaaaggccaaacccattaaatgtggaacatttggtgcaacatctttacagcaga 77625194
Query: 339 gatatttagctactggggattttgctggaaaccttcatatatgg 382
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77625195 gatatttagctactggggattttgctggaaaccttcatatatgg 77625238
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 512 ggaactgtgaaggtgtgggacccaaggcagaaagatgaccccgttgctaatatggaacct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77630319 ggaactgtgaaggtgtgggacccaaggcagaaagatgaccccgttgctaatatggaacct 77630378
Query: 572 gtacaaggagaaaacaagagagactgctggaccgtggcatttgg 615
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77630379 gtacaaggagaaaacaagagagactgctggaccgtggcatttgg 77630422
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 864 aggctcataaatctactgtgtggcaggtccggcacctgccgcaaaacagagagctcttcc 923
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 77638485 aggctcataaatctactgtgtggcaggtccggcacctgccgcagaacagagagctcttcc 77638544
Query: 924 tgacagctggaggcgctggcggcctgcacctctggaagta 963
||||||||||||||||||||||||||||||||||||||||
Sbjct: 77638545 tgacagctggaggcgctggcggcctgcacctctggaagta 77638584
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,054,137
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 8
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)