Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029715.1| protein YIPF5 [Bos taurus]. 483 e-136
Alignment gi|NP_001096728.1| protein YIPF7 [Bos taurus]. 314 9e-86
Alignment gi|XP_002691265.1| PREDICTED: Yip1 domain family, member 4-like... 65 1e-10
Alignment gi|XP_872146.3| PREDICTED: Yip1 domain family, member 4-like [B... 65 1e-10
>ref|NP_001029715.1| protein YIPF5 [Bos taurus].
Length = 257
Score = 483 bits (1243), Expect = e-136
Identities = 236/254 (92%), Positives = 240/254 (94%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
F+NLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYSHQGRFVP DMMQPQQPYT
Sbjct: 4 FDNLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSHQGRFVPADMMQPQQPYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN
Sbjct: 64 GQIFQPTQTYTPTTPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|NP_001096728.1| protein YIPF7 [Bos taurus].
Length = 255
Score = 314 bits (804), Expect = 9e-86
Identities = 159/250 (63%), Positives = 189/250 (75%)
Frame = +3
Query: 141 NTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYTGQIF 320
++DFYQ++Y+ID+Q Q D G Y + Q FVP +M+ Y+GQ F
Sbjct: 8 DSDFYQSNYTIDNQEQTCNDSNACGNLYGSRKQQASEQPQPAFVPAEMLA-SSGYSGQFF 66
Query: 321 XXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDL 500
Y ++FE+EPPLLEELGINFDHIWQKTLTVL+P+K ADGSIMNETDL
Sbjct: 67 QPASNQDYYSPSS-YIDSFEEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDL 125
Query: 501 AGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYC 680
GP++FC+A GATLLLAGK+QFGYVYG+SAIGCLG+ LLNLMS +GVS+GCVASVLGYC
Sbjct: 126 TGPILFCMALGATLLLAGKVQFGYVYGMSAIGCLGIHALLNLMSSSGVSYGCVASVLGYC 185
Query: 681 LLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALL 860
LLPM++LSS A+ FSLQG G V IIGWCS SASKIF SALAMEGQQLL+AYPCALL
Sbjct: 186 LLPMVILSSCAIFFSLQGTFGTVSALVIIGWCSLSASKIFTSALAMEGQQLLIAYPCALL 245
Query: 861 YGVFALISVF 890
YG+FAL++VF
Sbjct: 246 YGLFALVTVF 255
>ref|XP_002691265.1| PREDICTED: Yip1 domain family, member 4-like [Bos taurus].
Length = 339
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 378 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 548
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 167 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 226
Query: 549 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 722
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 227 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 283
Query: 723 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 872
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 284 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 332
>ref|XP_872146.3| PREDICTED: Yip1 domain family, member 4-like [Bos taurus].
Length = 365
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 378 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 548
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 193 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 252
Query: 549 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 722
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 253 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 309
Query: 723 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 872
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 310 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,062,525
Number of extensions: 932047
Number of successful extensions: 3311
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3300
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535226.1| PREDICTED: similar to smooth muscle cell associ... 483 e-136
Alignment gi|XP_532367.1| PREDICTED: similar to Yip1 domain family, membe... 298 7e-81
Alignment gi|XP_858613.1| PREDICTED: similar to Yip1 domain family, membe... 129 6e-30
Alignment gi|XP_532925.1| PREDICTED: similar to Yip1 domain family, membe... 65 1e-10
>ref|XP_535226.1| PREDICTED: similar to smooth muscle cell associated protein 5
[Canis familiaris].
Length = 257
Score = 483 bits (1242), Expect = e-136
Identities = 236/254 (92%), Positives = 240/254 (94%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
FENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPP+MMQPQQPYT
Sbjct: 4 FENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPEMMQPQQPYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN
Sbjct: 64 GQIFQPTQAYTPTTPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|XP_532367.1| PREDICTED: similar to Yip1 domain family, member 7 isoform 1 [Canis
familiaris].
Length = 255
Score = 298 bits (762), Expect = 7e-81
Identities = 156/252 (61%), Positives = 188/252 (74%), Gaps = 2/252 (0%)
Frame = +3
Query: 141 NTDFYQTSYSIDDQSQQTYDYGGSGGPY--SKQYAGYDYSHQGRFVPPDMMQPQQPYTGQ 314
++DFYQ++Y+ID+Q + D G Y KQ AG Q F+PP+M+ P Q
Sbjct: 8 DSDFYQSNYTIDNQELSSEDSNAYGHLYVSGKQPAGDQ--RQPAFIPPEMLLPSGG-EAQ 64
Query: 315 IFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNET 494
+F Y ++FE+EPPLLEELGINF+HIWQKTLTVL+PLK ADGSIMNET
Sbjct: 65 LFQPASSPDYYSQSS-YVDSFEEEPPLLEELGINFNHIWQKTLTVLNPLKPADGSIMNET 123
Query: 495 DLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLG 674
DL GP++FC+ GATLLLAGK+QFGYVYG+SA+GCLG+ LL+LMS G+S GCVASVLG
Sbjct: 124 DLTGPILFCVTLGATLLLAGKVQFGYVYGLSAVGCLGIHTLLSLMSSPGLSCGCVASVLG 183
Query: 675 YCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCA 854
YCLLPM++LS +VFSLQG G VL IIGWCS SASKIFISAL M+GQQLLVAYPCA
Sbjct: 184 YCLLPMVILSGCGLVFSLQGTFGTVLALVIIGWCSLSASKIFISALDMKGQQLLVAYPCA 243
Query: 855 LLYGVFALISVF 890
L YG+FAL++VF
Sbjct: 244 LFYGLFALLTVF 255
>ref|XP_858613.1| PREDICTED: similar to Yip1 domain family, member 7 isoform 2 [Canis
familiaris].
Length = 147
Score = 129 bits (323), Expect = 6e-30
Identities = 72/138 (52%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 NTDFYQTSYSIDDQSQQTYDYGGSGGPY--SKQYAGYDYSHQGRFVPPDMMQPQQPYTGQ 314
++DFYQ++Y+ID+Q + D G Y KQ AG Q F+PP+M+ P Q
Sbjct: 8 DSDFYQSNYTIDNQELSSEDSNAYGHLYVSGKQPAGDQ--RQPAFIPPEMLLPSGG-EAQ 64
Query: 315 IFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNET 494
+F Y ++FE+EPPLLEELGINF+HIWQKTLTVL+PLK ADGSIMNET
Sbjct: 65 LFQPASSPDYYSQSS-YVDSFEEEPPLLEELGINFNHIWQKTLTVLNPLKPADGSIMNET 123
Query: 495 DLAGPMVFCLAFGATLLL 548
DL GP++FC+ GATLLL
Sbjct: 124 DLTGPILFCVTLGATLLL 141
>ref|XP_532925.1| PREDICTED: similar to Yip1 domain family, member 4 [Canis
familiaris].
Length = 244
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 378 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 548
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 549 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 722
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 132 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 188
Query: 723 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 872
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 189 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 237
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,568,239
Number of extensions: 955358
Number of successful extensions: 3492
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3477
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075800.1| protein YIPF5 [Mus musculus]. 455 e-128
Alignment gi|NP_076273.1| protein YIPF7 [Mus musculus]. 296 1e-80
Alignment gi|NP_080693.2| protein YIPF4 [Mus musculus]. 66 4e-11
>ref|NP_075800.1| protein YIPF5 [Mus musculus].
Length = 257
Score = 455 bits (1171), Expect = e-128
Identities = 223/254 (87%), Positives = 235/254 (92%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
F+NLN+ FYQTSYSID+QSQQ+YDYGGSGGPYSKQYAG DYS QGRFVPPDMMQPQQ YT
Sbjct: 4 FDNLNSGFYQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQTYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQI+ FYG++FE+EPPLLEELGINFDHIWQKTLTVLHPL+ ADGSIMN
Sbjct: 64 GQIYQPTQAYPPTTPQPFYGDSFEEEPPLLEELGINFDHIWQKTLTVLHPLRAADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGP+VFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPVVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAVVFSLQGMVGI+LTA IIGWCSFSASKIFISALAM+GQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|NP_076273.1| protein YIPF7 [Mus musculus].
Length = 254
Score = 296 bits (759), Expect = 1e-80
Identities = 158/254 (62%), Positives = 184/254 (72%), Gaps = 1/254 (0%)
Frame = +3
Query: 132 ENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRF-VPPDMMQPQQPYT 308
E + FYQ++Y ID+Q D G Y Y + Q PP+M P Y
Sbjct: 5 EQYDMGFYQSNYIIDNQEPSCNDSNAYGNVYG--YREPQATEQPSSPAPPEMFLPSD-YG 61
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQ+F + F++EPPLLEELGINFDHIWQKTLTVL+P+K ADGSIMN
Sbjct: 62 GQLFQPASNLDYYSQSPSV-DTFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMN 120
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDL GP++FC+A GATLL+AGK QFGYVYG+SAIGCLG+ LLNLMS +GVS+GCVASV
Sbjct: 121 ETDLTGPILFCVALGATLLMAGKAQFGYVYGMSAIGCLGIHALLNLMSNSGVSYGCVASV 180
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPM+LLSS AV FSLQG +G + II WCS SASKIFISALAMEGQQLLVAYP
Sbjct: 181 LGYCLLPMVLLSSCAVFFSLQGTIGTMSALLIITWCSLSASKIFISALAMEGQQLLVAYP 240
Query: 849 CALLYGVFALISVF 890
CALLYG+FAL++VF
Sbjct: 241 CALLYGLFALLTVF 254
>ref|NP_080693.2| protein YIPF4 [Mus musculus].
Length = 246
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 378 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 548
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 74 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 133
Query: 549 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 722
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 134 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 190
Query: 723 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 872
MV ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 191 GSFEMVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 239
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,596,221
Number of extensions: 820413
Number of successful extensions: 2773
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2765
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070693.1| protein YIPF5 [Sus scrofa]. 489 e-139
Alignment gi|XP_003128998.1| PREDICTED: protein YIPF7-like [Sus scrofa]. 298 2e-81
Alignment gi|XP_003135578.1| PREDICTED: protein YIPF6-like [Sus scrofa]. 48 7e-06
>ref|NP_001070693.1| protein YIPF5 [Sus scrofa].
Length = 257
Score = 489 bits (1260), Expect = e-139
Identities = 241/254 (94%), Positives = 241/254 (94%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT
Sbjct: 4 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN
Sbjct: 64 GQIFQPTQAYTPTAPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|XP_003128998.1| PREDICTED: protein YIPF7-like [Sus scrofa].
Length = 273
Score = 298 bits (764), Expect = 2e-81
Identities = 153/250 (61%), Positives = 186/250 (74%)
Frame = +3
Query: 141 NTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYTGQIF 320
++DFYQ++Y+I++Q Q + G Y + F+P +M P Y+GQ F
Sbjct: 26 DSDFYQSNYTIENQEQSGNEPHAYGNLYESRKQQASEQPPSAFIPSEMFIPSG-YSGQ-F 83
Query: 321 XXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDL 500
Y ++F++EPPLLEELGINFDHIWQKTLTVL+PLK ADGSIMNETDL
Sbjct: 84 LQPESNPDYYSQSSYIDSFDEEPPLLEELGINFDHIWQKTLTVLNPLKPADGSIMNETDL 143
Query: 501 AGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYC 680
GP++F +A G TLLLAGK+QFGYVYG+SAIGCLG+ LLNLMS +GVS+GCVASVLGYC
Sbjct: 144 TGPILFFVALGTTLLLAGKVQFGYVYGMSAIGCLGIHGLLNLMSSSGVSYGCVASVLGYC 203
Query: 681 LLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALL 860
LLPM++LSS A+ FSLQ G VL +IGWCS SASKIFISAL MEGQQLL+AYPCALL
Sbjct: 204 LLPMVILSSCAIFFSLQDTFGTVLALVVIGWCSLSASKIFISALDMEGQQLLIAYPCALL 263
Query: 861 YGVFALISVF 890
YG+FAL++VF
Sbjct: 264 YGLFALLTVF 273
>ref|XP_003135578.1| PREDICTED: protein YIPF6-like [Sus scrofa].
Length = 235
Score = 48.1 bits (113), Expect = 7e-06
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Frame = +3
Query: 426 IWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKI--------QFGYVYG 581
+ +K + VL+P K +++ + DL GP++ C+ A +L G + QF V+
Sbjct: 69 VGKKFMHVLYPRK--SNTLLRDWDLWGPLILCVTL-ALMLQRGSVDSEKDGGPQFAEVFV 125
Query: 582 ISAIGCLGMFCLLNLMSMTG-VSFGCVASVLGYCLLPM--ILLSSFAVVFSLQG----MV 740
I G + + LN + G +SF VLGYC+LP+ +L V+ + QG MV
Sbjct: 126 IVWFGAVTI--TLNSKLLGGNISFFQSLCVLGYCILPLTVAMLVCRLVLLAEQGPINFMV 183
Query: 741 GIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFA 875
+ + + W S AS F++ ++ L YP L Y V +
Sbjct: 184 RLFVVILMFAW-SIVASTAFLADSQPPNRKALAVYPVFLFYFVIS 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,825,178
Number of extensions: 595892
Number of successful extensions: 2003
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1996
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020118.1| protein YIPF5 [Homo sapiens]. 483 e-136
Alignment gi|NP_110426.4| protein YIPF5 [Homo sapiens]. 483 e-136
Alignment gi|NP_872398.2| protein YIPF7 [Homo sapiens]. 300 1e-81
Alignment gi|NP_115688.1| protein YIPF4 [Homo sapiens]. 64 2e-10
>ref|NP_001020118.1| protein YIPF5 [Homo sapiens].
Length = 257
Score = 483 bits (1243), Expect = e-136
Identities = 236/254 (92%), Positives = 240/254 (94%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
FENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPPDMMQPQQPYT
Sbjct: 4 FENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQI+ FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN
Sbjct: 64 GQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|NP_110426.4| protein YIPF5 [Homo sapiens].
Length = 257
Score = 483 bits (1243), Expect = e-136
Identities = 236/254 (92%), Positives = 240/254 (94%)
Frame = +3
Query: 129 FENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQPYT 308
FENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPPDMMQPQQPYT
Sbjct: 4 FENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYT 63
Query: 309 GQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 488
GQI+ FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN
Sbjct: 64 GQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMN 123
Query: 489 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 668
ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV
Sbjct: 124 ETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASV 183
Query: 669 LGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 848
LGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLVAYP
Sbjct: 184 LGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYP 243
Query: 849 CALLYGVFALISVF 890
CALLYGVFALISVF
Sbjct: 244 CALLYGVFALISVF 257
>ref|NP_872398.2| protein YIPF7 [Homo sapiens].
Length = 280
Score = 300 bits (769), Expect = 1e-81
Identities = 154/252 (61%), Positives = 191/252 (75%), Gaps = 2/252 (0%)
Frame = +3
Query: 141 NTDFYQTSYSIDDQSQQTYDYGGSGGPYS--KQYAGYDYSHQGRFVPPDMMQPQQPYTGQ 314
++DFYQ++++ID+Q Q D G Y KQ AG + FVP +M+ Y GQ
Sbjct: 32 DSDFYQSNFTIDNQEQSGNDSNAYGNLYGSRKQQAG-EQPQPASFVPSEMLM-SSGYAGQ 89
Query: 315 IFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNET 494
F Y ++F++EPPLLEELGI+FDHIWQKTLTVL+P+K DGSIMNET
Sbjct: 90 FFQPASNSDYYSQSP-YIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNET 148
Query: 495 DLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLG 674
DL GP++FC+A GATLLLAGK+QFGYVYG+SAIGCL + LLNLMS +GVS+GCVASVLG
Sbjct: 149 DLTGPILFCVALGATLLLAGKVQFGYVYGMSAIGCLVIHALLNLMSSSGVSYGCVASVLG 208
Query: 675 YCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCA 854
YCLLPM++LS A+ FSLQG+ GI+ + IIGWCS SASKIFI+AL MEGQQLLVAYPCA
Sbjct: 209 YCLLPMVILSGCAMFFSLQGIFGIMSSLVIIGWCSLSASKIFIAALHMEGQQLLVAYPCA 268
Query: 855 LLYGVFALISVF 890
+LYG+FAL+++F
Sbjct: 269 ILYGLFALLTIF 280
>ref|NP_115688.1| protein YIPF4 [Homo sapiens].
Length = 244
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 378 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 548
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 549 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 722
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 132 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLVV 188
Query: 723 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 872
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 189 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 237
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,094,356
Number of extensions: 953483
Number of successful extensions: 3252
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3231
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007674
(996 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895451.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 505 e-140
gb|GL896100.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 343 1e-91
Sscrofa_Chr08 66 4e-08
>gb|GL895451.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4014
Length = 12201
Score = 505 bits (255), Expect = e-140
Identities = 265/267 (99%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 731 aggaatggtaggaatcgttctcactgctggaatcattggatggtgtagtttttctgcttc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9507 aggaatggtaggaatcgttctcactgctggaatcattggatggtgtagtttttctgcttc 9448
Query: 791 caagatttttatctctgcattagccatggaaggccaacagcttctggtagcgtatccttg 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447 caagatttttatctctgcattagccatggaaggccaacagcttctggtagcgtatccttg 9388
Query: 851 tgctctgttatacggagtctttgccctcatttccgttttttgagccgagtttgtctggaa 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9387 tgctctgttatacggagtctttgccctcatttccgttttttgagccgagtttgtctggaa 9328
Query: 911 tgtggacatcattgggccatatatcaaaaaggacttggaactctttaatc-gaccagcaa 969
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 9327 tgtggacatcattgggccatatatcaaaaaggacttggaactcttaaatcggaccagcaa 9268
Query: 970 actgcaaactacagtgccactctcagc 996
|||||||||||||||||||||||||||
Sbjct: 9267 actgcaaactacagtgccactctcagc 9241
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 548 ggctggcaaaatccagtttggctatgtatatggcatcagcgcaattggatgcctgggaat 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10961 ggctggcaaaatccagtttggctatgtatatggcatcagcgcaattggatgcctgggaat 10902
Query: 608 gttttgtttattaaacttaatgagtatgactggtgtttcctttggttgtgtggcaagtgt 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10901 gttttgtttattaaacttaatgagtatgactggtgtttcctttggttgtgtggcaagtgt 10842
Query: 668 ccttggatattgtcttcttcccatgatcctactttccagctttgcagtggtattttcttt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10841 ccttggatattgtcttcttcccatgatcctactttccagctttgcagtggtattttcttt 10782
Query: 728 aca 730
|||
Sbjct: 10781 aca 10779
>gb|GL896100.1| Sus scrofa unplaced genomic scaffold chrU_scaffold474
Length = 11817
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 230 acagtatgctggctatgactattcgcatcaaggccgatttgtccctccagacatgatgca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2096 acagtatgctggctatgactattcgcatcaaggccgatttgtccctccagacatgatgca 2037
Query: 290 gccacaacagccttacacggggcagattttccagccaactcaggcgtatactccaactgc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2036 gccacaacagccttacacggggcagattttccagccaactcaggcgtatactccaactgc 1977
Query: 350 acctcagccgttctatggaaacaactttgaagatgagccacctttgttagaag 402
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 acctcagccgttctatggaaacaactttgaagatgagccacctttgttagaag 1924
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 401 agaattgggtatcaattttgaccacatctggcaaaaaacactgacagtgttacacccgtt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 agaattgggtatcaattttgaccacatctggcaaaaaacactgacagtgttacacccgtt 1041
Query: 461 gaaagtagcagatggcagtatcatgaatgagactgatttggcaggaccaatggttttttg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 gaaagtagcagatggcagtatcatgaatgagactgatttggcaggaccaatggttttttg 981
Query: 521 ccttgcctttggagccactttgttactgg 549
|||||||||||||||||||||||||||||
Sbjct: 980 ccttgcctttggagccactttgttactgg 952
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 116 tgccatgtcaggctttgaaaacctaaacacggatttctaccagacgagttacagcatcga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 tgccatgtcaggctttgaaaacctaaacacggatttctaccagacgagttacagcatcga 9007
Query: 176 tgaccagtcacagcaaacctatgactatggaggaagtggaggaccctatagcaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9006 tgaccagtcacagcaaacctatgactatggaggaagtggaggaccctatagcaa 8953
>Sscrofa_Chr08
|| Length = 148491826
Score = 65.9 bits (33), Expect = 4e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 414 aattttgaccacatctggcaaaaaacactgacagtgttacacccgttgaaagtagcagat 473
|||||||||||||| ||||||||||| |||| |||||| |||| ||||| |||||||
Sbjct: 36848370 aattttgaccacatatggcaaaaaaccttgacggtgttaaacccactgaaaccagcagat 36848311
Query: 474 ggcagtatcatgaatga 490
||||| || ||||||||
Sbjct: 36848310 ggcagcattatgaatga 36848294
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,422,194
Number of extensions: 413
Number of successful extensions: 413
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 6
Length of query: 996
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 975
Effective length of database: 2,808,413,156
Effective search space: 2738202827100
Effective search space used: 2738202827100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)